Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168455.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_666, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20127
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36


Found at i:18317 original size:131 final size:130

Alignment explanation


    Indices: 18083--18343  Score: 450
    Period size: 131  Copynumber: 2.0  Consensus size: 130

      18073 CACTCACAAA

                     *                        *                              
      18083 CTCAAATTTTTTTTCGCAAACCAAATGAAAATTATTTTTTTAATAAGTTTTAATTAATTTTAAAA
          1 CTCAAATTTGTTTTCGCAAACCAAATGAAAATTACTTTTTTAATAAGTTTTAATTAATTTTAAAA

                    *                                     *         *        
      18148 TCTTATTACGAATATAAATTTTTTTAAGTGACCAATCACATCTAGCTAAAAATATTTGTGGCTGC
         66 TCTTATTAAGAATATAAATTTTTTTAAGTGACCAATCACATCTAGCCAAAAA-ATTGGTGGCTGC

             
      18213 T
        130 T

                                             *                               
      18214 CTCAAATTTGTTTTCGCAAACCAAATGAAAATTGCTTTTTTAATAAGTTTTAATTAATTTTAAAA
          1 CTCAAATTTGTTTTCGCAAACCAAATGAAAATTACTTTTTTAATAAGTTTTAATTAATTTTAAAA

                                      *                                      
      18279 TCTTATTAAGAATATAAATTTTTTTATGTGACCAATCACATCTAGCCAAAAAATTGGTGGCTGCT
         66 TCTTATTAAGAATATAAATTTTTTTAAGTGACCAATCACATCTAGCCAAAAAATTGGTGGCTGCT

      18344 TTCCTTGTTT


Statistics
Matches: 123,  Mismatches: 7, Indels: 1
        0.94            0.05        0.01

Matches are distributed among these distances:
 130   12  0.10
 131  111  0.90

ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41


Consensus pattern (130 bp):   
CTCAAATTTGTTTTCGCAAACCAAATGAAAATTACTTTTTTAATAAGTTTTAATTAATTTTAAAA
TCTTATTAAGAATATAAATTTTTTTAAGTGACCAATCACATCTAGCCAAAAAATTGGTGGCTGCT

Found at i:18524 original size:15 final size:15

Alignment explanation


    Indices: 18501--18534  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

      18491 TAATTAATAT

                      *    
      18501 TTAACTTTGATTTTC
          1 TTAACTTTGACTTTC

                *          
      18516 TTAATTTTGACTTTC
          1 TTAACTTTGACTTTC

                
      18531 TTAA
          1 TTAA

      18535 GAAAAAATGT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.24, C:0.12, G:0.06, T:0.59


Consensus pattern (15 bp):   
TTAACTTTGACTTTC

Found at i:18606 original size:2 final size:2

Alignment explanation


    Indices: 18601--18626  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

      18591 TTATTATGTT

                                                  
      18601 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

      18627 CACATACACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:18637 original size:2 final size:2

Alignment explanation


    Indices: 18626--18665  Score: 62
    Period size: 2  Copynumber: 20.0  Consensus size: 2

      18616 ATATATATAT

                   *           *                                       
      18626 AC AC AT AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

      18666 TTATATACAA


Statistics
Matches: 34,  Mismatches: 4, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.50, C:0.45, G:0.00, T:0.05


Consensus pattern (2 bp):   
AC

Found at i:19042 original size:21 final size:22

Alignment explanation


    Indices: 19012--19063  Score: 81
    Period size: 22  Copynumber: 2.5  Consensus size: 22

      19002 GATATTTTTA

                           *      
      19012 AATA-TTTATA-TTTGAAAAAT
          1 AATATTTTATATTTTAAAAAAT

                                  
      19032 AATATTTTATATTTTAAAAAAT
          1 AATATTTTATATTTTAAAAAAT

                      
      19054 AATATTTTAT
          1 AATATTTTAT

      19064 TAATTTTAGA


Statistics
Matches: 29,  Mismatches: 1, Indels: 2
        0.91            0.03        0.06

Matches are distributed among these distances:
  20    4  0.14
  21    6  0.21
  22   19  0.66

ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50


Consensus pattern (22 bp):   
AATATTTTATATTTTAAAAAAT

Done.