Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168448.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_66, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135078
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
File 2 of 4
Found at i:37033 original size:12 final size:13
Alignment explanation
Indices: 37002--37043 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
36992 AAGATAGTAT
*
37002 ATAATAAATATTA
1 ATAATTAATATTA
*
37015 CTAATTAAT-TTA
1 ATAATTAATATTA
37027 ATAATTAATATATA
1 ATAATTAATAT-TA
37041 ATA
1 ATA
37044 TATATTAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
12 11 0.46
13 8 0.33
14 5 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (13 bp):
ATAATTAATATTA
Found at i:37035 original size:29 final size:30
Alignment explanation
Indices: 37003--37071 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 30
36993 AGATAGTATA
*
37003 TAATAAATATTACTA-ATTAAT-TTAATAAT
1 TAATAAATATTA-TATATTAATAGTAATAAT
* * *
37032 TAATATATAATATATATTAATAGTAATAGT
1 TAATAAATATTATATATTAATAGTAATAAT
*
37062 TATTAAATAT
1 TAATAAATAT
37072 AATAACTATG
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
28 2 0.06
29 16 0.52
30 13 0.42
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (30 bp):
TAATAAATATTATATATTAATAGTAATAAT
Found at i:37074 original size:16 final size:16
Alignment explanation
Indices: 37030--37075 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
37020 TAATTTAATA
37030 ATTAATATATAATATAT
1 ATTAA-ATATAATATAT
37047 ATT-AATAGTAATAGT-T
1 ATTAAATA-TAATA-TAT
37063 ATTAAATATAATA
1 ATTAAATATAATA
37076 ACTATGATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 3 0.12
16 15 0.58
17 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (16 bp):
ATTAAATATAATATAT
Found at i:37843 original size:18 final size:18
Alignment explanation
Indices: 37820--37861 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
37810 TTATTAGTGA
* *
37820 ATATTACTAGTTATACAT
1 ATATTACTAATAATACAT
*
37838 ATATTATTAATAATACAT
1 ATATTACTAATAATACAT
37856 ATATTA
1 ATATTA
37862 TAAAATATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.45
Consensus pattern (18 bp):
ATATTACTAATAATACAT
Found at i:38311 original size:38 final size:38
Alignment explanation
Indices: 38261--38356 Score: 100
Period size: 37 Copynumber: 2.7 Consensus size: 38
38251 ATTGAACAAT
38261 AATATTAT-TTATTATTTAT-AGTT-TAAATTAATATAA
1 AATATTATATTATTATTTATAAGTTATAAATT-ATATAA
* *
38297 ATTAATTATATTA-T-TTTATAATTTATAAATTATATAA
1 AAT-ATTATATTATTATTTATAAGTTATAAATTATATAA
38334 AATATTATA-TATTA--TATAAGTTA
1 AATATTATATTATTATTTATAAGTTA
38357 ATAATATTTA
Statistics
Matches: 50, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
35 10 0.20
36 14 0.28
37 17 0.34
38 9 0.18
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (38 bp):
AATATTATATTATTATTTATAAGTTATAAATTATATAA
Found at i:38339 original size:28 final size:27
Alignment explanation
Indices: 38291--38374 Score: 73
Period size: 28 Copynumber: 3.1 Consensus size: 27
38281 GTTTAAATTA
* * *
38291 ATATAAATTAATTATATTATTTTATAATT
1 ATATAAATTAA-TAAAATATTATAT-ATT
38320 -TATAAATTATATAAAATATTATATATT
1 ATATAAATTA-ATAAAATATTATATATT
* * *
38347 ATATAAGTTAATAATAT-TTAAATATT
1 ATATAAATTAATAAAATATTATATATT
38373 AT
1 AT
38375 TATATGTCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 10 0.21
27 9 0.19
28 27 0.57
29 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (27 bp):
ATATAAATTAATAAAATATTATATATT
Found at i:38456 original size:8 final size:8
Alignment explanation
Indices: 38443--38522 Score: 55
Period size: 8 Copynumber: 10.4 Consensus size: 8
38433 TTATTTTTTA
38443 TTAATTAT
1 TTAATTAT
38451 TTAATTAT
1 TTAATTAT
38459 TTAATTA-
1 TTAATTAT
38466 TT-ATTGATT
1 TTAATT-A-T
38475 TTAA-TA-
1 TTAATTAT
* *
38481 ATAA-CAT
1 TTAATTAT
38488 TTAATTAT
1 TTAATTAT
*
38496 TT-ATTAA
1 TTAATTAT
38503 TTAATTAT
1 TTAATTAT
*
38511 TATTATTAT
1 T-TAATTAT
38520 TTA
1 TTA
38523 TTTTAATGTT
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
6 7 0.12
7 12 0.21
8 26 0.46
9 10 0.18
10 1 0.02
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (8 bp):
TTAATTAT
Found at i:38989 original size:21 final size:21
Alignment explanation
Indices: 38968--39006 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
38958 AAAGTTAAAT
38968 TTAATA-AAATTTATTAATAA
1 TTAATATAAATTTATTAATAA
* *
38988 TTATTATATATTTATTAAT
1 TTAATATAAATTTATTAAT
39007 TATAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TTAATATAAATTTATTAATAA
Found at i:39205 original size:19 final size:18
Alignment explanation
Indices: 39183--39239 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 18
39173 ATTAATAACT
39183 TAATTATTAATATTTATTA
1 TAATTATTAATA-TTATTA
*
39202 TAATTA-T-ATATAATTA
1 TAATTATTAATATTATTA
39218 T-ATTATTTAATAATTATTA
1 TAATTA-TTAAT-ATTATTA
39237 TAA
1 TAA
39240 AATTTATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
15 4 0.13
16 6 0.19
17 4 0.13
18 3 0.10
19 13 0.42
20 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATTATTAATATTATTA
Found at i:39213 original size:10 final size:9
Alignment explanation
Indices: 39183--39239 Score: 55
Period size: 10 Copynumber: 6.3 Consensus size: 9
39173 ATTAATAACT
39183 TAATTATTAA
1 TAATTATT-A
*
39193 TATTTATTA
1 TAATTATTA
39202 TAATTATATA
1 TAATTAT-TA
39212 TAATTA-TA
1 TAATTATTA
* *
39220 TTATT-TAA
1 TAATTATTA
39228 TAATTATTA
1 TAATTATTA
39237 TAA
1 TAA
39240 AATTTATATG
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
8 11 0.29
9 12 0.32
10 15 0.39
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TAATTATTA
Found at i:39861 original size:12 final size:12
Alignment explanation
Indices: 39831--39872 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
39821 TATTATTGAA
*
39831 ATAATAATTA-T
1 ATAATATTTATT
39842 ATAATATTTATT
1 ATAATATTTATT
*
39854 ATATTATTTATT
1 ATAATATTTATT
39866 ATTAATA
1 A-TAATA
39873 ATAATTATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 9 0.35
12 13 0.50
13 4 0.15
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATAATATTTATT
Found at i:40237 original size:21 final size:21
Alignment explanation
Indices: 40205--40296 Score: 86
Period size: 21 Copynumber: 4.5 Consensus size: 21
40195 ATATCTAAAA
40205 TATAATATTAATAATTATTTAT
1 TATAA-ATTAATAATTATTTAT
* *
40227 TATAAGTTAATAATAATTTA-
1 TATAAATTAATAATTATTTAT
*
40247 TATTAAATTATTAATT-TTATAT
1 TA-TAAATTAATAATTATT-TAT
*
40269 TAT-AATTTATAATTA--TAT
1 TATAAATTAATAATTATTTAT
40287 TATAAATTAA
1 TATAAATTAA
40297 CATAATATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
18 6 0.11
19 5 0.09
20 13 0.23
21 26 0.46
22 7 0.12
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (21 bp):
TATAAATTAATAATTATTTAT
Found at i:40261 original size:18 final size:19
Alignment explanation
Indices: 40239--40291 Score: 67
Period size: 18 Copynumber: 2.8 Consensus size: 19
40229 TAAGTTAATA
40239 ATAATTTATATTA-AA-TT
1 ATAATTTATATTATAATTT
40256 ATTAATTTTATATTATAATTT
1 A-TAA-TTTATATTATAATTT
40277 ATAA-TTATATTATAA
1 ATAATTTATATTATAA
40292 ATTAACATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
17 1 0.03
18 14 0.44
19 9 0.28
20 5 0.16
21 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATAATTTATATTATAATTT
Found at i:40270 original size:42 final size:42
Alignment explanation
Indices: 40211--40290 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
40201 AAAATATAAT
40211 ATTAATAATTATTTATTATAAGTTAATAATAAT-TTATATTAA
1 ATTAATAATTATTTATTATAA-TTAATAATAATATTATATTAA
* * *
40253 ATTATTAATT-TTATATTATAATTTATAATTATATTATA
1 ATTAATAATTATT-TATTATAATTAATAATAATATTATA
40291 AATTAACATA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
41 11 0.33
42 22 0.67
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (42 bp):
ATTAATAATTATTTATTATAATTAATAATAATATTATATTAA
Found at i:40304 original size:18 final size:18
Alignment explanation
Indices: 40224--40306 Score: 51
Period size: 18 Copynumber: 4.3 Consensus size: 18
40214 AATAATTATT
*
40224 TATTATAAGTTAATAATAA
1 TATTATAAATT-ATAATAA
* *
40243 TTTATATTAAATTATTAATTTTA
1 TAT-TA-TAAATTA-TAA--TAA
* *
40266 TATTATAATTTATAATTA
1 TATTATAAATTATAATAA
40284 TATTATAAATTA-ACATAA
1 TATTATAAATTATA-ATAA
40302 TATTA
1 TATTA
40307 AATAAGTATT
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
17 1 0.02
18 22 0.43
19 2 0.04
20 6 0.12
21 14 0.27
22 2 0.04
23 4 0.08
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (18 bp):
TATTATAAATTATAATAA
Found at i:40386 original size:24 final size:23
Alignment explanation
Indices: 40345--40389 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
40335 ATAATTCAAT
40345 TTAAATTTAATATAAATTATTAC
1 TTAAATTTAATATAAATTATTAC
*
40368 TTAAATTATAATATTAATTATT
1 TTAAATT-TAATATAAATTATT
40390 TATATAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAAATTTAATATAAATTATTAC
Found at i:40446 original size:21 final size:21
Alignment explanation
Indices: 40422--40477 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
40412 TTATTTATTA
*
40422 TATATTAATTATAATTTTAGT
1 TATATTAATTATAATTTTAAT
*
40443 TATATTAATTATTAAATTTAAT
1 TATATTAATTA-TAATTTTAAT
40465 T-TATT-ATTATAAT
1 TATATTAATTATAAT
40478 ATATTAATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
19 3 0.10
20 4 0.13
21 15 0.48
22 9 0.29
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (21 bp):
TATATTAATTATAATTTTAAT
Found at i:40810 original size:13 final size:12
Alignment explanation
Indices: 40762--40817 Score: 51
Period size: 13 Copynumber: 4.4 Consensus size: 12
40752 TTATAATTAT
40762 TATAATTATATA
1 TATAATTATATA
*
40774 CT-TAATTAAATA
1 -TATAATTATATA
*
40786 TATTATTGATATA
1 TATAATT-ATATA
40799 TAATAATTATATA
1 T-ATAATTATATA
40812 TTATAA
1 -TATAA
40818 ACAAATATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
11 1 0.03
12 13 0.37
13 15 0.43
14 6 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TATAATTATATA
Found at i:41500 original size:181 final size:179
Alignment explanation
Indices: 41171--41500 Score: 387
Period size: 181 Copynumber: 1.8 Consensus size: 179
41161 GGCAAGCACA
* * * * *
41171 TTTATTTTTTAAACTCTTACTTATTAATTTTTAAAAAATTATTAAATTAATATTATTTTTATCTG
1 TTTAGTTTTTAAACTCTTACTTAATAATTTTTAAAAAATTAGTAAAGTAATATTATTTTTATCAG
* * * *
41236 AATCAGTTTATATGATAAAAAAACAAATGTTTTATGACAAAACAAAGATCATAATGATTTGAGAT
66 AATAAGTTTATAT-ATAAAAAAACAAATGTTTTATGACAAAACAAAGATCAAAATAATTTGAGAA
* *
41301 TAATATTTGTTCAAATAGTCATAATTATTAGAACTACTTTGAAAAACAAC
130 CAATAATTGTTCAAATAGTCATAATTATTAGAACTACTTTGAAAAACAAC
* * * *
41351 TTTAGTTTTTAAATCTCTTGCTTAATAATTTTTAAAATATTAGTAAAGTAGTATTATTTTATTTC
1 TTTAGTTTTTAAA-CTCTTACTTAATAATTTTTAAAAAATTAGTAAAGTAATATTATTTT-TATC
* ** * * *
41416 AGAA-AAGTTTTTAT-TAACTGAAACAATTGTTTTATGACAAAACAAAATATCAAAATAATTTTA
64 AGAATAAGTTTATATATAA-AAAAACAAATGTTTTATGACAAAAC-AAAGATCAAAATAATTTGA
*
41479 -AACAGATAATTGTTTAAATAGT
127 GAACA-ATAATTGTTCAAATAGT
41501 AATATCTATT
Statistics
Matches: 123, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
179 3 0.02
180 36 0.29
181 78 0.63
182 6 0.05
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (179 bp):
TTTAGTTTTTAAACTCTTACTTAATAATTTTTAAAAAATTAGTAAAGTAATATTATTTTTATCAG
AATAAGTTTATATATAAAAAAACAAATGTTTTATGACAAAACAAAGATCAAAATAATTTGAGAAC
AATAATTGTTCAAATAGTCATAATTATTAGAACTACTTTGAAAAACAAC
Found at i:41622 original size:22 final size:21
Alignment explanation
Indices: 41581--41651 Score: 60
Period size: 22 Copynumber: 3.5 Consensus size: 21
41571 GATAAATTAG
*
41581 TATT-ATTAATTATTTATAATA
1 TATTAATTAATT-TATATAATA
*
41602 TATTAATTAATTTATACTAATT
1 TATTAATTAATTTATA-TAATA
* *
41624 TAATAACT-A-TTATATAATA
1 TATTAATTAATTTATATAATA
41643 TA-TAATTAA
1 TATTAATTAA
41652 ACTATTTAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
18 4 0.10
19 7 0.17
20 5 0.12
21 8 0.20
22 17 0.41
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (21 bp):
TATTAATTAATTTATATAATA
Found at i:41698 original size:53 final size:55
Alignment explanation
Indices: 41625--41733 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 55
41615 ATACTAATTT
41625 AATAACTATTATATAATATATAATTA-AACTATTTA-ATTAATTTAAATAA-TTAATAA
1 AATAACTATTATAT-ATATATAA-TAGAA-TATTTATATTAA-TTAAATAATTTAATAA
41681 AATAACTATTA-AT-TATATAATAGTAATATTTATATTAATTAAATAATTTAATA
1 AATAACTATTATATATATATAATAG-AATATTTATATTAATTAAATAATTTAATA
41734 TTTAAATGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
52 2 0.04
53 21 0.43
54 13 0.27
55 2 0.04
56 11 0.22
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (55 bp):
AATAACTATTATATATATATAATAGAATATTTATATTAATTAAATAATTTAATAA
Found at i:41719 original size:26 final size:25
Alignment explanation
Indices: 41687--41737 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
41677 ATAAAATAAC
*
41687 TATTAATTATATAATAGTAATATTTA
1 TATTAATTAAATAAT-GTAATATTTA
*
41713 TATTAATTAAATAATTTAATATTTA
1 TATTAATTAAATAATGTAATATTTA
41738 AATGGAGACG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (25 bp):
TATTAATTAAATAATGTAATATTTA
Found at i:41900 original size:28 final size:27
Alignment explanation
Indices: 41869--41944 Score: 75
Period size: 28 Copynumber: 2.7 Consensus size: 27
41859 CAATATCAAT
41869 TTATTTAATAATTAATATTAATACTTAA
1 TTATTTAATAATTAATATTAAT-CTTAA
*
41897 TTATATTAAT-ATTAATA-TAATTTTAA
1 TTAT-TTAATAATTAATATTAATCTTAA
* *
41923 TAATTTATAACAATTAATATTA
1 TTA-TT-TAATAATTAATATTA
41945 TAATTATATA
Statistics
Matches: 40, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
26 7 0.17
27 8 0.20
28 18 0.45
29 7 0.17
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (27 bp):
TTATTTAATAATTAATATTAATCTTAA
Found at i:41904 original size:16 final size:16
Alignment explanation
Indices: 41833--41924 Score: 63
Period size: 16 Copynumber: 6.0 Consensus size: 16
41823 TATTATCAAT
*
41833 TTAATATAAGATT-ATA
1 TTAAT-TAATATTAATA
*
41849 TTAATTAAT-TCAATA
1 TTAATTAATATTAATA
*
41864 TCAATT--TATT--TA
1 TTAATTAATATTAATA
*
41876 ATAATTAATATTAATA
1 TTAATTAATATTAATA
41892 CTTAATT-ATATTAATA
1 -TTAATTAATATTAATA
*
41908 TTAATATAATTTTAATA
1 TTAAT-TAATATTAATA
41925 ATTTATAACA
Statistics
Matches: 59, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
12 6 0.10
13 1 0.02
14 6 0.10
15 16 0.27
16 17 0.29
17 13 0.22
ACGTcount: A:0.47, C:0.03, G:0.01, T:0.49
Consensus pattern (16 bp):
TTAATTAATATTAATA
Found at i:42049 original size:14 final size:15
Alignment explanation
Indices: 42005--42065 Score: 56
Period size: 14 Copynumber: 4.1 Consensus size: 15
41995 TATCTATTTA
42005 TATAAGTATTAAT-A-
1 TATAA-TATTAATAAT
*
42019 TATTAATATTATTTAAT
1 TA-TAATATTA-ATAAT
*
42036 TATAA-ATTTATAAT
1 TATAATATTAATAAT
42050 TATAATATTAATAAT
1 TATAATATTAATAAT
42065 T
1 T
42066 TGTTAAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
