Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168448.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_66, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 135078
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.42
File 3 of 4
Found at i:70661 original size:23 final size:23
Alignment explanation
Indices: 70617--70661 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
70607 AATAGTTATG
* *
70617 TTAAATTAGTATTATAATATAAT
1 TTAAATAAGTATAATAATATAAT
70640 TTAAATAAGCTATAATAA-ATAA
1 TTAAATAAG-TATAATAATATAA
70662 CTATTTAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (23 bp):
TTAAATAAGTATAATAATATAAT
Found at i:70706 original size:22 final size:22
Alignment explanation
Indices: 70674--70717 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
70664 ATTTAATTGT
**
70674 ATATAGATTATCTATATTTATA
1 ATATAGATTATAAATATTTATA
*
70696 ATATAGTTTATAAATATTTATA
1 ATATAGATTATAAATATTTATA
70718 TTTTAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (22 bp):
ATATAGATTATAAATATTTATA
Found at i:70722 original size:17 final size:18
Alignment explanation
Indices: 70697--70730 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
70687 ATATTTATAA
70697 TATAGTTT-ATAAATATT
1 TATAGTTTAATAAATATT
*
70714 TATATTTTAATAAATAT
1 TATAGTTTAATAAATAT
70731 AAATAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TATAGTTTAATAAATATT
Found at i:70965 original size:19 final size:19
Alignment explanation
Indices: 70899--70965 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
70889 TATAGTATTA
* *
70899 ATAA-TAATTATTGATAAT
1 ATAATTAATAATTAATAAT
* *
70917 ATAATTAATAGTTTATAAAT
1 ATAATTAATAATTAAT-AAT
70937 ATAATT-ATAATTAATAAT
1 ATAATTAATAATTAATAAT
*
70955 ACAATTAATAA
1 ATAATTAATAA
70966 CATATTATTA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 12 0.30
19 19 0.47
20 9 0.22
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (19 bp):
ATAATTAATAATTAATAAT
Found at i:71473 original size:14 final size:13
Alignment explanation
Indices: 71440--71504 Score: 51
Period size: 14 Copynumber: 4.7 Consensus size: 13
71430 AAATTTAATC
*
71440 TATTAACAATTATT
1 TATTAATAATTA-T
71454 TATTAATAATTAT
1 TATTAATAATTAT
71467 TAGTTAATAAGTTAT
1 TA-TTAATAA-TTAT
* *
71482 AATAATACTAATTAT
1 --TATTAATAATTAT
71497 TA-TAATAA
1 TATTAATAA
71505 CTAATTGAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
12 5 0.12
13 5 0.12
14 18 0.42
15 8 0.19
16 5 0.12
17 2 0.05
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.46
Consensus pattern (13 bp):
TATTAATAATTAT
Found at i:71496 original size:15 final size:16
Alignment explanation
Indices: 71478--71510 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
71468 AGTTAATAAG
71478 TTATAATAAT-ACTAA
1 TTATAATAATAACTAA
*
71493 TTATTATAATAACTAA
1 TTATAATAATAACTAA
71509 TT
1 TT
71511 GAAATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATAATAATAACTAA
Found at i:71561 original size:24 final size:25
Alignment explanation
Indices: 71524--71581 Score: 77
Period size: 23 Copynumber: 2.4 Consensus size: 25
71514 ATAAATTATT
71524 TATTTAATAATAAAT-T-TACTATA
1 TATTTAATAATAAATATATACTATA
*
71547 TATTTTATAATTAAATATATACTATA
1 TATTTAATAA-TAAATATATACTATA
71573 -ATTTAATAA
1 TATTTAATAA
71582 CTATTAATTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.30
24 5 0.17
25 9 0.30
26 7 0.23
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (25 bp):
TATTTAATAATAAATATATACTATA
Found at i:71653 original size:21 final size:22
Alignment explanation
Indices: 71627--71667 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
71617 AAATTAGTAT
* *
71627 TAATTATTATTAAT-ATTTTAA
1 TAATTAATATAAATGATTTTAA
71648 TAATTAATATAAATGATTTT
1 TAATTAATATAAATGATTTT
71668 TACTTATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TAATTAATATAAATGATTTTAA
Found at i:71945 original size:20 final size:20
Alignment explanation
Indices: 71922--71963 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
71912 ATTAGTCAAA
71922 ATAATTCAATATTAATAATG
1 ATAATTCAATATTAATAATG
** *
71942 ATAATTTGATATTAATATTG
1 ATAATTCAATATTAATAATG
71962 AT
1 AT
71964 TGCTTGGATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATTCAATATTAATAATG
Found at i:72264 original size:44 final size:44
Alignment explanation
Indices: 72163--72270 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
72153 GCATATTTTG
* ** *
72163 AATAAAATAAAATTAATAAATATTTGTTATTTATTTATTTGTTA
1 AATAAATTAAAATTAATAAATATTAATTATTTATTTATTAGTTA
**
72207 AATATTTTAAAAATTAATAAATA-TAATTATTTATTTATTAGTTA
1 AATAAATT-AAAATTAATAAATATTAATTATTTATTTATTAGTTA
* *
72251 TAGTAAATTAAAATCAATAA
1 -AATAAATTAAAATTAATAA
72271 TTCATATTAA
Statistics
Matches: 52, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
44 33 0.63
45 19 0.37
ACGTcount: A:0.49, C:0.01, G:0.04, T:0.46
Consensus pattern (44 bp):
AATAAATTAAAATTAATAAATATTAATTATTTATTTATTAGTTA
Found at i:72374 original size:41 final size:38
Alignment explanation
Indices: 72316--72391 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 38
72306 CTTAATCATA
* *
72316 ATATAATTTATCTAATAATTGTGGTTTAATTAATAAAAT
1 ATATAATTTATCCAATAATTG-GGTTTAATAAATAAAAT
72355 ATATAATTATTATCCAATAATTGGGTTTAATAAATAA
1 ATATAA-T-TTATCCAATAATTGGGTTTAATAAATAA
72392 GCATATTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
39 6 0.18
40 14 0.42
41 13 0.39
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (38 bp):
ATATAATTTATCCAATAATTGGGTTTAATAAATAAAAT
Found at i:73167 original size:181 final size:179
Alignment explanation
Indices: 72887--73327 Score: 489
Period size: 181 Copynumber: 2.4 Consensus size: 179
72877 TCTGAACACA
* * * * * * *
72887 TTCAAATAGTTATAACTATTTGAACAATTATCTATTTCAAATCATTATAACCATTTGTTTTATCA
1 TTCAAATAGTTATGA-TCTTTGAACAATTATCTATTTCAAATCGTTATGA-CTTTTGTTTTGTTA
* * * *
72952 TAAACCAATTGTTTCTGTTCAAACAAGCTTATTTGGAATAAAATAATTCTAAT-TAATTAATATT
64 TAAAACAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATACTAATAT-ATTAACATT
* * ** * *
73016 C-CAAAATTAATAAGTAAAATATTTAAAAAA-TAATTTTGTTTATCG-AGTGAG
128 CTAAAAATTAATAAGTAAAAGATTTAAAAAATTAA-TTAATTTACCGAACT-AG
*
73067 TTCAAATAGTTATGATTGCTTTGAACAATTATTTATTTCAAATCGTTATGATCTTTTGTTTTGTT
1 TTCAAATAGTTATGA-T-CTTTGAACAATTATCTATTTCAAATCGTTATGA-CTTTTGTTTTGTT
* *
73132 ATAAAACAATTGTTTCTATTCATACAAGTTTATTTGGAATAAAATAATACTAATATATTAACATT
63 ATAAAACAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATACTAATATATTAACATT
**
73197 CTAAAAATTAATAAGTTGAAGATTTAAAAAATTAATTAATTTACCGAACTAG
128 CTAAAAATTAATAAGTAAAAGATTTAAAAAATTAATTAATTTACCGAACTAG
* * * * * *
73249 TTCAAATAGTAATG-TCCATTGAACTATTATCTA-TTCAAATTGTTATGACATTTTATTTTGTTG
1 TTCAAATAGTTATGAT-CTTTGAACAATTATCTATTTCAAATCGTTATGAC-TTTTGTTTTGTTA
*
73312 TAAGACAATTGTTTCT
64 TAAAACAATTGTTTCT
73328 TATCGATCAA
Statistics
Matches: 222, Mismatches: 33, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
178 1 0.00
179 40 0.18
180 30 0.14
181 97 0.44
182 49 0.22
183 5 0.02
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.42
Consensus pattern (179 bp):
TTCAAATAGTTATGATCTTTGAACAATTATCTATTTCAAATCGTTATGACTTTTGTTTTGTTATA
AAACAATTGTTTCTATTCAAACAAGCTTATTTGGAATAAAATAATACTAATATATTAACATTCTA
AAAATTAATAAGTAAAAGATTTAAAAAATTAATTAATTTACCGAACTAG
Found at i:74041 original size:21 final size:21
Alignment explanation
Indices: 74012--74053 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
74002 TTAAATCTAA
*
74012 TTTATTTATATAA-TTAAAATT
1 TTTACTTAT-TAATTTAAAATT
74033 TTTACTTATTAATTTAAAATT
1 TTTACTTATTAATTTAAAATT
74054 AAAATAATTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTACTTATTAATTTAAAATT
Found at i:74269 original size:13 final size:13
Alignment explanation
Indices: 74253--74277 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
74243 AATACAAATA
74253 AATCTAATTATTT
1 AATCTAATTATTT
74266 AATCTAATTATT
1 AATCTAATTATT
74278 AATAAAGTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (13 bp):
AATCTAATTATTT
Found at i:74640 original size:16 final size:16
Alignment explanation
Indices: 74565--74640 Score: 50
Period size: 16 Copynumber: 4.8 Consensus size: 16
74555 CAATTAAATT
74565 ATATAATAAATAATTA-
1 ATATAAT-AATAATTAC
* * *
74581 TTATAA-AATATATCAT
1 ATATAATAATA-ATTAC
* *
74597 ATACAATTATAATTAC
1 ATATAATAATAATTAC
*
74613 ATATTATAATAATTA-
1 ATATAATAATAATTAC
74628 ATATAATACATAA
1 ATATAATA-ATAA
74641 AATATTATTA
Statistics
Matches: 45, Mismatches: 11, Indels: 8
0.70 0.17 0.12
Matches are distributed among these distances:
14 4 0.09
15 10 0.22
16 28 0.62
17 3 0.07
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (16 bp):
ATATAATAATAATTAC
Found at i:74794 original size:18 final size:18
Alignment explanation
Indices: 74646--74795 Score: 58
Period size: 18 Copynumber: 8.1 Consensus size: 18
74636 CATAAAATAT
*
74646 TATTAATAATATTTAATTA
1 TATTAAT-ATATTAAATTA
* *
74665 TAATAATTTATTAAATTA
1 TATTAATATATTAAATTA
* *
74683 TTACATGATACTATATAAATTA
1 -TA-TTAATA-TAT-TAAATTA
* * *
74705 -ATTATTATAATAAATTG
1 TATTAATATATTAAATTA
* *
74722 TAATAATATTATAAATATTA
1 TATTAATA-TATTAA-ATTA
* * *
74742 -ACTAATATATGACTATTA
1 TATTAATATATTA-AATTA
74760 GT-TTAA-A-ATTAAAATTA
1 -TATTAATATATT-AAATTA
74777 TATTAATATATTAAATTA
1 TATTAATATATTAAATTA
74795 T
1 T
74796 GATAGCCAAA
Statistics
Matches: 96, Mismatches: 21, Indels: 29
0.66 0.14 0.20
