Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168459.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_67, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 134467
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.37
Warning! 1000 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:74308 original size:15 final size:16
Alignment explanation
Indices: 74270--74308 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
74260 TAGAAATGTT
74270 AGAGAAGGCTAAAAAA
1 AGAGAAGGCTAAAAAA
74286 A-AGAAAGG-TAAAAAA
1 AGAG-AAGGCTAAAAAA
74301 AGAGAAGG
1 AGAGAAGG
74309 ACAAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.64, C:0.03, G:0.28, T:0.05
Consensus pattern (16 bp):
AGAGAAGGCTAAAAAA
Found at i:79194 original size:7 final size:8
Alignment explanation
Indices: 79175--79213 Score: 69
Period size: 8 Copynumber: 4.8 Consensus size: 8
79165 ATGCTTGAAA
79175 AAAAAATG
1 AAAAAATG
79183 AAAAAATG
1 AAAAAATG
79191 AAAAAATG
1 AAAAAATG
79199 AAAAAAATG
1 -AAAAAATG
79208 AAAAAA
1 AAAAAA
79214 AAAGTGAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (8 bp):
AAAAAATG
Found at i:79196 original size:17 final size:16
Alignment explanation
Indices: 79175--79213 Score: 69
Period size: 17 Copynumber: 2.4 Consensus size: 16
79165 ATGCTTGAAA
79175 AAAAAATGAAAAAATG
1 AAAAAATGAAAAAATG
79191 AAAAAATGAAAAAAATG
1 AAAAAATG-AAAAAATG
79208 AAAAAA
1 AAAAAA
79214 AAAGTGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 8 0.36
17 14 0.64
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAAAATGAAAAAATG
Found at i:80300 original size:42 final size:41
Alignment explanation
Indices: 80223--80479 Score: 325
Period size: 42 Copynumber: 6.1 Consensus size: 41
80213 ATGATTGTCA
* *
80223 AGGAGTAATTTACTTTTCAAAGTCATGGTGACTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAG
*
80264 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTC-AAAGTCATGGTGCCTCTGTTTAG
80306 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTT-TCAAAGTCATGGTGCCTCTGTTTAG
80348 AGGAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAG
* * * * * *
80389 AGGAGCAATTTATTTTTTCAAAATCGTTGAGCCTCTGATTAG
1 AGGAGCAATTTA-CTTTTCAAAGTCATGGTGCCTCTGTTTAG
* * * *** *
80431 AGGAGCCATTTATGTTTCTCAAAGTCGTTAAGCCTCTGCTTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCATGGTGCCTCTGTTTAG
80474 AGGAGC
1 AGGAGC
80480 TTTGGTTAAA
Statistics
Matches: 197, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
41 54 0.27
42 113 0.57
43 30 0.15
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAG
Found at i:80381 original size:83 final size:82
Alignment explanation
Indices: 80223--80479 Score: 334
Period size: 83 Copynumber: 3.1 Consensus size: 82
80213 ATGATTGTCA
* *
80223 AGGAGTAATTTACTTTTCAAAGTCATGGTGACTCTGTTTAGAGGAGCAATTTACTTTTCAAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-AAAGT
80288 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
80306 AGGAGCAATTTACTTTCTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
1 AGGAGCAATTTACTTT-TCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
*
80371 CATGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* * * * * * * *
80389 AGGAGCAATTTATTTTTTCAAAATCGTTGAGCCTCTGATTAGAGGAGCCATTTATGTTTCTCAAA
1 AGGAGCAATTTA-CTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTT-TCAAA
*** *
80454 GTCGTTAAGCCTCTGCTTAG
63 GTCGTGGTGCCTCTGTTTAG
80474 AGGAGC
1 AGGAGC
80480 TTTGGTTAAA
Statistics
Matches: 154, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
83 80 0.52
84 48 0.31
85 26 0.17
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTACTTTTCAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:80501 original size:9 final size:9
Alignment explanation
Indices: 80487--80533 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
80477 AGCTTTGGTT
80487 AAAAACAAA
1 AAAAACAAA
*
80496 AAAAACTAA
1 AAAAACAAA
*
80505 AAAAATAAA
1 AAAAACAAA
80514 AAAAA-ATAA
1 AAAAACA-AA
*
80523 AAAAATAAA
1 AAAAACAAA
80532 AA
1 AA
80534 TATCGAGTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
8 1 0.03
9 31 0.94
10 1 0.03
ACGTcount: A:0.87, C:0.04, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAACAAA
Found at i:80514 original size:7 final size:8
Alignment explanation
Indices: 80486--80533 Score: 53
Period size: 8 Copynumber: 5.8 Consensus size: 8
80476 GAGCTTTGGT
80486 TAAAAACAA
1 TAAAAA-AA
*
80495 -AAAAAAC
1 TAAAAAAA
80502 TAAAAAAA
1 TAAAAAAA