14 16 0.42
15 16 0.42
16 4 0.11
17 2 0.05
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (15 bp):
TATAATATTAATAAT
Found at i:42114 original size:14 final size:14
Alignment explanation
Indices: 42097--42143 Score: 51
Period size: 14 Copynumber: 3.2 Consensus size: 14
42087 CTATTAATAA
42097 AATATTATAAAAAT
1 AATATTATAAAAAT
42111 AATATTATAATATAAT
1 AATATTATAA-A-AAT
*
42127 AAT-TATATTAAAAT
1 AATAT-TATAAAAAT
42141 AAT
1 AAT
42144 TTAAAACTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
14 16 0.55
15 3 0.10
16 10 0.34
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATATTATAAAAAT
Found at i:42124 original size:19 final size:19
Alignment explanation
Indices: 42069--42141 Score: 55
Period size: 19 Copynumber: 4.0 Consensus size: 19
42059 AATAATTTGT
42069 TAAAAATAAT-TTATAATA
1 TAAAAATAATATTATAATA
** *
42087 CTATTAATAA-A--ATATTA
1 -TAAAAATAATATTATAATA
42104 TAAAAATAATATTATAATA
1 TAAAAATAATATTATAATA
* * *
42123 TAATAATTATATTAAAATA
1 TAAAAATAATATTATAATA
42142 ATTTAAAACT
Statistics
Matches: 41, Mismatches: 9, Indels: 8
0.71 0.16 0.14
Matches are distributed among these distances:
16 7 0.17
17 6 0.15
19 28 0.68
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAAATAATATTATAATA
Found at i:42144 original size:14 final size:13
Alignment explanation
Indices: 42071--42144 Score: 50
Period size: 14 Copynumber: 5.7 Consensus size: 13
42061 TAATTTGTTA
42071 AAAATAATT-TAT
1 AAAATAATTATAT
*
42083 AATACT-ATTA-AT
1 AA-AATAATTATAT
42095 AAAAT-ATTATA-
1 AAAATAATTATAT
42106 AAAATAATATTATAAT
1 AAAAT-A-ATTAT-AT
*
42122 ATAATAATTATATT
1 AAAATAATTATA-T
42136 AAAATAATT
1 AAAATAATT
42145 TAAAACTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
11 11 0.22
12 10 0.20
13 3 0.06
14 19 0.39
15 2 0.04
16 4 0.08
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAATAATTATAT
Found at i:42281 original size:17 final size:17
Alignment explanation
Indices: 42248--42281 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
42238 TTATTTAGTG
*
42248 TAAATATTAATATATTA
1 TAAATATTAATAAATTA
*
42265 TAAATATTATTAAATTA
1 TAAATATTAATAAATTA
42282 ATTTAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAAATATTAATAAATTA
Found at i:42295 original size:18 final size:18
Alignment explanation
Indices: 42272--42306 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
42262 TTATAAATAT
42272 TATTAAATTAATTTAAAA
1 TATTAAATTAATTTAAAA
*
42290 TATTAAATTATTTTAAA
1 TATTAAATTAATTTAAA
42307 TAATTTACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAAATTAATTTAAAA
Found at i:42509 original size:21 final size:21
Alignment explanation
Indices: 42471--42510 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
42461 TTAAATTTGT
*
42471 TTAATAATCATAATTATTATG
1 TTAATAATAATAATTATTATG
42492 TTAATAATAATTAA-TATTA
1 TTAATAATAA-TAATTATTA
42511 ATATAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 14 0.82
22 3 0.18
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (21 bp):
TTAATAATAATAATTATTATG
Found at i:42522 original size:13 final size:15
Alignment explanation
Indices: 42480--42525 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
42470 TTTAATAATC
* *
42480 ATAATTATTATGTTA
1 ATAATAATTATATTA
42495 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
42511 AT-ATAATT-TATTA
1 ATAATAATTATATTA
42524 AT
1 AT
42526 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
13 7 0.25
15 14 0.50
16 7 0.25
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:42839 original size:30 final size:29
Alignment explanation
Indices: 42776--42844 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
42766 AACAAGTATA
*
42776 ATATAATTAATTAATTATAATTATTATTAT
1 ATATAA-TAATTAATTATAATTATAATTAT
*
42806 ATATAATAATTGATTATAAATTATAAATT-T
1 ATATAATAATTAATTAT-AATTAT-AATTAT
42836 ATATGAATA
1 ATAT-AATA
42845 GCTTAATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 10 0.29
30 17 0.50
31 7 0.21
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (29 bp):
ATATAATAATTAATTATAATTATAATTAT
Found at i:42896 original size:30 final size:30
Alignment explanation
Indices: 42862--42918 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
42852 AATTATAACT
* *
42862 TTAAGTTTAAAT-ATCATATCTAATATTTTA
1 TTAAGATTAAATAATAATAT-TAATATTTTA
*
42892 TTAAGATTATATAATAATATTAATATT
1 TTAAGATTAAATAATAATATTAATATT
42919 ATATAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
30 17 0.74
31 6 0.26
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (30 bp):
TTAAGATTAAATAATAATATTAATATTTTA
Found at i:42914 original size:19 final size:19
Alignment explanation
Indices: 42890--42928 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
42880 TCTAATATTT
42890 TATTAAGATTATATAATAA
1 TATTAAGATTATATAATAA
*
42909 TATTAATATTATATAATAA
1 TATTAAGATTATATAATAA
42928 T
1 T
42929 TATATAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (19 bp):
TATTAAGATTATATAATAA
Found at i:42930 original size:11 final size:11
Alignment explanation
Indices: 42897--42935 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
42887 TTTTATTAAG
42897 ATTATATAATA
1 ATTATATAATA
42908 A-TAT-TAAT-
1 ATTATATAATA
42916 ATTATATAATA
1 ATTATATAATA
42927 ATTATATAA
1 ATTATATAA
42936 ATTGATTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 1 0.04
9 7 0.28
10 7 0.28
11 10 0.40
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATTATATAATA
Found at i:42946 original size:16 final size:16
Alignment explanation
Indices: 42922--42960 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
42912 TAATATTATA
*
42922 TAATAATTATATAAAT
1 TAATTATTATATAAAT
*
42938 TGATTATTATATAAAT
1 TAATTATTATATAAAT
42954 TAATTAT
1 TAATTAT
42961 ATTATTAATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
TAATTATTATATAAAT
Found at i:44989 original size:25 final size:25
Alignment explanation
Indices: 44959--45039 Score: 83
Period size: 25 Copynumber: 3.2 Consensus size: 25
44949 ACTTGATCGG
44959 TAAAAATATTTATTTTTTAATATTA
1 TAAAAATATTTATTTTTTAATATTA
* *
44984 TAAAAATATTATAATTATT-ATATTA
1 TAAAAATATT-TATTTTTTAATATTA
* * *
45009 TAATAATATTAATTATTAGTAATATTA
1 TAAAAATATTTATT-TT-TTAATATTA
45036 TAAA
1 TAAA
45040 TATTAATATA
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
24 2 0.05
25 26 0.59
26 7 0.16
27 9 0.20
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
TAAAAATATTTATTTTTTAATATTA
Found at i:45031 original size:16 final size:16
Alignment explanation
Indices: 44990--45037 Score: 62
Period size: 16 Copynumber: 2.9 Consensus size: 16
44980 ATTATAAAAA
44990 TATTATAATTATTATAT
1 TATTATAA-TATTATAT
*
45007 TATAATAATATTA-AT
1 TATTATAATATTATAT
45022 TATTAGTAATATTATA
1 TATTA-TAATATTATA
45038 AATATTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 6 0.22
16 13 0.48
17 8 0.30
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
TATTATAATATTATAT
Found at i:45041 original size:25 final size:25
Alignment explanation
Indices: 44976--45047 Score: 85
Period size: 25 Copynumber: 2.8 Consensus size: 25
44966 ATTTATTTTT
44976 TAATATTATAAAAATATT-ATAATTA
1 TAATATTAT-AAAATATTAATAATTA
* *
45001 TTATATTATAATAATATTAATTATTA
1 TAATATTATAA-AATATTAATAATTA
45027 GTAATATTAT-AAATATTAATA
1 -TAATATTATAAAATATTAATA
45048 TAATAAATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
24 2 0.05
25 23 0.57
26 7 0.17
27 8 0.20
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.47
Consensus pattern (25 bp):
TAATATTATAAAATATTAATAATTA
Found at i:45043 original size:18 final size:18
Alignment explanation
Indices: 44987--45074 Score: 57
Period size: 18 Copynumber: 5.1 Consensus size: 18
44977 AATATTATAA
44987 AAATATTATAAT--TATT
1 AAATATTATAATAATATT
45003 --ATATTATAATAATATT
1 AAATATTATAATAATATT
* *
45019 AATTATTAGTAATATTA-T
1 AAATATTA-TAATAATATT
45037 AAATATTA-ATATAATAAATT
1 AAATATTATA-ATAAT--ATT
*
45057 AAATA--ATGATAATATT
1 AAATATTATAATAATATT
45073 AA
1 AA
45075 TTAGTAGTTT
Statistics
Matches: 57, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
14 10 0.18
16 10 0.18
17 4 0.07
18 19 0.33
19 8 0.14
20 6 0.11
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (18 bp):
AAATATTATAATAATATT
Found at i:46379 original size:18 final size:18
Alignment explanation
Indices: 46348--46382 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
46338 TACTAATTTG
*
46348 TATATAATAGAATTAATA
1 TATATAATACAATTAATA
*
46366 TATATAATTCAATTAAT
1 TATATAATACAATTAAT
46383 TATGAATAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (18 bp):
TATATAATACAATTAATA
Found at i:46495 original size:29 final size:30
Alignment explanation
Indices: 46463--46523 Score: 97
Period size: 29 Copynumber: 2.0 Consensus size: 30
46453 ATAATATTTA
46463 ATTAAATAAATACTTA-ATTTATTTAATAT
1 ATTAAATAAATACTTATATTTATTTAATAT
*
46492 ATTAAATAAATTCTTATTATTTATTTAATAT
1 ATTAAATAAATACTTA-TATTTATTTAATAT
46523 A
1 A
46524 ATAGAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 15 0.52
31 14 0.48
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (30 bp):
ATTAAATAAATACTTATATTTATTTAATAT
Found at i:46628 original size:22 final size:25
Alignment explanation
Indices: 46603--46654 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 25
46593 TTCAATTGTT
46603 TAATAAAATTAAT-AT-T-ATTATA
1 TAATAAAATTAATAATATAATTATA
*
46625 TAATTAAATTAATAATATAATTATA
1 TAATAAAATTAATAATATAATTATA
46650 TAATA
1 TAATA
46655 TTTAGTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 12 0.48
23 2 0.08
24 1 0.04
25 10 0.40
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATAAAATTAATAATATAATTATA
Found at i:46631 original size:17 final size:17
Alignment explanation
Indices: 46603--46647 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
46593 TTCAATTGTT
*
46603 TAATAAAATTAATATT-A
1 TAATATAATTAA-ATTAA
*
46620 TTATATAATTAAATTAA
1 TAATATAATTAAATTAA
46637 TAATATAATTA
1 TAATATAATTA
46648 TATAATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 3 0.12
17 21 0.88
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATATAATTAAATTAA
Found at i:46743 original size:21 final size:21
Alignment explanation
Indices: 46697--46759 Score: 81
Period size: 21 Copynumber: 2.9 Consensus size: 21
46687 TTTTAATATA
46697 TAATAATATTATATAATTATCC
1 TAATAATATTA-ATAATTATCC
* **
46719 TAATAATATTAATCATTATGT
1 TAATAATATTAATAATTATCC
46740 TAATAATATTAAGTAATTAT
1 TAATAATATTAA-TAATTAT
46760 TAATATTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 19 0.53
22 17 0.47
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (21 bp):
TAATAATATTAATAATTATCC
Found at i:46765 original size:17 final size:16
Alignment explanation
Indices: 46742--46787 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 16
46732 CATTATGTTA
46742 ATAATATTAAGTAATT
1 ATAATATTAAGTAATT
*
46758 ATTAATATTAATTAAATT
1 A-TAATATTAAGT-AATT
46776 ATAA-ATTAAGTA
1 ATAATATTAAGTA
46788 CTTTTAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 1 0.04
16 7 0.27
17 13 0.50
18 5 0.19
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (16 bp):
ATAATATTAAGTAATT
Found at i:46901 original size:20 final size:19
Alignment explanation
Indices: 46850--46913 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 19
46840 AAATATTAGT
*
46850 TATT-TAATAATTATCAAT
1 TATTATAATAATTATCAAA
46868 TA-TATGAATAAATTATCCAAA
1 TATTAT-AAT-AATTAT-CAAA
*
46889 TATTATAATAATTATAATAA
1 TATTATAATAATTATCA-AA
46909 TATTA
1 TATTA
46914 GTTATAAAAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 1 0.03
18 3 0.08
19 4 0.11
20 19 0.50
21 8 0.21
22 3 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (19 bp):
TATTATAATAATTATCAAA
Found at i:47490 original size:21 final size:21
Alignment explanation
Indices: 47426--47490 Score: 60
Period size: 24 Copynumber: 3.0 Consensus size: 21
47416 TGTTAAGAAT
47426 AATT-AATTATTATATCAATTA
1 AATTAAATTATTATAT-AATTA
** *
47447 TTTTAATAATTAATATAATAATTA
1 AATT-A-AATTATTAT-ATAATTA
47471 AATTAAATTATTATATAATT
1 AATTAAATTATTATATAATT
47491 TATTACTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
21 8 0.24
22 8 0.24
23 1 0.03
24 15 0.44
25 2 0.06
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
AATTAAATTATTATATAATTA
Found at i:47494 original size:46 final size:44
Alignment explanation
Indices: 47426--47542 Score: 113
Period size: 46 Copynumber: 2.7 Consensus size: 44
47416 TGTTAAGAAT
* *
47426 AATTAATTATTATATCAATTATT-TTAATAATTAATATAATAATTA
1 AATTAATTATTATATCAATTATTATT-ATAATT-ATAAAATAATAA
47471 AATTAAATTATTATAT-AATTTATTACTTATAATTATAAAATAATAA
1 AATT-AATTATTATATCAA-TTATTA-TTATAATTATAAAATAATAA
47517 AA-TAA-TA-TATA--AATTATATATTATAA
1 AATTAATTATTATATCAATTAT-TATTATAA
47543 GATTATAATA
Statistics
Matches: 65, Mismatches: 2, Indels: 15
0.79 0.02 0.18
Matches are distributed among these distances:
40 10 0.15
41 4 0.06
42 4 0.06
43 2 0.03
44 2 0.03
45 7 0.11
46 28 0.43
47 6 0.09
48 2 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (44 bp):
AATTAATTATTATATCAATTATTATTATAATTATAAAATAATAA
Found at i:47553 original size:16 final size:15
Alignment explanation
Indices: 47460--47554 Score: 62
Period size: 14 Copynumber: 6.6 Consensus size: 15
47450 TAATAATTAA
*
47460 TATAATAAT-TAAAT
1 TATAATATTATAAAT
47474 TA-AATTATTATATAAT
1 TATAA-TATTATA-AAT
*
47490 T-TATTACTTAT-AAT
1 TATAATA-TTATAAAT
* *
47504 TATAAAATAATAAA-
1 TATAATATTATAAAT
47518 -ATAATA-TATAAAT
1 TATAATATTATAAAT
47531 TAT-ATATTATAAGAT
1 TATAATATTATAA-AT
47546 TATAATATT
1 TATAATATT
47555 TATTTAAATA
Statistics
Matches: 62, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
12 5 0.08
13 10 0.16
14 19 0.31
15 14 0.23
16 14 0.23
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (15 bp):
TATAATATTATAAAT
Found at i:47590 original size:36 final size:36
Alignment explanation
Indices: 47550--47618 Score: 88
Period size: 36 Copynumber: 1.9 Consensus size: 36
47540 TAAGATTATA
* *
47550 ATATTTATTTA-AATAATAAATAATTATAA-ATAAGGT
1 ATATTAATTTATAA-AAT-AATAACTATAATATAAGGT
47586 ATATTAATTTATAAAATAATAACTATAATATAA
1 ATATTAATTTATAAAATAATAACTATAATATAA
47619 TTTTAAGTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
35 10 0.34
36 17 0.59
37 2 0.07
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (36 bp):
ATATTAATTTATAAAATAATAACTATAATATAAGGT
Found at i:48471 original size:21 final size:23
Alignment explanation
Indices: 48423--48481 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 23
48413 ATTAATAGAT
48423 ATAATAATAGTT-AATAAATTAA
1 ATAATAATAGTTAAATAAATTAA
*
48445 AT-ATAATAGTTAAAT-TA-TAA
1 ATAATAATAGTTAAATAAATTAA
48465 ATAATAATAAGTTAAAT
1 ATAATAAT-AGTTAAAT
48482 GTTTAATCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 5 0.15
21 15 0.45
22 13 0.39
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (23 bp):