Matches are distributed among these distances:
16 1 0.01
17 16 0.17
18 34 0.35
19 27 0.28
20 8 0.08
21 3 0.03
22 7 0.07
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
TATTAATATATTAAATTA
Found at i:75465 original size:24 final size:25
Alignment explanation
Indices: 75403--75466 Score: 71
Period size: 24 Copynumber: 2.7 Consensus size: 25
75393 AATAAGTAAA
75403 ATTAAT-ATTATTAATAAAAAATAT
1 ATTAATAATTATTAATAAAAAATAT
** * *
75427 ATTTGTAA-TAATAATATAAAAT-T
1 ATTAATAATTATTAATAAAAAATAT
75450 ATTAATAATTATTAATA
1 ATTAATAATTATTAATA
75467 GTTAACATTG
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
23 7 0.23
24 23 0.74
25 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.44
Consensus pattern (25 bp):
ATTAATAATTATTAATAAAAAATAT
Found at i:75811 original size:22 final size:22
Alignment explanation
Indices: 75786--75828 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
75776 CTTTTATTTA
* * *
75786 TATTCAATTAGTACTATAATAT
1 TATTAAATTAATACAATAATAT
75808 TATTAAATTAATACAATAATA
1 TATTAAATTAATACAATAATA
75829 ATTGTTTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (22 bp):
TATTAAATTAATACAATAATAT
Found at i:76240 original size:7 final size:7
Alignment explanation
Indices: 76230--76266 Score: 65
Period size: 7 Copynumber: 5.1 Consensus size: 7
76220 TAATAATTAA
76230 AAATTTT
1 AAATTTT
76237 AAATTTT
1 AAATTTT
76244 AAATTTT
1 AAATTTT
76251 AAATATTT
1 AAAT-TTT
76259 AAATTTT
1 AAATTTT
76266 A
1 A
76267 TTATTTAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 22 0.76
8 7 0.24
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AAATTTT
Found at i:76245 original size:23 final size:22
Alignment explanation
Indices: 76210--76266 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
76200 CTTATTAATT
* *
76210 TTTTTAATGTTAATAATTAAAAA
1 TTTTAAATTTTAA-AATTAAAAA
**
76233 TTTTAAATTTT-AAATTTTAAA
1 TTTTAAATTTTAAAATTAAAAA
76254 TATTTAAATTTTA
1 T-TTTAAATTTTA
76267 TTATTTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 8 0.29
22 11 0.39
23 9 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
TTTTAAATTTTAAAATTAAAAA
Found at i:76352 original size:42 final size:43
Alignment explanation
Indices: 76304--76387 Score: 104
Period size: 42 Copynumber: 2.0 Consensus size: 43
76294 AATAAGCTAT
76304 GAAATAATAATATAAT-TTATTAATT-TTG-TTAA-ATAATTATTA
1 GAAATAATAATA-AATATT-TTAATTATTGATTAATA-AATTATTA
*
76346 GAAATAATCATAAATATTTTAATTATTGATTAATAAATTATT
1 GAAATAATAATAAATATTTTAATTATTGATTAATAAATTATT
76388 GATTCAATAG
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
41 9 0.24
42 16 0.43
43 11 0.30
44 1 0.03
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.46
Consensus pattern (43 bp):
GAAATAATAATAAATATTTTAATTATTGATTAATAAATTATTA
Found at i:76384 original size:15 final size:16
Alignment explanation
Indices: 76366--76396 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
76356 TAAATATTTT
76366 AATTATTGATT-AATA
1 AATTATTGATTCAATA
76381 AATTATTGATTCAATA
1 AATTATTGATTCAATA
76397 GAGTATTCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.06, T:0.45
Consensus pattern (16 bp):
AATTATTGATTCAATA
Found at i:76437 original size:16 final size:15
Alignment explanation
Indices: 76408--76448 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 15
76398 AGTATTCACA
76408 TATACATTTAATTAT
1 TATACATTTAATTAT
*
76423 TATACTATTTGATTAT
1 TATAC-ATTTAATTAT
*
76439 TATAAATTTA
1 TATACATTTA
76449 TTAAAATATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 9 0.41
16 13 0.59
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (15 bp):
TATACATTTAATTAT
Found at i:76527 original size:23 final size:22
Alignment explanation
Indices: 76501--76563 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
76491 AATTTGTGTT
*
76501 ATTATAAATTAAT-ATTATACTTA
1 ATTATAAATAAATAATT-TA-TTA
76524 ATTATAAATAAATAATTTATTA
1 ATTATAAATAAATAATTTATTA
*
76546 ATTAT-ATTAAAT-ATTTAT
1 ATTATAAATAAATAATTTAT
76564 AATGAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
20 6 0.16
21 6 0.16
22 8 0.22
23 14 0.38
24 3 0.08
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTATAAATAAATAATTTATTA
Found at i:76808 original size:19 final size:19
Alignment explanation
Indices: 76772--76811 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
76762 CTAATTTATT
* * *
76772 AAATTATTTTGTTTAATTA
1 AAATTATTATATTAAATTA
76791 AAATTATTATATTAAATTA
1 AAATTATTATATTAAATTA
76810 AA
1 AA
76812 TATAATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
AAATTATTATATTAAATTA
Found at i:76823 original size:19 final size:19
Alignment explanation
Indices: 76786--76823 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
76776 TATTTTGTTT
*
76786 AATTAAAATTATTATATTA
1 AATTAAAATAATTATATTA
76805 AATTAAATATAATTA-ATTA
1 AATTAAA-ATAATTATATTA
76824 TATATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
AATTAAAATAATTATATTA
Found at i:77086 original size:21 final size:22
Alignment explanation
Indices: 77044--77092 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
77034 TTTTAAATAG
*
77044 ATAATTATTCAAATAGTCATAAT
1 ATAATTATT-AAATAATCATAAT
*
77067 ATAATTATT-AATAATTATAAT
1 ATAATTATTAAATAATCATAAT
77088 ATAAT
1 ATAAT
77093 AAATAATACT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 15 0.62
23 9 0.38
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (22 bp):
ATAATTATTAAATAATCATAAT
Found at i:77320 original size:30 final size:28
Alignment explanation
Indices: 77286--77353 Score: 66
Period size: 30 Copynumber: 2.3 Consensus size: 28
77276 TATTATATAA
77286 TATTAATTAAAGATAATCATTATTAGTAAT
1 TATTAATTAAAGATAAT-ATTATTAGT-AT
**
77316 TATTAGGA-TAATTATAATATTATTAGTAT
1 TATTA--ATTAAAGATAATATTATTAGTAT
*
77345 TATAAATTA
1 TATTAATTA
77354 TTAAAATAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
27 1 0.03
28 2 0.06
29 6 0.19
30 14 0.44
31 8 0.25
32 1 0.03
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.46
Consensus pattern (28 bp):
TATTAATTAAAGATAATATTATTAGTAT
Found at i:77923 original size:21 final size:22
Alignment explanation
Indices: 77879--77924 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
77869 AAATTGATTA
*
77879 TTAAAATTAAATAAAATAATAT
1 TTAAAATTAAATAAAATAAGAT
* *
77901 TTAAAA-TAAATACAATTAGAT
1 TTAAAATTAAATAAAATAAGAT
77922 TTA
1 TTA
77925 GAACTAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (22 bp):
TTAAAATTAAATAAAATAAGAT
Found at i:79255 original size:25 final size:26
Alignment explanation
Indices: 79218--79268 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
79208 ATAATAATAT
79218 AATAATAAATTAATT-ATTATTAATTA
1 AATAATAAATTAATTGA-TATTAATTA
*
79244 AATAAT-AGTTAATTGATATTAATTA
1 AATAATAAATTAATTGATATTAATTA
79269 TATCATATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (26 bp):
AATAATAAATTAATTGATATTAATTA
Found at i:79366 original size:21 final size:22
Alignment explanation
Indices: 79341--79382 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
79331 ACTAATCAAA
79341 TTATT-ATAATATTAAT-TTTAC
1 TTATTAATAA-ATTAATATTTAC
79362 TTATTAATAAATTAATATTTA
1 TTATTAATAAATTAATATTTA
79383 TACTATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (22 bp):
TTATTAATAAATTAATATTTAC
Found at i:79476 original size:27 final size:26
Alignment explanation
Indices: 79444--79546 Score: 82
Period size: 27 Copynumber: 3.7 Consensus size: 26
79434 CTATATAAAA
*
79444 TAAATTATTATTAATTATAATGGTTAT
1 TAAATT-TTATTAATTATAATGATTAT
* * *
79471 TAAATTTTATAAAATTATTATATAATATAA
1 TAAATTTTAT-TAATTA-TA-ATGAT-TAT
*
79501 TAAATTTTAATTAATTATAATGATAAT
1 TAAATTTT-ATTAATTATAATGATTAT
79528 TAAAATTATTA-TAATTATA
1 T-AAATT-TTATTAATTATA
79547 TTTAATTAAA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
26 4 0.07
27 21 0.34
28 12 0.20
29 7 0.11
30 15 0.25
31 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (26 bp):
TAAATTTTATTAATTATAATGATTAT
Found at i:79521 original size:6 final size:6
Alignment explanation
Indices: 79512--79598 Score: 61
Period size: 6 Copynumber: 16.2 Consensus size: 6
79502 AAATTTTAAT
* *
79512 TAATTA TAATGA TAATTA -AA--A TTATTA TAATTA T-ATT- TAATTA
1 TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA
*
79555 -AATTA -AATTTT TAA-TA TAA-T- TAATTA T-ATTA TAATTA TAATTA
1 TAATTA TAA-TTA TAATTA TAATTA TAATTA TAATTA TAATTA TAATTA
79598 T
1 T
79599 TATATAAAAT
Statistics
Matches: 65, Mismatches: 6, Indels: 20
0.71 0.07 0.22
Matches are distributed among these distances:
3 1 0.02
4 5 0.08
5 26 0.40
6 31 0.48
7 2 0.03
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
TAATTA
Found at i:79541 original size:21 final size:22
Alignment explanation
Indices: 79509--79551 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
79499 AATAAATTTT
79509 AATTAATTATAATGATAATTAA
1 AATTAATTATAATGATAATTAA
* *
79531 AATT-ATTATAATTATATTTAA
1 AATTAATTATAATGATAATTAA
79552 TTAAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
AATTAATTATAATGATAATTAA
Found at i:79543 original size:15 final size:15
Alignment explanation
Indices: 79523--79602 Score: 67
Period size: 15 Copynumber: 5.2 Consensus size: 15
79513 AATTATAATG
*
79523 ATAATTAAAATTATT
1 ATAATTAAATTTATT
*
79538 ATAATTATATTTAATT
1 ATAATTAAATTT-ATT
*
79554 A-AATTAAATTTTTAAT
1 ATAATTAAA--TTTATT
79570 ATAATT-AATTATATT
1 ATAATTAAATT-TATT
