Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168453.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_664, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 20225
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.26
Found at i:1038 original size:26 final size:26
Alignment explanation
Indices: 1009--1061 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
999 CCGGTCTGAT
1009 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
1035 CTTAGATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
1061 C
1 C
1062 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:2837 original size:26 final size:26
Alignment explanation
Indices: 2786--2838 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
2776 CCGGTCTGAT
*
2786 CTTACACTGGGAATGAACTCCTTATG
1 CTTACACTGGGAATGAACTCCGTATG
* *
2812 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
2838 C
1 C
2839 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:3318 original size:890 final size:888
Alignment explanation
Indices: 679--3750 Score: 3967
Period size: 881 Copynumber: 3.4 Consensus size: 888
669 CCTAGTGCCA
*
679 TTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
1 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
744 ATGCTCTTTAAGTGGGTGTGAGTTCTCGAGGTTTGATCAGGGATAGGAGGCAAATATAAGGGCCA
66 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
809 AATACCAGCACCCATCGTACATCATGTGCGCACACCCCCTCCCCCGCTCCCCCAATTG-CTGGAA
131 AGTACCAGCACCCATCGCACATCATGTGCGCACA----C-CCCCCAC-CCCCCAATCGTC-GGAA
873 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTAGCGATGCTTCGGTGATGGTGCCCCAGG
189 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATG--CT----A-G--TC---GATGGTGCCCCAGG
* * * *
938 CAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCACCC-ATAATCCTTGGTCCG
242 CAAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCTAACCCTCGGTCCG
* * * *
1002 GTCTGATCTTACACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTATG
307 ATCTGATCTTACACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * *
1067 TCAACCCATGAAATGAGCGTGCGGGCGCTCAGCCAGCTAGAGGGGCAGGATGCGCAAGCTGGGGA
372 TCAACCCACGAAATGAGCGT----G-ACTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCGGGGA
* * * * * ** * * * *
1132 TCGATCGGGTCCCCCCTACTTGTTGCCAATCCTGTTGCTGCAACCCTTGGTCCGGTTCGATCTTA
432 TTGATCGGGTCCCCCCTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGATCTGGTCCGATCTTA
* * * * * * *
1197 GACTAGGAATGAAATCCGTATGCCTAAGCCAATCGACAAAATGAGCAGGCGGGCAGGCACTATGT
497 GACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCAGGCGGGCGGGCACTATGC
*
1262 CGGCCAGAGAGGCAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCT
562 CGGCCAGAGAGGC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* * *
1327 TCATATTTCTATCGTGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCC
626 TCATATTTCTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
1392 TTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAC
691 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTAC
* * * * * *
1457 GATTCGTGATTTTTTTAAAATTTTCTCAGAAGCAGTTTTGGCCGCAAACTTGGTAGACGTGATCT
756 GGTTTGAGATTTTTTTAAAATTTTATCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * ** *
1522 TTGTATTTTTATTGGCTTGCACAAAACAATTCAGCCAAAAACTTGAAGTGTACATGATTTTGTGG
821 TTGTATTTTTTTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACA-GATTTTGTGA
1587 CCAT
885 CCAT
* *
1591 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCCA
1 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
1656 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCA
66 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
1721 AGTACCAGCACCCATCACACATCATGTGCGTACACCCCCCAACCCCCCAATCGTTGGAACCCTAA
131 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-ACCCCCCAATCGTCGGAACCCCAA
* * * * *
1786 TGCCGTCGGTCAAGTTCT-C--C---G--A--CGATGGTGCCTC-GAGCGAAAAAAAAGGTGGCA
195 TGCCGTCGGTCAGGTTCTCCGACGATGCTAGTCGATGGTGCCCCAG-GCAAAAAAAAATGCGGCA
* *
1840 CCAGCACAT-CTCGAGCCCAGCATGTGCACCCG-TAACCCTCGGTCCGATCTGATCTTACTCTGG
259 CCAGCACATGCCCGAGCCCAGCATGTGCACCCGCTAACCCTCGGTCCGATCTGATCTTACACTGG
1903 GAATGAACTCCATATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
324 GAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT--G
* * * * * * * * ** *
1967 AGTGTGGGCTCTCAGTC-GACCAGAGGGGC-AGCATGCGTATGTCGGGGA-TCAACCAGTCCCCG
387 AGCGT--G-ACTCAGCCAG-CCAGAGGGGCAAG-ATGCGCAAGCCGGGGATTGATCGGGTCCCCC
