Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168446.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_658, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20421
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Found at i:1221 original size:26 final size:26
Alignment explanation
Indices: 1192--1244 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
1182 CCGGTGTGAT
*
1192 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCGTATG
* *
1218 CTTAGACTGAGAATGAACTCTGTATG
1 CTTACACTGAGAATGAACTCCGTATG
1244 C
1 C
1245 CTGAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCGTATG
Found at i:2648 original size:898 final size:898
Alignment explanation
Indices: 4--3757 Score: 4865
Period size: 895 Copynumber: 4.2 Consensus size: 898
1 AGG
* * * *
4 CACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGAGGGTGTGAGTTG
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * * * * *
69 TCGAGGTTGGATGAGGGATTGGGAGACAATATAAAGGCCAAGTACCAGCACTCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *** *
134 GGGCGC-ACACCCCCTCGCCCCCCCAATTACCGGAACACC-AATGCCATCGGTCAGGTTCTCCGA
131 GTGCGCAAC-CCCCCCCG-CCCCCCAATCGTCGGAAC-CCAAATGCCGTCGGTCAGGTTCTCCGA
* * * * *
197 CGATGCTCCGGCGATGGTGCCCCGGGCAAAAAAAAATACGGCACCAGTACATGCCTGAGCCCAGT
193 CGATGCTCCGGCGATGGTGCCCTGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * * *
262 ATGTGCACCCGTAACCGTCGGTCTGATCTGATCTTACACTGGGAATGAACTCCATACGCTTAGAC
258 ATGTGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGAC
* * * * *
327 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAGACGAGCGCGCCGGCGCTCAGCCGGCCAG
323 TGGGAATGAACTCTGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCACTCAACCGGCCAG
* * * * * * **
392 AGGGGCAAGATGCGCAAGCCGGGGATCAG-TCGGGTGCACCCCTGCATACTACCAATCCTACTA-
387 AGGGGCAGGATGCGCAAGCCGGGGATCGGCTCAGGT-CCCCCCTGCGTGCTACTGATCCTACTAC
* * * * * *
455 TCACAACCCTC-ATTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAGGCCAACCGA
451 TCGCAACCCTCGGTTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAA
* ** * * * *
519 TGAAACGAGCGGATGGGTGGGCACTAC-GCTGGCCAGAGAGGCGAGATGCACAAACCGTGAATCG
516 CGAAACGAGCGGGCGGGCGGGCACTACGGC-GGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCG
* * *
583 ATACGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGTCATTTTTATGGC
580 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
648 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
645 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * * *
713 CTATGTTTCACAATTTTT-AAACTTTTTACGGCTCTGGATTTTTTTAAAATTTTTTTAGAAGTAT
710 CTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAG
* * * *
777 TTTTGGCCCCAAACTTAGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCATC
775 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
*
842 TAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
840 AAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
**
901 CACTTTAATTACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
966 TC-ACGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
66 TCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * *
1030 TGTGCGCAAACCCGCCCCGGCCCCCCAATCGTCGGAACCTTAATACTGTCGGTCAGGTTCTCCGA
130 TGTGCGC-AACCC-CCCCCGCCCCCCAATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGA
* * * * * * * *
1095 CGATGCTCCGGCGATGGTGGCATAGGCAAAAAAAAATGTGACACCAGCACTTGCCTGAGCCCTGC
193 CGATGCTCCGGCGATGGTGCCCTGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * * * *
1160 ATGTGCACCCGTAACCCTTGGTCCGGTGTGATCTTACACTGGGAATGAACTCCGTATGCTTAGAC
258 ATGTGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGAC
* * * * * * *
1225 TGAGAATGAACTCTGTATGCCTGAGTCAACCC----ACCAGTGTGCAGGTACTCAACCGACCAGA
323 TGGGAATGAACTCTGTATGCCTAAGTCAACCCAGAAACGAGCGTGCGGGCACTCAACCGGCCAGA
* * * * * *
1286 GGGGCAGGATGCACAAGCTGGGGATC-GATCAGGTCCCCCCTGTGTGCTACTGATCTTACT-GTC
388 GGGGCAGGATGCGCAAGCCGGGGATCGGCTCAGGTCCCCCCTGCGTGCTACTGATCCTACTACTC
* * * *
1349 GCAACCCTCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTAACG
453 GCAACCCTCGGTTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACG
* * * *
1413 AAACGAGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGGCGAGATGCCCAAGCCGTGGATTGATA
518 AAACGAGCGGGCGGGCGGGCACTACGGCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATA
* *** *
1478 GGGTGGTAGGTGGGTTTAGGCATATCTTCAT-TTTCTGTTGTGCCAATGCCATTTTCATGGCTTG
583 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* * * * *
1542 TAAATTCATACAATGGTCCCTTAAGCCATCATGTGAAGTTTCATGGAAAGATGAGTCGTTTTTTA
648 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * *
1607 TTTTTCATGATTTCTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
713 TTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTT
* * **
1672 TGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTTGCAAA
778 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAA
* *
1737 AAACTCAAAGTGTATAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
843 AAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
1793 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
1858 TCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