79585 ATAATTATAA-TTATT
1 ATAATTA-AATTTATT
79600 ATA
1 ATA
79603 TAAAATATTA
Statistics
Matches: 53, Mismatches: 5, Indels: 14
0.74 0.07 0.19
Matches are distributed among these distances:
14 2 0.04
15 32 0.60
16 10 0.19
17 9 0.17
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATAATTAAATTTATT
Found at i:79544 original size:57 final size:56
Alignment explanation
Indices: 79441--79602 Score: 152
Period size: 57 Copynumber: 2.8 Consensus size: 56
79431 CAACTATATA
* *
79441 AAATAAATTATT-ATTAATTATAATGGTTATT-AAATT-TTATAAAATTATTATATAA-T
1 AAATAAATT-TTAATTAATTATAATGATAATTAAAATTATTAT--AATTA-TATATAATT
*
79497 ATAATAAATTTTAATTAATTATAATGATAATTAAAATTATTATAATTATATTTAATT
1 A-AATAAATTTTAATTAATTATAATGATAATTAAAATTATTATAATTATATATAATT
* *
79554 AAATTAAATTTTTAATATAATTAATTATATTATAATTATAATTATTATA
1 AAA-TAAA-TTTTAAT-TAATT-A-TA-ATGATAATTAAAATTATTATA
79603 TAAAATATTA
Statistics
Matches: 90, Mismatches: 5, Indels: 16
0.81 0.05 0.14
Matches are distributed among these distances:
56 11 0.12
57 36 0.40
58 12 0.13
59 9 0.10
60 1 0.01
61 2 0.02
62 19 0.21
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (56 bp):
AAATAAATTTTAATTAATTATAATGATAATTAAAATTATTATAATTATATATAATT
Found at i:79559 original size:21 final size:21
Alignment explanation
Indices: 79506--79598 Score: 53
Period size: 21 Copynumber: 4.7 Consensus size: 21
79496 TATAATAAAT
*
79506 TTTAATT-AATTATAATGATA
1 TTTAATTAAATTATAATTATA
*
79526 ATTAA--AATTATTATAATTATA
1 TTTAATTAA--ATTATAATTATA
79547 TTTAATTAAATTA-AA-T-T-
1 TTTAATTAAATTATAATTATA
79564 TTTAA-TATAA-T-TAATTATA
1 TTTAATTA-AATTATAATTATA
79583 TTATAATTATAATTAT
1 TT-TAATTA-AATTAT
79599 TATATAAAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 25
0.67 0.04 0.30
Matches are distributed among these distances:
16 5 0.09
17 8 0.14
18 2 0.04
19 4 0.07
20 9 0.16
21 24 0.43
22 1 0.02
23 3 0.05
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (21 bp):
TTTAATTAAATTATAATTATA
Found at i:79575 original size:32 final size:32
Alignment explanation
Indices: 79508--79922 Score: 134
Period size: 32 Copynumber: 13.3 Consensus size: 32
79498 TAATAAATTT
* *
79508 TAATTAATTATAATGATAATTAAAATTA-T-TA
1 TAATTAATTAT-ATTATAATTATAATTATTATA
*
79539 TAATTATATT-TAATTA-AATTA-AATTTTTAATA
1 TAATTA-ATTAT-ATTATAATTATAATTATT-ATA
79571 TAATTAATTATATTATAATTATAATTATTATA
1 TAATTAATTATATTATAATTATAATTATTATA
* * *
79603 TAA-AATATTA-ATTTATAATCAT-ATTA-TATG
1 TAATTA-ATTATA-TTATAATTATAATTATTATA
*
79633 TTATTAGATTATATTATATATTATTTTAATATATT-T-
1 TAATTA-ATTATATTATA-ATTA---TAAT-TATTATA
* *
79669 TAA-TAATTTTA-TATAACT-TAA-TA-TATA
1 TAATTAATTATATTATAATTATAATTATTATA
*
79696 TAAATAATTA-A-TATAA-TATAATATATTAAATA
1 TAATTAATTATATTATAATTATAAT-TATT--ATA
79728 TAATATAA-TATATTATAA-TATAATTA--ATA
1 TAAT-TAATTATATTATAATTATAATTATTATA
79757 TAATT-ATTACTAATT-TAAATTA-AATGTATT-TGA
1 TAATTAATTA-T-ATTAT-AATTATAAT-TATTAT-A
* *
79790 TAATT-A-TAT-TTATAA-TA-ATTTATAATA
1 TAATTAATTATATTATAATTATAATTATTATA
* * * *
79817 TAAATAATTA-ATTTTAAATAT-ATTTTTAATA
1 TAATTAATTATATTATAATTATAATTATT-ATA
*
79848 TTAATTAATTAT-TAATAATTATAA-TATTAT-
1 -TAATTAATTATATTATAATTATAATTATTATA
* * *
79878 TATATTATTATATATTTTAATAATAA-TATTATTTA
1 TA-ATTAAT-TATATTATAATTATAATTATTA--TA
79913 TAATT-ATTAT
1 TAATTAATTAT
79923 TAATATATAA
Statistics
Matches: 296, Mismatches: 32, Indels: 111
0.67 0.07 0.25
Matches are distributed among these distances:
25 1 0.00
26 4 0.01
27 21 0.07
28 17 0.06
29 28 0.09
30 31 0.10
31 47 0.16
32 89 0.30
33 25 0.08
34 20 0.07
35 5 0.02
36 4 0.01
37 3 0.01
38 1 0.00
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (32 bp):
TAATTAATTATATTATAATTATAATTATTATA
Found at i:79702 original size:18 final size:18
Alignment explanation
Indices: 79681--79776 Score: 81
Period size: 19 Copynumber: 5.1 Consensus size: 18
79671 ATAATTTTAT
79681 ATAACTTAATAT-ATATAA
1 ATAA-TTAATATAATATAA
79699 ATAATTAATATAATAT-A
1 ATAATTAATATAATATAA
79716 ATATATTAAATATAATATAA
1 ATA-ATT-AATATAATATAA
*
79736 TATATTATAATATAAT-TAA
1 -ATAAT-TAATATAATATAA
* *
79755 TATAATTATTACTAATTTAA
1 -ATAATTAATA-TAATATAA
79775 AT
1 AT
79777 TAAATGTATT
Statistics
Matches: 67, Mismatches: 3, Indels: 15
0.79 0.04 0.18
Matches are distributed among these distances:
17 11 0.16
18 15 0.22
19 24 0.36
20 13 0.19
21 4 0.06
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAATTAATATAATATAA
Found at i:79714 original size:5 final size:5
Alignment explanation
Indices: 79687--79760 Score: 95
Period size: 5 Copynumber: 15.8 Consensus size: 5
79677 TTATATAACT
*
79687 TAATA T-ATA TAA-A TAAT- TAATA TAATA TAATA TATTA -AATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
*
79733 TAATA TATTA TAATA TAAT- TAATA TAAT
1 TAATA TAATA TAATA TAATA TAATA TAAT
79761 TATTACTAAT
Statistics
Matches: 60, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
4 19 0.32
5 41 0.68
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (5 bp):
TAATA
Found at i:79729 original size:19 final size:19
Alignment explanation
Indices: 79688--79758 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
79678 TATATAACTT
79688 AATAT-ATATAA-ATAATT-
1 AATATAATATAATAT-ATTA
79705 AATATAATATAATATATTA
1 AATATAATATAATATATTA
79724 AATATAATATAATATATTA
1 AATATAATATAATATATTA
79743 TAATATAAT-TAATATA
1 -AATATAATATAATATA
79759 ATTATTACTA
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.10
18 9 0.18
19 28 0.56
20 8 0.16
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AATATAATATAATATATTA
Found at i:79736 original size:29 final size:28
Alignment explanation
Indices: 79679--79762 Score: 95
Period size: 29 Copynumber: 3.0 Consensus size: 28
79669 TAATAATTTT
79679 ATATAACT-TAATATA-TATAA-ATAATTA
1 ATATAA-TATAATATATTA-AATATAATTA
79706 ATATAATATAATATATTAAATATAATATA
1 ATATAATATAATATATTAAATATAAT-TA
*
79735 ATATATTATAATATAATT-AATATAATTA
1 ATATAATATAATAT-ATTAAATATAATTA
79763 TTACTAATTT
Statistics
Matches: 51, Mismatches: 1, Indels: 9
0.84 0.02 0.15
Matches are distributed among these distances:
26 1 0.02
27 15 0.29
28 9 0.18
29 23 0.45
30 3 0.06
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.43
Consensus pattern (28 bp):
ATATAATATAATATATTAAATATAATTA
Found at i:79770 original size:24 final size:24
Alignment explanation
Indices: 79687--79937 Score: 106
Period size: 24 Copynumber: 10.4 Consensus size: 24
79677 TTATATAACT
79687 TAATATA-TATAA-ATAATTAATA
1 TAATATATTATAATATAATTAATA
* *
79709 TAATATAATATATTA-AATATAATA
1 TAATATATTATAATATAAT-TAATA
79733 TAATATATTATAATATAATTAATA
1 TAATATATTATAATATAATTAATA
*
79757 TAAT-TATTACTAATTTAAATTAA-A
1 TAATATATTA-TAATAT-AATTAATA
*
79781 T-GTAT-TTGATAAT-TATATT--TA
1 TAATATATT-ATAATATA-ATTAATA
*
79802 TAATA-ATTTATAATATAAATAAT-
1 TAATATA-TTATAATATAATTAATA
*
79825 TAAT-T-TTA-AATATATTTTTAATA
1 TAATATATTATAATATA--ATTAATA
*
79848 TTAAT-TAATTATTAATA-ATTATAATA
1 -TAATAT-ATTA-TAATATAAT-TAATA
* * *
79874 TTATTATATTATTATATATTTTAATAA
1 -TAATATATTATAATATA-ATTAAT-A
*
79901 TAATATTATTTATAATTATTATTAATA
1 TAATA-TA-TTATAA-TATAATTAATA
79928 T-ATAATATTA
1 TAAT-ATATTA
79938 ATATAGTTAT
Statistics
Matches: 180, Mismatches: 15, Indels: 65
0.69 0.06 0.25
Matches are distributed among these distances:
20 6 0.03
21 6 0.03
22 24 0.13
23 27 0.15
24 43 0.24
25 18 0.10
26 29 0.16
27 10 0.06
28 14 0.08
29 3 0.02
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (24 bp):
TAATATATTATAATATAATTAATA
Found at i:79851 original size:18 final size:18
Alignment explanation
Indices: 79824--79921 Score: 53
Period size: 18 Copynumber: 5.5 Consensus size: 18
79814 ATATAAATAA
*
79824 TTAATTTTAAATATATTT
1 TTAATATTAAATATATTT
* *
79842 TTAATATTAATTA-ATTA
1 TTAATATTAAATATATTT
* *
79859 TTAATAATTATA-ATATTA
1 TTAAT-ATTAAATATATTT
*
79877 TT-ATATT-ATTATATATT
1 TTAATATTAAATATAT-TT
*
79894 TTAATAAT-AATATTATTT
1 TTAATATTAAATA-TATTT
*
79912 ATAATTATTA
1 TTAA-TATTA
79922 TTAATATATA
Statistics
Matches: 60, Mismatches: 12, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
16 7 0.12
17 14 0.23
18 33 0.55
19 6 0.10
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TTAATATTAAATATATTT
Found at i:79884 original size:26 final size:27
Alignment explanation
Indices: 79843--79940 Score: 86
Period size: 26 Copynumber: 3.9 Consensus size: 27
79833 AATATATTTT
79843 TAATATTAATTA-ATTATTAATAATTA
1 TAATATTAATTATATTATTAATAATTA
79869 TAATATT-ATTATATTATT-ATATATT-
1 TAATATTAATTATATTATTAATA-ATTA
* * *
79894 T--TAATAATAATATTATTTATAATTA
1 TAATATTAATTATATTATTAATAATTA
*
79919 T--TATTAATATATAATATTAATA
1 TAATATTAAT-TATATTATTAATA
79941 TAGTTATTAA
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
23 3 0.05
24 13 0.22
25 18 0.30
26 26 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TAATATTAATTATATTATTAATAATTA
Found at i:79936 original size:53 final size:53
Alignment explanation
Indices: 79825--79974 Score: 127
Period size: 53 Copynumber: 2.9 Consensus size: 53
79815 TATAAATAAT
* *
79825 TAATTTTAA-ATATATTTTTAATATTAATTAATTATTAATAATTATAATATTA
1 TAATATTAATATATATTTTTAATAATAATTAATTATTAATAATTATAATATTA
* * * *
79877 TTATATTATTATATA-TTTTAATAATAA-T-ATTATTTATAATTATTATTAATATA
1 TAATATTAATATATATTTTTAATAATAATTAATTATTAATAATTA-TAAT-AT-TA
* *
79930 TAATATTAATATA-GTTATTAATAA-AACTTAA--ATTAATAAATTATA
1 TAATATTAATATATATTTTTAATAATAA-TTAATTATTAAT-AATTATA