ATAATAATAGTTAAATAAATTAA
Found at i:48479 original size:22 final size:20
Alignment explanation
Indices: 48442--48481 Score: 62
Period size: 22 Copynumber: 1.9 Consensus size: 20
48432 GTTAATAAAT
48442 TAAATATAATAGTTAAATTA
1 TAAATATAATAGTTAAATTA
48462 TAAATAATAATAAGTTAAAT
1 TAAAT-ATAAT-AGTTAAAT
48482 GTTTAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 5 0.28
21 5 0.28
22 8 0.44
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
TAAATATAATAGTTAAATTA
Found at i:48550 original size:13 final size:13
Alignment explanation
Indices: 48528--48552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
48518 ATATATATAT
48528 ATTAAATATTTAA
1 ATTAAATATTTAA
48541 ATTAAATATTTA
1 ATTAAATATTTA
48553 TTCTAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATATTTAA
Found at i:48597 original size:17 final size:18
Alignment explanation
Indices: 48575--48619 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
48565 AAATATTATA
*
48575 TAATTATATTATTAAT-T
1 TAATTATATTAGTAATAT
48592 TAATTATA-TAGTAATAT
1 TAATTATATTAGTAATAT
*
48609 TAATTTTATTA
1 TAATTATATTA
48620 AACAGTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 16 0.67
18 2 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
TAATTATATTAGTAATAT
Found at i:48813 original size:13 final size:13
Alignment explanation
Indices: 48797--48843 Score: 51
Period size: 12 Copynumber: 3.5 Consensus size: 13
48787 ATAATAAACA
48797 AATTTATTAAATT
1 AATTTATTAAATT
*
48810 AATTTA-TAAAAT
1 AATTTATTAAATT
*
48822 AATTAATATAAATT
1 AATTTAT-TAAATT
48836 AATATTAT
1 AAT-TTAT
48844 AATAATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
12 10 0.37
13 6 0.22
14 8 0.30
15 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTTATTAAATT
Found at i:48826 original size:21 final size:23
Alignment explanation
Indices: 48802--48873 Score: 57
Period size: 25 Copynumber: 3.3 Consensus size: 23
48792 AAACAAATTT
48802 ATTAAATTAATT-TA-TAAAATA
1 ATTAAATTAATTATATTAAAATA
* *
48823 ATTAATATAAATTAATATTATAATA
1 ATTAA-ATTAATT-ATATTAAAATA
48848 ATTATAATTAA-TAT-TT-AAAT-
1 ATTA-AATTAATTATATTAAAATA
48868 ATTAAA
1 ATTAAA
48874 GTATTTTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
19 2 0.05
20 4 0.10
21 8 0.19
22 8 0.19
23 2 0.05
24 3 0.07
25 14 0.33
26 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (23 bp):
ATTAAATTAATTATATTAAAATA
Found at i:48951 original size:14 final size:14
Alignment explanation
Indices: 48932--48962 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
48922 TATATTATGC
*
48932 TATAATAATAATAA
1 TATAATAATAACAA
48946 TATAATAATAACAA
1 TATAATAATAACAA
48960 TAT
1 TAT
48963 CTTATAATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (14 bp):
TATAATAATAACAA
Found at i:49330 original size:15 final size:15
Alignment explanation
Indices: 49287--49330 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
49277 CAATATTTAT
49287 AATTA-TAATTATTA
1 AATTATTAATTATTA
* * *
49301 TATTATCAATAATTA
1 AATTATTAATTATTA
49316 AATTATTAATTATTA
1 AATTATTAATTATTA
49331 CAAATTGTCA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
14 4 0.17
15 19 0.83
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
AATTATTAATTATTA
Found at i:49753 original size:20 final size:22
Alignment explanation
Indices: 49730--49770 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
49720 TGATTAACAT
49730 ATTAATTAT-A-AAATATTATA
1 ATTAATTATCATAAATATTATA
49750 ATTAATTATCATAAATATTAT
1 ATTAATTATCATAAATATTAT
49771 TAATATTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.47
21 1 0.05
22 9 0.47
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTAATTATCATAAATATTATA
Found at i:50240 original size:17 final size:18
Alignment explanation
Indices: 50210--50251 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
50200 TTTAATAAAT
*
50210 TATTGATTATAATTTATAA
1 TATTTATTATAATTT-TAA
50229 -ATTTATTA-AATTTTAA
1 TATTTATTATAATTTTAA
50245 TATTTAT
1 TATTTAT
50252 AATATTATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 3 0.14
17 11 0.52
18 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TATTTATTATAATTTTAA
Found at i:50316 original size:21 final size:19
Alignment explanation
Indices: 50290--50337 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 19
50280 AGTTTGAATT
50290 ATAAATTAATTAATTATTTAA
1 ATAAATTAATTAATTA-TT-A
*
50311 ATAAATT-A-TGATTATTA
1 ATAAATTAATTAATTATTA
50328 ATAAATTAAT
1 ATAAATTAAT
50338 AGTAATATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
17 8 0.33
18 3 0.12
19 5 0.21
20 1 0.04
21 7 0.29
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (19 bp):
ATAAATTAATTAATTATTA
Found at i:50730 original size:11 final size:10
Alignment explanation
Indices: 50677--50760 Score: 59
Period size: 10 Copynumber: 8.1 Consensus size: 10
50667 TTGTTAAACA
50677 AATAATTTTAT
1 AATAA-TTTAT
*
50688 AATTAAATATAT
1 AA-T-AATTTAT
50700 AAT-ATTTAAT
1 AATAATTT-AT
50710 AAATAA-TTAT
1 -AATAATTTAT
50720 AATTAATTTAT
1 AA-TAATTTAT
*
50731 AATAAGGTTAT
1 AATAA-TTTAT
50742 -A-AATTTAT
1 AATAATTTAT
50750 AATAATTTAT
1 AATAATTTAT
50760 A
1 A
50761 TAAATTAAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 21
0.70 0.05 0.25
Matches are distributed among these distances:
8 4 0.07
9 8 0.14
10 19 0.32
11 18 0.31
12 8 0.14
13 2 0.03
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (10 bp):
AATAATTTAT
Found at i:50764 original size:20 final size:19
Alignment explanation
Indices: 50678--50766 Score: 72
Period size: 20 Copynumber: 4.4 Consensus size: 19
50668 TGTTAAACAA
* *
50678 ATAATTTTATAATTAAATAT
1 ATAAATTTATAA-TAATTAT
50698 ATAATATTTAATAAATAATTAT
1 ATAA-ATTT-AT-AATAATTAT
* *
50720 AATTAATTTATAATAAGGT-T
1 -ATAAATTTATAATAA-TTAT
50740 ATAAATTTATAATAATTTAT
1 ATAAATTTATAATAA-TTAT
50760 ATAAATT
1 ATAAATT
50767 AAATATAATA
Statistics
Matches: 56, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
19 15 0.27
20 18 0.32
21 6 0.11
22 12 0.21
23 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (19 bp):
ATAAATTTATAATAATTAT
Found at i:51329 original size:15 final size:15
Alignment explanation
Indices: 51309--51356 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
51299 AATTATATAA
51309 ATAAATTTTAATTAT
1 ATAAATTTTAATTAT
*
51324 ATAAATATTAATTTAT
1 ATAAATTTTAA-TTAT
*
51340 ATTTAAATTTAAATTAT
1 A--TAAATTTTAATTAT
51357 CTAATATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
15 10 0.37
16 5 0.19
17 4 0.15
18 8 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAAATTTTAATTAT
Found at i:52036 original size:17 final size:18
Alignment explanation
Indices: 52014--52076 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 18
52004 CCATTTATGA
52014 AATATTAGA-TAATTAA-T
1 AATATTA-ATTAATTAATT
52031 AATATTAATTAATTAATT
1 AATATTAATTAATTAATT
* *
52049 AATATTTTATTAATTTTATT
1 AATA-TTAATTAA-TTAATT
52069 AAT-TTAAT
1 AATATTAAT
52077 ATTTTATCTT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
16 1 0.03
17 14 0.36
18 9 0.23
19 7 0.18
20 8 0.21
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
AATATTAATTAATTAATT
Found at i:52075 original size:25 final size:23
Alignment explanation
Indices: 52033--52083 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 23
52023 TAATTAATAA
52033 TATTAATTAATTAATTAATATTT
1 TATTAATTAATTAATTAATATTT
*
52056 TATTAATTTTATTAATTTAATATTT
1 TATTAA-TTAATTAA-TTAATATTT
52081 TAT
1 TAT
52084 CTTTGATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 6 0.24
24 7 0.28
25 12 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (23 bp):
TATTAATTAATTAATTAATATTT
Found at i:53088 original size:12 final size:12
Alignment explanation
Indices: 53073--53097 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53063 ATAATGTATT
53073 ATTATATTATAA
1 ATTATATTATAA
53085 ATTATATTATAA
1 ATTATATTATAA
53097 A
1 A
53098 AACTACATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATTATATTATAA
Found at i:53138 original size:15 final size:14
Alignment explanation
Indices: 53059--53145 Score: 65
Period size: 15 Copynumber: 6.4 Consensus size: 14
53049 TATAATCATT
*
53059 TTATATAATGTATTA
1 TTATATAAT-TATAA
*
53074 TTATATTA-TA-AA
1 TTATATAATTATAA
* * *
53086 TTATATTATAAAAA
1 TTATATAATTATAA
* *
53100 CTACATAA-TATAA
1 TTATATAATTATAA
53113 TTATA-AATTATAA
1 TTATATAATTATAA
53126 TTATGATAATTATAA
1 TTAT-ATAATTATAA
53141 TTATA
1 TTATA
53146 AGTTTTTGAC
Statistics
Matches: 57, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
12 11 0.19
13 18 0.32
14 9 0.16
15 19 0.33
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.46
Consensus pattern (14 bp):
TTATATAATTATAA
Found at i:53221 original size:26 final size:27
Alignment explanation
Indices: 53187--53237 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
53177 TTTATATATA
53187 ATTTAATTATATATAAAT-TATAATAGT
1 ATTTAATTATA-ATAAATGTATAATAGT
53214 ATTT-ATTATAATAAATGTATAATA
1 ATTTAATTATAATAAATGTATAATA
53238 ATTCATATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.26
26 13 0.57
27 4 0.17
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (27 bp):
ATTTAATTATAATAAATGTATAATAGT
Found at i:53323 original size:14 final size:14
Alignment explanation
Indices: 53276--53333 Score: 64
Period size: 14 Copynumber: 4.1 Consensus size: 14
53266 GAATGTTAAT
53276 AATTAAAA-ATTTTA
1 AATTAAAATA-TTTA
*
53290 AATTTTAAATATTTA
1 AA-TTAAAATATTTA
53305 AATTAAAATATTTA
1 AATTAAAATATTTA
* *
53319 AATTATATTATTTA
1 AATTAAAATATTTA
53333 A
1 A
53334 TTATCGATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
14 26 0.68
15 11 0.29
16 1 0.03
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTAAAATATTTA
Found at i:53481 original size:16 final size:15
Alignment explanation
Indices: 53452--53486 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
53442 ACTATTCACA
53452 TATACATTTAATTAT
1 TATACATTTAATTAT
*
53467 TATACTATTTGATTAT
1 TATAC-ATTTAATTAT
53483 TATA
1 TATA
53487 AAATTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (15 bp):
TATACATTTAATTAT
Found at i:53493 original size:27 final size:27
Alignment explanation
Indices: 53461--53523 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
53451 ATATACATTT
* *
53461 AATTATTATACT-ATTTGATTATTATAA
1 AATTATTA-ACTAATTTAATTATAATAA
*
53488 AATTATTAACTAATTTAATTGTAATAA
1 AATTATTAACTAATTTAATTATAATAA
*
53515 ATTTATTAA
1 AATTATTAA
53524 AATATACGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 3 0.10
27 28 0.90
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (27 bp):
AATTATTAACTAATTTAATTATAATAA
Found at i:53597 original size:23 final size:22
Alignment explanation
Indices: 53567--53633 Score: 70
Period size: 23 Copynumber: 3.1 Consensus size: 22
53557 ACACAATTTG
*
53567 TATT-ATTATAAATTAAT-ATT
1 TATTAATTATAAATAAATAATT
53587 ATACTTAATTATAAATAAATAATT
1 -TA-TTAATTATAAATAAATAATT
*
53611 TATTAATTAT-ATTAAAT-ATT
1 TATTAATTATAAATAAATAATT
53631 TAT
1 TAT
53634 AATGAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 6 0.15
21 8 0.20
22 10 0.24
23 14 0.34
24 3 0.07
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (22 bp):
TATTAATTATAAATAAATAATT
Found at i:55299 original size:17 final size:17
Alignment explanation
Indices: 55273--55311 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
55263 TCCATAGTGG
55273 TTAT-ATTATATATTTA
1 TTATAATTATATATTTA
55289 TTATAATTATATATTTA
1 TTATAATTATATATTTA
*
55306 TAATAA
1 TTATAA
55312 AATAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATAATTATATATTTA
Found at i:55465 original size:27 final size:26
Alignment explanation
Indices: 55434--55508 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
55424 AATACTTATA
*
55434 ATTTATTATTAATTATATGAATATTG
1 ATTTATTATTAATTATATAAATATTG
* * * *
55460 ATTT-TAATTTAAATATTTTAATTATTG
1 ATTTATTA-TTAATTA-TATAAATATTG
55487 ATTT-TTATTAATTA-ATAAATAT
1 ATTTATTATTAATTATATAAATAT
55509 CTAAAAAGAT
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
24 6 0.16
25 2 0.05
26 16 0.42
27 14 0.37
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (26 bp):
ATTTATTATTAATTATATAAATATTG
Found at i:56409 original size:181 final size:182
Alignment explanation
Indices: 55607--56595 Score: 804
Period size: 181 Copynumber: 5.4 Consensus size: 182
55597 AAAACAAAAG
* * ** * * * *
55607 GTCATAATTATTTGAACTGGTT-AGGTAAGCAAAATTATTTGTTAAA--TC-T-CTTATTAATTT
1 GTCATAACTATTTGAACTAGTTCAGACAAACAAATTTATTTTTTAAATCTCTTACTTATTAAATT
* * * *
55667 TTGAAATATTAATAAATTCA-TTTTATTTTATTCTAAATAAGCTAGTATGAATTGAAA-ACATTG
66 TTGAAATATTAATAAATT-AGTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACA-ATTG
*
55730 TTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCATATA
129 TTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATA
* * * *
55784 ATCTTAACTATTTAAACTAGTTCA-ACAAACAAATTTATTTTTTAAATCTCTTAGTTATT-AATT
1 GTCATAACTATTTGAACTAGTTCAGACAAACAAATTTATTTTTTAAATCTCTTACTTATTAAATT
* * * * * * * *
55847 TTTAGAGTATTATTAGATTAGTATTATTTTATTTCGAATAAGCTTATATGAACATG-AATAATTG
66 TTGA-AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAA-TTGAAACAATTG
* * * * * * *
55911 TTTTATGACAAAACAAAAAAAGTTTATTTTTTAAATAACTAATTTAAACTATACATTTGTTCAAA
129 TTTTATGACAAAAC---AAAAG--------GT-CATAA-TGATTTAAAATAGATAATTGTTCAAA
55976 TA
181 TA
* * * * *
55978 GTCATAACTATTTGAA-TGGGTTC-GATAAATAAATTTATTTTTTAAATTTCTTACTTATTAACT
1 GTCATAACTATTTGAACT-AGTTCAGACAAACAAATTTATTTTTTAAATCTCTTACTTATTAAAT
* * ** *
56041 TTTGAAAGATTAATAAATTAGTATTATTTTATTCT--A-AAGCTTGTATG-ATAAAAAATAATTG
65 TTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAAT-TGAAACAATTG
* * * * * * * *
56102 TTATATGACCAAACAAAAGTTAATATTGATTCAAAA-AGATAATTATTGAAATA
129 TTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATA
* * * ** * * *
56155 GCCATAATTATTTGAACTAATTC-GGTAAATATAA-TTATTTTTTAAATCACTTACTTATTAATT
1 GTCATAACTATTTGAACTAGTTCAGACAAACA-AATTTATTTTTTAAATCTCTTACTTATTAAAT
* *
56218 TTTAAAATATTAATAAATTACTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGT
65 TTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGT
* *
56283 TTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATA
130 TTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATA
* * * * *
56336 GTAATAACTATTTGAATTTGTTCAGA-AAACAAATTAATTATTTTAAA-CTCTTGCTTATTAAAT
1 GTCATAACTATTTGAACTAGTTCAGACAAACAAATTTATT-TTTTAAATCTCTTACTTATTAAAT
* * * * * *
56399 TTTGAAATATTAAGAAATTGGTATTATTTTATTTTGGATAAGCGTT-TATGAACTAAAACAATTA
65 TTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGC-TTGTATGAATTGAAACAATTG
* * ** *
56463 TTTTTTGTCAAAACAAAAGGTCATAACAATTTAAAATAAATAATTGTTCAAATA
129 TTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATA
* * ** * * * *
56517 GTCATAACTATTTGAACTTGAT--GGTAAACAAATTTATTTTTTCATATCTTTTGCTTATTAATT
1 GTCATAACTATTTGAACTAGTTCAGACAAACAAATTTATTTTTT-AAATCTCTTACTTATTAA-A