1923 GTGCACAACCCCCCCCGCCCCTCCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCG
131 GTGCGCAACCCCCCCCGCCCC-CCAATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGACG
* * * ** *
1988 ATGCTTCGGCGATGGTACCTTGGGCGGAAAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
195 ATGCTCCGGCGATGGTGCCCTGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
** * * *
2053 GTGCACCCACAACCCTCTATTTGGTCTGATCTTACATTGGGAATGAACTCCGTATGCTTAGACTG
260 GTGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTG
* * *
2118 GGAATGAATTATGTATGCCTAAGTCAACCCATGAAACGATCGTGCGGGCACTCAACCGGCCAGAG
325 GGAATGAACTCTGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCACTCAACCGGCCAGAG
** * *** * * * * *
2183 GGTTAGGATGCGTAAGTTTGGGATTGGCT-GGGTCCCCCACTGTGTGCTGCTGATCCTGCTACT-
389 GGGCAGGATGCGCAAGCCGGGGATCGGCTCAGGTCCCCC-CTGCGTGCTACTGATCCTACTACTC
* *
2246 GCAACCCTTGGTTC-GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCAACG
453 GCAACCCTCGGTTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACG
* * * * * *
2310 AAACGAGCGGGCAGGCGGGCACTGCGGCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCAATA
518 AAACGAGCGGGCGGGCGGGCACTACGGCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATA
* * **
2375 GGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCTGTGCCAATGCCATTTTTATGGCTTG
583 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTG
* * *
2440 TAAATTCATACAATGGTCCCTTGAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCAA
648 TAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* *
2505 TTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGAATTTTTTT-AAATTTTTTCAGAAGGAGTT
713 TTTTTCACAATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTTAAAATTTTTTCAGAAGGAGTT
* * * *
2569 TTGGCCCTAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAATATTCAGCAA
777 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAA
* *
2634 AAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGA
842 AAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
2691 CACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTC
1 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
2756 TGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATAAT
66 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * ** * *
2821 GTGTGC-ACACCCCCCGGCCCCCAATCGTCGGAACCCAAATGCCGTCGATCAGGTTCTTTGGCAA
131 GTGCGCAACCCCCCCCGCCCCCCAATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGA
** * * *
2885 TGCTCCGATGATGGTGCCCTGGGC-GAAAAAAATGCGGCAGCAGCACATGCTCGAGCCCAGCATG
196 TGCTCCGGCGATGGTGCCCTGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * *
2949 TGTACCCACAACCCTCGGTCTGGTCCGATCTTACACTGGGAATGAACTCCATATGCTTAGACTAG
261 TGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGG
* * * * * *
3014 GAATGAACTCCGTATGCCTAAGTCAACCTAGGAAATGAGCATGCGGGCACTCAACCGGCCAAAAG
326 GAATGAACTCTGTATGCCTAAGTCAACCCA-GAAACGAGCGTGCGGGCACTCAACCGGCCAGAGG
* * * *
3079 GGCAGGATGCGCAAGCCGGGGATCGGCT-AGGTCCCCCTTCACGTGCTGCTGATCCTGCTAC-CG
390 GGCAGGATGCGCAAGCCGGGGATCGGCTCAGGTCCCCCCT-GCGTGCTACTGATCCTACTACTCG
* * * * * *
3142 TAACCCTCGG-TCTGGTCCAATCTTAGACTGAGAATGAACTCCGCATGCCTAAGCCAACCGATGA
454 CAACCCTCGGTTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGA
* * * *
3206 AACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGTGGCGGGATGTGCAAGCCGTGGATCGATAG
519 AACGAGCGGGCGGGCGGGCACTACGGCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAG
*
3271 GGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
584 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT
* *
3336 AAAATCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACGACTCGTTTTCTAT
649 AAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
3401 TTTTCACAATTTTTTAAAGTTTCTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGATTTTT
714 TTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTT
* * *
3466 GGCCCCAAACTTGGTAGATGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
779 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAA
* **
3531 AACTCAATGTGTACAGGATTTTGGTTTGACCATTTG--AAAAGTGT-GTCATTTCAGA
844 AACTCAAAGTGTACAGGATTTT-G--TGACCATTTGAAAAAAGTGTCCCCATTTCAGA
3586 CACTTTAAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA--GGGTGTGAGTT
1 CACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *** *
3649 CTCAAGGTTTGATGAGGGATAAGGGGAAAAATATAAGGGCTAAGTA-CAG--CCCATCGCACATC
65 CTCGAGGTTTGATGAGGGAT-AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * *
3711 ATGTGCGCACAACCCCTTCCGCCCCCGAATCGACGGGAACCCAAATG
129 ATGTGCG--CAACCCCCCCCGCCCCCCAATCGTC-GGAACCCAAATG
3758 TCGTTCATGA
Statistics
Matches: 2503, Mismatches: 318, Indels: 73
0.86 0.11 0.03
Matches are distributed among these distances:
890 9 0.00
891 277 0.11
892 463 0.18
893 51 0.02
894 46 0.02
895 608 0.24
896 171 0.07
897 294 0.12
898 569 0.23
899 15 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (898 bp):
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCAACCCCCCCCGCCCCCCAATCGTCGGAACCCAAATGCCGTCGGTCAGGTTCTCCGACGA
TGCTCCGGCGATGGTGCCCTGGGCAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCACCCACAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGG
GAATGAACTCTGTATGCCTAAGTCAACCCAGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGG
GCAGGATGCGCAAGCCGGGGATCGGCTCAGGTCCCCCCTGCGTGCTACTGATCCTACTACTCGCA
ACCCTCGGTTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAA
CGAGCGGGCGGGCGGGCACTACGGCGGCCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGG
CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAA
CTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
Found at i:3016 original size:26 final size:26
Alignment explanation
Indices: 2978--3030 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2968 CTGGTCCGAT
*
2978 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACTCCATATG
* *
3004 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCATATG
3030 C
1 C
3031 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCATATG
Found at i:5621 original size:896 final size:893
Alignment explanation
Indices: 3979--7396 Score: 4456
Period size: 896 Copynumber: 3.8 Consensus size: 893
3969 GATCGGCCGT
* *
3979 GGTTTAGGCACATCTTCATATTTCTGCCATGCCTATGCCATTTTTATGGCTT-TAAAAATC-TGA
1 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGT-AAATTCAT--
* * *
4042 ACACTGGTTCCTTAAGCCTTCATGTTGAAGTTTCATGGCAAGATCGACTCAATTTTCTA-TTTTC
63 ACAATGGTCCCTTAAGCCTTCATG-TGAAGTTTCATGGCAAGA-CGACTC-GTTTTCTATTTTTC
* *
4106 ACGATTTTTGAAAACTTTATTACGGTTCGGCACTGATTTTTTAAAA-TTTTTCAAAATGGAGTTT
125 ACGATTTTT-AAAACTTT-TTACGGTTCGGGA-T--TTTTTTAAAATTTTTTCAGAA-GGAGTTT
*
4170 TGGCCCCAAA-TT-GTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAAACAATTTCAGCT
184 TGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAACAA-TTCAGCT
4233 AAAAACTCGAAGTGTACAGGATTTTGGTGACCAATTTGAAAAACAGTGTCCCCATTTCAGACACT
247 AAAAACTCGAAGTGTACAGGATTTT-GTGACC-ATTTGAAAAA-AGTGTCCCCATTTCAGACACT
* * * *
4298 TTCAT-GCTAATGGCAGCAAGCCTGTAAAATCTCAAATGCCTCTTTAAAGGGGTGTGAGTTCTCG
309 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-CTCTTTAAGGGGGTGTGAGTTCTCG
*
4362 AGGTTTTGATGAGGGATAGGGTGCC-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCAATG
373 AGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC-ATG
* * * * *
4426 TGCGCCACACCCCCCGCCCCCCCAATC-CACTGAAACCCAAATTGTCGTCCGATCAGATTCTTCC
436 TGCG-CACACCCCCCG-CCCCCCAATCGC-C-GGAACCCCAA-TGCCG-CCGGTCAGGTTC-T-C
* * * * *
4490 CAACAATGCTTC-AGCGATGGTGGCC-CTAGGCCGACAAAAAATGCGGCACCAGCACATGCCCGA
493 CGACAATGCTCCGA-CGATGGT-GCCTC-AGG-CGAAAAAAAATGCAGCACCAGCACATGCCTGA
* * *
4553 GCCTAGCATGTGCACCCGCAACCCTCGGTCTGGTCTGATCTTACACTGGGAATGAACTCCATATG
554 GCCCAGCATGTGCACCCGCAACCCTCGGTCCGGTCCGA-CTTACACTGGGAATGAACTCCATATG
* ** * * * *
4618 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCCCTTAAC
618 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** *
4683 CGGCCAGAGGGGCAGGATGCCCAAGCCTGGGATCGGTCGGGTCCCCCCTGCGTGCTGCTGATCCT
683 CGGCCAGAGGGGCAGGATGCAGAAGCC-GGGATCGATCGGGTCCCCCCTGCGTGCTGCTGATCCT
* * * *
4748 CCTGCAACAACCCTCAATTTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
747 ACTGCCACAACCCTCAATTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
4813 TGACGAAACAAGCGGGCCGGCGGGCACTACTTCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGAT
812 AGACGAAACGAGCGGGCGGGCGGGCACTACTCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGAT
*
4878 TGATAGGGTGGTAGGTG
877 CGATAGGGTGGTAGGTG
* * * **
4895 GGCTTAGGTACATCTTCATATTTCTGCCATCCCAATGCTTTTTTTATGGCTTGTAAATTCATACA
1 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
4960 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCTTGGTAAGACGACTCGTTCTCTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
5025 TTTAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACT
131 TTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
*
5090 TGGTAGACGTGATCCTTGTATTTTTTTTGACATGCACAAAA-ATATTCAGCTAAAAACTCGAAGT
196 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACA-ATTCAGCTAAAAACTCGAAGT
* * * *
5154 GTACATGATTTCGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCA
260 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
5219 GCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATA
325 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
5284 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCCGCCC
390 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-CC
* *
5349 CCCCAATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCT
453 CCCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCT
**
5414 CAGGCGAAAAAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGG
518 CAGGCG-AAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGG
* **
5479 TCTGGTCCGA-TTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
582 TCCGGTCCGACTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
5543 AAGTCAACCCACAAAATGAGCGAGTGAGTGCTCAGCCGGCTAGAGGGGCAGGATGCAGAAGCCAG
647 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAGAAGCC-G
* ** * * * *
5608 GGATCGATCGGGTCCCCCCTGCATGCTGCCAATCCTACTGCCGCAACCCTCAATTCGGTCCGATC
711 GGATCGATCGGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACCCTCAATTTGATCTGATC
* * * *
5673 TTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGTGGGCACTA
776 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCACTA
* * * *
5738 CGCTGG-TAAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTG
841 CTCCGGCCAA-AGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * **
5791 GGTTTAGGCAACATCCTCATATTTTTGCTGTG-CAATGCCATTTTTATGGCTTGTAAATTCATAC
1 GGTTTAGGC-ACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
*
5855 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
65 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** *
5920 TTTCGAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
130 TTTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAC
** *
5985 TTATTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAACAATTCAGCTAAAAACTCGAAGT
195 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
*
6050 GTACAGGATTTTGTGACCAGTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
260 GTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
6115 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATA
325 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
6180 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTG-CCC
390 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCC
* * * * *
6244 CCAATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCTCA
455 CCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCTCA
* * *
6309 GGCGAAAAAAAATGTAGCACCAGCACATG-CTCGAGCTCAGCATGTGCACCCGCAACCCTTGGTC
520 GGCGAAAAAAAATGCAGCACCAGCACATGCCT-GAGCCCAGCATGTGCACCCGCAACCCTCGGTC
* * * * *
6373 CAGTCCAATCTTACACTGGGAATGAACTCCATACGCTGAGACTGGGAATGAACTCTGTATGCCTA
584 CGGTCCGA-CTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * ** * * *
6438 AGTCAACCCATAAAATGAGCCTGCGGGCGCTCAGCCAACCAGAGGGGCAAGATG-TGCAAGTCGA
648 AGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAG-AAGCCG-
* * * * * * * *
6502 GGATCTACCGGGTCCCCCCTGGGTGCTGTTGATCCTGCTACCACAACCCCTCAGTCT-AGTCTGA
711 GGATCGATCGGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAA-CCCTCAATTTGA-TCTGA
* * *
6566 TCTTA-CCTTGGGAATGAACTCCATATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGTA
774 TCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCA
* * *
6630 CTACTCCGACCAGAGA-GCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTG
838 CTACTCCGGCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
6685 GGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTTGTAAATTGATAC
1 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC-TTGTAAATTCATAC
* * * * *
6750 AATGGTCCCTTAAGCCTACATGTGAAGTTTCAGGGCAGGATGACTCGTTTTCTATTTTTCATGAT
65 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
**
6815 TTTTTGAACTTTTT-CTGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
130 TTTTAAAACTTTTTAC-GGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAA
* * * * * *
6879 CTAGGTAGACGTTATCCTTCTATTTTTGTTGGCATGCCCAAAA-AATTCAGCTAAAAACTCAAAG
194 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAG
* * * *
6943 TATACAGGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTATTGAC
259 TGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * * *
7008 AGCAAACCTGTAAAATCTCAAATGTTGTTTAA-GAGGTGTGAGTTCTTGAGGTTTGATAAGGGAT
324 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * * *
7072 AGGGGGCCAATATAAGGGCCAAATACCACCTCCCATCGCACATCTTGTGCGTACACCCCCCGCCC
389 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCC
* * * * *
7137 CCCAATCGCCCGAACCCCGATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATCGTGCCTC
454 CCCAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCTC
* * * *
7202 GGGCGAAAAAAAATGCAGCACCAGCACATGCGC-GATCCCAACATGTGCACCAGCAACCCTCGGT
519 AGGCGAAAAAAAATGCAGCACCAGCACATGC-CTGAGCCCAGCATGTGCACCCGCAACCCTCGGT
** * * * * * *
7266 CCGGTTTGATCTTACACTGAGAATGAACTTCGTATGCTTAGAGTGGGAATGCACTTCGTATGCCT
583 CCGGTCCGA-CTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
7331 AAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAAGGGCAGGATGCAAAAGCCGG
647 AAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAGAAGCCGG
7396 G
712 G
7397 TGTCACGAAC
Statistics
Matches: 2212, Mismatches: 257, Indels: 89
0.86 0.10 0.03
Matches are distributed among these distances:
891 2 0.00
892 59 0.03
893 173 0.08
894 526 0.24
895 250 0.11
896 649 0.29
897 20 0.01
898 69 0.03
899 18 0.01
900 2 0.00
901 10 0.00
902 3 0.00
903 12 0.01
904 45 0.02
905 87 0.04
906 39 0.02
907 5 0.00
908 58 0.03
909 31 0.01
910 18 0.01
911 11 0.00
912 14 0.01
913 20 0.01
914 16 0.01
915 22 0.01
916 51 0.02
917 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (893 bp):
GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTAAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTG
TACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCC
CAATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACAATGCTCCGACGATGGTGCCTCAG
GCGAAAAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCACCCGCAACCCTCGGTCCG
GTCCGACTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCAGAAGCCGGGATC
GATCGGGTCCCCCCTGCGTGCTGCTGATCCTACTGCCACAACCCTCAATTTGATCTGATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGGCACTACTCCG
GCCAAAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
Found at i:13757 original size:26 final size:26
Alignment explanation
Indices: 13721--13773 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13711 TCGGTCTAAT
13721 CTTACACTGGGAATGAAC-TCTGTATG
1 CTTACACTGGGAATGAACTTC-GTATG
*
13747 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTTCGTATG
13773 C
1 C
13774 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTTCGTATG
Found at i:14656 original size:26 final size:26
Alignment explanation
Indices: 14618--14673 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14608 CTGGTCTGAT
14618 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
14644 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
14670 CTTA
1 CTTA
14674 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:15542 original size:26 final size:26
Alignment explanation
Indices: 15513--15565 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15503 CTGGTCCGAT
15513 CTTACACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
15539 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
15565 C
1 C
15566 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:15910 original size:895 final size:894
Alignment explanation
Indices: 13015--18487 Score: 7550
Period size: 895 Copynumber: 6.1 Consensus size: 894
13005 CGGTTTGCTT
* *
13015 CAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGG
1 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
** **
13080 CACTACGTTGGCCA-AGAGGTAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
13144 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
13209 CTTAAGCCTTCATGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
*
13274 CTTTTTACGGTTCGAGA-TTTTGTAAAATTTTTTCAG-AGGCAGTTTTGGCCCCAAACTTGGTAG
261 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGG-AGTTTTGGCCCCAAACTTGGTAG
** * * *
13337 ATGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACATG
325 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGG
*
13402 ATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACT-GCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
* * *
13466 TGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGCTGAGGGATA-GGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * *
13530 AATATAAGGTCCAAGCACCAGCACCCATCGCGCATTATGTGCGCACA----C-CCCCTCAATCGT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCAATCGT
* * * ** *
13590 CGGAACCCCAA-AGACGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAAGTGAAA
585 CGGAACCCCAATA-CCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCG-AA
* *
13654 AAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCAACCCTCGAT-TCGGTCT
648 AAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCT-GGTCC
* * *
13718 AATCTTACACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
712 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * ** **
13783 CCCATAAAACGAGCATACGGGCGCTCAGCCGACCAAAGGGGCAAGATGCACAAGCCAAGGATCAC
777 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGG
* * * * * * *
13848 CCGGGTCCCCCCT-TCGTGCTACCGATCTTGTTGCTGCAACCCTCGGTCTGGTC
842 CTGGGTCCCCCCTGT-GTGCTACCAATCCTGCTACTGCAACCCTCAGTCTGATC
* * *
13901 CAATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGACGGGCGGG
1 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * ** * * *
13966 CACTATGCCAGTGAGAGAGGCGCGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTCG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
14031 GCACATCTTCATATTTCTACCATGCCAATGCCATTTTTCTGGCTTCTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
**
14096 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* ** * *
14161 CTTTTTACGGTTCGAGATTTTTTTTAAATTTTTTGTGAATGTGTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
14226 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTTGAAGTGTACAGGA
326 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* *
14291 TTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCTAGACACTTTAATGGCTACTGGTAGCAAACC
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATAGCTACTGGCAGCAAACC
* * *
14355 TGTAAAATCTAAAATGCTTTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGTGGGATAGGGGGC
455 TGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14420 CAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAAT
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCG-CCCCCCAAT
* *
14485 CGTCGGAACCCCAATACCGCCAGTCAGGTTCTCTGGCGATGCTTCGGCGATGGTGCCCCGGGCGA
582 CGTCGGAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCGA
* * *
14550 AAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTCT
647 AAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTCC
* * *
14615 GATCTTACACTAGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCTTAAGTCAA
712 GATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * ** * *
14680 CCCATGAAACGAGTGCACGGGCGCTCAGCTGGGTAGAGGGGCAAGATGCGCAAGTCAGGGATCGG
777 CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGG
* * *
14745 TTGGGTCCCCCCTGTGTGCTGCCAATCCTCCTACTGCAACCCTCAGTCTGATC
842 CTGGGTCCCCCCTGTGTGCTACCAATCCTGCTACTGCAACCCTCAGTCTGATC