79975 TAATAATTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
50 13 0.17
51 4 0.05
52 21 0.27
53 33 0.42
54 6 0.08
55 1 0.01
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.51
Consensus pattern (53 bp):
TAATATTAATATATATTTTTAATAATAATTAATTATTAATAATTATAATATTA
Found at i:80006 original size:28 final size:28
Alignment explanation
Indices: 79975--80068 Score: 95
Period size: 28 Copynumber: 3.3 Consensus size: 28
79965 ATAAATTATA
79975 TAATAATTTATTATTATATTAAAATAAT
1 TAATAATTTATTATTATATTAAAATAAT
*
80003 TAATAATTGTATATAATATATTAGTAAATAAT
1 TAATAATT-TAT-TATTATATTA--AAATAAT
* *
80035 T-AT-ATACTATTATT-TATTTAAATAAT
1 TAATAAT-TTATTATTATATTAAAATAAT
80061 TAATAATT
1 TAATAATT
80069 GAGTAAACTA
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
26 8 0.15
27 2 0.04
28 14 0.26
29 6 0.11
30 14 0.26
31 2 0.04
32 8 0.15
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (28 bp):
TAATAATTTATTATTATATTAAAATAAT
Found at i:80357 original size:21 final size:20
Alignment explanation
Indices: 80319--80357 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
80309 TAGATTAATT
**
80319 AATAAAATTAATCTATTAAG
1 AATAAAATTAATAAATTAAG
80339 AATAATAATTAATAAATTA
1 AATAA-AATTAATAAATTA
80358 TTAATAGATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (20 bp):
AATAAAATTAATAAATTAAG
Found at i:80363 original size:21 final size:20
Alignment explanation
Indices: 80316--80378 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
80306 AATTAGATTA
**
80316 ATTAATAAAATTAATCTATT
1 ATTAATAAAATTAATAAATT
**
80336 AAGAATAATAATTAATAAATT
1 ATTAATAA-AATTAATAAATT
*
80357 ATTAAT-AGATTAGATAAATT
1 ATTAATAAAATTA-ATAAATT
80377 AT
1 AT
80379 ATACATTATG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
19 4 0.12
20 16 0.47
21 14 0.41
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.40
Consensus pattern (20 bp):
ATTAATAAAATTAATAAATT
Found at i:80375 original size:20 final size:18
Alignment explanation
Indices: 80341--80378 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
80331 CTATTAAGAA
80341 TAATAATTAATAAATTAT
1 TAATAATTAATAAATTAT
80359 TAATAGATTAGATAAATTAT
1 TAATA-ATTA-ATAAATTAT
80379 ATACATTATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 4 0.22
20 9 0.50
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (18 bp):
TAATAATTAATAAATTAT
Found at i:81071 original size:181 final size:181
Alignment explanation
Indices: 80865--81485 Score: 522
Period size: 181 Copynumber: 3.4 Consensus size: 181
80855 AATTATTATA
* * * **
80865 AAACAATTATTTTATGACAAAACAAAAGATCATAACAATTTGAAATAGATAATTATTCTAATGGA
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACTATTTGAAATAGATAATTATTCAAACAGA
* * ** *
80930 CATGACTATTTGAATTTGTTTGGTAAACAGACTTATTTTTTAAATCTCCTACCTATTAATT-TAC
66 CATAACTATTTGAACTTACTCGGTAAACAGACTTATTTTTTAAATCTCCTACCTATTAATTGT-C
*
80994 AAAATATTAATAAAGTAGTATTATTTTATTTTGAATAAACTTGA-AT-GAATAG
130 AAAATATTAATAAAGTAGTATTATTTTATTTTGAATAAACTT-ATATAG-ACAG
* * * *
81046 AAACAATTGTTTTATGACAAAACAAAAGATCATAACTATTAGAAATAAAAAATTATTCAAACAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACTATTTGAAATAGATAATTATTCAAACAGA
* * * ** * **
81111 TATAACTATTTGAGCTTACTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTTG
66 CATAACTATTTGAACTTACTCGGTAAACAGACTTATTTTTTAAATCTCCTACCTATTAATTGTCA
* * * *
81176 GAATATTATTAAATTAGTATTATTTTATTTTGAATAAGCTTATATAGACAG
131 AAATATTAATAAAGTAGTATTATTTTATTTTGAATAAACTTATATAGACAG
* * * * * * * *
81227 AAAAAATTGGTTCATCACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATAGT
1 AAACAATTGTTTTATGACAAAACAAAAGATCATAACTATTTGAAATAGATAATTATTCAAACAGA
* * * * ** * * * * ** * *
81292 TAGATCTATTTGAACATGTTC--AAAAAAAATTTATTTTTTAAAT-TTTTACTTATTAAATT-TT
66 CATAACTATTTGAACTTACTCGGTAAACAGACTTATTTTTTAAATCTCCTACCTATT-AATTGTC
** * ** * * *
81353 GGAATATTAATAAA-T-TTAATTATTTTATTCGGAATAAGCTTGTATGGACAG
130 AAAATATTAATAAAGTAGT-ATTATTTTATTTTGAATAAACTTATATAGACAG
* * * * * *
81404 AAAACAATTGGTTTATCACAAAACAAAAGGTCATAACTATTTGAAATAAAATAATTGTTCAAATA
1 -AAACAATTGTTTTATGACAAAACAAAAGATCATAACTATTTGAAAT-AGATAATTATTCAAACA
* * *
81469 GTCAGAACTATTCGAAC
64 GACATAACTATTTGAAC
81486 ATGTTCAAAA
Statistics
Matches: 375, Mismatches: 58, Indels: 16
0.84 0.13 0.04
Matches are distributed among these distances:
176 1 0.00
177 30 0.08
178 70 0.19
179 53 0.14
180 1 0.00
181 218 0.58
182 2 0.01
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.38
Consensus pattern (181 bp):
AAACAATTGTTTTATGACAAAACAAAAGATCATAACTATTTGAAATAGATAATTATTCAAACAGA
CATAACTATTTGAACTTACTCGGTAAACAGACTTATTTTTTAAATCTCCTACCTATTAATTGTCA
AAATATTAATAAAGTAGTATTATTTTATTTTGAATAAACTTATATAGACAG
Found at i:81415 original size:178 final size:179
Alignment explanation
Indices: 80996--81497 Score: 636
Period size: 181 Copynumber: 2.8 Consensus size: 179
80986 TAATTTACAA
* * * * * *
80996 AATATTAATAAAGTAGTATTATTTTATTTTGAATAAACTTGAATGAATAG-AAACAATTGTTTTA
1 AATATTAATAAATTAG-ATTATTTTATTTTGAATAAGCTTGTATGGACAGAAAACAATTGGTTTA
* * * * * * * *
81060 TGACAAAACAAAAGATCATAACTATTAGAAATAAAAAATTATTCAAACAGTTATAACTATTTGAG
65 TCACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTTAGAACTATTTGAA
* ** * * *
81125 CTTACTCGGTAAACAGATTTATTTTTTAAATCTTTTACTTATTAATTGTTGG
130 CATGTTC--AAAAAAAATTTATTTTTTAAATCTTTTACTTATTAATTGTTGG
* * * *
81177 AATATTATTAAATTAGTATTATTTTATTTTGAATAAGCTTATATAGACAGAAAA-AATTGGTTCA
1 AATATTAATAAATTAG-ATTATTTTATTTTGAATAAGCTTGTATGGACAGAAAACAATTGGTTTA
* *
81241 TCACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATAGTTAGATCTATTTGAA
65 TCACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTTAGAACTATTTGAA
81306 CATGTTCAAAAAAAATTTATTTTTTAAAT-TTTTACTTATTAAATT-TTGG
130 CATGTTCAAAAAAAATTTATTTTTTAAATCTTTTACTTATT-AATTGTTGG
**
81355 AATATTAATAAATTTA-ATTATTTTATTCGGAATAAGCTTGTATGGACAGAAAACAATTGGTTTA
1 AATATTAATAAA-TTAGATTATTTTATTTTGAATAAGCTTGTATGGACAGAAAACAATTGGTTTA
* *
81419 TCACAAAACAAAAGGTCATAACTATTTGAAATAAAATAATTGTTCAAATAGTCAGAACTATTCGA
65 TCACAAAACAAAAGGTCATAACTATTTGAAAT-AAATAATTGTTCAAATAGTTAGAACTATTTGA
81484 ACATGTTCAAAAAA
129 ACATGTTCAAAAAA
81498 CTAATTGTAT
Statistics
Matches: 280, Mismatches: 36, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
177 33 0.12
178 67 0.24
179 68 0.24
181 109 0.39
182 3 0.01
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.38
Consensus pattern (179 bp):
AATATTAATAAATTAGATTATTTTATTTTGAATAAGCTTGTATGGACAGAAAACAATTGGTTTAT
CACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATAGTTAGAACTATTTGAAC
ATGTTCAAAAAAAATTTATTTTTTAAATCTTTTACTTATTAATTGTTGG
Found at i:81617 original size:10 final size:12
Alignment explanation
Indices: 81567--81613 Score: 58
Period size: 13 Copynumber: 3.8 Consensus size: 12
81557 CACTTTATAA
81567 ATAATAAATATT
1 ATAATAAATATT
**
81579 AGTTTTAAATATT
1 A-TAATAAATATT
81592 ATAATAAATATTT
1 ATAATAAATA-TT
81605 ATAATAAAT
1 ATAATAAAT
81614 TATATACAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
12 8 0.28
13 21 0.72
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (12 bp):
ATAATAAATATT
Found at i:82521 original size:23 final size:23
Alignment explanation
Indices: 82495--82554 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 23
82485 ATAAATAATT
82495 ATTATAATTAATTTA-ACTAATAA
1 ATTATAATTAATTTATACT-ATAA
*
82518 ATTAGATATT-A-TTATACTATAA
1 ATTATA-ATTAATTTATACTATAA
*
82540 ATTCTAATCTAATTT
1 ATTATAAT-TAATTT
82555 TAAGTTAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 9
0.71 0.07 0.22
Matches are distributed among these distances:
21 2 0.07
22 12 0.41
23 10 0.34
24 5 0.17
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTATAATTAATTTATACTATAA
Found at i:83002 original size:12 final size:12
Alignment explanation
Indices: 82987--83028 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
82977 TAATTATTAA
*
82987 ATAATAAATAAT
1 ATAATAAATATT
82999 ATAATAAATATT
1 ATAATAAATATT
*
83011 AT-ATAATTATT
1 ATAATAAATATT
83022 ATAATAA
1 ATAATAA
83029 TCATAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAATAAATATT
Found at i:83126 original size:24 final size:25
Alignment explanation
Indices: 83099--83152 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
83089 AATAAATTAC
*
83099 TTATTTAT-TTTATCAA-TAATATTG
1 TTATTTATACTTAT-AATTAATATTG
*
83123 TTATTGATACTTATAATTAATATTG
1 TTATTTATACTTATAATTAATATTG
83148 -TATTT
1 TTATTT
83153 TAATAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.33, C:0.04, G:0.06, T:0.57
Consensus pattern (25 bp):
TTATTTATACTTATAATTAATATTG
Found at i:83175 original size:14 final size:13
Alignment explanation
Indices: 83156--83221 Score: 62
Period size: 14 Copynumber: 4.8 Consensus size: 13
83146 TGTATTTTAA
83156 TAATTATTATAACT
1 TAATTATTATAA-T
83170 TAATTAGGTTATAAT
1 TAATTA--TTATAAT
* *
83185 T-ATTAATATATT
1 TAATTATTATAAT
*
83197 TAATTATAATTAAT
1 TAATTATTA-TAAT
83211 TAATTATTATA
1 TAATTATTATA
83222 TCTGATAATA
Statistics
Matches: 42, Mismatches: 6, Indels: 9
0.74 0.11 0.16
Matches are distributed among these distances:
12 6 0.14
13 7 0.17
14 21 0.50
15 2 0.05
16 6 0.14
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (13 bp):
TAATTATTATAAT
Found at i:83242 original size:10 final size:10
Alignment explanation
Indices: 83180--83260 Score: 55
Period size: 10 Copynumber: 8.1 Consensus size: 10