*
56580 TTTTG-AATGTTAATAA
64 TTTTGAAATATTAATAA
56596 TTAAAATTTT
Statistics
Matches: 648, Mismatches: 122, Indels: 80
0.76 0.14 0.09
Matches are distributed among these distances:
177 127 0.20
178 11 0.02
179 12 0.02
180 74 0.11
181 258 0.40
182 18 0.03
184 5 0.01
188 5 0.01
190 1 0.00
191 30 0.05
192 2 0.00
193 5 0.01
194 94 0.15
195 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (182 bp):
GTCATAACTATTTGAACTAGTTCAGACAAACAAATTTATTTTTTAAATCTCTTACTTATTAAATT
TTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTT
TTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCAAATA
Found at i:56800 original size:16 final size:15
Alignment explanation
Indices: 56770--56826 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
56760 ATTAAATAGA
*
56770 TAATAATAATTATTAT
1 TAAT-ATAAATATTAT
56786 TAATATAAATAATTAT
1 TAATATAAAT-ATTAT
**
56802 TAACTATTTATATTAT
1 TAA-TATAAATATTAT
56818 TAAATATAA
1 T-AATATAA
56827 TGTATAAGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 5 0.15
16 21 0.64
17 7 0.21
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (15 bp):
TAATATAAATATTAT
Found at i:56863 original size:16 final size:17
Alignment explanation
Indices: 56844--56877 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
56834 GATATTATTC
56844 AAATAATATTA-TTATA
1 AAATAATATTACTTATA
*
56860 AAATAGTATTACTTATA
1 AAATAATATTACTTATA
56877 A
1 A
56878 TTAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
AAATAATATTACTTATA
Found at i:57162 original size:27 final size:26
Alignment explanation
Indices: 57114--57172 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
57104 GAGATTTATA
*
57114 AATTTATATAATAAATTATTAACTATT
1 AATTTATATAATAAATAATTAA-TATT
*
57141 AATTTAT-TTATAATATAATTAATATT
1 AATTTATATAATAA-ATAATTAATATT
*
57167 ATTTTA
1 AATTTA
57173 GTAGATTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
AATTTATATAATAAATAATTAATATT
Found at i:57459 original size:179 final size:176
Alignment explanation
Indices: 57222--57771 Score: 574
Period size: 179 Copynumber: 3.1 Consensus size: 176
57212 AAACAATATC
* * *
57222 TATTTCAAATCATTATGAAACTTTTGTTTTGTCATAAAACAATTGTTTTTCATCATACAAGCTAT
1 TATTTCAAATCGTTAT-AACCTTTTGTTTTGTCATAAAACAATTGTTTTTCTTCATACAAGCTAT
*
57287 TCATAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGGAGCTTTAAAAAATA
65 TCA-AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAA-TAGGAGATTTAAAAAATA
57352 AATTTGTTTATCAAATCAGTTCAAATAGTTATGACTATTTGAATAATTATA
128 AATTTGTTTA-CAAA-CAGTTCAAATAGTTATGACTATTTGAATAATTATA
* *
57403 TATTTC-AATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTATCTTCATACAA-CTTAT
1 TATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTCTTCATACAAGC-TAT
* * * *
57466 TCAAAATAAAATAATACTAATCTAGTAATATTATG-AAATTTAATAACT-GATAGATTTAAAAAA
65 TC-AAATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAA-TAG-GAGATTTAAAAAA
* * * * * *
57529 TAAATTTGTTTACTGAACCAATTCAAACAGTTAAGACTATATGAATAATTATC
126 TAAATTTGTTTAC--AAACAGTTCAAATAGTTATGACTATTTGAATAATTATA
* ** * * * * *
57582 TATTTCAAATCGTTATGACCTTTTGTTTTGTTGTAAAACAAATGTTTTTGTTCATATAAGTTTGT
1 TATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTCTTCATACAAG-CT-A
* * * *
57647 TTGAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAA-AA-A-GAGATTTAATAAATAA
64 TTCAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAATAGGAGATTTAAAAAATAA
* * * * * * * * *
57709 ATCTATTTACCATACTAGTTCAATTAGTTATAACAATTTGAACATTTATT
129 ATTTGTTTA-CAAAC-AGTTCAAATAGTTATGACTATTTGAATAATTATA
57759 TATTTCAAATCGT
1 TATTTCAAATCGT
57772 GCTAAATTAA
Statistics
Matches: 306, Mismatches: 49, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
176 2 0.01
177 58 0.19
178 4 0.01
179 140 0.46
180 60 0.20
181 40 0.13
182 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (176 bp):
TATTTCAAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTCTTCATACAAGCTATT
CAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAATAGGAGATTTAAAAAATAAAT
TTGTTTACAAACAGTTCAAATAGTTATGACTATTTGAATAATTATA
Found at i:58789 original size:158 final size:159
Alignment explanation
Indices: 58590--58902 Score: 463
Period size: 158 Copynumber: 2.0 Consensus size: 159
58580 GGTTCATCAC
* * *
58590 AAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATAGTCA-AATTTATTTGAACAT
1 AAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAA-CTATTCGAACAT
*
58654 GTTCAAAAAACAAA-T-TTTTTTAAA-TTTTATCTTATTAAATTTTGAAATATTAATAAATTTAA
65 GTTCAAAAAACAAATTATTTTTTAAATTTTTAT-TTA-TAAATTTTGAAATATTAATAAATTAAA
*
58716 TTATTTTATTCGAAATAAGCTTGTATGGACAG
128 TTATTTTATTCGAAATAAGCCTGTATGGACAG
* *
58748 AAAACAAAAGGTCATAACTATTTGAAATAAATATTTGTTCAAATAGTCATAACTATTCGAACTTG
1 AAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTCGAACATG
* *
58813 TTCAAAAAACAAATTTATTTTTTAAATTTTTATTTATAAATTTTGGAATATTAATTAATTAAATT
66 TTCAAAAAACAAA-TTATTTTTTAAATTTTTATTTATAAATTTTGAAATATTAATAAATTAAATT
* *
58878 ATTTTATTTGAAGTAAGCCTGTATG
130 ATTTTATTCGAAATAAGCCTGTATG
58903 AATAGAAATA
Statistics
Matches: 139, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
158 70 0.50
159 2 0.01
160 49 0.35
161 12 0.09
162 6 0.04
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (159 bp):
AAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTCGAACATG
TTCAAAAAACAAATTATTTTTTAAATTTTTATTTATAAATTTTGAAATATTAATAAATTAAATTA
TTTTATTCGAAATAAGCCTGTATGGACAG
Found at i:59349 original size:181 final size:180
Alignment explanation
Indices: 58947--60002 Score: 845
Period size: 181 Copynumber: 5.9 Consensus size: 180
58937 ATAATATTCC
* * * * * * * * *
58947 TAAAACATTTAATTTTTGTTCA-ACAAGCTTATTCAGAGTAAAATATTGCTAAATTAATAATATT
1 TAAAACAATT-ATTTTAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * * *
59011 CTA-AACATTAATAAGTAAG-GATTTAAAAAATAAATGTGTTT-GCTGAATCAGTTCAAATAGTT
65 -TAGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATC-GAA-CAGTTCAAATAGTT
* * * * * * * * *
59073 AAGACTATTAGAACAATTATCTAGTTCAAATCGTTTTGACCTTTTGTTTAGTCA
127 ATGGCTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTATTTTGTCA
* ** * ** * * * *
59127 TAAAATAATTGCTTCAACTCATACATGCTTATTCGAAATAAAATAATACTAATTTATTAACATTT
1 TAAAACAATTATTTTAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
* * * * *
59192 AGAAAATTATTAAGTAAGA-AATTAGAAAAA-AAATCTATTTA-CTGGACAAGTTCAAATATTTT
66 AGAAAATTAATAAGTAAGAGATTTA-AAAAATAAATCTATTTATC-GAAC-AGTTCAAATAGTTA
* ** * *
59254 TGGACTATTTGAACAATTATTTATTTAAAATTGTTATGACCTTATATTTTATCA
128 TGG-CTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTATTTTGTCA
* *
59308 TAAAACAATTATTTTAGTTCATAAAAGCTTA-TCTAAAATAAAATAATATTACTTTATTAATATT
1 TAAAACAATTATTTTAGTTCATAAAAGCTTATTC-AAAATAAAATAATACTAATTTATTAATATT
* * * * *
59372 ATA-AAAATTGATAAGTTAGAGATTTAAAACATATATC-AGTTTATCGAATCAGTTCAAATAATT
65 -TAGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTA-TTTATCGAA-CAGTTCAAATAGTT
* * *
59435 ATGGC-ATTTAAATAATTATTTATTTCAAATCATTATGAACTTTTATTTTGTCA
127 ATGGCTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTATTTTGTCA
* * *
59488 TAAAACAATTGTTTT--TTCATCATACAAGCCTATTCAGAATAAAATAATACTAATTTATTAATA
1 TAAAACAATTATTTTAGTTCAT-A-A-AAGCTTATTCAAAATAAAATAATACTAATTTATTAATA
* * *
59551 TTT-GAAAAATTAATAAGTAGGAGATTTAAAAAATAAATTTGTTTATCGAATCAGTTCAAATAGT
63 TTTAG-AAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGAA-CAGTTCAAATAGT
* * * * *
59615 TATGACTATTTGAACAATTATATATTTCCAATC-----GACCATTTGTTTTGTCA
126 TATGGCTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTATTTTGTCA
* * * * *
59665 TAAAATAATTA-TTTATCTTCATACAAGCTTATTCAAAATAAAATAATACTAATCTAGTAATA-T
1 TAAAACAATTATTTTA-GTTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * * * * *
59728 TATGAAATTTAATAATTGATAGATTTAAAAAATAAATTTATTTA-CTGAACCAATTCAAATAGTT
65 TA-GAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATC-GAA-CAGTTCAAATAGTT
* * * * * * *
59792 AAGGCTATATGAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCG
127 ATGGCTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTATTTTGTCA
* * * * * * *
59846 TAAAACAAATATTTTTGTTCATATAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTT
1 TAAAACAATTATTTTAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
* * *
59911 CA-AAAA-T--TAA-TAAGAGATTTAATAAATAAATCTATTTA-CCATACTAGTTCAATTAGTTA
66 -AGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGA-AC-AGTTCAAATAGTTA
** * *
59970 TAACAATTTGAACATTTATTTATTTCAAATCAT
128 TGGCTATTTGAACAATTATTTATTTCAAATCAT
60003 ACTAAATTAA
Statistics
Matches: 700, Mismatches: 138, Indels: 79
0.76 0.15 0.09
Matches are distributed among these distances:
175 3 0.00
176 115 0.16
177 87 0.12
178 9 0.01
179 14 0.02
180 143 0.20
181 266 0.38
182 60 0.09
183 3 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
TAAAACAATTATTTTAGTTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
AGAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTATCGAACAGTTCAAATAGTTATGG
CTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTATTTTGTCA
Found at i:59464 original size:17 final size:18
Alignment explanation
Indices: 59424--59471 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 18
59414 ATCGAATCAG
59424 TTCAAATAATTATGGCAT
1 TTCAAATAATTATGGCAT
**
59442 TT-AAATAATTAT-TTAT
1 TTCAAATAATTATGGCAT
*
59458 TTCAAATCATTATG
1 TTCAAATAATTATG
59472 AACTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 4 0.16
17 19 0.76
18 2 0.08
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (18 bp):
TTCAAATAATTATGGCAT
Found at i:59888 original size:357 final size:353
Alignment explanation
Indices: 59004--60000 Score: 977
Period size: 357 Copynumber: 2.8 Consensus size: 353
58994 GCTAAATTAA
* * * * * *
59004 TAATATTCTAAACATTAATAAGTAAG-GATTTAAAAAATAAATGTGTTTGCTGAATCAGTTCAAA
1 TAATATTATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTATTTACTGAATCAGTTCAAA
* * * * * * * *
59068 TAGTTAAGACTATTAGAACAATTATCTAGTTCAAATCGTTTTGACCTTTTGTTTAGTCATAAAAT
66 TAGTTAAGGCTATT-GAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAAC
**** * *
59133 AATTGCTTCAACTCATACATGCTTATTCGAAATAAAATAATACTAATTTATTAACATTTAGAAAA
130 AATTG-TTTTTTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTA-AAAA
* * * * *
59198 TTATTAAGTA-AGAAATTAGAAAAA-AAATCTATTTACTGGA-CAAGTTCAAATATTTTTGGACT
193 TTAATAAGTAGAG-ATTTA-AAAAATAAATCTATTTAC-GAATCAAGTTCAAATAGTTAT-GACT
* * *
59260 ATTTGAACAATTATTTATTTAAAATTGTTATGACCTTATATTTTATCATAAAACAATTATTTTAG
254 ATTTGAACAATTATTTATTTCAAA----T-CGACCTTATATTTTATCATAAAACAATTATTTTAC
* * * *
59325 TTCATAAAAGCTTATCTAAAATAAAATAATATTACTTTAT
314 TTCATAAAAGCTTATCTAAAATAAAATAATACTAATCTAG
* * * *
59365 TAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATATA-TCAGTTTA-TCGAATCAGTTCA
1 TAATATTATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTA-TTTACT-GAATCAGTTCA
* * * * *
59428 AATAATTATGGC-ATTTAAATAATTATTTATTTCAAATCATTATGA-ACTTTTATTTTGTCATAA
64 AATAGTTAAGGCTA-TTGAATAATTATCTATTTCAAATCATTATGACA-TTTTGTTTTGTCATAA
*
59491 AACAATTGTTTTTTCATCATACAAGCCTATTC-AGAATAAAATAATACTAATTTATTAATATTTG
127 AACAATTGTTTTTT--TCATACAAGCTTATTCGA-AATAAAATAATACTAATTTATTAATATTT-
* *
59555 AAAAATTAATAAGTAGGAGATTTAAAAAATAAATTTGTTTATCGAATC-AGTTCAAATAGTTATG
188 AAAAATTAATAAGTA-GAGATTTAAAAAATAAATCTATTTA-CGAATCAAGTTCAAATAGTTATG
* * * * *
59619 ACTATTTGAACAATTATATATTTCCAATCGACCATT-TGTTTTGTCATAAAATAATTA-TTTATC
251 ACTATTTGAACAATTATTTATTTCAAATCGACC-TTATATTTTATCATAAAACAATTATTTTA-C
*
59682 TTCATACAAGCTTAT-TCAAAATAAAATAATACTAATCTAG
314 TTCATAAAAGCTTATCT-AAAATAAAATAATACTAATCTAG
* * * * *
59722 TAATATTATGAAATTTAATAA-TTGATAGATTTAAAAAATAAATTTATTTACTGAACCAATTCAA
1 TAATATTATAAAAATTAATAAGTT-AGAGATTTAAAAAATAAATTTATTTACTGAATCAGTTCAA
*
59786 ATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCGTAAAA
65 ATAGTTAAGGCTAT-TGAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAA
* * * * * *
59851 CAAATATTTTTGTTCATATAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATTTCAAAA
129 CAATTGTTTTT-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTT-AAAA
* * * * * *
59916 ATTAAT-A--AGAGATTTAATAAATAAATCTATTTAC-CATACTAGTTCAATTAGTTATAACAAT
192 ATTAATAAGTAGAGATTTAAAAAATAAATCTATTTACGAAT-CAAGTTCAAATAGTTATGACTAT
*
59977 TTGAACATTTATTTATTTCAAATC
256 TTGAACAATTATTTATTTCAAATC
60001 ATACTAAATT
Statistics
Matches: 526, Mismatches: 83, Indels: 62
0.78 0.12 0.09
Matches are distributed among these distances:
351 2 0.00
352 2 0.00
353 61 0.12
354 1 0.00
356 8 0.02
357 162 0.31
358 61 0.12
359 2 0.00
360 2 0.00
361 69 0.13
362 123 0.23
363 29 0.06
364 4 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (353 bp):
TAATATTATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTATTTACTGAATCAGTTCAAA
TAGTTAAGGCTATTGAATAATTATCTATTTCAAATCATTATGACATTTTGTTTTGTCATAAAACA
ATTGTTTTTTTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTAAAAATTA
ATAAGTAGAGATTTAAAAAATAAATCTATTTACGAATCAAGTTCAAATAGTTATGACTATTTGAA
CAATTATTTATTTCAAATCGACCTTATATTTTATCATAAAACAATTATTTTACTTCATAAAAGCT
TATCTAAAATAAAATAATACTAATCTAG
Found at i:60255 original size:10 final size:10
Alignment explanation
Indices: 60222--60285 Score: 51
Period size: 10 Copynumber: 6.2 Consensus size: 10
60212 AGATTTTTAC
60222 TAATTATTAT
1 TAATTATTAT
* *
60232 AGTACTTATAAT
1 --TAATTATTAT
60244 TAATTATTAT
1 TAATTATTAT
60254 TAA-TATTACT
1 TAATTATTA-T
*
60264 TAATTATATAG
1 TAATTAT-TAT
60275 T-ATTATTAT
1 TAATTATTAT
60284 TA
1 TA
60286 TATGTATCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 10
0.72 0.10 0.17
Matches are distributed among these distances:
9 8 0.19
10 20 0.48
11 4 0.10
12 10 0.24
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.53
Consensus pattern (10 bp):
TAATTATTAT
Found at i:60546 original size:18 final size:19
Alignment explanation
Indices: 60519--60566 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
60509 TATATAATTA
*
60519 AAATTTTAATT-ATTAGAT
1 AAATTATAATTGATTAGAT
* *
60537 AAATTATAATTGTTTATAT
1 AAATTATAATTGATTAGAT
*
60556 AATTTATAATT
1 AAATTATAATT
60567 TGCTTATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (19 bp):
AAATTATAATTGATTAGAT
Found at i:60575 original size:20 final size:19
Alignment explanation
Indices: 60535--60578 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
60525 TAATTATTAG
* *
60535 ATAAATTATAATTGTTTAT
1 ATAATTTATAATTGCTTAT
60554 ATAATTTATAATTTGCTTAT
1 ATAATTTATAA-TTGCTTAT
60574 ATAAT
1 ATAAT
60579 AGAATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (19 bp):
ATAATTTATAATTGCTTAT
Found at i:60709 original size:25 final size:26
Alignment explanation
Indices: 60679--60740 Score: 92
Period size: 25 Copynumber: 2.4 Consensus size: 26
60669 TAGTTTATTT
60679 AATATTAATAATTATTTCAATA-A-AA
1 AATATTAATAATTATTT-AATATACAA
60704 AATATTAATAATTATTTAATATACAA
1 AATATTAATAATTATTTAATATACAA
*