* * * *
2029 CTGCGTGCTACCGATCCTGCTGCCACAACCCTC-AGTTTGATCCGATCTTAGACTGGGAATGAAC
447 CTGCGTGCTGCCAATCCTGCTGCCACAACCCTCGA-TCTGGTCCGATCTTAGACTGGGAATGAAC
* * * * * *
2093 TTCATATGCCTTAGCCAATCGACGAAACGAGCTGGCGGGCGGGCATTACGCCGGCCAGGGAGGCG
511 TCCATATGCCTAAGCCAATCGACGAAACGAGCAGGCGGGCGGGCACTATGCCGGCCAGAGAGGCG
* * * *
2158 GATGCGCAAGCCATGGATCGATAGGGTGCTAGGTGGGTTTAGGCACACCTTCATATTTCCACCAT
576 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCAT
* * *
2223 GCCAATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTTCCTTAGGCCTTCATGTGAAGTTTC
641 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTC
*
2288 ATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGGGATTTTTT
706 ATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGAGATTTTTT
* * * * *
2353 AAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGATAGATGTGATCCTTGTATTTTTTTTGG
771 TAAAATTTTATCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
2418 CATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAGAATTTTGTGACCAT
836 CATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAG-ATTTTGTGACCAT
* *
2472 TT-AAAAAGAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCA
1 TTGAAAAA-AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
2536 AATGCTCTTTTAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
65 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
2601 AAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCCGCCCCTCCAATCGTCGGAACCCCA
130 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCC-CCAATCGTCGGAACCCCA
* * * * **
2666 ATACCG-CTGGTCAGGTTCTTCGACGATGCTTTAG-CGATGGTGCCCCGGGCGAAAAAAAATGTA
194 ATGCCGTC-GGTCAGGTTCTCCGACGATGC--TAGTCGATGGTGCCCCAGGCAAAAAAAAATGCG
* * * * *
2729 TCACCAGCACATGCCCAAGCCCAGCATGTGCACCAGCT-ACCCTCAGTCCGGTCTGATCTTACAC
256 GCACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCTAACCCTCGGTCCGATCTGATCTTACAC
* * * * *
2793 TGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCATGAAAC
321 TGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAT
2858 GAGCGT-ACTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCGGGGATTGATCGGGTCCCCCCTGC
386 GAGCGTGACTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCGGGGATTGATCGGGTCCCCCCTGC
* *
2922 GTGCTGCCAATCCTGCTGCCATAACCCTCGATCTGGTCCGATCTTAGATTGGGAATGAACTCCAT
451 GTGCTGCCAATCCTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCAT
* * * ** *
2987 ATGCCTAAGTCAA-CTGACGAGACGAGCGGGCAAGCGGGCACTATGCCGGCCAGAGAGTCGGGAT
516 ATGCCTAAGCCAATC-GACGAAACGAGCAGGCGGGCGGGCACTATGCCGGCCAGAGAGGC-GGAT
* * * ** *
3051 GTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTAATATTTCTGGCATGTC
579 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCC
*
3116 AATGCCAGTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
644 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
3181 GCAAGATGACTCGTTTGCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAA
709 GCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAA
* * *
3246 AATTCTATCAGAAGCAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTTTTGGCAT
774 AATTTTATCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
*
3311 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCAT
839 GCACAAAACAATTCAGCTAAAAACTCAAAGTGTACA-GATTTTGTGACCAT
* * *
3362 TTGAAAAAAGTGTCCTCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGA
1 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
3427 ATG--C--TAAGTGGGTGTGAGTTCTCGAGGTTTGATGAGGGCTAGGGGGCCAATATAAGGGCCA
66 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * **
3488 AGTGCTAGCACCCATCGCAC-TCATGTGCGCACACCTCCCACCCCCCAATCACCGGAACCCCAAT
131 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAAT
* * * *
3552 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGAAGGTGCCCCAGGCAAAAAAAAAAATGCGGC
196 GCCGTCGGTCAGGTTCTCCGACGATGCT-AGTCGATGGTGCCCCAGGC--AAAAAAAAATGCGGC
* * *
3617 ACCAGCACATGCTCGAGCCCAGCATGTGCACCCGC-AACCCTCGATCCGATCCGATCTTACACTG
258 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGCTAACCCTCGGTCCGATCTGATCTTACACTG
* * *
3681 GGAATGAACTCAATATGCTTAGACTGGGAATGAACTCCATATGCCTATGTCAACCCACGAAATGA
323 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
3746 GCGTG
388 GCGTG
3751 CGGGCGCTTA
Statistics
Matches: 1891, Mismatches: 226, Indels: 111
0.85 0.10 0.05
Matches are distributed among these distances:
880 11 0.01
881 470 0.25
882 112 0.06