83170 TAATTAGGTT
83180 ATAATTATTA
1 ATAATTATTA
83190 AT-A-TATTTA
1 ATAATTA-TTA
* *
83199 ATTATAATTA
1 ATAATTATTA
83209 ATTAATTATT-
1 A-TAATTATTA
83219 AT-ATCTGA-TA
1 ATAAT-T-ATTA
83229 ATAATTATTA
1 ATAATTATTA
*
83239 ATAACTATTA
1 ATAATTATTA
83249 ATAAATTATTA
1 AT-AATTATTA
83260 A
1 A
83261 AATAAAGGGT
Statistics
Matches: 56, Mismatches: 5, Indels: 19
0.70 0.06 0.24
Matches are distributed among these distances:
8 4 0.07
9 10 0.18
10 25 0.45
11 17 0.30
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.48
Consensus pattern (10 bp):
ATAATTATTA
Found at i:83376 original size:21 final size:21
Alignment explanation
Indices: 83332--83394 Score: 62
Period size: 21 Copynumber: 3.1 Consensus size: 21
83322 TATATAATTA
* *
83332 TAAATAGTTATAATTAA-ATGT
1 TAAATATTTATAATTAATA-AT
83353 TAAATATTTATAATTAATAAT
1 TAAATATTTATAATTAATAAT
*
83374 T-AAT-TTTTTAATTAAT-AT
1 TAAATATTTATAATTAATAAT
83392 TAA
1 TAA
83395 TTGAATAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.08
19 12 0.32
20 3 0.08
21 18 0.49
22 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (21 bp):
TAAATATTTATAATTAATAAT
Found at i:83573 original size:20 final size:19
Alignment explanation
Indices: 83550--83604 Score: 60
Period size: 21 Copynumber: 2.8 Consensus size: 19
83540 TAATATTATT
*
83550 ATAATTATTATAATATTTGG
1 ATAATTATTATAATAATT-G
83570 ATAATTTATTCAT-ATAATTG
1 ATAA-TTATT-ATAATAATTG
83590 ATAATTATTA-AATAA
1 ATAATTATTATAATAA
83605 CTAATATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.16
19 5 0.16
20 9 0.29
21 10 0.32
22 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (19 bp):
ATAATTATTATAATAATTG
Found at i:83822 original size:15 final size:15
Alignment explanation
Indices: 83802--83849 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
83792 CTAAGATAAT
83802 TAATAATATTAATTA
1 TAATAATATTAATTA
*
83817 TAATAATAATTAAATA
1 TAATAAT-ATTAATTA
*
83833 -AATTATATT-ATTA
1 TAATAATATTAATTA
83846 TAAT
1 TAAT
83850 TTGTATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 3 0.11
14 6 0.21
15 12 0.43
16 7 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATAATATTAATTA
Found at i:83832 original size:26 final size:25
Alignment explanation
Indices: 83797--83849 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
83787 GAAATCTAAG
83797 ATAATTAATAATATTA-ATTATAATA
1 ATAATTAATAA-ATTATATTATAATA
*
83822 ATAATTAAATAAATTATATTATTATA
1 ATAATT-AATAAATTATATTATAATA
83848 AT
1 AT
83850 TTGTATATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
ATAATTAATAAATTATATTATAATA
Found at i:83986 original size:6 final size:6
Alignment explanation
Indices: 83924--84004 Score: 51
Period size: 6 Copynumber: 13.5 Consensus size: 6
83914 AATTAGTATT
* * * * *
83924 ATTATA TTTATA ATTTTA GTTAT- ATTA-A ATAATA AGTATA A-TATA
1 ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA ATTATA
* *
83969 ATTAATTA ATTATA ATTATT ATTATA TATAATA ATT
1 ATT-A-TA ATTATA ATTATA ATTATA -ATTATA ATT
84005 TGTTGTAAAT
Statistics
Matches: 56, Mismatches: 13, Indels: 12
0.69 0.16 0.15
Matches are distributed among these distances:
5 11 0.20
6 33 0.59
7 7 0.12
8 5 0.09
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (6 bp):
ATTATA
Found at i:84800 original size:15 final size:14
Alignment explanation
Indices: 84770--84897 Score: 69
Period size: 12 Copynumber: 9.4 Consensus size: 14
84760 ATTATTTACT
84770 TTAATAATTT-ATA
1 TTAATAATTTAATA
84783 -TAAT--TTTAATA
1 TTAATAATTTAATA
*
84794 TTAATAAAATTAATA
1 TTAAT-AATTTAATA
84809 TTTAATTAATTTTAATA
1 -TTAA-TAA-TTTAATA
* *
84826 -TAATTATATAATA
1 TTAATAATTTAATA
* *
84839 TT-ATAA-GTATTA
1 TTAATAATTTAATA
*
84851 TTAATAGTTATAAT-
1 TTAATAATT-TAATA
84865 TTAATAATTTATATA
1 TTAATAATTTA-ATA
*
84880 TTAA-AATAT-ATA
1 TTAATAATTTAATA
84892 TTAATA
1 TTAATA
84898 GTTAAGGTCA
Statistics
Matches: 88, Mismatches: 12, Indels: 30
0.68 0.09 0.23
Matches are distributed among these distances:
10 3 0.03
11 3 0.03
12 21 0.24
13 15 0.17
14 17 0.19
15 16 0.18
16 6 0.07
17 7 0.08
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (14 bp):
TTAATAATTTAATA
Found at i:84823 original size:17 final size:17
Alignment explanation
Indices: 84769--84826 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
84759 TATTATTTAC
84769 TTTAATAATTT-ATATAAT
1 TTTAAT-ATTTAAT-TAAT
*
84787 TTTAATA-TTAA-TAAA
1 TTTAATATTTAATTAAT
*
84802 ATTAATATTTAATTAAT
1 TTTAATATTTAATTAAT
84819 TTTAATAT
1 TTTAATAT
84827 AATTATATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
15 9 0.27
16 6 0.18
17 12 0.36
18 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAATATTTAATTAAT
Found at i:84969 original size:32 final size:31
Alignment explanation
Indices: 84868--84963 Score: 79
Period size: 31 Copynumber: 2.9 Consensus size: 31
84858 TTATAATTTA
* *
84868 ATAATTTATATA-TTAAAATATATATTAATAGT
1 ATAATTTATA-ACTT-AATTATAAATTAATAGT
* *
84900 -TAAGGTCATAACTTAATTATAAATTAATAGT
1 ATAA-TTTATAACTTAATTATAAATTAATAGT
84931 AATAATTTATAACTTATATTGATATAATTAATA
1 -ATAATTTATAACTTA-ATT-ATA-AATTAATA
84964 TTAATTGTTA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
31 19 0.37
32 15 0.29
33 6 0.12
34 3 0.06
35 8 0.16
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (31 bp):
ATAATTTATAACTTAATTATAAATTAATAGT
Found at i:85137 original size:21 final size:21
Alignment explanation
Indices: 85111--85151 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
85101 TAATAATTAT
85111 TAATATA-AATAGTAATTAAAA
1 TAATATATAATA-TAATTAAAA
*
85132 TAATATATATTATAATTAAA
1 TAATATATAATATAATTAAA
85152 TAAATACGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (21 bp):
TAATATATAATATAATTAAAA
Found at i:85202 original size:21 final size:20
Alignment explanation
Indices: 85167--85212 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
85157 ACGATACATA
*
85167 ATTTA-TATTATTTTATAAT
1 ATTTATTATTAATTTATAAT
*
85186 ATATTATTATTAATTTATTAT
1 AT-TTATTATTAATTTATAAT
85207 ATTTAT
1 ATTTAT
85213 ACTATAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 7 0.30
21 14 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
ATTTATTATTAATTTATAAT
Found at i:85210 original size:31 final size:31
Alignment explanation
Indices: 85164--85240 Score: 79
Period size: 31 Copynumber: 2.5 Consensus size: 31
85154 AATACGATAC
85164 ATAATTTA-TATTATTTTATAATAT-ATTATT
1 ATAATTTATTA-TATTTTATAATATAATTATT
* *
85194 ATTAATTTATTATA-TTTATACTATAATTGTT
1 A-TAATTTATTATATTTTATAATATAATTATT
*
85225 ATATTTTATTTATATT
1 ATAATTTA-TTATATT
85241 ACTATAGTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
30 16 0.41
31 20 0.51
32 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (31 bp):
ATAATTTATTATATTTTATAATATAATTATT
Found at i:85455 original size:16 final size:17
Alignment explanation
Indices: 85428--85480 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 17
85418 ATTATTAAAG
*
85428 TATAATACTTAA-TAAT
1 TATAATAATTAATTAAT
*
85444 TTTAATAATTAATTAAT
1 TATAATAATTAATTAAT
*
85461 TAT-ATAATTATTTAA-
1 TATAATAATTAATTAAT
85476 TATAA
1 TATAA
85481 ATATTTATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
15 3 0.10
16 22 0.71
17 6 0.19
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
TATAATAATTAATTAAT
Found at i:86382 original size:13 final size:13
Alignment explanation
Indices: 86364--86411 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
86354 CTAATCTATA
86364 TATTAATATAAAT
1 TATTAATATAAAT
*
86377 TATTAATATATAT
1 TATTAATATAAAT
*
86390 TATGGAATATTAAAT
1 TAT-TAATA-TAAAT
86405 TAATTAA
1 T-ATTAA
86412 ATTTAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 15 0.54
14 4 0.14
15 7 0.25
16 2 0.07
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (13 bp):
TATTAATATAAAT
Found at i:86626 original size:20 final size:21
Alignment explanation
Indices: 86594--86637 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
86584 TTAAATAAAT
86594 ATTAATTCATTTAT-TTAATA
1 ATTAATTCATTTATATTAATA
86614 ATTAATT-ACTTTATAATTAATA
1 ATTAATTCA-TTTAT-ATTAATA
86636 AT
1 AT
86638 ATTAATTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
19 1 0.05
20 12 0.57
22 8 0.38
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTAATTCATTTATATTAATA
Found at i:86713 original size:24 final size:24
Alignment explanation
Indices: 86648--86738 Score: 71
Period size: 24 Copynumber: 3.8 Consensus size: 24
86638 ATTAATTTAG
*
86648 TTATTAAATTA-TCTAATAATAA-A
1 TTATT-AATTATTATAATAATAATA
* *
86671 TTCTTAGTTAGTT-TAAATAATAATA
1 TTATTAATTA-TTAT-AATAATAATA
* *
86696 TTATTAATTATTATAATAGTACTA
1 TTATTAATTATTATAATAATAATA
* *
86720 ATATTAATTATAATAATAA
1 TTATTAATTATTATAATAA
86739 ATATAGCCAA
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
22 4 0.07
23 5 0.09
24 35 0.65
25 10 0.19
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (24 bp):
TTATTAATTATTATAATAATAATA
Found at i:86913 original size:18 final size:17
Alignment explanation
Indices: 86877--86917 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
86867 TTATTCTATA
* *
86877 ATAATTATATTATTCAT
1 ATAAATATATTATTAAT
86894 ATAAATATATTTATTAAT
1 ATAAATATA-TTATTAAT
86912 ATAAAT
1 ATAAAT
86918 TAAATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAAATATATTATTAAT
Found at i:87207 original size:27 final size:27
Alignment explanation