60730 ATTATTAATAA
1 AATATTAATAA
60741 CAATTGTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 4 0.12
25 18 0.53
26 12 0.35
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (26 bp):
AATATTAATAATTATTTAATATACAA
Found at i:60936 original size:17 final size:18
Alignment explanation
Indices: 60914--60954 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
60904 TTAATTAAAC
*
60914 TAATATTATTTAT-TTAT
1 TAATATTATTAATCTTAT
60931 TAATATTATTAATCCTTAT
1 TAATATTATTAAT-CTTAT
60950 TAATA
1 TAATA
60955 ATGATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
19 9 0.43
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATATTATTAATCTTAT
Found at i:61001 original size:16 final size:17
Alignment explanation
Indices: 60980--61011 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
60970 TAATCAATTG
60980 TTATATATAT-ACATAA
1 TTATATATATAACATAA
60996 TTATATATATAACATA
1 TTATATATATAACATA
61012 TGCTTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (17 bp):
TTATATATATAACATAA
Found at i:61374 original size:19 final size:18
Alignment explanation
Indices: 61350--61387 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
61340 GCCTTCTCAA
61350 TTAAA-TATTTATATTATAT
1 TTAAATTATTT-TA-TATAT
61369 TTAAATTATTTTATATAT
1 TTAAATTATTTTATATAT
61387 T
1 T
61388 AATTAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.33
19 7 0.39
20 5 0.28
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTAAATTATTTTATATAT
Found at i:61888 original size:26 final size:24
Alignment explanation
Indices: 61841--61889 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 24
61831 TTTATTAAAT
61841 TAATTTAATAAAATTTATAAATAC
1 TAATTTAATAAAATTTATAAATAC
61865 TAATTTAACATAAATATTTA-AAATA
1 TAATTT-A-ATAAA-ATTTATAAATA
61890 GAATAATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 6 0.27
25 1 0.05
26 10 0.45
27 5 0.23
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.41
Consensus pattern (24 bp):
TAATTTAATAAAATTTATAAATAC
Found at i:62798 original size:177 final size:177
Alignment explanation
Indices: 62135--62871 Score: 563
Period size: 180 Copynumber: 4.1 Consensus size: 177
62125 AAAATTAACA
* * * * * * *
62135 ATTTCAAAAATTAATAAGTAAGAGTTTAAAAAATGAATCTATTTACCGAACCAGTTTAAATAGTT
1 ATTTCAAAAATTAATAAGT-AGA-TTTAAAAAATAAATCTATGTACCAAACCAATTCAAAAAATT
* * * * * * * * *
62200 ATGACTATTTGAAGAATTCTATACTTCATATCATTATAACTTTTTGTTTTGTCATAAAACAATTA
64 AT-ACTATTTGAACAATTATATATTTCAAATCATTATGACTTTTTATTCTGTCATAAAACAAATG
* *** * * *
62265 TTTCTGTTCATACAAGCTTATTCAAAATAAAACAATACAAATCTAATAAT
128 TTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATCTATTAAT
* * * * ** * * * *
62315 A-TTCAAAAAATTAATAACTAAGGGATTTAAAAAATAAATTTGTTTGTCGAACCAATTTAAATAG
1 ATTTC-AAAAATTAATAAGT-A--GATTTAAAAAATAAATCTATGTACCAAACCAATTCAAAAAA
* * * * * * *
62379 TTAAGATTATATGAACAATTATCTAATTCAAAT-AGTTATGAC-CTTT-GTCTTGTCATAAAAC-
62 TT-ATACTATTTGAACAATTATATATTTCAAATCA-TTATGACTTTTTATTC-TGTCATAAAACA
* * * * * *
62440 AAT-TTTCTCAATTCATACTAGCTTATTCGAAATAAAATAA-AATGAATTTCTTAAT
124 AATGTTTCT--ATTCATACAAGCTTATTTGGAATAAAATAATACT-AATCTATTAAT
* * * * *
62495 ATTTCAAAAATTAATAAATAAAAGATTTAAAAAATAATTCTGTTTACCTAACCAATTCAAAAAAT
1 ATTTCAAAAATTAATAAGT---AGATTTAAAAAATAAATCTATGTACCAAACCAATTCAAAAAAT
* * *
62560 TATACTATTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATAAAACAAATG
63 TATACTATTTGAACAATTATATATTTCAAATCATTATGACTTTTTATTCTGTCATAAAACAAATG
* * * * * *
62625 TTTTTGTTCATATAAGTTTATTTGGAATAAAGTACTACTAATCTATTAAT
128 TTTCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATCTATTAAT
* ** * *
62675 ATTTCAAAAATTAATAAGT-GATTTAAAAAATAAATCTATGTATCAAATTAGTTCAAAAAGTTAT
1 ATTTCAAAAATTAATAAGTAGATTTAAAAAATAAATCTATGTACCAAACCAATTCAAAAAATTAT
** * * * *
62739 GACTATTTGAGTAATTATTTATTTCAAATCGTTATGACTTTTTATTCTGTTATAAAACAATTGTT
66 -ACTATTTGAACAATTATATATTTCAAATCATTATGACTTTTTATTCTGTCATAAAACAAATGTT
* * * *
62804 TCTATTTATACAAGCTTATTTGGATTAAAATAATACTAATTTGTTAAT
130 TCTATTCATACAAGCTTATTTGGAATAAAATAATACTAATCTATTAAT
** *
62852 ATTTTGACAATTAATAAGTA
1 ATTTCAAAAATTAATAAGTA
62872 AAAAATTTTA
Statistics
Matches: 446, Mismatches: 91, Indels: 42
0.77 0.16 0.07
Matches are distributed among these distances:
176 36 0.08
177 109 0.24
178 5 0.01
179 38 0.09
180 178 0.40
181 71 0.16
182 9 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (177 bp):
ATTTCAAAAATTAATAAGTAGATTTAAAAAATAAATCTATGTACCAAACCAATTCAAAAAATTAT
ACTATTTGAACAATTATATATTTCAAATCATTATGACTTTTTATTCTGTCATAAAACAAATGTTT
CTATTCATACAAGCTTATTTGGAATAAAATAATACTAATCTATTAAT
Found at i:63340 original size:22 final size:21
Alignment explanation
Indices: 63310--63352 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
63300 ATTATAATTT
*
63310 ATAAGAAATTATTTACTTATTA
1 ATAAGAAATTA-TTAATTATTA
*
63332 ATAATAAATTATTAATTATTA
1 ATAAGAAATTATTAATTATTA
63353 TTAGTTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
ATAAGAAATTATTAATTATTA
Found at i:63343 original size:14 final size:14
Alignment explanation
Indices: 63326--63367 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
63316 AATTATTTAC
63326 TTATTAATAATAAA
1 TTATTAATAATAAA
* *
63340 TTATTAATTAT-TA
1 TTATTAATAATAAA
63353 TTAGTTAATAATAAA
1 TTA-TTAATAATAAA
63368 GATAAAATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 4 0.18
14 17 0.77
15 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (14 bp):
TTATTAATAATAAA
Found at i:63376 original size:28 final size:29
Alignment explanation
Indices: 63315--63377 Score: 69
Period size: 28 Copynumber: 2.2 Consensus size: 29
63305 AATTTATAAG
*
63315 AAATTATTTACTTATTAATAATAAATTAT
1 AAATTATTTACTTATTAATAATAAAATAT
*
63344 TAATTA-TTA-TTAGTTAATAATAAAGATA-
1 AAATTATTTACTTA-TTAATAATAAA-ATAT
63372 AAATTA
1 AAATTA
63378 CAATTATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
27 3 0.10
28 19 0.66
29 7 0.24
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATTATTTACTTATTAATAATAAAATAT
Found at i:63986 original size:180 final size:180
Alignment explanation
Indices: 63640--65647 Score: 1571
Period size: 181 Copynumber: 11.2 Consensus size: 180
63630 ATATGTACAA
* * *
63640 AAACATTTGTTTTATGACAAAATAAAAGAACATAACGATTTGAAATAGATAATTGTTCAAATAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
* * * * * * * * *
63705 CATAATTATTTAAACTAGTT-AGGCAAACTGAATTT-GTTTTTAAATCTCTTGCTCATTAAGTTT
66 CATAACTATTTGAACTTGTTCA-GTAAAC-AAATTTATTTTTTAAATCTCTTACTTATTAATTTT
* * * * * * *
63768 T-GAAATAGTAATAAATTTGTTTTACTTTATTCCGAATAAGTTACTAAGAAATG
129 TAG-AATATTAATAAATTAGTATTATTTTATTTCGAATAAGTT-GTATGAAATG
* * * * * * * *
63821 AAAAAATTGTTTTACGACAAAA-AAAAGATCATAATGATTTAAAATAAAGAATTGTTCATATAGC
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
* * * * * *
63885 CTTAAATATTTGAACTAGTTCAGTAGATAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTTA
66 CATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTA
* * * *
63950 GAATATTATTATATTAGTATTATTTTATTTCGAATAAACTTGTGTG-AATAG
131 GAATATTAATAAATTAGTATTATTTTATTTCGAAT-AAGTTGTATGAAAT-G
* * * * * * *
64001 AAATAATTGTTTTATGAGATAACAAAAGGTTATAACAATTTGAAATATATAATTGTTCAAATAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
* * * *
64066 CATAACTATTTAAACTGGTTCAGTAAACAAATTAACTTTTTAAA--TCTT--TTATTAATTTTT-
66 CATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTA
* * * *
64126 GAAATATTAGTAAATTAGTATTATTTTATTCCAAATAGGCTTGTATG--ATG
131 G-AATATTAATAAATTAGTATTATTTTATTTCGAATAAG-TTGTATGAAATG
* * * *
64176 AAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATG
1 --AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATA
* * * ** * ** *
64241 GCCATAATTATTTGAA-TAAT-TTGA-TAAACTGATTTATTTTTTAAAACTCCAACTTCTTAATT
64 GTCATAACTATTTGAACT--TGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATT
** * * * * * * *
64303 TTT-GAAATATTAATAAAGCAATATTATTTTATTTTGGAAAAACTTTTATGTACTG
127 TTTAG-AATATTAATAAATTAGTATTATTTTA-TTTCGAATAAGTTGTATGAAATG
* * * * * *
64358 AAACAATTGTTTTATGATAAAATAAAAGGTCATAACGATTTTAAATAGATAATTATTCAAATCGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
* * * * *
64423 CATAACTATTTGAACTTATTCGGTAAATAGA--T-TTTTTTCAAT-T-TT-CTTATTAATTTTCT
66 CATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTT-T
* * * ** *
64482 AAAAT-TTAATAAATTAGTATTACTATATTTCGAATAAACATGTATGAATTG
130 AGAATATTAATAAATTAGTATTATTTTATTTCGAAT-AAGTTGTATGAAATG
* * * * ** * *
64533 AAACAATTATTTTTTTGACTAAACAAAAGATCAAAATAATTTGGAATAGATAATTGTTCTAATAG
1 AAACAATT-GTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAG
* * * *
64598 TCTTAACTATTTAAAC-TGCTTC-GAAAAACACATTTA-TTTTTAAA--TC---CTTATTAATTT
65 TCATAACTATTTGAACTTG-TTCAG-TAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTT
* * * *
64655 TT-GAAATAGTAATAAATTGGTATTATTTTATTTTGAATAATTTTGTATG-AATAG
128 TTAG-AATATTAATAAATTAGTATTATTTTATTTCGAATAA-GTTGTATGAAAT-G
* * * * * * * ** *
64709 AAACAATTATTTTATAATAAAATAAAATG-TCATAACAATTGGAAATAAATAACAGTTCAAATGG
1 AAACAATTGTTTTATGACAAAACAAAA-GATCATAACGATTTGAAATAGATAATTGTTCAAATAG
* * * * * *
64773 ACATGACTATTTAAACTTGTTCAGTAAACAGATTTATTTTTTAAATTTCTAACTTATTAATTTTT
65 TCATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTT
* * * *
64838 AGAATAATAATAAATTAGTATTATTTTATTCCAAATAAACTTGTATG-AATAG
130 AGAATATTAATAAATTAGTATTATTTTATTTCGAAT-AAGTTGTATGAAAT-G
* * *
64890 AAACAATTGTTTTATGACAAAACAAAAAATCATAAAGATTTGAAATATATAATTGTTCAAATAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
* * * * *
64955 AATAACTATTTGAACTTGCTC-GATAAATAAATTTATTATTTAAATCTTTTACTTATTAA-TTTT
66 CATAACTATTTGAACTTGTTCAG-TAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTT
*
65018 AGAAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTAT-AAATAG
130 AG-AATATTAATAAATTAGTATTATTTTATTTCGAATAAG-TTGTATGAAAT-G
* * * *
65071 AAATAATTGGTTTATGACAAAACAAATTG-TCATAACGATTTGAAATAAATAATTGTTCAAATAG
1 AAACAATTGTTTTATGACAAAACAAA-AGATCATAACGATTTGAAATAGATAATTGTTCAAATAG
** * * *
65135 TCATAACTA-TTGAA-TGTGTTCAAAAAACATATTTATTTTTTAAATAT-TTATTTATTAATTTT
65 TCATAACTATTTGAACT-TGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTT
* * * *
65197 TGGAGTTTTAATAAATTTA-TATTATTTTA-TTCGAAATAAGCTTGCATGAACA-G
129 TAGAATATTAATAAA-TTAGTATTATTTTATTTCG-AATAAG-TTGTATGAA-ATG
* * * * * * *
65250 -AACTAATTATTTTATGACAAAACAAATGGTCATAATGTTTTGAAATAGATAATTATTTAAATAG
1 AAAC-AATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAG
** * * * * *
65314 TCATAACTATTTGAACTTGTTTGGTAAACAGATTCATTTTTTTAATTCTCTTACTCATTAAGTTT
65 TCATAACTATTTGAACTTGTTCAGTAAACAAATTTA-TTTTTTAAATCTCTTACTTATTAATTTT
* * * * * *
65379 TGGTATATTAATAAATTAG-AGCTATTTTATTTCAAATAAGCT-TATGTTAATTG
129 TAGAATATTAATAAATTAGTA-TTATTTTATTTCGAATAAGTTGTATG--AAATG
* * * * * ** *
65432 AAACAATTATTTTATTACAAAATAAAAGGTCACAATTATTTGAAATAGATAATTATTCAAATAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
* ** * * *
65497 CTTAACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCT-TTCACTTATTAATTGTC
66 CATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCTT-ACTTATTAATTTTT
* * * *
65561 AAAATATTAATAAATTAATATTATTTTAATTCAAATAAGCTTGTATG-AATAG
130 AGAATATTAATAAATTAGTATTATTTTATTTCGAATAAG-TTGTATGAAAT-G
*
65613 AAACAATTGTTTTATTACAAAACAAAA-AGTCATAA
1 AAACAATTGTTTTATGACAAAACAAAAGA-TCATAA
65648 TAATTTTGTT
Statistics
Matches: 1467, Mismatches: 281, Indels: 158
0.77 0.15 0.08
Matches are distributed among these distances:
174 6 0.00
175 123 0.08
176 154 0.10
177 119 0.08
178 28 0.02
179 117 0.08
180 313 0.21
181 464 0.32
182 133 0.09
183 10 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (180 bp):
AAACAATTGTTTTATGACAAAACAAAAGATCATAACGATTTGAAATAGATAATTGTTCAAATAGT
CATAACTATTTGAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTCTTACTTATTAATTTTTA
GAATATTAATAAATTAGTATTATTTTATTTCGAATAAGTTGTATGAAATG
Found at i:64330 original size:357 final size:359
Alignment explanation
Indices: 63571--65653 Score: 1797
Period size: 361 Copynumber: 5.8 Consensus size: 359
63561 ATTGTTATAA
* ** *** * * * *
63571 CTTACTTCTTAATTTTCAAAATATTAATAAATTAATACCGTTTTATTCCGAACAAACTTATATGT
1 CTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAATAAACTTGTATGA
* * * **
63636 ACAAAAACATTTGTTTTATGACAAAATAAAAGAACATAACGATTTGAAATAGATAATTGTTCAAA
66 ATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAA
* * * * * *
63701 TAGTCATAATTATTTAAACTAGTT-AGGCAAACTGAATTT-GTTTTTAAATCTCTTGCTCATTAA
131 TAGTCATAACTATTTAAACTTGTTCA-GTAAAC-AAATTTATTTTTTAAATCTATT--T-ATTAA
* * * * * * * * *
63764 GTTTTGAAATAGTAATAAATTTGTTTTACTTTATTCCGAATAAG-TTACTAAGAAATGAAAA-AA
191 TTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTT-GTATG-AATAAAAACAA
* * * * * * * *
63827 TTGTTTTACGACAAAA-AAAAGATCATAATGATTTAAAATAAAGAATTGTTCATATAGCCTTAAA
254 TTGTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAAC
* * *
63891 TATTTGAAC-TAGTTCAGTAGA-TAAATTTATTTTTTAAATCT
319 TATTTGAACTTATTTGA-TAAACT-AATTTATTTTTTAAATCT
* * * * *
63932 CTTAGTTATTAATTTTT-AGAATATTATTATATTAGTATTATTTTATTTCGAATAAACTTGTGTG
1 CTTACTTATTAATTTTTGA-AATATTAATAAATTAATATTATTTTATTTCGAATAAACTTGTATG
* * * * * * *
63996 AATAGAAATAATTGTTTTATGAGATAACAAAAGGTTATAACAATTTGAAATATATAATTGTTCAA
65 AATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAA
* * *
64061 ATAGTCATAACTATTTAAACTGGTTCAGTAAACAAATTAACTTTTTAAATCT-TTTATTAATTTT
130 ATAGTCATAACTATTTAAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTATTTATTAATTTT
* *
64125 TGAAATATTAGTAAATTAGTATTATTTTATTCCAAATAGGCTTGTATG-ATGAAAAACAATTGTT
195 TGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAAT-AAAAACAATTGTT
* * * * *
64189 TTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATGGCCATAATTATTT
259 TTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTT
* * *
64254 GAA-TAATTTGATAAACTGATTTATTTTTTAAAACT
324 GAACTTATTTGATAAACTAATTTATTTTTTAAATCT
** * ** * *
64289 CCAACTTCTTAATTTTTGAAATATTAATAAAGCAATATTATTTTATTTTGGAA-AAACTTTTATG
1 CTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTA-TTTCGAATAAACTTGTATG
* * * *
64353 TACT-GAAACAATTGTTTTATGATAAAATAAAAGGTCATAACGATTTTAAATAGATAATTATTCA
65 -AATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCA
* * * * * * * *
64417 AATCGTCATAACTATTTGAACTTATTCGGTAAATAGA--T-TTTTTTCAAT-TTTCTTATTAATT
129 AATAGTCATAACTATTTAAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTAT-TTATTAATT
* * * * * * * **
64478 TTCTAAAAT-TTAATAAATTAGTATTACTATATTTCGAATAAACATGTATGAATTGAAACAATTA
193 TT-TGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATAAAAACAATT-
* * * * * * * *
64542 TTTTTTTGACTAAACAAAAGATCAAAATAATTTGGAATAGATAATTGTTCTAATAGTCTTAACTA
256 GTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTA
* ** * *
64607 TTTAAACTGCTTCGAAAAAC-ACATTTA-TTTTTAAA--T
321 TTTGAACTTATTTGATAAACTA-ATTTATTTTTTAAATCT
* ** * **
64643 C---CTTATTAATTTTTGAAATAGTAATAAATTGGTATTATTTTATTTTGAATAATTTTGTATGA