883 67 0.04
884 126 0.07
885 62 0.03
886 198 0.10
887 1 0.00
888 32 0.02
889 119 0.06
890 344 0.18
891 7 0.00
892 40 0.02
893 71 0.04
894 34 0.02
901 1 0.00
904 1 0.00
906 1 0.00
907 40 0.02
908 2 0.00
912 152 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAAT
GCCGTCGGTCAGGTTCTCCGACGATGCTAGTCGATGGTGCCCCAGGCAAAAAAAAATGCGGCACC
AGCACATGCCCGAGCCCAGCATGTGCACCCGCTAACCCTCGGTCCGATCTGATCTTACACTGGGA
ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCG
TGACTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCGGGGATTGATCGGGTCCCCCCTGCGTGCT
GCCAATCCTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
TAAGCCAATCGACGAAACGAGCAGGCGGGCGGGCACTATGCCGGCCAGAGAGGCGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAAATTTTA
TCAGAAGCAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
ACAATTCAGCTAAAAACTCAAAGTGTACAGATTTTGTGACCAT
Found at i:3708 original size:26 final size:26
Alignment explanation
Indices: 3672--3724 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
3662 CCGATCCGAT
3672 CTTACACTGGGAATGAACTCAATATG
1 CTTACACTGGGAATGAACTCAATATG
* *
3698 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCAATATG
3724 C
1 C
3725 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCAATATG
Found at i:11544 original size:26 final size:26
Alignment explanation
Indices: 11515--11565 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
11505 TCGGTCCGAT
*
11515 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
11541 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTAGGAATGAACTCCGTAT
11566 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:13307 original size:26 final size:26
Alignment explanation
Indices: 13278--13330 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13268 CCGATCTGAT
13278 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
13304 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
13330 C
1 C
13331 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15097 original size:26 final size:26
Alignment explanation
Indices: 15061--15113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15051 CTAGTCCGAT
*
15061 CTTACACTGGGAATTAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* *
15087 CTTAGACTGGGAATGAACTTCATATG
1 CTTACACTGGGAATGAACTCCATATG
15113 C
1 C
15114 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:15837 original size:897 final size:895
Alignment explanation
Indices: 11212--16881 Score: 7191
Period size: 897 Copynumber: 6.4 Consensus size: 895
11202 GAGTTTTTTA
* *
11212 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAATCCTATAAAATCTCAAAT
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
11277 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAG
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* *
11342 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGCCCCACCCCTAATCGTCGGAACCCCA
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCC-CCCC-AATCGTCGGAACCCCA
* * ** ** ** * *
11407 ATGTCGTCAATCAGGTTCT-C--CG--G-T-----GATGGTGCCCTAAG-TGAAAAAAATGTGAC
192 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAAATGCGGC
** * *
11460 ACCAGCACATGTTCGAGCCCAGCATGTGCACCCGTAACCCTCGGT-TCGGTCCGATCTTACACTA
257 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCT-AGTCCGATCTTACACTG
* * * * *
11524 GGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATCCCTAAGTCAACCCACGGAATGA
321 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *
11589 GCGTAC-GGTCGCTTAGTCAACCAGAGGGGCAGGATGCGCAAGCTGGGGATTGATCGAGTCCTCC
386 GCGTGCGGGT-GCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCC
* * ** * * * * *
11653 CTACGTGCCGCCTATCCTACTGCCGCAACCCTC-AGTCTGGTCTAATCTTAGACTGGGAAGGAAC
450 CTGCATGCTACCAATCCTGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAAC
** * * * * * *
11717 TCCATATGCCTAAGCCAACCGACGAAATGACCGGGCGGGTGGCCACTACGTCGGCCAGAGAGGCG
514 TCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCG
* * *
11782 GGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCCA
579 GGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
11847 TGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTCATGTGAAGTTT
644 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
* * * * *
11912 CATGGCAAGACGACTCATTTTTTTATTTTTCATGACTTTCGAAACTTTTTACGGTTTGGGATTTT
709 CATGGCAAGACGACT-AGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* * *