Indices: 87177--87242 Score: 66
Period size: 26 Copynumber: 2.5 Consensus size: 27
87167 AACAATTAAA
87177 TTTATATATAATTATCTGAA-TATTGAT
1 TTTATAT-TAATTATCTGAATTATTGAT
* * *
87204 TTTA-ATTTAAATATTTTAATTATTGAT
1 TTTATA-TTAATTATCTGAATTATTGAT
87231 TTT-TATTAATTA
1 TTTATATTAATTA
87243 ATAGATATCT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (27 bp):
TTTATATTAATTATCTGAATTATTGAT
Found at i:88630 original size:22 final size:21
Alignment explanation
Indices: 88563--88646 Score: 55
Period size: 23 Copynumber: 3.7 Consensus size: 21
88553 AATAATTATA
88563 ATATAATT-ATAATAACTAGATT
1 ATATAATTAAT-ATAA-TAGATT
* *
88585 ATTATATTTTAATA-AATTATATT
1 A-TATA-ATTAATATAA-TAGATT
88608 ATATAATTAATATAATAAGATT
1 ATATAATTAATATAAT-AGATT
*
88630 ATAATAGTTAAATATAA
1 AT-ATAATT-AATATAA
88647 GGTTTAATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
21 7 0.14
22 13 0.27
23 17 0.35
24 10 0.20
25 2 0.04
ACGTcount: A:0.51, C:0.01, G:0.04, T:0.44
Consensus pattern (21 bp):
ATATAATTAATATAATAGATT
Found at i:88968 original size:18 final size:19
Alignment explanation
Indices: 88927--88970 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
88917 ATTTACTATA
* *
88927 ATTATAATAGTATTAATTT
1 ATTATAATAATATCAATTT
88946 A-TATAATAATA-CAATTT
1 ATTATAATAATATCAATTT
88963 ATTATAAT
1 ATTATAAT
88971 TATTATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 6 0.27
18 15 0.68
19 1 0.05
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
ATTATAATAATATCAATTT
Found at i:88995 original size:22 final size:22
Alignment explanation
Indices: 88965--89010 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
88955 TACAATTTAT
88965 TATAATTATTATTAAAATAT-AA
1 TATAATTATTATT-AAATATGAA
* *
88987 TATATTTATTGTTAAATATGAA
1 TATAATTATTATTAAATATGAA
89009 TA
1 TA
89011 GATTATCATC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (22 bp):
TATAATTATTATTAAATATGAA
Found at i:89016 original size:21 final size:21
Alignment explanation
Indices: 88969--89016 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
88959 ATTTATTATA
*
88969 ATTATTATTAAAATATAATAT
1 ATTATTATTAAAATATAATAG
*
88990 ATTTATTGTT-AAATATGAATAG
1 A-TTATTATTAAAATAT-AATAG
89012 ATTAT
1 ATTAT
89017 CATCATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
ATTATTATTAAAATATAATAG
Found at i:89664 original size:23 final size:23
Alignment explanation
Indices: 89608--89664 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
89598 TTATAATTTG
*
89608 TATTAATTTTAATACAATATATAA
1 TATT-ATTATAATACAATATATAA
* * * *
89632 TAATAATATAATATAATATTTAA
1 TATTATTATAATACAATATATAA
89655 TATTATTATA
1 TATTATTATA
89665 TATTAATTAA
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
23 23 0.88
24 3 0.12
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TATTATTATAATACAATATATAA
Found at i:89674 original size:20 final size:19
Alignment explanation
Indices: 89617--89674 Score: 55
Period size: 20 Copynumber: 3.0 Consensus size: 19
89607 GTATTAATTT
*
89617 TAATACAATATATAA-TAA
1 TAATATAATATATAATTAA
*
89635 TAATATAATATAATATTTAA
1 TAATATAATAT-ATAATTAA
* *
89655 TATTATTATATATTAATTAA
1 TAATATAATATA-TAATTAA
89675 CTTCAATTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
18 10 0.31
19 4 0.12
20 18 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (19 bp):
TAATATAATATATAATTAA
Found at i:89845 original size:23 final size:21
Alignment explanation
Indices: 89814--89862 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
89804 AACATATCAG
*
89814 TAATTTTATAAATATATTATATT
1 TAATGTTAT-AATATATTA-ATT
89837 TAATGTTATAATATATTAATT
1 TAATGTTATAATATATTAATT
*
89858 AAATG
1 TAATG
89863 ACTTTAAATT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 7 0.29
22 9 0.38
23 8 0.33
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (21 bp):
TAATGTTATAATATATTAATT
Found at i:91166 original size:181 final size:180
Alignment explanation
Indices: 90793--91166 Score: 410
Period size: 181 Copynumber: 2.1 Consensus size: 180
90783 AAGTAAACAA
* * ** * *
90793 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTATTAAATTTGAATTATTTTAATC
1 ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTAAAATATTATTAAATTAGAATTATTTTAATC
** ** * * *
90858 CAAATAAGCTTGTACGAACAAAACAATTGTTTTATGTTAAAAGAAAATGTCATAACAATTTGAAA
66 CAAATAAAATAATACGAACAAAACAATTGTTTGATGATAAAAGAAAAGGTCATAACAATTTGAAA
* * ** * **
90923 TAGATAATCATTTATAAAGTCTTAACTATTTGAACCGGTTCGACAATTAG
131 TAAATAATCATTGATAAAGTCAAAACTATTTGAAACGGTTCGACAAGCAG
* * *
90973 ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTGAAATATTATTAAATTAGTATTATTTTATTC
1 ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTAAAATATTATTAAATTAGAATTATTTTAATC
* * * * *
91038 TAAATAAAATAATATGAACAGAACCAATTGTTTGATGATAAAATAAAAGGTTATAACAATTTGAA
66 CAAATAAAATAATACGAACA-AAACAATTGTTTGATGATAAAAGAAAAGGTCATAACAATTTGAA
* * * **
91103 ATAAATAATTATTGA-AATAGTCAAAACTATTTGAAATGGTTTGGTAAGCAG
130 ATAAATAATCATTGATAA-AGTCAAAACTATTTGAAACGGTTCGACAAGCAG
91154 ATTT-TCTTTTTAA
1 ATTTAT-TTTTTAA
91167 ATCTCTTACA
Statistics
Matches: 158, Mismatches: 33, Indels: 5
0.81 0.17 0.03
Matches are distributed among these distances:
180 73 0.46
181 85 0.54
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (180 bp):
ATTTATTTTTTAATTTTCTTGGTTATTAAGTTTTAAAATATTATTAAATTAGAATTATTTTAATC
CAAATAAAATAATACGAACAAAACAATTGTTTGATGATAAAAGAAAAGGTCATAACAATTTGAAA
TAAATAATCATTGATAAAGTCAAAACTATTTGAAACGGTTCGACAAGCAG
Found at i:91926 original size:46 final size:44
Alignment explanation
Indices: 91866--91970 Score: 140
Period size: 46 Copynumber: 2.3 Consensus size: 44
91856 CTATAATTAT
*
91866 TAAATTATAGTAAAATATTATAAC-ATTATTAAATTCTATTTACTA
1 TAAATTATATTAAAATATTAT-ACTATTATTAAATTCTA-TTACTA
*
91911 TAAATTAGTATTAAAATATTATACTATTATTAAATTCTATTATTA
1 TAAATTA-TATTAAAATATTATACTATTATTAAATTCTATTACTA
91956 TAACATTATTATTAA
1 TAA-ATTA-TATTAA
91971 GTAAATATGC
Statistics
Matches: 54, Mismatches: 3, Indels: 5
0.87 0.05 0.08
Matches are distributed among these distances:
45 17 0.31
46 37 0.69
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.47
Consensus pattern (44 bp):
TAAATTATATTAAAATATTATACTATTATTAAATTCTATTACTA
Found at i:92821 original size:25 final size:24
Alignment explanation
Indices: 92793--92877 Score: 66
Period size: 25 Copynumber: 3.4 Consensus size: 24
92783 AATTTATTAT
92793 ATTAATATTTATAATATTACTAATA
1 ATTAATATTTATAATATTA-TAATA
* * *
92818 ATTAAT-GTTATTATAATATAATA
1 ATTAATATTTATAATATTATAATA
*
92841 ATTATAATATTTTTATAATATTA-AAAA
1 A-T-TAATA--TTTATAATATTATAATA
*
92868 ATGAATATTT
1 ATTAATATTT
92878 TTATCGATCA
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
23 9 0.19
24 10 0.21
25 14 0.30
26 1 0.02
27 4 0.09
28 9 0.19
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.48
Consensus pattern (24 bp):
ATTAATATTTATAATATTATAATA
Found at i:95575 original size:24 final size:23
Alignment explanation
Indices: 95536--95598 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 23
95526 TAATTATGTT
*
95536 TATTTAATTATATATATAATATTAAC
1 TATTT-ATTA-ATATATAAT-TTAAA
*
95562 TA-TTATTAAGTATATTATTTAAA
1 TATTTATTAA-TATATAATTTAAA
95585 TATTTATTAATATA
1 TATTTATTAATATA
95599 CATAATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
23 11 0.33
24 18 0.55
25 2 0.06
26 2 0.06
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (23 bp):
TATTTATTAATATATAATTTAAA
Found at i:95699 original size:14 final size:14
Alignment explanation
Indices: 95664--95692 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95654 TTGTTATAAG
95664 ATAAT-ATAATATT
1 ATAATAATAATATT
95677 ATAATAATAATATT
1 ATAATAATAATATT
95691 AT
1 AT
95693 TTAAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
ATAATAATAATATT
Found at i:95738 original size:20 final size:20
Alignment explanation
Indices: 95713--95750 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
95703 GGTTATGTAT
*
95713 ATATACTTAAAACTTTATTC
1 ATATACTTAAAAATTTATTC
95733 ATATACTTAAAAATTTAT
1 ATATACTTAAAAATTTAT
95751 ATATTATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.11, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATACTTAAAAATTTATTC
Found at i:95848 original size:13 final size:12
Alignment explanation
Indices: 95812--95869 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
95802 TTAATTAATT
95812 TAATA-ATTAT-
1 TAATATATTATA
95822 TAATATATTCATA
1 TAATATATT-ATA
95835 TAATTATATTATA
1 TAA-TATATTATA
*
95848 TAA-AT-TTAAA
1 TAATATATTATA
*
95858 TAGTATATTATA
1 TAATATATTATA
95870 ATTATTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 9 0.23
14 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TAATATATTATA
Found at i:95903 original size:19 final size:17
Alignment explanation
Indices: 95869--95910 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 17
95859 AGTATATTAT
95869 AATTATTATATTAAATA
1 AATTATTATATTAAATA
*
95886 AATTATTAGTAGTTAAATT
1 AATTATTA-TA-TTAAATA
95905 AATTAT
1 AATTAT
95911 ATTAATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 8 0.36
18 2 0.09
19 12 0.55
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (17 bp):
AATTATTATATTAAATA
Found at i:95915 original size:33 final size:37
Alignment explanation
Indices: 95835--95915 Score: 100
Period size: 36 Copynumber: 2.3 Consensus size: 37
95825 TATATTCATA
*
