genome.fa.s63.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167888.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_155, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64109

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2638--2917	145	1.9	144	82	5	350	42	10	13	33	1.78
3502--3826	96	3.4	95	88	2	454	35	14	17	32	1.90
4549--4824	44	6.5	42	76	8	222	34	12	15	37	1.85
4549--5016	41	11.2	41	72	10	270	33	12	17	35	1.88
4742--4770	15	1.9	15	100	0	58	48	13	17	20	1.81
4595--5016	85	5.1	84	76	7	353	34	12	17	36	1.87
4843--4986	44	3.3	43	79	9	159	31	13	19	36	1.90
4721--5017	164	1.8	164	83	4	402	35	13	16	35	1.87
4993--5061	15	4.6	15	100	0	138	46	13	20	20	1.83
5020--5069	15	2.7	20	74	25	56	46	14	20	20	1.84
6143--6187	21	2.1	22	84	12	58	6	15	0	77	0.96
17904--17941	18	2.1	19	90	9	62	42	0	5	52	1.24
17903--17946	17	2.6	16	80	19	54	38	0	6	54	1.27
22167--22214	24	2.0	24	83	0	60	22	4	8	64	1.38
23719--23957	132	1.8	131	83	4	320	26	11	12	49	1.73
24724--24761	15	2.6	15	83	4	51	84	0	13	2	0.73
26030--26070	12	3.4	12	86	0	55	53	2	14	29	1.54
33029--33074	20	2.4	19	81	3	56	71	8	10	8	1.30
35865--35891	2	13.5	2	100	0	54	51	48	0	0	1.00
36664--36753	45	2.0	45	81	12	105	45	3	10	41	1.54
38302--38377	32	2.4	32	84	2	91	32	5	15	46	1.69
40760--40787	2	14.0	2	100	0	56	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42560--42589	16	1.9	15	93	6	51	0	0	50	50	1.00
45077--45141	26	2.6	26	76	13	64	23	1	10	64	1.33
50575--50625	13	3.9	13	82	12	61	31	0	1	66	1.03
50576--50625	19	2.6	19	72	27	52	32	0	2	66	1.03
52750--52811	18	3.4	19	67	24	53	56	0	0	43	0.99
56965--57080	31	3.8	31	83	2	121	11	29	5	54	1.57
56973--57086	61	1.9	61	89	3	178	10	27	5	57	1.54

Tables:   1

The End!