* * **
14798 CAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGCCGGATGGG
1 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * *
14863 CACCACGCCTGCCAGAG-GGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTT
66 CACTACGCCGGCCAGAGAGG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
14927 GGCAAATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
130 GGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
14992 CCTTAAGCCTTAATGTGAAGTTTCATGGCACGACGACTCGTTTTATATTTTTCACGATTTTTGAA
195 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
15057 ACTTTTTACGATTC-AGGATTTTTTTTAAAATTTTTT-AGAAGGAGTTTTGGCCCCAAACTTGGA
260 ACTTTTTACGGTTCGA-GA-TTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
15120 ATACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACT
323 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC-
* *
15185 A-GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGCAA
387 AGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAA
* *
15249 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
15314 GCAAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCAA
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCGCCCCCCAA
* * *
15379 TCGTCAGAACCCCAATACCGCCAGTCAGGTTCTCTGGCGATGCTTCGGCGATGGTGCCCCGGGCG
581 TCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCG
* *
15444 AAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTTGGTCTGGTC
646 AAAAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTC
* *
15509 CGATCTTACACTAGGAATGAACTCCGTATGCTTACACTGGGAATGAACTCCGTATGCCTAAGTCA
711 CGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15574 ACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGTAAGTCGGGGATCA
776 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCG
* * * *
15639 GCTGGGTCGCCCCCTGTGTGCTGCCAATCCTCCTACTGTAACCCTCAGCCTGATC
841 GCTGGGTC-CCCCCTGTGTGCTACCAATCCTGCTACTGCAACCCTCAGTCTGATC
* * *
15694 CAATCTT-GCACTGAGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGACGG
1 CAATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* * * *
15758 GCACCACACCGGCCAGAG-GGACGGGATGCGCAATCCGTGGATCGATAAGGTGGTAGGTGGGTTT
65 GCACTACGCCGGCCAGAGAGG-CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15822 TGGAAAATCTTCATATTTCTGTCATGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGT
129 AGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
15886 CCCTTAAGCCTTCATGTTAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
194 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
*
15951 AACTTTTTATC-GTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGT
259 AACTTTTTA-CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
*
16015 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
323 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
16080 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAA
388 GGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAA
* * * *
16145 CCTGTAAAATCTAAAATGATCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
16210 CCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACACCCCTGCCCCCCAATC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCAATC
** * * * * * *
16275 GTCGGAACCCCAACGCTGTCGATCAGGTTCTCTGGCGATGCTCCAGCGATTGTGCCCCGAGCGAA
583 GTCGGAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCGAA
* * * * * * *
16340 AAAAAATATGGCACCAGCACTTGCTCAAGCCCAGCATGCGCACTCACAACCCTCGGTCTGGTCCG
648 AAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTCCG
* * *
16405 ATCTTACACTGGGAATGAACTCCATATGGTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
713 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
**
16470 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGC
778 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGC
* ** *
16535 TGGGTCCCCCCTGTGTGCTACCAATCCTACTA-TGGCAACCCTTGGTCTGGTC
843 TGGGTCCCCCCTGTGTGCTACCAATCCTGCTACT-GCAACCCTCAGTCTGATC
** * * * *
16587 TGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCTAACCGACGAAACGAGCTGGCGGGCGGG
1 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
*
16652 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
16717 GCATATCTTCATATTTCTTCCATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
16782 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGGCTCATTTTCTATTTTTCACGATTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
16847 CTCTTTACAGTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
16912 CATGATCTTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGA
326 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* * *
16976 TTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCT
* *
17041 GTAAACTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** * *
17106 ATATAAGGGCCAAGTAGTAGCACCCATCACACATCATCCGTGCACAC-CCCCCGCCCCCCCAATC
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT--GTGCGCACACCCCCG-CCCCCCAATC
* * *
17170 ATCGGAACCCCAATGCCGTCGGTCAGGTTCTC---CGA--------CGATGGTGCCCCGGGCGAA
583 GTCGGAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCGAA
* * * *
17224 AAAAAATATGGCACCAGCACATGCCCAAGCCTAGCATGTGCACCCGCAACCCTCGATCCGATCCG