95835 TAATTATATTATATAAATTTAAATAGTATATTATAAT
1 TAATTATATTAAATAAATTTAAATAGTATATTATAAT
* *
95872 T-ATTATATTAAATAAA-TT-ATTAGTA-GTTA-AAT
1 TAATTATATTAAATAAATTTAAATAGTATATTATAAT
95904 TAATTATATTAA
1 TAATTATATTAA
95916 TTATTTTAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
32 4 0.10
33 13 0.32
34 6 0.15
35 2 0.05
36 14 0.35
37 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (37 bp):
TAATTATATTAAATAAATTTAAATAGTATATTATAAT
Found at i:96141 original size:18 final size:20
Alignment explanation
Indices: 96099--96144 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
96089 AAGATACTAT
*
96099 TTTATAGTATTTTATCTATTA
1 TTTATA-TATTTAATCTATTA
96120 TTTATATATTTAAT-TA-TA
1 TTTATATATTTAATCTATTA
96138 TTTATAT
1 TTTATAT
96145 TATATGCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 9 0.38
19 2 0.08
20 7 0.29
21 6 0.25
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTATATATTTAATCTATTA
Found at i:96160 original size:23 final size:22
Alignment explanation
Indices: 96115--96170 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
96105 GTATTTTATC
* *
96115 TATTATTTATAT-ATTTAATTA
1 TATTAATTATATGCTTTAATTA
96136 TATTTATATTATATGCTTTAA-TA
1 TA-TTA-ATTATATGCTTTAATTA
96159 TATTAATTATAT
1 TATTAATTATAT
96171 AATTATTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
21 9 0.30
22 6 0.20
23 10 0.33
24 5 0.17
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (22 bp):
TATTAATTATATGCTTTAATTA
Found at i:96373 original size:15 final size:16
Alignment explanation
Indices: 96339--96381 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
96329 TTATTACATG
* *
96339 TATTATAAATTATTAT
1 TATTATAAATTAATAA
96355 TATT-TAAATTAATAA
1 TATTATAAATTAATAA
*
96370 TATTATTAATTA
1 TATTATAAATTA
96382 TAACTAAACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATAAATTAATAA
Found at i:96473 original size:19 final size:19
Alignment explanation
Indices: 96449--96515 Score: 57
Period size: 19 Copynumber: 3.4 Consensus size: 19
96439 TTATAAAATA
96449 ATTATATTGTA-AATTAAT
1 ATTATATTGTATAATTAAT
*
96467 CATTATATAT-TATAATTACT
1 -ATTATAT-TGTATAATTAAT
*
96487 ATTATATTGTTTAATATAAGAT
1 ATTATATTGTATAAT-T-A-AT
96509 ATTATAT
1 ATTATAT
96516 GATTATTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
18 1 0.03
19 21 0.54
20 8 0.21
21 1 0.03
22 8 0.21
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (19 bp):
ATTATATTGTATAATTAAT
Found at i:97336 original size:123 final size:121
Alignment explanation
Indices: 97078--97311 Score: 285
Period size: 124 Copynumber: 1.9 Consensus size: 121
97068 ATTGCTCTTC
* * **
97078 CAAAAAAA-AAGAAATAAAAAGAATTTCTAAATAGGCCCAAATGGTGGAAAATTTAGAAATTTTG
1 CAAAAAAATAATAAATAAAAAGAATTTCTAAATAGGCCCAAATGGTGGAAAATTTAGAAAATTCA
* * * *
97142 AAAAAGAAAATATTTCTAAATTGACTCAAATAGTGAAAAATTTAGAAATCCAAATAA
66 AAAAAGAAAATATTTCTAAATTGACCCAAATAGAGAAAAACTCAGAAAT-CAAATAA
*
97199 -AATAAATAATAATAAATAAAGAGAATTTCTAAATAGGCCCCCAAATGGTGGAAAATTTA-AAAA
1 CAA-AAA-AATAATAAATAAAAAGAATTTCTAAATAGG--CCCAAATGGTGGAAAATTTAGAAAA
* * * *
97262 TTCAAAAAAGAAAATATTTCTAATTTGGCCCAAATAGAGGAATACTCAGA
62 TTCAAAAAAGAAAATATTTCTAAATTGACCCAAATAGAGAAAAACTCAGA
97312 TATATTTTCA
Statistics
Matches: 95, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
120 2 0.02
121 3 0.03
122 2 0.02
123 25 0.26
124 43 0.45
125 20 0.21
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.25
Consensus pattern (121 bp):
CAAAAAAATAATAAATAAAAAGAATTTCTAAATAGGCCCAAATGGTGGAAAATTTAGAAAATTCA
AAAAAGAAAATATTTCTAAATTGACCCAAATAGAGAAAAACTCAGAAATCAAATAA
Found at i:97810 original size:21 final size:22
Alignment explanation
Indices: 97779--98024 Score: 223
Period size: 21 Copynumber: 11.0 Consensus size: 22
97769 AATTAATAAA
97779 TCTTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * *
97801 TCAT-AAATGAGAATATTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
97825 TCTTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* *
97847 TCAT-AAATGAGAATCTTTAAGAAA
1 TCTTCAAATGAGAATCTTT--G-AG
*
97871 TCCTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* *
97893 TCTT-AAATAAGAATATTTAAGAAG
1 TCTTCAAATGAGAATCTTT--G-AG
* *
97917 TCCTCAAATGAGAATTTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
* * * * *
97939 TTTTCAAATGGGAATGTCTAAG
1 TCTTCAAATGAGAATCTTTGAG
97961 T-TTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
97982 TTTTCAAATGAGAATCTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
*
98004 T-TTCAAATGAGAATTTTTGAG
1 TCTTCAAATGAGAATCTTTGAG
98025 ATGTGAAACC
Statistics
Matches: 184, Mismatches: 27, Indels: 27
0.77 0.11 0.11
Matches are distributed among these distances:
21 75 0.41
22 51 0.28
23 6 0.03
24 13 0.07
25 39 0.21
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (22 bp):
TCTTCAAATGAGAATCTTTGAG
Found at i:97826 original size:46 final size:46
Alignment explanation
Indices: 97771--98024 Score: 281
Period size: 46 Copynumber: 5.7 Consensus size: 46
97761 TTAAATATAA
* *
97771 TTAATAAATCTTCAAATGAGAATCTTTGAGTCATAAATGAGAATAT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATAT
* *
97817 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCATAAATGAGAATCT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATAT
* *
97863 TTAAGAAATCCTCAAATGAGAATCTTTGAGTCTTAAATAAGAATAT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATAT
* * * * * *
97909 TTAAGAAGTCCTCAAATGAGAATTTTTGAGTTTTCAAATGGGAATGT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT-AAATGAGAATAT
* * *
97956 CTAAG---T-TTCAAATGAGAATCTTTGAGTTTTCAAATGAGAATCT
1 TTAAGAAATCTTCAAATGAGAATCTTTGAGTCTT-AAATGAGAATAT
* *
97999 TT--G-AGT-TTCAAATGAGAATTTTTGAG
1 TTAAGAAATCTTCAAATGAGAATCTTTGAG
98025 ATGTGAAACC
Statistics
Matches: 186, Mismatches: 19, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
41 1 0.01
43 54 0.29
44 1 0.01
46 117 0.63
47 13 0.07
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (46 bp):
TTAAGAAATCTTCAAATGAGAATCTTTGAGTCTTAAATGAGAATAT
Found at i:100740 original size:34 final size:34
Alignment explanation
Indices: 100675--100740 Score: 82
Period size: 34 Copynumber: 1.9 Consensus size: 34
100665 TGAATAATAA
* *
100675 TTATAAATTATTACTAATATGATTATTAATATAG
1 TTATAAATTAATACTAATATGATTATAAATATAG
100709 TTATAAATTACATA-TAATATTG-TTATAAATAT
1 TTATAAATTA-ATACTAATA-TGATTATAAATAT
100741 TATAAGCCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 24 0.86
35 4 0.14
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (34 bp):
TTATAAATTAATACTAATATGATTATAAATATAG
Found at i:101022 original size:21 final size:19
Alignment explanation
Indices: 100984--101029 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
100974 TTATAAGATT
*
100984 TAATAAATATAGTTAATTA
1 TAATAAATATAATTAATTA
*
101003 TTATAAATATATATTAAATTA
1 TAATAAATATA-ATT-AATTA
101024 TAATAA
1 TAATAA
101030 TATTAACATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 10 0.45
20 2 0.09
21 10 0.45
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
TAATAAATATAATTAATTA
Found at i:101025 original size:18 final size:16
Alignment explanation
Indices: 101002--101035 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
100992 ATAGTTAATT
101002 ATTATAAATATATATTAA
1 ATTAT-AATA-ATATTAA
101020 ATTATAATAATATTAA
1 ATTATAATAATATTAA
101036 CATGATTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTATAATAATATTAA
Found at i:101088 original size:15 final size:14
Alignment explanation
Indices: 101070--101191 Score: 56
Period size: 14 Copynumber: 8.4 Consensus size: 14
101060 AATATAATAC
101070 AATTAAATTTATATT
1 AATTAAATTTA-ATT
*
101085 AATTATA-TTAATT
1 AATTAAATTTAATT
101098 -ATTAATATTTAGTATTT
1 AATTAA-ATTTA--A-TT
*
101115 AA-TACATTTAATTT
1 AATTAAATTTAA-TT
*
101129 AATTAATTTTAATT
1 AATTAAATTTAATT
*
101143 AAATT-AATTTTATT
1 -AATTAAATTTAATT
* ** *
101157 CATTATCTTTAAAT
1 AATTAAATTTAATT
101171 AA-TAAATATTAATT
1 AATTAAAT-TTAATT
101185 AAATTAA
1 -AATTAA
101192 TGTAACTATA
Statistics
Matches: 79, Mismatches: 16, Indels: 23
0.67 0.14 0.19
Matches are distributed among these distances:
12 4 0.05
13 10 0.13
14 32 0.41
15 19 0.24
16 9 0.11
17 4 0.05
18 1 0.01
ACGTcount: A:0.45, C:0.02, G:0.01, T:0.52
Consensus pattern (14 bp):
AATTAAATTTAATT
Found at i:102662 original size:21 final size:20
Alignment explanation
Indices: 102637--102675 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
102627 AAAAATACTA
102637 ATAATATATTACTTAATTAAT
1 ATAATATA-TACTTAATTAAT
*
102658 ATAATATATATTTAATTA
1 ATAATATATACTTAATTA
102676 TAACATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATATATACTTAATTAAT
Found at i:102873 original size:21 final size:23
Alignment explanation
Indices: 102831--102880 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 23
102821 TATAGTTAAT
* * *
102831 TAATAATTGATTAATTTTATTA-
1 TAATATTTGATTAAGTTCATTAG
102853 TAATATTTG-TTAAGTTCATTAG
1 TAATATTTGATTAAGTTCATTAG
102875 TAATAT
1 TAATAT
102881 AATTAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (23 bp):
TAATATTTGATTAAGTTCATTAG
Found at i:102990 original size:25 final size:26
Alignment explanation
Indices: 102962--103036 Score: 93
Period size: 25 Copynumber: 2.9 Consensus size: 26
102952 CTATTATACT
*
102962 TAAATATAATATATT-GTTATTTATC
1 TAAATATAATATATTATTTATTTATC
*
102987 TAAATATATTATAATTATTTATTTATC
1 TAAATATAATAT-ATTATTTATTTATC