1 CTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAATAAACTTGTATGA
* * * * * * * **
64705 ATAGAAACAATTATTTTATAATAAAATAAAATGTCATAACAATTGGAAATAAATAACAGTTCAAA
66 ATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAA
* * * * *
64770 TGGACATGACTATTTAAACTTGTTCAGTAAACAGATTTATTTTTTAAATTTCTAACTTATTAATT
131 TAGTCATAACTATTTAAACTTGTTCAGTAAACAAATTTATTTTTTAAA--TCT-ATTTATTAATT
* * *
64835 TTT-AGAATAATAATAAATTAGTATTATTTTATTCCAAATAAACTTGTATGAATAGAAACAATTG
193 TTTGA-AATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATAAAAACAATTG
* * * *
64899 TTTTATGACAAAACAAAAAATCATAAAGATTTGAAATATATAATTGTTCAAATAGTAATAACTAT
257 TTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTAT
** * *
64964 TTGAACTTGCTCGATAAA-TAAATTTATTATTTAAATCT
322 TTGAACTTATTTGATAAACT-AATTTATTTTTTAAATCT
* * * *
65002 TTTACTTATTAATTTTAGAAATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATAA
1 CTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAATAAACTTGTATGA
* * * ** *
65067 ATAGAAATAATTGGTTTATGACAAAACAAATTGTCATAACGATTTGAAATAAATAATTGTTCAAA
66 ATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAA
* ** * *
65132 TAGTCATAACTA-TTGAA-TGTGTTCAAAAAACATATTTATTTTTTAAATATTTATTTATTAATT
131 TAGTCATAACTATTTAAACT-TGTTCAGTAAACAAATTTATTTTTT-AA-ATCTATTTATTAATT
* * * * * * *
65195 TTTGGAGTTTTAATAAATTTA-TATTATTTTATTCGAAATAAGCTTGCATGAA-CAGAACTAATT
193 TTTGAAATATTAATAAA-TTAGTATTATTTTATTCCAAATAAGCTTGTATGAATAAAAAC-AATT
* * * * * *
65258 ATTTTATGACAAAACAAATGGTCATAATGTTTTGAAATAGATAATTATTTAAATAGTCATAACTA
256 GTTTTATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTA
* * * *
65323 TTTGAACTTGTTTGGTAAAC-AGATTCATTTTTTTAATTCT
321 TTTGAACTTATTTGATAAACTA-ATTTA-TTTTTTAAATCT
* * ** ** * * * * *
65363 CTTACTCATTAAGTTTTGGTATATTAATAAATTAGA-GCTATTTTATTTCAAATAAGCTTATGTT
1 CTTACTTATTAATTTTTGAAATATTAATAAATTA-ATATTATTTTATTTCGAATAAACTTGTATG
* * * * ** *
65427 AATTGAAACAATTATTTTATTACAAAATAAAAGGTCACAATTATTTGAAATAGATAATTATTCAA
65 AATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAA
* * ** * *
65492 ATAGTCTTAACTATTTGAACTTGTTTGGTAAACATATTTATTTTTTAAATCTTTCACTTATTAAT
130 ATAGTCATAACTATTTAAACTTGTTCAGTAAACAAATTTATTTTTTAAATC--T-ATTTATTAAT
* ** * *
65557 TGTCAAAATATTAATAAATTAATATTATTTTAATT-CAAATAAGCTTGTATGAATAGAAACAATT
192 TTTTGAAATATTAATAAATTAGTATTATTTT-ATTCCAAATAAGCTTGTATGAATAAAAACAATT
* *
65621 GTTTTATTACAAAACAAAA-AGTCATAATAATTT
256 GTTTTATGACAAAACAAAAGA-TCATAATGATTT
65654 TGTTTACAAA
Statistics
Matches: 1384, Mismatches: 281, Indels: 112
0.78 0.16 0.06
Matches are distributed among these distances:
350 8 0.01
351 123 0.09
353 2 0.00
354 19 0.01
355 55 0.04
356 153 0.11
357 285 0.21
358 64 0.05
359 5 0.00
360 139 0.10
361 297 0.21
362 150 0.11
363 78 0.06
364 6 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.41
Consensus pattern (359 bp):
CTTACTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTCGAATAAACTTGTATGA
ATAGAAACAATTGTTTTATGACAAAATAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAA
TAGTCATAACTATTTAAACTTGTTCAGTAAACAAATTTATTTTTTAAATCTATTTATTAATTTTT
GAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGAATAAAAACAATTGTTTT
ATGACAAAACAAAAGATCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGA
ACTTATTTGATAAACTAATTTATTTTTTAAATCT
Found at i:65183 original size:15 final size:15
Alignment explanation
Indices: 65163--65192 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
65153 TTCAAAAAAC
*
65163 ATATTTATTTTTTAA
1 ATATTTATTTATTAA
65178 ATATTTATTTATTAA
1 ATATTTATTTATTAA
65193 TTTTTGGAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (15 bp):
ATATTTATTTATTAA
Found at i:65704 original size:16 final size:17
Alignment explanation
Indices: 65673--65705 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65663 AACTATTTCA
65673 AATAATTACGTCTATTTG
1 AATAATTAC-TCTATTTG
65691 AATAATTA-TCTATTT
1 AATAATTACTCTATTT
65706 CAAATTGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTACTCTATTTG
Found at i:65956 original size:181 final size:180
Alignment explanation
Indices: 65669--66309 Score: 667
Period size: 181 Copynumber: 3.5 Consensus size: 180
65659 ACAAAACTAT
* * * *
65669 TTCAAATAATTACGTCTATTTGAATAATTATCTATTTCAAATTGTTATTACCTTTTGTTTTATCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCA
* * * * * *
65734 TAAAACAAATGTTTTTGTTCATATAAGTTTGTTTGGAATAAAATAATATTAATTTATTAATATTT
66 TAAAACAATTGTTTTTATTCATACAAGCTTATTCGGAATAAAATAAT-TTAATTTATTAATATTT
* * *
65799 CAAAAATTAATATGTAAGAGATTTAAAAAATAAATTTGTTTGCCATACCAG
130 CAAAAATTAATAAGTAAGAGATTTAAAAAATGAATTTGTTTGCCATACAAG
* * * * * * *
65850 TTCAATTAGTTATAACTATTTGACCAAATATTTATTTCAAATTGTTATGACCATTTGTTTTATCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCA
* * * ** *
65915 TAAAACAATTGTTTTTGTTCATATAATCTTATTCGGAATAAAGCAATGCTAATTTATTAATATTT
66 TAAAACAATTGTTTTTATTCATACAAGCTTATTCGGAATAAAATAAT-TTAATTTATTAATATTT
** * * * * * **
65980 TGAAAATTAATAAGTAATG-GATTTAGAAAATGTATCT-TTTGGCTTGACTGG
130 CAAAAATTAATAAGTAA-GAGATTTAAAAAATGAATTTGTTTGCCAT-ACAAG
* * * ** *
66031 TGCAAACAATTATGACTATTTGATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCA
* * * * * * *
66096 CAAATCAATTGTTTTCATTCATACGAGCTTATTCAGAATAACATAATTCTAATTTATTAATATTC
66 TAAAACAATTGTTTTTATTCATACAAGCTTATTCGGAATAAAATAATT-TAATTTATTAATATTT
* * * *
66161 CAAAAATTAATAAGTGAGAGATTTAAAAAATGAATTTGTTTACTAAACAAG
130 CAAAAATTAATAAGTAAGAGATTTAAAAAATGAATTTGTTTGCCATACAAG
* * * * * * *
66212 TTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTATATTGTCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCA
*
66277 TAAAATAATT-TTTTCTATTCATACAAGCTTATT
66 TAAAACAATTGTTTT-TATTCATACAAGCTTATT
66310 TCAAATTTGT
Statistics
Matches: 368, Mismatches: 86, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
180 11 0.03
181 353 0.96
182 4 0.01
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.43
Consensus pattern (180 bp):
TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTATCA
TAAAACAATTGTTTTTATTCATACAAGCTTATTCGGAATAAAATAATTTAATTTATTAATATTTC
AAAAATTAATAAGTAAGAGATTTAAAAAATGAATTTGTTTGCCATACAAG
Found at i:66582 original size:301 final size:301
Alignment explanation
Indices: 66040--66587 Score: 688
Period size: 301 Copynumber: 1.8 Consensus size: 301
66030 GTGCAAACAA
* * *
66040 TTATGACTATTTGATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAATCAAT
1 TTATGACTATTGGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAAACAAT
* ** *
66105 TGTTTTCATTCATACGAGCTTATTCAGAATAACATAATTCTAATTTATTAATATTCCAAAAATTA
66 TATTTTCATTCATACGAGCTTACACAGAATAAAATAATTCTAATTTATTAATATTCCAAAAATTA
* * * * * * ** *
66170 ATAAGTGAGAGATTTAAAAAATGAATTTGTTTACTAAACAAGTTCAAATAATTATGGCTATTTGA
131 ATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATAATAACTATCTGA
** * *
66235 ACAATTATCTAGTTCAAATTGCTATAACCTTTTATATTGTCATAAAATAATTTTTTCTATTCATA
196 ACAATTATCTAGTTCAAATCACTATAACCTTTTATATTGCCATAAAACAATTTTTTCTATTCATA
66300 CAAGCTTATTTCAAATTTGTTTACCGAATAATTTTGAAAAG
261 CAAGCTTATTTCAAATTTGTTTACCGAATAATTTTGAAAAG
* * * *
66341 TTATGACTATTGGAACAATTATTTATTTCAAATCGTTATGACCTTTTTGTTTTGTCATAAAACAA
1 TTATGACTATTGGAACAATTATCTATTTCAAATCATTATGACC-TTTTGTTTTCTCACAAAACAA
** ** * * * * *
66406 TTATTTTTGTTCATATTAGCTTACACGGATTAAAATAATAT-TAATTTATTATTATTTCAACAAT
65 TTATTTTCATTCATACGAGCTTACACAGAATAAAATAAT-TCTAATTTATTAATATTCCAAAAAT
* *
66470 TAATAAGTAAAAGATTT-AAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTAATAACTATCT
129 TAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATAATAACTATCT
* * * * *
66534 GAATAATTATCTATTTCAAATCATTATGACCTTTTGT-TTCGCCATAAAACAATT
194 GAACAATTATCTAGTTCAAATCACTATAACCTTTTATATT-GCCATAAAACAATT
66588 ATATCAATTC
Statistics
Matches: 204, Mismatches: 40, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
300 2 0.01
301 119 0.58
302 82 0.40
303 1 0.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (301 bp):
TTATGACTATTGGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAAACAAT
TATTTTCATTCATACGAGCTTACACAGAATAAAATAATTCTAATTTATTAATATTCCAAAAATTA
ATAAGTAAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTCAAATAATAATAACTATCTGA
ACAATTATCTAGTTCAAATCACTATAACCTTTTATATTGCCATAAAACAATTTTTTCTATTCATA
CAAGCTTATTTCAAATTTGTTTACCGAATAATTTTGAAAAG
Found at i:66732 original size:181 final size:181
Alignment explanation
Indices: 66339--67730 Score: 1238
Period size: 181 Copynumber: 7.7 Consensus size: 181
66329 AATTTTGAAA
** *
66339 AGTTATGACTATTGGAACAATTATTTATTTCAAATCGTTATGACCTTTTTGTTTTGTCATAAAAC
1 AGTTATGACTATTTAAACAATTATTTATTTCAAATCATTATGACC-TTTTGTTTTGTCATAAAAC
* * * ** ** * * * * * *
66404 AATTATTTTTGTTCATATTAGCTTACACGGATTAAAATAATATTAATTTATTATTATTTCAACAA
65 AATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAA
* * * *
66469 TTAATAAGTAAAAGATTT-AAAAATAAATATGTTTGCCAAACAAGTTCAAAT
130 TTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAAT
* * * * * * * *
66520 AGTAATAACTATCTGAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTCGCCATAAAACA
1 AGTTATGACTATTTAAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
* * * * * * * * *
66585 ATTATATCAATTCGTATAGGCTTATTCGAAATAGAATAATACTAACTTATTACTATTCCAAAAAT
66 ATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAAT
* *
66650 TAATGAGTAAGAGATTTAAAAAATGAATCTATTTACCAAACAAGTTCAAAT
131 TAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAAT
* * ** * *
66701 AGTTATGACTGTTTGAACAATTATTTATTTCAAATTGTTATGACCTTTTGTTTTGCCATAAAATA
1 AGTTATGACTATTTAAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
* *
66766 ATTGTTTCTATTCATACAAGCTTATTTC-AAATAAAATAATA-TAAATTTACTAATATTCCAAAG
66 ATTGTTTCTATTCATACAAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTCCAAAA
* * * * *** *
66829 ATTAATAAGTAA-AAATATATAAAATAAATTTATTTTTTAAACACGTTCAAAAT
129 ATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTC-AAAT
* * * * *
66882 AATTATGACTATTTAAACAATTATCTATTTCAAATCGTTATAACCTTTTTGTTTTGTCATAAACC
1 AGTTATGACTATTTAAACAATTATTTATTTCAAATCATTATGACC-TTTTGTTTTGTCATAAAAC
* * * *
66947 GATTGTTTCTATTCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTTCAAAAA
65 AATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAA
* * * * ** ***
67012 TTAATAAGTAAAATATTTAAAAAATAAATTTGTTTACTGAGTGAGTTCAAAT
130 TTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAAT
* * ** *
67064 AATTATGACTATTTAAATAATTATTTATTTCAAATTGTTATGATCC-TTTGTTTTGTAATAAAAC
1 AGTTATGACTATTTAAACAATTATTTATTTCAAATCATTATGA-CCTTTTGTTTTGTCATAAAAC
** * * ***
67128 AATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACTAATTTACTAATATT-TTGAAA
65 AATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAA
* * * * ** * *
67192 --ACTAA-TAAGAGATTTAAAAACTATATCTATTTATCGGACCACTTCAAAT
130 TTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAAT
* * * * * *
67241 AGTTATGACTATTTTAATAATTATCTATCTT-AAATTGA-TATGATC-TTTGTTTTATCATAAAA
1 AGTTATGACTATTTAAACAATTATTTAT-TTCAAA-TCATTATGACCTTTTGTTTTGTCATAAAA
* * * * * * ** * *
67303 CAATTGTTTCTGTCCATACAAACCTATTCGAAATAAAATATTGCTAAACTAATAATATTCTAAAA
64 CAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAA
* *** *
67368 ATTAATAAGTAAGAGATTTAAAAAATAAATGTATTTGTTGAACCAA-TTCAAAT
129 ATTAATAAGTAAGAGATTTAAAAAATAAATCTATTT-ACCAAACAAGTTCAAAT
* * * * * *
67421 AGTTAAGACCA-TTATAATAATTATTTATTTCAAATCATTCTGACCTTTTGTTTAGTCATAAAAT
1 AGTTATGACTATTTA-AACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAAC
* * * * * *
67485 AATTGTTT-AATTCATACATGCTTATTCAAAATAAAATAATACTATTTTATTAACATTCAAAAAA
65 AATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAA
* * * * *
67549 TTAATAAGCAAG-GAATTAAAAAATAAATCTATTTACTAAACAACTTTAAAT
130 TTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAAT
* * * * * *
67600 AGTTATGATTATTTAAACAATTA-TCATTTTAAAATCATTGTGACCTTTTGTTTTATCATAAAAT
1 AGTTATGACTATTTAAACAATTATTTA-TTTCAAATCATTATGACCTTTTGTTTTGTCATAAAAC
* * * * ** *
67664 AATTATTTC-ACTTCATAAAAGCTTA-TCTAAAATAAAATAATATTACCTTATTAATATTTCAAA
65 AATTGTTTCTA-TTCATACAAGCTTATTC-GAAATAAAATAATACTAATTTATTAATATTCCAAA
67727 AATT
128 AATT
67731 GAGAAATAAT
Statistics
Matches: 985, Mismatches: 200, Indels: 53
0.80 0.16 0.04
Matches are distributed among these distances:
176 65 0.07
177 68 0.07
178 14 0.01
179 94 0.10
180 272 0.28
181 318 0.32
182 126 0.13
183 28 0.03
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (181 bp):
AGTTATGACTATTTAAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACA
ATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAAAAT
TAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCAAAT
Found at i:66735 original size:482 final size:482
Alignment explanation
Indices: 65857--66797 Score: 1191
Period size: 482 Copynumber: 2.0 Consensus size: 482
65847 CAGTTCAATT
* * *
65857 AGTTATAACTATTTGACCAAATATTTATTTCAAATTGTTATGACCATTTGTTTTATCATAAAACA
1 AGTTATAACTATTGGAACAAATATTTATTTCAAATCGTTATGACCATTTGTTTTATCATAAAACA
* * ** * * *
65922 ATTGTTTTTGTTCATATAATCTTATTCGGAATAAAGCAATGCTAATTTATTAATATTTTGAAAAT
66 ATTATTTTTGTTCATATAAGCTTACACGGAATAAAACAATACTAATTTATTAATATTTTCAAAAT
** ** * *** ** * * *
65987 TAATAAGTAATGGATTTAGAAAATGTATCTTTTGGCTTGACTGGTGCAAACAATTATGACTATTT
131 TAATAAGTAAAAGATTTAGAAAATAAATATTTTGGCCAAACAAGTGCAAACAATAATAACTATCT
* * * *
66052 GATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCTCACAAATCAATTGTTTTCATTCA
196 GATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCCCACAAAACAATTGATATCATTCA
* * *
66117 TACGAGCTTATTCAGAATAACATAATTCTAATTTATTAATATTCCAAAAATTAATAAGTGAGAGA
261 TACGAGCTTATTCAGAATAACATAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAGAGA
* * * *
66182 TTTAAAAAATGAATTTGTTTACTAAACAAGTTCAAATAATTATGGCTATTTGAACAATTATCTAG
326 TTTAAAAAATGAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTGAACAATTATCTAG
* *
66247 TTCAAATTGCTATAACCTTTTATATTGTCATAAAATAATTTTTTCTATTCATACAAGCTTATTTC
391 TTCAAATTGCTATAACCTTTTATATTGCCATAAAATAATTGTTTCTATTCATACAAGCTTATTTC
66312 AAATTTGTTTACCGAATAATTTTGAAA
456 AAATTTGTTTACCGAATAATTTTGAAA
* * * *
66339 AGTTATGACTATTGGAACAATTATTTATTTCAAATCGTTATGACCTTTTTGTTTTGTCATAAAAC
1 AGTTATAACTATTGGAACAAATATTTATTTCAAATCGTTATGACC-ATTTGTTTTATCATAAAAC
* * * * *
66404 AATTATTTTTGTTCATATTAGCTTACACGGATTAAAATAATATTAATTTATTATTA-TTTCAACA
65 AATTATTTTTGTTCATATAAGCTTACACGGAATAAAACAATACTAATTTATTAATATTTTCAA-A
* * *
66468 ATTAATAAGTAAAAGATTTA-AAAATAAATATGTTT-GCCAAACAAGTTCAAATAGTAATAACTA
129 ATTAATAAGTAAAAGATTTAGAAAATAAATAT-TTTGGCCAAACAAGTGCAAACAATAATAACTA
*
66531 TCTGAAT-AATTATCTATTTCAAATCATTATGACCTTTTG-TTTCGCCATAAAACAATT-ATATC
193 TCTG-ATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTC-CCACAAAACAATTGATATC
*
66593 AATTCGTATA-G-GCTTATTC-GAAATAGA-ATAATACTAACTTATTACTATTCCAAAAATTAAT
256 -ATTC--ATACGAGCTTATTCAG-AATA-ACATAATACTAACTTATTAATATTCCAAAAATTAAT
* * *
66654 GAGTAAGAGATTTAAAAAATGAATCTATTTACCAAACAAGTTCAAATAGTTATGACTGTTTGAAC
