Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NW_019168457.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_668, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 20058
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.34


Found at i:1934 original size:30 final size:30

Alignment explanation


    Indices: 1899--1959  Score: 122
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       1889 TTAAGATGAA

                                          
       1899 TAGGGCTCCTTGAAGGCTACAAATTAAGAG
          1 TAGGGCTCCTTGAAGGCTACAAATTAAGAG

                                          
       1929 TAGGGCTCCTTGAAGGCTACAAATTAAGAG
          1 TAGGGCTCCTTGAAGGCTACAAATTAAGAG

             
       1959 T
          1 T

       1960 TTTAATAGCC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25


Consensus pattern (30 bp):   
TAGGGCTCCTTGAAGGCTACAAATTAAGAG

Found at i:13888 original size:41 final size:40

Alignment explanation


    Indices: 13812--13888  Score: 95
    Period size: 41  Copynumber: 1.9  Consensus size: 40

      13802 TCAAAATGTC

                                          *         
      13812 TAAAAAATTATTTTCTATTTTTGAAAAGAATAATTTTTTT
          1 TAAAAAATTATTTTCTATTTTTGAAAAGAAAAATTTTTTT

                                    *              
      13852 TAAAAAATTACATTTT-TATTTTTTAAAA-ACAAAATTT
          1 TAAAAAATT--ATTTTCTATTTTTGAAAAGA-AAAATTT

      13889 AAAAAGTTTT


Statistics
Matches: 32,  Mismatches: 2, Indels: 5
        0.82            0.05        0.13

Matches are distributed among these distances:
  40   10  0.31
  41   17  0.53
  42    5  0.16

ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49


Consensus pattern (40 bp):   
TAAAAAATTATTTTCTATTTTTGAAAAGAAAAATTTTTTT

Found at i:14792 original size:21 final size:21

Alignment explanation


    Indices: 14759--14805  Score: 60
    Period size: 21  Copynumber: 2.2  Consensus size: 21

      14749 ATAAAAATGC

                *                 
      14759 AATATATTCAAAAAT-CAAATA
          1 AATAAATTCAAAAATACAAA-A

                    *            
      14780 AATAAATTTAAAAATACAAAA
          1 AATAAATTCAAAAATACAAAA

                 
      14801 AATAA
          1 AATAA

      14806 TATCATATAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  21   19  0.83
  22    4  0.17

ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26


Consensus pattern (21 bp):   
AATAAATTCAAAAATACAAAA
Done.