103014 T--ATATAATTATATTATTTATTTA
1 TAAATATAA-TATATTATTTATTTA
103037 ATAATAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
25 28 0.64
26 6 0.14
27 10 0.23
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (26 bp):
TAAATATAATATATTATTTATTTATC
Found at i:103040 original size:20 final size:20
Alignment explanation
Indices: 102991--103065 Score: 75
Period size: 20 Copynumber: 3.9 Consensus size: 20
102981 TTTATCTAAA
*
102991 TATATTATAATTAT-TTATT
1 TATATAATAATTATATTATT
*
103010 TATCTATATAATTATATTATT
1 TATATA-ATAATTATATTATT
* * *
103031 TATTTAATAATAATATTAAT
1 TATATAATAATTATATTATT
103051 TA-ATAATAA-TATATT
1 TATATAATAATTATATT
103066 GATACTATAT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
18 5 0.11
19 10 0.21
20 22 0.47
21 10 0.21
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (20 bp):
TATATAATAATTATATTATT
Found at i:103048 original size:25 final size:24
Alignment explanation
Indices: 102978--103052 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 24
102968 TAATATATTG
*
102978 TTATTTATCTA-A-ATATATTATAA
1 TTATTTATTTATATATATATTAT-A
*
103001 TTATTTATTTATCTATATAATTATA
1 TTATTTATTTATATATAT-ATTATA
103026 TTATTTATTTA-ATAATAATATTA-A
1 TTATTTATTTATAT-AT-ATATTATA
103050 TTA
1 TTA
103053 ATAATAATAT
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 10 0.23
24 5 0.11
25 22 0.50
26 7 0.16
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (24 bp):
TTATTTATTTATATATATATTATA
Found at i:103719 original size:178 final size:179
Alignment explanation
Indices: 103513--104065 Score: 552
Period size: 178 Copynumber: 3.1 Consensus size: 179
103503 AAAAAATTTT
*
103513 TACTTATTAATTTTTGAAACATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGAATGAAT
1 TACTTATTAATTTTTGAAATATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGAATGAAT
* * *
103578 AGAACCAATTGTTTTATGACAAAATAAAATGTTGTAATGTTTTGAAATAGATAATTATTAAGACA
66 AGAAACAATTGTTTTATGACAAAA-AAAATGTTATAATGATTTGAAATAGATAATTATTAAGACA
*
103643 GTCATAACTATTTGAACTTATTCGATAAATAGATTTATTTTTTTAA-TTC
130 GTCATAACTATTTGAACTTGTTCGATAAATAGATTTATTTTTTTAACTTC
* * * * *
103692 T-CTTTTTAATTTTTGGAATATTAATAAA-TTAGTATTATTTTATTTCAAATAAGC-TAACATTA
1 TACTTATTAATTTTTGAAATATTAATAAATTTA-TATTATTTTATTTGAAATAAGCTTGA-ATGA
* * *
103754 ATTGAAACAATTGTTTTATTACAAAACAAAATGTTATAATGATTTGAAGTAGATAATTATTCAA-
64 ATAGAAACAATTGTTTTATGACAAAA-AAAATGTTATAATGATTTGAAATAGATAATTATT-AAG
* * * * * * * *
103818 AGAGTCATGACTATTTAAACTTGTTTGGT--A-A-ACTTATTTTTTAAAATCTTT
127 ACAGTCATAACTATTTGAACTTGTTCGATAAATAGATTTATTTTTT-TAA-CTTC
* ** ** * *
103869 TACTTATTAATTGTTGAAATATTAATAAATCAATATTATTTTAATCCG-AATAAGCTTGTATGGA
1 TACTTATTAATTTTTGAAATATTAATAAATTTATATTATTTT-ATTTGAAATAAGCTTGAATGAA
** * * * *
103933 CGGAAACAATTGTTTTATGACAAAGCAAAAAAGTCATAA-GAATTTGAAATAAATAATTATTCAG
65 TAGAAACAATTGTTTTATGACAAA--AAAAATGTTATAATG-ATTTGAAATAGATAATTATTAAG
* * * * * *
103997 ATAGTCATAACGATTTGAATTTGTTCAATAAATAGATTTAATTTTTTAAATCTTT
127 ACAGTCATAACTATTTGAACTTGTTCGATAAATAGATTT-ATTTTTTTAA-CTTC
104052 TACTTATTAATTTT
1 TACTTATTAATTTT
104066 ATTATTAATA
Statistics
Matches: 303, Mismatches: 52, Indels: 34
0.78 0.13 0.09
Matches are distributed among these distances:
174 10 0.03
175 3 0.01
176 1 0.00
177 8 0.03
178 191 0.63
179 56 0.18
180 1 0.00
181 1 0.00
182 1 0.00
183 24 0.08
184 7 0.02
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (179 bp):
TACTTATTAATTTTTGAAATATTAATAAATTTATATTATTTTATTTGAAATAAGCTTGAATGAAT
AGAAACAATTGTTTTATGACAAAAAAAATGTTATAATGATTTGAAATAGATAATTATTAAGACAG
TCATAACTATTTGAACTTGTTCGATAAATAGATTTATTTTTTTAACTTC
Found at i:104540 original size:19 final size:19
Alignment explanation
Indices: 104513--104553 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
104503 ATAATTGTTG
* *
104513 TTTATAATAGTAAATATTA
1 TTTAAAATAGTAAATAATA
*
104532 TTTAAAATAGTTAATAATA
1 TTTAAAATAGTAAATAATA
104551 TTT
1 TTT
104554 TGAAAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTAAAATAGTAAATAATA
Found at i:104666 original size:19 final size:19
Alignment explanation
Indices: 104642--104681 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
104632 ATAAATGAAG
*
104642 ATTAAA-TATTATTAATTAA
1 ATTAAATTAATATT-ATTAA
104661 ATTAAATTAATATTATTAA
1 ATTAAATTAATATTATTAA
104680 AT
1 AT
104682 ATTATTATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAATTAATATTATTAA
Found at i:104687 original size:3 final size:3
Alignment explanation
Indices: 104666--104717 Score: 68
Period size: 3 Copynumber: 16.7 Consensus size: 3
104656 ATTAAATTAA
* *
104666 ATT AAT ATT ATT AAAT ATT ATT ATT ATT ATT ATAT ATT ATT ATT ATT
1 ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT
104713 ATT AT
1 ATT AT
104718 AATATTGATA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
3 38 0.88
4 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:104688 original size:19 final size:19
Alignment explanation
Indices: 104648--104738 Score: 94
Period size: 19 Copynumber: 4.6 Consensus size: 19
104638 GAAGATTAAA
*
104648 TATTATTAATTAAAT-TAAAT
1 TATTATT-ATTAAATAT-TAT
*
104668 TAATATTATTAAATATTAT
1 TATTATTATTAAATATTAT
*
104687 TATTATTATTATATATTAT
1 TATTATTATTAAATATTAT
104706 TATTATTATTATAATATTGAT
1 TATTATTATTA-AATATT-AT
*
104727 ATATTGTTATTA
1 -TATTATTATTA
104739 CTGATAATTA
Statistics
Matches: 61, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
19 37 0.61
20 12 0.20
21 2 0.03
22 10 0.16
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TATTATTATTAAATATTAT
Found at i:104696 original size:22 final size:20
Alignment explanation
Indices: 104666--104738 Score: 96
Period size: 19 Copynumber: 3.6 Consensus size: 20
104656 ATTAAATTAA
*
104666 ATTAATATTATTA-AATATT
1 ATTATTATTATTATAATATT
104685 ATTATTATTATTAT-ATATT
1 ATTATTATTATTATAATATT
104704 ATTATTATTATTATAATATT
1 ATTATTATTATTATAATATT
*
104724 GATATATTGTTATTA
1 -AT-TATTATTATTA
104739 CTGATAATTA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
19 31 0.65
20 5 0.10
21 2 0.04
22 10 0.21
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
ATTATTATTATTATAATATT
Found at i:104782 original size:16 final size:16
Alignment explanation
Indices: 104745--104774 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
104735 ATTACTGATA
104745 ATTAATTTTAATAGTC
1 ATTAATTTTAATAGTC
104761 ATTAATTTT-ATAGT
1 ATTAATTTTAATAGT
104775 ATATTAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.37, C:0.03, G:0.07, T:0.53
Consensus pattern (16 bp):
ATTAATTTTAATAGTC
Found at i:105047 original size:4 final size:4
Alignment explanation
Indices: 105032--105061 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
105022 GAATTGCATA
105032 TAAT TAATT TAAT TAAT TAAT TAAT TAAT T
1 TAAT TAA-T TAAT TAAT TAAT TAAT TAAT T
105062 TAAAATTAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (4 bp):
TAAT
Found at i:105056 original size:21 final size:19
Alignment explanation
Indices: 105032--105071 Score: 62
Period size: 21 Copynumber: 2.0 Consensus size: 19
105022 GAATTGCATA
105032 TAATTAATTTAATTAATTAAT
1 TAATTAATTTAA--AATTAAT
105053 TAATTAATTTAAAATTAAT
1 TAATTAATTTAAAATTAAT
105072 AAATATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.37
21 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATTAATTTAAAATTAAT
Found at i:105079 original size:21 final size:21
Alignment explanation
Indices: 105031--105081 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
105021 TGAATTGCAT
105031 ATAATTAATTTAATTAATTAA
1 ATAATTAATTTAATTAATTAA
*
105052 TTAATTAATTTAAAATTAA-TAA
1 ATAATTAATTT--AATTAATTAA
105074 AT-ATTAAT
1 ATAATTAAT
105082 AAATATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 16 0.62
22 4 0.15
23 6 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (21 bp):
ATAATTAATTTAATTAATTAA
Found at i:105190 original size:16 final size:14
Alignment explanation
Indices: 105121--105181 Score: 52
Period size: 15 Copynumber: 4.3 Consensus size: 14
105111 TTTGTTAATT
105121 TATATTAATTATAAA
1 TATATTAA-TATAAA
* * * *
105136 TTTAATATTAATAAT
1 TATATTAAT-ATAAA
*
105151 TTTATTAAT-TAAA
1 TATATTAATATAAA
105164 TATATTAATATAAA
1 TATATTAATATAAA
105178 TATA
1 TATA
105182 CTATAATATT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
13 11 0.31
14 9 0.25
15 16 0.44
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TATATTAATATAAA
Found at i:105228 original size:17 final size:18
Alignment explanation
Indices: 105200--105233 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
105190 TTTCTATAAT
105200 GTTATATTAATACTAAAA
1 GTTATATTAATACTAAAA
*
105218 GTTAT-TTAATATTAAA
1 GTTATATTAATACTAAA
105234 TTAATTTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.47, C:0.03, G:0.06, T:0.44
Consensus pattern (18 bp):
GTTATATTAATACTAAAA
Found at i:105701 original size:13 final size:13
Alignment explanation
Indices: 105674--105731 Score: 55
Period size: 13 Copynumber: 4.4 Consensus size: 13
105664 AATTATTATT
105674 TAAATTATTAA-TA
1 TAAA-TATTAATTA
105687 TAAATATTAATTA
1 TAAATATTAATTA
* *
105700 TATATATTTATTA
1 TAAATATTAATTA
* *
105713 TAAATTATAAATAA
1 TAAA-TATTAATTA
105727 TAAAT
1 TAAAT
105732 TGGATAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
12 6 0.16
13 21 0.57
14 10 0.27
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAATATTAATTA
Done.