316 AAGTAAGAGATTTAAAAAATGAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTGAAC
* * * * * *
66719 AATTATTTATTTCAAATTGTTATGACCTTTTGTTTTGCCATAAAATAATTGTTTCTATTCATACA
381 AATTATCTAGTTCAAATTGCTATAACCTTTTATATTGCCATAAAATAATTGTTTCTATTCATACA
66784 AGCTTATTTCAAAT
446 AGCTTATTTCAAAT
66798 AAAATAATAT
Statistics
Matches: 390, Mismatches: 59, Indels: 20
0.83 0.13 0.04
Matches are distributed among these distances:
481 8 0.02
482 291 0.75
483 88 0.23
484 3 0.01
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.41
Consensus pattern (482 bp):
AGTTATAACTATTGGAACAAATATTTATTTCAAATCGTTATGACCATTTGTTTTATCATAAAACA
ATTATTTTTGTTCATATAAGCTTACACGGAATAAAACAATACTAATTTATTAATATTTTCAAAAT
TAATAAGTAAAAGATTTAGAAAATAAATATTTTGGCCAAACAAGTGCAAACAATAATAACTATCT
GATCAATTATCTATTTCAAATCATTATGACCTTTTGTTTTCCCACAAAACAATTGATATCATTCA
TACGAGCTTATTCAGAATAACATAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAGAGA
TTTAAAAAATGAATCTATTTACCAAACAAGTTCAAATAATTATGACTATTTGAACAATTATCTAG
TTCAAATTGCTATAACCTTTTATATTGCCATAAAATAATTGTTTCTATTCATACAAGCTTATTTC
AAATTTGTTTACCGAATAATTTTGAAA
Found at i:66926 original size:663 final size:664
Alignment explanation
Indices: 65684--66973 Score: 1558
Period size: 663 Copynumber: 1.9 Consensus size: 664
65674 ATAATTACGT
* * * * *
65684 CTATTTGAATAATTATCTATTTCAAATTGTTATTACCTTTTGTTTTATCATAAAACAAATGTTTT
1 CTATTGGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAACAAATATTTT
* **** *
65749 TGTTCATATAAGTTTGTTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATATGT
66 TGTTCATATAAGCTTACACGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAGT
* * * * * * * *
65814 AAGAGATTTAAAAAATAAATTTGTTTGCCATACCAGTTCAATTAGTTATAACTATTTGACCAAAT
131 AAAAGATTTAAAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTAATAACTATCTGAACAAAT
* ** * * * * *** *
65879 ATTTATTTCAAATTGTTATGACCATTTGTTTTATCATAAAACAATTGTTTTTGTTCATATAATCT
196 ATCTATTTCAAATCATTATGACCATTTGTTTCACCATAAAACAATTATATCAATTCATATAAGCT
* * * *** *
65944 TATTCGGAATAAAGCAATGCTAATTTATTAATATTTTGAAAATTAATAAGTAATGGATTTAGAAA
261 TATTCGAAATAAAGCAATACTAACTTATTAATATTCCAAAAATTAATAAGTAATGGATTTAAAAA
* * *** ** *
66009 ATGTATCTTTTGGCTTGACTGGTGCAAACAATTATGACTATTTGATCAATTATCTATTTCAAATC
326 ATGAATCTTTTGACCAAACAAGTGCAAACAATTATGACTATTTGAACAATTATCTATTTCAAATC
* * *
66074 ATTATGACCTTTTGTTTTCTCACAAATCAATTGTTTTCATTCATACGAGCTTATTCAGAATAACA
391 ATTATGACCTTTTGTTTTCTCAAAAATCAATTGTTTTCATTCATACAAGCTTATTCAGAATAAAA
* * * * * * *
66139 TAATTCTAATTTATTAATATTCCAAAAATTAATAAGTGAGAGATTTAAAAAATGAATTTGTTTAC
456 TAATTCAAATTTACTAATATTCCAAAAATTAATAAGTGAAAAATATAAAAAATAAATTTATTTAC
* * *
66204 TAAACAAGTTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCTATAACC-TTTT
521 TAAACAAGTTCAAATAATTATGACTATTTAAACAATTATCTAGTTCAAATCGCTATAACCTTTTT
* * *
66268 ATATTGTCATAAAATAATTTTTTCTATTCATACAAGCTTATTTCAAATTTGTTTACCGAATAATT
586 ATATTGTCATAAAACAATTGTTTCTATTCATAAAAGCTTATTTCAAATTTGTTTACCGAATAATT
66333 TTGAAAAGTTATGA
651 TTGAAAAGTTATGA
* * *
66347 CTATTGGAACAATTATTTATTTCAAATCGTTATGACCTTTTTGTTTTGTCATAAAACAATTATTT
1 CTATTGGAACAATTATCTATTTCAAATCGTTATGACC-TTTTGTTTTATCATAAAACAAATATTT
* * * *
66412 TTGTTCATATTAGCTTACACGGATTAAAATAATATTAATTTATTATTATTTCAACAATTAATAAG
65 TTGTTCATATAAGCTTACACGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG
* *
66477 TAAAAGATTT-AAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTAATAACTATCTGAATAAT
130 TAAAAGATTTAAAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTAATAACTATCTGAACAAA
* * * *
66541 TATCTATTTCAAATCATTATGACCTTTTGTTTCGCCATAAAACAATTATATCAATTCGTATAGGC
195 TATCTATTTCAAATCATTATGACCATTTGTTTCACCATAAAACAATTATATCAATTCATATAAGC
* * *
66606 TTATTCGAAATAGAA-TAATACTAACTTATTACTATTCCAAAAATTAATGAGTAA-GAGATTTAA
260 TTATTCGAAATA-AAGCAATACTAACTTATTAATATTCCAAAAATTAATAAGTAATG-GATTTAA
* * * * *
66669 AAAATGAATCTATTT-ACCAAACAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTATTTCA
323 AAAATGAATCT-TTTGACCAAACAAGTGCAAACAATTATGACTATTTGAACAATTATCTATTTCA
**
66733 AATTGTTATGACCTTTTGTTTTGC-CATAAAAT-AATTG-TTTCTATTCATACAAGCTTATTTCA
387 AATCATTATGACCTTTTGTTTT-CTCA-AAAATCAATTGTTTTC-ATTCATACAAGCTTA-TTCA
* *
66795 -AATAAAATAATAT-AAATTTACTAATATTCCAAAGATTAATAAGT-AAAAATATATAAAATAAA
448 GAATAAAATAAT-TCAAATTTACTAATATTCCAAAAATTAATAAGTGAAAAATATAAAAAATAAA
** * * *
66857 TTTATTTTTTAAACACGTTCAAAATAATTATGACTATTTAAACAATTATCTATTTCAAATCGTTA
512 TTTATTTACTAAACAAGTTC-AAATAATTATGACTATTTAAACAATTATCTAGTTCAAATCGCTA
* * * *
66922 TAACCTTTTTGTTTTGTCATAAACCGATTGTTTCTATTCATAAAAGCTTATT
576 TAACCTTTTTATATTGTCATAAAACAATTGTTTCTATTCATAAAAGCTTATT
66974 CGAAATAAAA
Statistics
Matches: 521, Mismatches: 95, Indels: 21
0.82 0.15 0.03
Matches are distributed among these distances:
662 34 0.07
663 345 0.66
664 142 0.27
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.42
Consensus pattern (664 bp):
CTATTGGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAAACAAATATTTT
TGTTCATATAAGCTTACACGGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAGT
AAAAGATTTAAAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTAATAACTATCTGAACAAAT
ATCTATTTCAAATCATTATGACCATTTGTTTCACCATAAAACAATTATATCAATTCATATAAGCT
TATTCGAAATAAAGCAATACTAACTTATTAATATTCCAAAAATTAATAAGTAATGGATTTAAAAA
ATGAATCTTTTGACCAAACAAGTGCAAACAATTATGACTATTTGAACAATTATCTATTTCAAATC
ATTATGACCTTTTGTTTTCTCAAAAATCAATTGTTTTCATTCATACAAGCTTATTCAGAATAAAA
TAATTCAAATTTACTAATATTCCAAAAATTAATAAGTGAAAAATATAAAAAATAAATTTATTTAC
TAAACAAGTTCAAATAATTATGACTATTTAAACAATTATCTAGTTCAAATCGCTATAACCTTTTT
ATATTGTCATAAAACAATTGTTTCTATTCATAAAAGCTTATTTCAAATTTGTTTACCGAATAATT
TTGAAAAGTTATGA
Found at i:67072 original size:363 final size:358
Alignment explanation
Indices: 66339--67730 Score: 1353
Period size: 363 Copynumber: 3.9 Consensus size: 358
66329 AATTTTGAAA
*
66339 AGTTATGACTATTGGAACAATTATTTATTTCAAATCGTTATGACCTTTTTGTTTTGTCATAAAAC
1 AGTTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGACC-TTTTGTTTTGTCATAAAAC
* * * ** ** ** * * * * *
66404 AATTATTTTTGTTCATATTAGCTTACACGGATTAAAATAATATTAATTTATTATTATTTCAACAA
65 AATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTACTAATATTCCAA-AA
* * * * * * * *
66469 TTAATAAGTAAAAGATTTAAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTAATAACTATCT
129 TTAATAAGTAAAA-ATTTAAAAATAAATCTATTTTCTAAAC-ACTTCAAATAGTTATGACTATTT
* * *** * * *
66534 GAATAATTATCTATTTCAAATCATTATGACCTTTTGTTTCGCCATAAAACAATTATATCAATTCG
192 AAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTATTTCTATTCA
* * * * * *
66599 TATAGGCTTATTCGAAATAGAATAATACTAACTTATTACTATTCCAAAAATTAATGAGTAAGAGA
257 TAAAAGCTTATTCGAAATAAAATAATACTAACTTATTAATATTTCAAAAATTAATAAGTAAGAGA
* **
66664 TTTAAAAAATGAATCTATTTACCAAACAAGTTCAAAT
322 TTTAAAAAATAAATCTATTTACTGAACAAGTTCAAAT
* * * *
66701 AGTTATGACTGTTTGAACAATTATTTATTTCAAATTGTTATGACCTTTTGTTTTGCCATAAAATA
1 AGTTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACA
66766 ATTGTTTCTATTCATACAAGCTTATTTC-AAATAAAATAATA-TAAATTTACTAATATTCCAAAG
66 ATTGTTTCTATTCATACAAGCTTA-TTCAAAATAAAATAATACT-AATTTACTAATATTCCAAA-
* * * *
66829 ATTAATAAGTAAAAATATATAAAATAAATTTATTTTTTAAACACGTTCAAAATAATTATGACTAT
128 ATTAATAAGTAAAAATTTA-AAAATAAATCTATTTTCTAAACAC-TTC-AAATAGTTATGACTAT
* * * * * *
66894 TTAAACAATTATCTATTTCAAATCGTTATAACCTTTTTGTTTTGTCATAAACCGATTGTTTCTAT
190 TTAAACAATTATCTATTTCAAATCATTATGACC-TTTTGTTTTATCATAAAACAATTATTTCTAT
* * *
66959 TCATAAAAGCTTATTCGAAATAAAATAATACTAATTTATTAAAATTTCAAAAATTAATAAGTAAA
254 TCATAAAAGCTTATTCGAAATAAAATAATACTAACTTATTAATATTTCAAAAATTAATAAGTAAG
* * * ***
67024 ATATTTAAAAAATAAATTTGTTTACTGAGTGAGTTCAAAT
319 AGATTTAAAAAATAAATCTATTTACTGAACAAGTTCAAAT
* * * * *
67064 AATTATGACTATTTAAATAATTATTTATTTCAAATTGTTATGATCC-TTTGTTTTGTAATAAAAC
1 AGTTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGA-CCTTTTGTTTTGTCATAAAAC
** **
67128 AATTGTTTCTATTCATACAAAATTATTCAAAATAAAATAATACTAATTTACTAATATTTTGAAAA
65 AATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTACTAATA-TTCCAAAA
* * * ** *
67193 CTAATAAG---AGATTTAAAAACTATATCTATTTATCGGACCACTTCAAATAGTTATGACTATTT
129 TTAATAAGTAAAAATTTAAAAA-TAAATCTATTT-TCTAAACACTTCAAATAGTTATGACTATTT
* * * * * * *
67255 TAATAATTATCTATCTT-AAATTGA-TATGATC-TTTGTTTTATCATAAAACAATTGTTTCTGTC
192 AAACAATTATCTAT-TTCAAA-TCATTATGACCTTTTGTTTTATCATAAAACAATTATTTCTATT
* * * *
67317 CATACAAA-CCTATTCGAAATAAAATATTGCTAAAC-TAATAATA-TTCTAAAAATTAATAAGTA
255 CATA-AAAGCTTATTCGAAATAAAATAATACT-AACTTATTAATATTTC-AAAAATTAATAAGTA
* **
67379 AGAGATTTAAAAAATAAATGTATTTGTTGAACCAA-TTCAAAT
317 AGAGATTTAAAAAATAAATCTATTTACTGAA-CAAGTTCAAAT
* * * * * * *
67421 AGTTAAGACCATTAT-AATAATTATTTATTTCAAATCATTCTGACCTTTTGTTTAGTCATAAAAT
1 AGTTATGACTATT-TGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAAC
* * * * * *
67485 AATTGTTT-AATTCATACATGCTTATTCAAAATAAAATAATACTATTTTATTAACATTCAAAAAA
65 AATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTACTAATATTC-CAAAA
* * * * * *
67549 TTAATAAGCAAGGAATTAAAAAATAAATCTATTTACTAAACAACTTTAAATAGTTATGATTATTT
129 TTAATAAGTAA-AAATTTAAAAATAAATCTATTTTCTAAAC-ACTTCAAATAGTTATGACTATTT
* * *
67614 AAACAATTATC-ATTTTAAAATCATTGTGACCTTTTGTTTTATCATAAAATAATTATTTC-ACTT
192 AAACAATTATCTA-TTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTATTTCTA-TT
* * *
67677 CATAAAAGCTTA-TCTAAAATAAAATAATATTACCTTATTAATATTTCAAAAATT
255 CATAAAAGCTTATTC-GAAATAAAATAATACTAACTTATTAATATTTCAAAAATT
67731 GAGAAATAAT
Statistics
Matches: 844, Mismatches: 150, Indels: 74
0.79 0.14 0.07
Matches are distributed among these distances:
355 2 0.00
356 56 0.07
357 160 0.19
358 15 0.02
359 97 0.11
360 94 0.11
361 105 0.12
362 87 0.10
363 220 0.26
364 8 0.01
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.40
Consensus pattern (358 bp):
AGTTATGACTATTTGAACAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACA
ATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTACTAATATTCCAAAATT
AATAAGTAAAAATTTAAAAATAAATCTATTTTCTAAACACTTCAAATAGTTATGACTATTTAAAC
AATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTATTTCTATTCATAAA
AGCTTATTCGAAATAAAATAATACTAACTTATTAATATTTCAAAAATTAATAAGTAAGAGATTTA
AAAAATAAATCTATTTACTGAACAAGTTCAAAT
Found at i:67361 original size:176 final size:180
Alignment explanation
Indices: 66607--67705 Score: 672
Period size: 180 Copynumber: 6.1 Consensus size: 180
66597 CGTATAGGCT
* * * * * *
66607 TATTCGAAATAGAATAATACT-AACTTATTACTATTCCAAAAATTAATGAGTAAGAGATTTAAAA
1 TATTCAAAATAAAATAATACTAAAC-TAATAATATTCTAAAAA-TAATAAGTAAGAGATTTAAAA
* * * * * * *
66671 AATGAATCTATTTA-CCAAACAAGTTCAAATAGTTATGACTGTTTGAACAATTATTTATTTCAAA
64 AATAAATCTATTTATCGAACCAA-TTCAAATAGTTATGACTATTTTAATAATTATCTATTTCAAA
* *** * * *
66735 TTGTTATGA-CCTTTTGTTTTGCCATAAAATAATTGTTTCTATTCATAC-AAGC
128 TTGATATGATCC-TTTGTTTTATAATAAAACAATTGTTTCTATCCATACAAAAC
* * * * * * *
66787 TTATTTC-AAATAAAATAATA-TAAATTTACTAATATTCCAAAGATTAATAAGTAA-AAATATAT
1 -TA-TTCAAAATAAAATAATACTAAA-CTAATAATATTCTAAA-AATAATAAGTAAGAGATTTAA
* ** * * * * *
66849 AAAATAAATTTATTT-TTTAAACACGTTCAAAATAATTATGACTATTTAAACAATTATCTATTTC
62 AAAATAAATCTATTTATCGAACCA-ATTC-AAATAGTTATGACTATTTTAATAATTATCTATTTC
* * * * * * * * *
66913 AAATCGTTAT-AACCTTTTTGTTTTGTCATAAACCGATTGTTTCTATTCATA-AAAGC
125 AAATTGATATGATCC--TTTGTTTTATAATAAAACAATTGTTTCTATCCATACAAAAC
* ** * * * *
66969 TTATTCGAAATAAAATAATACTAATTTATTAAAATT-TCAAAAATTAATAAGTAAAATATTTAAA
1 -TATTCAAAATAAAATAATACTAAACTAATAATATTCT-AAAAA-TAATAAGTAAGAGATTTAAA
* * *** * * * *
67033 AAATAAATTTGTTTA-CTGAGTGAGTTCAAATAATTATGACTATTTAAATAATTATTTATTTCAA
63 AAATAAATCTATTTATC-GAACCAATTCAAATAGTTATGACTATTTTAATAATTATCTATTTCAA
* * * *
67097 ATTGTTATGATCCTTTGTTTTGTAATAAAACAATTGTTTCTATTCATACAAAAT
127 ATTGATATGATCCTTTGTTTTATAATAAAACAATTGTTTCTATCCATACAAAAC
** * ** * *
67151 TATTCAAAATAAAATAATACTAATTTACTAATATT-TTGAAA-ACTAA-TAAGAGATTTAAAAAC
1 TATTCAAAATAAAATAATACTAAACTAATAATATTCTAAAAATAATAAGTAAGAGATTTAAAAAA
* * *
67213 TATATCTATTTATCGGACCACTTCAAATAGTTATGACTATTTTAATAATTATCTATCTT-AAATT
66 TAAATCTATTTATCGAACCAATTCAAATAGTTATGACTATTTTAATAATTATCTAT-TTCAAATT
* * *
67277 GATATGAT-CTTTGTTTTATCATAAAACAATTGTTTCTGTCCATACAAACC
130 GATATGATCCTTTGTTTTATAATAAAACAATTGTTTCTATCCATACAAAAC
* * *
67327 TATTCGAAATAAAATATTGCTAAACTAATAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAA
1 TATTCAAAATAAAATAATACTAAACTAATAATATTCTAAAAA-TAATAAGTAAGAGATTTAAAAA
* * * * * * *
67392 ATAAATGTATTTGTTGAACCAATTCAAATAGTTAAGACCATTATAATAATTATTTATTTCAAA-T
65 ATAAATCTATTTATCGAACCAATTCAAATAGTTATGACTATTTTAATAATTATCTATTTCAAATT
* * * * * * **
67456 CATTCTGA-CCTTT-TGTTTAGTCATAAAATAATTGTTT-AATTCATAC-ATGC
130 GA-TATGATCCTTTGT-TTTA-TAATAAAACAATTGTTTCTATCCATACAAAAC
*** * * * * *
67506 TTATTCAAAATAAAATAATACTATTTTATTAACATTCAAAAAATTAATAAGCAAG-GAATTAAAA
1 -TATTCAAAATAAAATAATACTAAACTAATAATATTCTAAAAA-TAATAAGTAAGAGATTTAAAA
* * * * * * *
67570 AATAAATCTATTTA-CTAAACAACTTTAAATAGTTATGATTATTTAAACAATTATC-ATTTTAAA
64 AATAAATCTATTTATCGAACCAA-TTCAAATAGTTATGACTATTTTAATAATTATCTATTTCAAA
* * * * * * * *
67633 ATCATTGTGA-CCTTTTGTTTTATCATAAAATAATTATTTC-ACTTCATA-AAAGC
128 TTGA-TATGATCC-TTTGTTTTATAATAAAACAATTGTTTCTA-TCCATACAAAAC
67686 T-TATCTAAAATAAAATAATA
1 TAT-TC-AAAATAAAATAATA
67706 TTACCTTATT
Statistics
Matches: 749, Mismatches: 129, Indels: 81
0.78 0.13 0.08
Matches are distributed among these distances:
176 65 0.09
177 72 0.10
178 20 0.03
179 85 0.11
180 187 0.25
181 166 0.22
182 123 0.16
183 29 0.04
184 2 0.00
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.40
Consensus pattern (180 bp):
TATTCAAAATAAAATAATACTAAACTAATAATATTCTAAAAATAATAAGTAAGAGATTTAAAAAA
TAAATCTATTTATCGAACCAATTCAAATAGTTATGACTATTTTAATAATTATCTATTTCAAATTG
ATATGATCCTTTGTTTTATAATAAAACAATTGTTTCTATCCATACAAAAC
Found at i:67742 original size:36 final size:36
Alignment explanation
Indices: 67698--67771 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
67688 ATCTAAAATA
*
67698 AAATAATATTACCTTATTAATATTTCAAAAATTGAG
1 AAATAATATTACCTTATTAATATTTCAAAAATTAAG
*
67734 AAATAATATTACTTTATTAATATTTCAAAAATTAAG
1 AAATAATATTACCTTATTAATATTTCAAAAATTAAG
67770 AA
1 AA
67772 GTTGGAGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (36 bp):
AAATAATATTACCTTATTAATATTTCAAAAATTAAG
Found at i:68078 original size:21 final size:21
Alignment explanation
Indices: 68053--68117 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
68043 AGTTACAAAT
68053 ATATTTATTTAAATAGTTTTA
1 ATATTTATTTAAATAGTTTTA
*
68074 ATATTTACTT---T-G-TTTA
1 ATATTTATTTAAATAGTTTTA
* *
68090 TTTATTTATTTAAATAATTTTA
1 -ATATTTATTTAAATAGTTTTA
68112 ATATTT
1 ATATTT
68118 TCTTTGTTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 12
0.66 0.10 0.24
Matches are distributed among these distances:
16 4 0.12
17 9 0.27
18 1 0.03
20 1 0.03
21 14 0.42
22 4 0.12
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.62
Consensus pattern (21 bp):
ATATTTATTTAAATAGTTTTA
Found at i:68101 original size:38 final size:38