11977 TTTAAAATTTTTT-AGAAGGTGTTTTGGCCCCAAACTTGGCAGACGTGATCCTTGTATTTTTGTT
773 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
*
12041 GGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
838 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
* * * * *
12099 GAAAAAAGTGTCCCCATTTCAGACACTTTGACGGCTACTAGTAGCAAACCTGTAAAATCTGAAAT
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
12164 GGTCTTTAAGGGGGTGCGAGTTCTTGAGGTTTGATGAAGGATACGGGGCCAATATAAGGGCCAAG
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* *
12229 TACCAGCACCCATCGCACATCATATGCGCACACCCCCCGGCCCCCCAATGGTCGGAACCCCAATG
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATG
* ** * * ** * * * * *
12294 CTGTTGGTCAGGTTCTTCGACGACGCTCCAACGATGGTGCACCGGGCAAACAAAAATGCAGCACT
195 CCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAAATGCGGCACC
* * * * *
12359 AGCATATGCCCAAGCCCAGCATGTGCACCCGCAACCCTCGGTCCAATCCGATCTTACACTGGGAA
260 AGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTAGTCCGATCTTACACTGGGAA
* * *
12424 TGAACTCCGTATGC-----CT---AA-G----TC--A-ACC-AA-TGAA---ATG-AAC-A---T
325 TGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * *
12463 GCGGGTGCTCAGCCAGCCCGAGGGGCAGGATGCGTAAGCCGAGGATTGGTCGGGTCCCCCCTGCA
390 GCGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCCTGCA
* * * *
12528 TGCTACCGATCCTGCTGCCACAACCGTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTTTCT
455 TGCTACCAATCCTGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
*
12592 ATGCCTAAGCCAACCGACGAAA-GA---GGCGGGCGGGGACTACGCC-AGCCAGAGAGGCGGGAT
519 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGGCGGGAT
* * *
12652 GTGCAAGCCATGGATCGATAGGG-GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGACATGCC
583 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
12716 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
648 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * ** * *
12781 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATGCTTTTTA
713 GCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGAT-TTTTTTA
*
12846 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
777 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
12911 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
842 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
* * *
12965 GAAATAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAAT
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
13030 GCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAG
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAG
* * * * *
13095 TACCAGCACCCATTGCACATCATGTCCGCACACCCCCTCGCCCCCCCAGTCGCCGGAACCCCAAT
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCAATCGTCGGAACCCCAAT
* * *
13160 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTCG-GCGAAAAAAAATACGGCA
194 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC-CGAGCAAAAAAAAATGCGGCA
* * * * * * * *
13224 CCAGCACAAGCCCAAGCCCAGTATGTGCAGCTGCAACCCTCGGTC-CGATCTGATCTTACACTGG
258 CCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTAG-TCCGATCTTACACTGG
* ** *
13288 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTGACGAAACAAG
322 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * *
13353 CGTGCGGGCT-CTCAGCCAGCTAGAGGGGCAGGATGCACAAGCCAGGGATTGATCGGGTCCCCTC
387 CGTGCGGG-TGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCC
** ** * * * *
13417 TGTGTGCT-GTAGATCTTGCTACCGCAACCCTCAATCTGGTCTGATCTTAGACTGGGAATGAACT
451 TGCATGCTACCA-ATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACT
* * * *
13481 CCGTATGCCAAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGG
515 CTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGG
* * *
13546 GATGCGCAAGCC-GGAGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTCTTCATACTTCTGCCA
580 GATGCGCAAGCCATG-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
* *
13610 TGCCAATGCCATTTTTATGGCATGTGAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
644 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
** * *
13675 CATGGCAAGACGACCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAAGGTTCAGGATTTTT
709 CATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTT
* *
13740 TTTAAAATTTTTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
773 TTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * * *
13805 GACATGCACAAAAAAATTCAGCTGAAAACTCGAAGTGTACAGCATTTTGTGACCATAT