648 AAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTCCG
* * * *
17289 ATCTTACACTGGGAATGAACTCTGCATGCTTAGACTGGGAATGAACTCCGTATGACTAAGCCAAC
713 ATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * ** * * * *
17354 CCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCATGACACACAAGCTGAGGATC-GA
778 CCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGC
* * * *
17418 TCGGGTGCCCCCT-TACGCGCTACCGATCCTGCTACTGCAACCCTCAGTCTGGTC
843 T-GGGTCCCCCCTGT--GTGCTACCAATCCTGCTACTGCAACCCTCAGTCTGATC
** * * * * *
17472 CGGTCTTAGACTGGGAATGAACTCCATATGCCTAATCCAACCGACAAAACGAGTGGGCGGGCAGG
1 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * *
17537 TACTACGTCGGCCAGAGAGGCGGGATGTGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * * *
17602 GCACTTCTTCATATTTCTACCGTGCCAATCCCATTTTTATGGCTTGTAAATTCATAGAATGGTCC
131 GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
17667 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCATGAGTTTTGAAA
196 CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
17732 CTTTTTATGGTTCGAG-TTTTTTTAAAATTTTTTTAGAATGCGTTTTGGCCCCAAACTTGGTAGA
261 CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
17796 CATGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTGAGCTAAAAACTCAAAGTGCATAGGA
326 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
* * *
17861 TGTTGTGACAAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGTAAACC
391 TTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
* *
17926 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGATTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
17991 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-------CCCCCAATCGT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCAATCGT
* * * * * *
18049 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCTCGGGCGAAAA
585 CGGAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAA
* *
18114 AAAATGTGGCA-CAGCACATGCCCGAGCCCAGCATGTGCACTCGCAACCCTCGATCTGGTCCGAT
650 AAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTCCGAT
* * *
18178 CTTACACTGGGAATGAACTCCATATGCCTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
715 CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
** * * * *
18243 ATGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAAGGGTAGGATACGCAAGCCGGGGATCGGCTG
780 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTG
* * * * ** ** **
18308 GGTCCCCCCCTGAGTGCTGCCGATACTGCTACCACAACCCTTGGTCCAAAT-
845 GGT-CCCCCCTGTGTGCTACCAATCCTGCTACTGCAACCCTCAGT-CTGATC
* * * * *
18359 CGATCTTAGACAGGGAATGAACTTCGTATGCCAAAGCCAACCGATGAAACGAGCGGGCAGGGCGG
1 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCGG
* * * * *
18424 GCACTACGCCGGCTAGAGAGGCAGGATGCGCAAGCCATGGATTGTTAGGGTGGTAGGTGGGTTT
65 GCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
18488 TGTGACCATT
Statistics
Matches: 4104, Mismatches: 424, Indels: 116
0.88 0.09 0.02
Matches are distributed among these distances:
877 40 0.01
880 2 0.00
883 3 0.00
884 259 0.06
885 328 0.08
886 217 0.05
887 423 0.10
888 243 0.06
889 32 0.01
890 31 0.01
891 48 0.01
892 4 0.00
893 380 0.09
894 437 0.11
895 662 0.16
896 289 0.07
897 621 0.15
898 84 0.02
899 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
CACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
CTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCAATCGTC
GGAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGGCGAAAAA
AAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGATCTGGTCCGATC
TTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAAGATGCGCAAGCCGGGGATCGGCTGG
GTCCCCCCTGTGTGCTACCAATCCTGCTACTGCAACCCTCAGTCTGATC
Found at i:18219 original size:26 final size:26
Alignment explanation
Indices: 18183--18233 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
18173 CCGATCTTAC
18183 ACTGGGAATGAACTCCATATGCCTAG
1 ACTGGGAATGAACTCCATATGCCTAG
* *
18209 ACTGGGAATGAACTTCGTATGCCTA
1 ACTGGGAATGAACTCCATATGCCTA
18234 AGTCAACCCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (26 bp):
ACTGGGAATGAACTCCATATGCCTAG
Found at i:20214 original size:881 final size:883
Alignment explanation
Indices: 18485--20347 Score: 2527
Period size: 882 Copynumber: 2.1 Consensus size: 883
18475 GGTAGGTGGG
* * *
18485 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGGAAGCAAACCT
*
18550 GTAAAATCTCAAATGCTCTTTAAGGGGTGTGCGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAA
66 GTAAAATCTCAAATGCTCTTTAA-------GCG---T-GAGGTTTGATGAGGGATAGGGGGCCAA
* * * * *
18615 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCCCCCCAATTATCG
120 CACAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCCCAATCATCG
* * * * * *
18680 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGAAGATGGTGTCTCGGGCAAAAAAA
185 GAACCCCAATGCCACCGATAAGGTTATCCGACGATGCTCCGAAGATGGTGCCTCAGGCAAAAAAA
*** * * *
18745 AATTTGGCACCAGCACATTCTCGAGACCAGTATGTGCACCCACAACCCTCGATCCGGTCCGATCT
250 AATACAGCACCAGCACATGCTCGAGACCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCT
18810 TACACTCAAAATGAACTTCGGATGCTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAAACCAC
315 TACACTCAAAATGAACTTCGGATGCTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAAACCAC
* * *
18875 AAAACAAGCGTGCGGGAGCTCAGTCGGCCAGAGGGGTAGGATGCATAAGCCGGAGATCGATCGGG
380 AAAACAAGCGTGCGGGAGCTCAGTCGACCAGAGGGGCAGGATGCACAAGCCGGAGATCGATCGGG
* ** * ** *
18940 TCCCCCTTGTATGCTGCCGATCCTGTTACCGCAACCCTCTATCCGGTCTGATCTTAGACTAGGAG
445 TCCCCCCTACATGCTGCCGATCCTGCTACCGCAACCCTCTATCCGGTCCAATCTTAGACTAGGAA
*
19005 TGAACTATGTATGCTTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCACTACGCCAGCCAGAG
510 TGAACTATGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCACTACGCCAGCCAGAG
* * *
19070 AGGTGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTCGGCACATCTTCATATTTC
575 AGGTGGGAAGCACAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTC
* ** *
19135 TACCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAAGGGTCCCTTAAGCCTTCATGTGA
640 TACCATACCAACACCATTTTTATCGCTTCTAAATTCATACAAGGGTCCCTTAAGCCTTCATGTGA
* * *
19200 AGTTTTATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCAGGA
705 AGTTTCAAGGCAAGACGACTCCTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGA
* * * * *
19265 TTTTTTTAAAATTTTTTGTGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
770 TTTTTTTAAAATTTTTTGAGAAGGTGTTTTCGCCCAAAACTTGATAGACATGATCCTTGTATTTT
19330 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA-GGA
835 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGGA
* *
19378 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGGTACTGGTAGCAAACCT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGGAAGCAAACCT
* * *
19443 GTAAAATTTGAAATGCTCTTT-A-CG-GAGGTTTGATGTGGGATAGGGGGCCAACACAAAGGCCA
66 GTAAAATCTCAAATGCTCTTTAAGCGTGAGGTTTGATGAGGGATAGGGGGCCAACACAAAGGCCA
* *
19505 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCGGCCCCCAATCGTGGGAACCCCA
131 AGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC--CCCCCAATCATCGGAACCCCA
* * *
19570 ATGCCACCGATAAGGTTATCCGGCGATGCTCCGACGATGGTGCC-CTAGGCGAAAAAAAATACAG
193 ATGCCACCGATAAGGTTATCCGACGATGCTCCGAAGATGGTGCCTC-AGGCAAAAAAAAATACAG
* ** *
19634 CACCAGCACATGCTCGAGTCCAGCATGTGCACCTGCAACCCTC-AGTCCGATCCGATCTTACATT
257 CACCAGCACATGCTCGAGACCAGCATGTGCACCCACAACCCTCGA-TCCGATCCGATCTTACACT
*** * * **
19698 GGGAATGAAC-TCTGTATGCTTAGACTAG-GAATGAACTAC-GTATGCCTAAGTCAACCCATGAA
321 CAAAATGAACTTC-GGATGCTTAGACT-GTGAATGAACT-CTGTATGCCTAAGTCAAACCACAAA
* *
19760 ACAAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCAGGATG-AGCAAGCCGG-GGTCGATCGGGTC
383 ACAAGCGTGCGGGAGCTCAGTCGACCAGAGGGGCAGGATGCA-CAAGCCGGAGATCGATCGGGTC
* * * * * *
19823 CCCCCTACGTGCTGCTGATCTTGCTACCGCAACCCTCTATGCGTTCCAATCTTAGACTGGGAATG
447 CCCCCTACATGCTGCCGATCCTGCTACCGCAACCCTCTATCCGGTCCAATCTTAGACTAGGAATG
* * *
19888 AACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAG
512 AACTATGTATGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCACTACGCCAGCCAGAGAG
* * *
19953 GTGGGAAGCGCAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTTTG
577 GTGGGAAGCACAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTA
* * * * *
20018 CCATACCAACACCTTTTTTATCGCTTGTAAATTCATACAATGGTTCCTTAGGCCTTCATGTGAAG
642 CCATACCAACACCATTTTTATCGCTTCTAAATTCATACAAGGGTCCCTTAAGCCTTCATGTGAAG
* ** *
20083 TTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACTGTTC-GTGAT
707 TTTCAAGGCAAGACGACTCCTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAG-GAT
20147 TTTTTTAAAAAATTTTTT-AGAAGGAT-TTTTCGCCCAAAACTTGATAGACATGATCCATT-TAT
771 TTTTTT--AAAATTTTTTGAGAAGG-TGTTTTCGCCCAAAACTTGATAGACATGATCC-TTGTAT
20209 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGGA
832 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGGA
* *
20261 TTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGAATACTGGCAAGCAAACT
1 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGG-AAGCAAACC
*
20325 TGT-AAACCTCAAATGCTCTTTAA
65 TGTAAAATCTCAAATGCTCTTTAA
20348 AGGGGTGTGA
Statistics
Matches: 857, Mismatches: 96, Indels: 44
0.86 0.10 0.04
Matches are distributed among these distances:
879 69 0.08
880 5 0.01
881 306 0.36
882 349 0.41
883 44 0.05
884 2 0.00
892 1 0.00
893 81 0.09
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (883 bp):
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGGAAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGCGTGAGGTTTGATGAGGGATAGGGGGCCAACACAAAGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCCCAATCATCGGAACCCCAATG
CCACCGATAAGGTTATCCGACGATGCTCCGAAGATGGTGCCTCAGGCAAAAAAAAATACAGCACC
AGCACATGCTCGAGACCAGCATGTGCACCCACAACCCTCGATCCGATCCGATCTTACACTCAAAA
TGAACTTCGGATGCTTAGACTGTGAATGAACTCTGTATGCCTAAGTCAAACCACAAAACAAGCGT
GCGGGAGCTCAGTCGACCAGAGGGGCAGGATGCACAAGCCGGAGATCGATCGGGTCCCCCCTACA
TGCTGCCGATCCTGCTACCGCAACCCTCTATCCGGTCCAATCTTAGACTAGGAATGAACTATGTA
TGCCTAAGCCAACCGACGAAATGAACGGGCGGGCGGGCACTACGCCAGCCAGAGAGGTGGGAAGC
ACAAGCCATGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACCATACCAA
CACCATTTTTATCGCTTCTAAATTCATACAAGGGTCCCTTAAGCCTTCATGTGAAGTTTCAAGGC
AAGACGACTCCTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTTAAAA
TTTTTTGAGAAGGTGTTTTCGCCCAAAACTTGATAGACATGATCCTTGTATTTTTTTTGGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGGA
Done.