Alignment explanation
Indices: 68054--68131 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
68044 GTTACAAATA
*
68054 TATTTATTTAAATAGTTTTAATATTTACTTTGTTTATT
1 TATTTATTTAAATAATTTTAATATTTACTTTGTTTATT
*
68092 TATTTATTTAAATAATTTTAATATTTTCTTTGTTTATT
1 TATTTATTTAAATAATTTTAATATTTACTTTGTTTATT
68130 TA
1 TA
68132 AATAAACGTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (38 bp):
TATTTATTTAAATAATTTTAATATTTACTTTGTTTATT
Found at i:68195 original size:19 final size:19
Alignment explanation
Indices: 68140--68246 Score: 75
Period size: 19 Copynumber: 5.7 Consensus size: 19
68130 TAAATAAACG
68140 TAATAGTATAATAATT-TAT
1 TAATA-TATAATAATTATAT
*
68159 TACTATACTATTATAATTATAT
1 TA--ATA-TATAATAATTATAT
*
68181 TAATATATAATAATTATAA
1 TAATATATAATAATTATAT
68200 TACA-AT-TAAT-ATTA-AT
1 TA-ATATATAATAATTATAT
* *
68216 TATTAT-TAATAAAGTATAT
1 TAATATATAAT-AATTATAT
68235 TAAT-TATAATAA
1 TAATATATAATAA
68247 AGTATTATAT
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
16 9 0.13
17 4 0.06
18 10 0.14
19 27 0.38
20 4 0.06
21 12 0.17
22 5 0.07
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.46
Consensus pattern (19 bp):
TAATATATAATAATTATAT
Found at i:68207 original size:25 final size:25
Alignment explanation
Indices: 68179--68238 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
68169 TTATAATTAT
68179 ATTAATATATAATAATTA-TAATACA
1 ATTAATAT-TAATAATTATTAATACA
*
68204 ATTAATATTAATTATTATTAATA-A
1 ATTAATATTAATAATTATTAATACA
*
68228 AGT-ATATTAAT
1 ATTAATATTAAT
68239 TATAATAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
23 8 0.25
24 11 0.34
25 13 0.41
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (25 bp):
ATTAATATTAATAATTATTAATACA
Found at i:68352 original size:12 final size:12
Alignment explanation
Indices: 68301--68357 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 12
68291 CTAATCTTGC
68301 TTAAATATTACTA
1 TTAAATATTA-TA
68314 TTAAATTATTATAA
1 TTAAA-TATTAT-A
*
68328 TCTTTAATAATTATA
1 --TTAAAT-ATTATA
68343 TTAAATATTATA
1 TTAAATATTATA
68355 TTA
1 TTA
68358 TTTAATATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
12 9 0.24
13 11 0.30
14 6 0.16
15 2 0.05
16 9 0.24
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (12 bp):
TTAAATATTATA
Found at i:68361 original size:28 final size:30
Alignment explanation
Indices: 68307--68372 Score: 84
Period size: 28 Copynumber: 2.3 Consensus size: 30
68297 TTGCTTAAAT
*
68307 ATTACTATTAAATTATTATAATCTTTAATA
1 ATTACTATTAAATTATTATAATATTTAATA
*
68337 ATTA-TATTAAA-TATTATATTATTTAAT-
1 ATTACTATTAAATTATTATAATATTTAATA
68364 ATTAACTAT
1 ATT-ACTAT
68373 ATTTATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 3 0.09
28 15 0.47
29 10 0.31
30 4 0.12
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (30 bp):
ATTACTATTAAATTATTATAATATTTAATA
Found at i:69089 original size:181 final size:180
Alignment explanation
Indices: 68851--69456 Score: 452
Period size: 180 Copynumber: 3.4 Consensus size: 180
68841 GTTTGTTTGA
* * * * * *
68851 AATAAAATAATATTATTTTATTAATATTT-AGAAAATAAATCTA-TAAGAAATTTAAAAAGA-AA
1 AATAAAATAATACTAATTTAATAATATTTCA-AAAATTAAT-AACCAAGAAATTTAAAAA-ATAA
* * ** * *
68913 ATTTGCTTACCAAACCATTTCAAATAGTTTTGACTATGTCAATAATTATTTATTTCAAATCGTTA
63 ATTTGATTACCAAACCAGTTCAAATAGTTAAGACTATATCAATAATTATCTATTTCAAATCGTTA
* * * * * **
68978 TAACCTTTTATTTTATCATCAAACAATTGGTTCTGTTCATACTATTTTATTTAG
128 TAACCTTTTATTTTAACATAAAACAATT-ATTCTATTCATACAAACTTATTTAG
* *
69032 AATAAAATAATACTAATTTAATAATATTTCGAAACTTAATAACCAAGTAAA-TTAAAAAATAAAT
1 AATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAACCAAG-AAATTTAAAAAATAAAT
* * **** * * * * *
69096 CTAATTGTTGAACCAGTTCAAATAGTTAAGACTCTATGAATGATTATCTATTTCAAATTGTTATG
65 TTGATTACCAAACCAGTTCAAATAGTTAAGACTATATCAATAATTATCTATTTCAAATCGTTATA
* * * * *
69161 ACCTTTTCTTTTAACGTAAAACAATTATTTTATTCGTACAAACTTATTTGG
130 ACCTTTTATTTTAACATAAAACAATTATTCTATTCATACAAACTTATTTAG
* * **
69212 ATTAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAAATTTAAAAAATAAATT
1 AATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAACCAAGAAATTTAAAAAATAAATT
* ** ** * * * * * * * * *
69277 TGTTTACTGAGTCAATTCAAATGGTTAAAATTAT-TAGAATAATTATCTATTTCACATCATTTTG
66 TGATTACCAAACCAGTTCAAATAGTTAAGACTATAT-CAATAATTATCTATTTCAAATCGTTATA
* * * * * * *
69341 ATCTTTT-GTTTAGTCATAAAACAATTGTTTTAGTTCATACAAGCTTATTCAG
130 ACCTTTTATTTTA-ACATAAAACAATTATTCTA-TTCATACAAACTTATTTAG
* * * * *** *
69393 AATAAATTAATACTAATTT-TTAACATTTGAAAAATTAATATGAAAGAGATTTAAAAAAATAAAT
1 AATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAACCAAGAAATTT-AAAAAATAAAT
69457 CTATTTACTG
Statistics
Matches: 339, Mismatches: 77, Indels: 18
0.78 0.18 0.04
Matches are distributed among these distances:
179 8 0.02
180 168 0.50
181 160 0.47
182 3 0.01
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
AATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAACCAAGAAATTTAAAAAATAAATT
TGATTACCAAACCAGTTCAAATAGTTAAGACTATATCAATAATTATCTATTTCAAATCGTTATAA
CCTTTTATTTTAACATAAAACAATTATTCTATTCATACAAACTTATTTAG
Found at i:69270 original size:180 final size:178
Alignment explanation
Indices: 68770--69480 Score: 540
Period size: 181 Copynumber: 3.9 Consensus size: 178
68760 TATAACTATT
* * * * * *
68770 TGAACAATTATCTA-TTCTAAATCATTATTACCTTTTGTTTTGTTATAAAACAATTGTTTTTGTT
1 TGAATAATTATCTATTTC-AAATCGTTATGACCTTTT-TTTTATCATAAAACAATTG-TTTTATT
* * ** * * * * * * *
68834 AATATAAGTTTGTTT-GAAATAAAATAATATTATTTTATTAATATTT-AGAAAATAAATCTA-TA
63 CATACAAACTTATTTAG-AATAAAATAATACTAATTTAATAATATTTCA-AAAATTAAT-AAGAA
* ** ** * **
68896 AGAAATTTAAAAAGA-AAATTTGCTTACCAAACCATTTCAAATAGTTTTGAC-TA
125 AGAAATTTAAAAA-ATAAATCTAATTACTGAACCAATTCAAATAGTTAAGACTTA
* * * * *
68949 TGTCAATAATTATTTATTTCAAATCGTTATAACCTTTTATTTTATCATCAAACAATTGGTTCTGT
1 TG--AATAATTATCTATTTCAAATCGTTATGACCTTTT-TTTTATCATAAAACAATT-GTTTTAT
* ** * * **
69014 TCATACTATTTTATTTAGAATAAAATAATACTAATTTAATAATATTTCGAAACTTAATAACCAAG
62 TCATACAAACTTATTTAGAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAAG
** *
69079 TAAA-TTAAAAAATAAATCTAATTGTTGAACCAGTTCAAATAGTTAAGACTCTA
127 -AAATTTAAAAAATAAATCTAATTACTGAACCAATTCAAATAGTTAAGACT-TA
* * * * * *
69132 TGAATGATTATCTATTTCAAATTGTTATGACCTTTTCTTTTAACGTAAAACAATTATTTTATTCG
1 TGAATAATTATCTATTTCAAATCGTTATGACCTTTT-TTTTATCATAAAACAATTGTTTTATTCA
* * * *
69197 TACAAACTTATTTGGATTAAAATAATACTAATTTAATAATATTTTAAAAATTAATAAGTAAGAAA
65 TACAAACTTATTTAGAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAAGAAA
* ** ** * *
69262 TTTAAAAAATAAATTTGTTTACTGAGTCAATTCAAATGGTTAA-AATTA
130 TTTAAAAAATAAATCTAATTACTGAACCAATTCAAATAGTTAAGACTTA
* * * * *
69310 TTAGAATAATTATCTATTTCACATCATTTTGATCTTTTGTTTAGTCATAAAACAATTGTTTTAGT
1 -T-GAATAATTATCTATTTCAAATCGTTATGACCTTTTTTTTA-TCATAAAACAATTGTTTTA-T
* * * * * * *
69375 TCATACAAGCTTATTCAGAATAAATTAATACTAATTT-TTAACATTTGAAAAATTAATATGAAAG
62 TCATACAAACTTATTTAGAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAAG
* * *
69439 AGATTTAAAAAAATAAATCTATTTACTGAACAAATTCAAATA
127 AAATTT-AAAAAATAAATCTAATTACTGAACCAATTCAAATA
69481 AGTAAGTCAT
Statistics
Matches: 423, Mismatches: 92, Indels: 32
0.77 0.17 0.06
Matches are distributed among these distances:
178 2 0.00
179 12 0.03
180 165 0.39
181 232 0.55
182 8 0.02
183 4 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (178 bp):
TGAATAATTATCTATTTCAAATCGTTATGACCTTTTTTTTATCATAAAACAATTGTTTTATTCAT
ACAAACTTATTTAGAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAAGAAAT
TTAAAAAATAAATCTAATTACTGAACCAATTCAAATAGTTAAGACTTA
Found at i:69790 original size:181 final size:181
Alignment explanation
Indices: 69477--70616 Score: 860
Period size: 181 Copynumber: 6.3 Consensus size: 181
69467 AACAAATTCA
** * * * * * * * * **
69477 AATAAGTAAGTCATTTAAAAAGTGAATATGTTTACCAAATCAGTTCAAATAATTATGGCCATTTC
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAATCAATTCAAATAGTTATGACTATTAG
* * * ** * * *
69542 AATAATTATCTATTTCAAATTGTTCTTG-CCTTTTGTTTGGTCATATGACAATTGTTTTTGA-TC
66 AATAATTATCTATTTCAAATCGTT-ATGACCTTTTGTTTTGTCATAAAATAATTATTTCT-ATTC
*
69605 ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATCTTTCAAAAATT
129 ATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATT
69658 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAATCAATTCAAATAGTTATGACTATTAG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAATCAATTCAAATAGTTATGACTATTAG
* * * * * * * * *
69723 AGTAGTTGTATACTTAAAATTGTTATAACCTTTTGTTTTGTCATAAAATAATTATTTCTGTTCAT
66 AATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATTCAT
* * * *
69788 ACAAGCTTATTTGAAATAAAATAAAACTAATCTAATAATA-TTCTAAAAATT
131 ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTC-AAAAATT
* * * **
69839 AATAACTAAGAGATTTAAAAAATAAAAT-TGTTTATCAAACT-AGTTCAAATAGTTAAAACTA-T
1 AATAAGTAAGAGATTTAAAAAAT-AAATCTGTTTA-CAAAATCAATTCAAATAGTTATGACTATT
* * * *
69901 ATGAATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAA-TATTTTCAAT
64 A-GAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTA-TTTCTAT
** * * *
69965 TCATAGTAGCTTATT-TAGAATAAAATAA-AATAAATTTATTAAAATTTCAAAAATT
127 TCATACAAGCTTATTCGA-AATAAAATAATACT-AATTTATTAATATTTCAAAAATT
* * * ** ** * * *
70020 AATAAGTGAGAGAATTAAAAAATAATTCAATTTACCTAACCGATTCAAATAATTATGACTATGT-
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAATCAATTCAAATAGTTATGACTAT-TA
* * *
70084 GAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATGT-TTT-TGTT
65 GAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAA-TAAT-TATTTCTATT
* * * * * *
70147 TATATAAGTTTGTTTGAAATAAAA-AATTACTAATCTATTAATATTTCAAAAATT
128 CATACAAGCTTATTCGAAATAAAATAA-TACTAATTTATTAATATTTCAAAAATT
* * * ** * *
70201 AATAA--AA-A-TTTTAAAAAATAAATTTGTTTATCAAACT-GGTT-TAA-A-TTAAGACTATTT
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTA-CAAAATCAATTCAAATAGTTATGACTA-TT
* * * * * * *
70258 A-AGTAATTATTTATTTCAAATCATTATGACTTTTTGTTCTGTTATAAGATAA-TAGTTTCTATT
64 AGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTA-TTTCTATT
* * * * * ** *
70321 TATTCAAGCTTATTCGGATTAAAATAATACAAATTTATTAATATTTTGACAATT
128 CATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATT
* * * * * * * *
70375 AATAAGTAAAAAATGTAAAAAATTAAATATGTTTACTAAA-CTAGA-TCAAACAGTCATGATTAT
1 AATAAGTAAGAGATTTAAAAAA-TAAATCTGTTTACAAAATC-A-ATTCAAATAGTTATGACTAT
* * * * *
70438 TTGAATAGTTATCTATTTCAAATCGTTATGACCTTTTCTTCTGTCATAAAAAAATTATTT-TAAT
63 TAGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCT-AT
* * * **
70502 TCATATAAGCTTATTCAAAATAATAAAATAATA-TCAAGTTATTAATATTTTGAAAATT
127 TCATACAAGCTTATTC--GA-AATAAAATAATACT-AATTTATTAATATTTCAAAAATT
* * * *
70560 AATAATTAAGAGATTTCAAAAATGAATCTGTTTACTAAA-CAAGTTCAAATAGTTATG
1 AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAATCAA-TTCAAATAGTTATG
70617 TTAAATTAGT
Statistics
Matches: 751, Mismatches: 161, Indels: 91
0.75 0.16 0.09
Matches are distributed among these distances:
171 1 0.00
173 6 0.01
174 95 0.13
175 4 0.01
176 4 0.01
177 20 0.03
178 14 0.02
179 13 0.02
180 20 0.03
181 406 0.54
182 87 0.12
183 4 0.01
184 28 0.04
185 49 0.07
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (181 bp):
AATAAGTAAGAGATTTAAAAAATAAATCTGTTTACAAAATCAATTCAAATAGTTATGACTATTAG
AATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTATTCAT
ACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTTCAAAAATT
Found at i:70165 original size:362 final size:352
Alignment explanation
Indices: 69542--70532 Score: 951
Period size: 362 Copynumber: 2.8 Consensus size: 352
69532 TGGCCATTTC
** * ** * * * **
69542 AATAATTATCTATTTCAAATTGTTCTTGCCTTTTGTTTGGTCATATGACAATTGTTTTTGA-TCA
1 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAGACAA-TATTTTCAATTCA
* * *
69606 TACAAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATCTTTCAAAAATTAATAAGTAAGA
65 TACAAGCTTATTTAG-AATAAAATAA-AATAAATTTATTAATATTTCAAAAATTAATAAGT-AGA
* * ** * * * * *
69669 GATTTAAAAAATAAATCTGTTTACAAAATCAATTCAAATAGTTATGACTATTAGAGTAGTTGTAT
127 GAATTAAAAAATAAATCAGTTTACCTAACCGATTCAAATAGTTATGACTATT-GAATAGTTATCT
* * *
69734 ACTTAAAATTGTTATAACCTTTTGTTTTGTCATAAAATAATTATTTCTGTTCATACAAGCTTATT
191 ATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTGTTCATACAAGCTTATT
69799 TGAAATAAAATAA-AACTAATCTAATAATA-TTCTAAAAATTAATAACTAAGAGATTTAAAAAAT
256 TGAAATAAAA-AATAACTAATCTAATAATATTTC-AAAAATTAATAA--AA-A-ATTTAAAAAAT
69862 AAAATTGTTTATCAAACTAGTTCAAATAGTTAAAACTATATG
315 AAAATTGTTTATCAAACTAGTT-AAA-A-TTAAAACTAT-TG
*
69904 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATATTTTCAATTCAT
1 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAGACAATATTTTCAATTCAT
** *
69969 AGTAGCTTATTTAGAATAAAATAAAATAAATTTATTAAAATTTCAAAAATTAATAAGTGAGAGAA
66 ACAAGCTTATTTAGAATAAAATAAAATAAATTTATTAATATTTCAAAAATTAATAAGT-AGAGAA
* * * * *
70034 TTAAAAAATAATTCAATTTACCTAACCGATTCAAATAATTATGACTATGTGAACAATTATCTATT
130 TTAAAAAATAAATCAGTTTACCTAACCGATTCAAATAGTTATGACTAT-TGAATAGTTATCTATT
* * * *
70099 TCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATGT-TTT-TGTTTATATAAGTTTGTTT
194 TCAAATTGTTATGACCTTTTGTTTTGTCATAAAA-TAAT-TATTTCTGTTCATACAAGCTTATTT
* * * *
70162 GAAATAAAAAATTACTAATCTATTAATATTTCAAAAATTAATAAAAATTTTAAAAAATAAATTTG
257 GAAATAAAAAATAACTAATCTAATAATATTTCAAAAATTAATAAAAAATTTAAAAAATAAAATTG
* * * *
70227 TTTATCAAACTGGTTTAAATTAAGACTATTT
322 TTTATCAAACTAGTTAAAATTAAAACTATTG
* * * * * * * * *
70258 AAGTAATTATTTATTTCAAATCATTATGACTTTTTGTTCTGTTATAAGATAATAGTTTCTATTTA
1 AA-TAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAGACAATATTTTCAATTCA
* ** * * * ** * * *
70323 TTCAAGCTTATTCGGATTAAAATAATACAAATTTATTAATATTTTGACAATTAATAAGTAAAAAA
65 TACAAGCTTATTTAGAATAAAATAAAATAAATTTATTAATATTTCAAAAATTAATAAGTAGAGAA
* * * *
70388 TGTAAAAAATTAAAT-ATGTTTA-CTAAACTAGA-TCAAACAGTCATGATTATTTGAATAGTTAT
130 T-TAAAAAA-TAAATCA-GTTTACCT-AAC-CGATTCAAATAGTTATGACTA-TTGAATAGTTAT
* * * * * *
70450 CTATTTCAAATCGTTATGACCTTTTCTTCTGTCATAAAAAAATTATTT-TAATTCATATAAGCTT
189 CTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCT-GTTCATACAAGCTT
**
70514 ATTCAAAATAATAAAATAA
253 ATTTGAAATAA-AAAATAA
70533 TATCAAGTTA
Statistics
Matches: 520, Mismatches: 91, Indels: 41
0.80 0.14 0.06
Matches are distributed among these distances:
354 9 0.02
355 125 0.24
356 89 0.17
357 11 0.02
358 30 0.06
359 1 0.00
360 2 0.00
361 10 0.02
362 228 0.44
363 14 0.03
364 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (352 bp):
AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAGACAATATTTTCAATTCAT
ACAAGCTTATTTAGAATAAAATAAAATAAATTTATTAATATTTCAAAAATTAATAAGTAGAGAAT
TAAAAAATAAATCAGTTTACCTAACCGATTCAAATAGTTATGACTATTGAATAGTTATCTATTTC
AAATTGTTATGACCTTTTGTTTTGTCATAAAATAATTATTTCTGTTCATACAAGCTTATTTGAAA
TAAAAAATAACTAATCTAATAATATTTCAAAAATTAATAAAAAATTTAAAAAATAAAATTGTTTA
TCAAACTAGTTAAAATTAAAACTATTG
Done.