838 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
* *
13863 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCATCAAACCTATAAAATCTCAAAT
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
13928 GCTATTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCAATATAAGGGCCAAGT
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
* ** *
13993 ACCAGCACCCATCACACATCATGTGCGCACA-CCCCC-G------AATCACCGAAACCCCAATGC
131 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGC
* * ** * * * *
14050 CGCC-TTTAGGTTCTCCGGTGATGCTTCGACGATGGTGCCCCGGGCAAAAAAAGAATGCGGCACA
196 CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAA-AATGCGGCACC
* * * * * ** *
14114 AGCACAAGCCTGAGCCCAGCATGTGCACCCGTAATCCTCAGTC-CGATCTAATGTTACACTGGGA
260 AGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTAG-TCCGATCTTACACTGGGA
* * *
14178 ATGAACTCGGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTG
324 ATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
14243 TGCGGGCGCTCAGACGGCCAGAGGGGCAGGATGTGCAACCCGAGGATCGGTCGGGTCCCCTCCTA
389 TGCGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCC-CCTG
** ** * * * **
14308 TGTGCTACTGATCCTACTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCTG
453 CATGCTACCAATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTG
* * * * *
14373 TATGCCTAAGCCAACTGACGAAACGAGCGGACGGGCGGGCACTACGTCTACTAGAGAGGCGGGAT
518 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGAT
* * **
14438 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTTTGCTGTGCC
583 GCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
* *
14503 AATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATG
648 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATG
* * *
14568 GCAAGATGACTCA-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGCTCGAGATTTTTTTA
713 GCAAGACGACT-AGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTA
* *
14632 AAATTTTTTCAAAAGGAGTTTTGGCCCC--A-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
777 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
* * *
14694 TGCATAAAAAAATTCAGCGAAAAACTCGAAGTGTACAGGATTTTATGACCATTT
842 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
* * * *
14748 GAAAAAAGTGTCTCGATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAAA
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
14813 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATGGGGGGCCAATATAAGGGCCAAG
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGGGCCAAG
* *
14878 TACCAGCACCCATCGCACATCATGTGCACACACCCCTCCGCCCCCCCAATCGTCGGAACCCCAAT
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCAATCGTCGGAACCCCAAT
* * * *
14943 GCTGCCGGTCAGGTTCTCAGACGATGCTCCGGTGATAGTGCCCCGAGCAAAAAAAAATGCGGCAC
194 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAAATGCGGCAC
* * * *
15008 CAGCACATGCCCGAGCCTAGCATGTCCACCCATAACCCTTGGTCTAGTCCGATCTTACACTGGGA
259 CAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTAGTCCGATCTTACACTGGGA
* * *
15073 ATTAACTCCATATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGCG
324 ATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCG
* *
15138 TGTGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGCCGGGTCCCCCCTGC
389 TGCGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCCTGC
* * *
15203 ATGCTACCAATCCTGCTACCGCAACCCTCGATCGGGTCTGATCTTAGACTGGGAATGAACTCTGT
454 ATGCTACCAATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGT
* * * *
15268 ATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGAGCTCTACGCCGACCAGAGAGGCAGGATG
519 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATG
* * * **
15333 CGCAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGTGA
584 CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCA
** * * * * *
15398 ATGCCATTTTTATTACTCGTAAATTCATATAATTGTCCCTTAAGCTTTCATGTGAAGTTTCTTGG
649 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGG
*
15463 CAAGA-GAAATAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAA
714 CAAGACG-ACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAA
* * *
15527 AATTTTTTTAGAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCTT
778 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
15592 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
843 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
15645 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
15710 GCTGTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAGGAGGCCAATATAAGGGCCAAG
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG-GGCCAATATAAGGGCCAAG
*
15775 TACCAGCACCCATCGCACATCTTGTGCGCACACCCCGCCGGCCCCCCAATCGTCGGAACCCCAAT
130 TACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCAATCGTCGGAACCCCAAT
* * * * * *
15840 GCCGTCAGTCAGGTTCTCCGATGATGCTCTGGCGATGGTGCCTCGGGCAAAAAAAATAT--GGCA
194 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAA-ATGCGGCA
* * * * * * * ** *
15903 CCAGCATATGCTCGAGCCTAGTATGCGCACCAGCAACCCTCGGTCCGGTTCGATCTTACACTGGG
258 CCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTAGTCCGATCTTACACTGGG
* * * *
15968 AATGAACTCCGTATGGTTAGA-TCGGGAATGAACTTCGTATGCCTAAGTTAACCCATGAAACAAG
323 AATGAACTCCGTATGCTTAGACT-GGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * ** * *
16032 CGTGCGGTTGCTCAACCGGCCAGAGGGGTAGGATGCGTAAGTGGGGGATCGGACGGGTCCCCCC-
387 CGTGCGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCCT
* * ** * *
16096 -CA-G--------CGTGCTGTCACAACCCTCGATC-CATCAGATCTTAGACTGGGTATGAACT-T
452 GCATGCTACCAATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCT
* * * *
16149 CGTGTGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCTGGCCAGAGAGGCGGG
517 -GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGG
16214 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
581 ATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* *
16279 CTAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
646 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA
* * * *
16344 TGGCAAG-CGACTCGTTTTCTACTTTTCACGATTTTTGAAACCTTTTACGGTTCGGGA-TTTTTT
711 TGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTT
* * * * *
16407 AAGATTTTTTCAGAAGAATTTTTGGCCCCAAACTTGGTAAACGTGATCCTTGTATTTTTATTGGC
776 AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
* * *
16472 ATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACAGGATTTTGTAACCATTT
841 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
16527 GAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
1 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
16591 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATG
66 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAG
* * * * * * *
16656 TACCCGCACCCATCAG-AAATCATGTACGCACACCCCCGCCGCCCCTCTAATCGTCGGAGCCCTA
130 TACCAGCACCCATC-GCACATCATGTGCGCACACCCCC-CGGCCCC-CCAATCGTCGGAACCCCA
* * * * *
16720 TTGCCGCCAGTCAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCAAGCAAAAAAAAATGCGGC
192 ATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAAATGCGGC
*** * *
16785 ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGT-TCAGTCCAATCTTACACTA
257 ACCAGCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCT-AGTCCGATCTTACACTG
* *
16849 GGAATGAACTCCATATGCTTAGATTGGGAATGA
321 GGAATGAACTCCGTATGCTTAGACTGGGAATGA
16882 TCTCTGTATG
Statistics
Matches: 4159, Mismatches: 529, Indels: 194
0.85 0.11 0.04
Matches are distributed among these distances:
864 38 0.01
865 127 0.03
866 304 0.07
867 145 0.03
868 2 0.00
869 2 0.00
870 124 0.03
871 3 0.00
872 2 0.00
873 1 0.00
874 2 0.00
875 4 0.00
876 1 0.00
878 3 0.00
879 2 0.00
880 4 0.00
881 150 0.04
882 194 0.05
883 127 0.03
884 236 0.06
885 202 0.05
886 55 0.01
887 199 0.05
888 230 0.06
889 281 0.07
890 4 0.00
891 2 0.00
893 129 0.03
894 314 0.08
895 202 0.05
896 292 0.07
897 410 0.10
898 367 0.09
899 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGAGCAAAAAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCACCCGTAACCCTCGGTCTAGTCCGATCTTACACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGTGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCCTGCAT
GCTACCAATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCG
CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAAT
GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCA
AGACGACTAGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAAT
TTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
Found at i:16869 original size:26 final size:26
Alignment explanation
Indices: 16840--16918 Score: 104
Period size: 26 Copynumber: 3.0 Consensus size: 26
16830 TCAGTCCAAT
* * *
16840 CTTACACTAGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* * *
16866 CTTAGATTGGGAATGATCTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
16918 C
1 C
16919 CTAAGTCAAC
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.