80510 TAAAAAAAAA
1 T--AAAAAAA
80520 TAAAAAAA
1 TAAAAAAA
80528 TAAAAA
1 TAAAAA
80534 TATCGAGTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
7 1 0.03
8 25 0.74
10 8 0.24
ACGTcount: A:0.85, C:0.04, G:0.00, T:0.10
Consensus pattern (8 bp):
TAAAAAAA
Found at i:80514 original size:18 final size:18
Alignment explanation
Indices: 80487--80533 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 18
80477 AGCTTTGGTT
* *
80487 AAAAACAAAAAAAACTAA
1 AAAAATAAAAAAAAATAA
80505 AAAAATAAAAAAAAATAA
1 AAAAATAAAAAAAAATAA
80523 AAAAATAAAAA
1 AAAAATAAAAA
80534 TATCGAGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.87, C:0.04, G:0.00, T:0.09
Consensus pattern (18 bp):
AAAAATAAAAAAAAATAA
Found at i:80696 original size:7 final size:6
Alignment explanation
Indices: 80680--80726 Score: 53
Period size: 6 Copynumber: 7.8 Consensus size: 6
80670 CCCAATTTGG
*
80680 TTTTTA TTTTGTA -TTTTA -TATTA TTTTTA TTTTTA TTTTATA TTTTT
1 TTTTTA TTTT-TA TTTTTA TTTTTA TTTTTA TTTTTA TTTT-TA TTTTT
80727 TTCCTTTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
5 6 0.17
6 22 0.61
7 8 0.22
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:80716 original size:22 final size:22
Alignment explanation
Indices: 80680--80742 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
80670 CCCAATTTGG
80680 TTTTTATTTTGTATTTTATATT
1 TTTTTATTTTGTATTTTATATT
80702 ATTTTTATTTT-TATTTTATATT
1 -TTTTTATTTTGTATTTTATATT
** *
80724 TTTTTCCTTTGTATCTTAT
1 TTTTTATTTTGTATTTTAT
80743 GTATTTATTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.22
22 18 0.50
23 10 0.28
ACGTcount: A:0.17, C:0.05, G:0.03, T:0.75
Consensus pattern (22 bp):
TTTTTATTTTGTATTTTATATT
Found at i:80720 original size:17 final size:16
Alignment explanation
Indices: 80681--80725 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 16
80671 CCAATTTGGT
80681 TTTTATTTTGTATTTTA
1 TTTTATTTT-TATTTTA
*
80698 TATTATTTTTATTTTTA
1 TTTTATTTTTA-TTTTA
80715 TTTTATATTTT
1 TTTTAT-TTTT
80726 TTTCCTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 2 0.08
17 18 0.75
18 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTATTTTTATTTTA
Found at i:80792 original size:4 final size:4
Alignment explanation
Indices: 80783--80873 Score: 51
Period size: 4 Copynumber: 22.0 Consensus size: 4
80773 TATGTAAATC
* * * * *
80783 TTTA TTTA TTTA TTTA TTTT TTTC TGTTA -ATA TTTA TATA TGTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA -TTTA
* * *
80832 TTTA TCTA GTTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA
80874 CTATTATTAT
Statistics
Matches: 67, Mismatches: 14, Indels: 12
0.72 0.15 0.13
Matches are distributed among these distances:
3 5 0.07
4 47 0.70
5 12 0.18
6 3 0.04
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:80816 original size:28 final size:32
Alignment explanation
Indices: 80785--80870 Score: 83
Period size: 28 Copynumber: 2.7 Consensus size: 32
80775 TGTAAATCTT
80785 TATTTATTTATTTATTT-TTT-TCT-GTTA-A
1 TATTTATTTATTTATTTATTTATCTAGTTATA
* *
80813 TATTTATATATGTATTTTATTTATCTAGTTATA
1 TATTTATTTATTTA-TTTATTTATCTAGTTATA
80846 TATTTA-TTATTATATTATAATTTAT
1 TATTTATTTATT-TATT-T-ATTTAT
80871 TTACTATTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
28 12 0.26
29 3 0.07
30 3 0.07
31 3 0.07
32 9 0.20
33 10 0.22
34 6 0.13
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (32 bp):
TATTTATTTATTTATTTATTTATCTAGTTATA
Found at i:80891 original size:22 final size:22
Alignment explanation
Indices: 80866--80933 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 22
80856 TATATTATAA
80866 TTTATTTACTATTATTATTTTT
1 TTTATTTACTATTATTATTTTT
* * * * *
80888 TTTATTCA-TCTTGTAATATTT
1 TTTATTTACTATTATTATTTTT
80909 TTTATTTATCTTATTATTATTTTT
1 TTTATTTA-C-TATTATTATTTTT
80933 T
1 T
80934 AATTATCTGT
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
21 16 0.48
22 7 0.21
24 10 0.30
ACGTcount: A:0.22, C:0.06, G:0.01, T:0.71
Consensus pattern (22 bp):
TTTATTTACTATTATTATTTTT
Found at i:80934 original size:22 final size:22
Alignment explanation
Indices: 80866--80941 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 22
80856 TATATTATAA
*
80866 TTTATTTACTATTATTATT-TTT
1 TTTATTTA-TCTTATTATTATTT
* * *
80888 TTTATTCATCTT-GTAATATTT
1 TTTATTTATCTTATTATTATTT
80909 TTTATTTATCTTATTATTATTT
1 TTTATTTATCTTATTATTATTT
*
80931 TTTAATTATCT
1 TTTATTTATCT
80942 GTTAATTTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
20 3 0.07
21 17 0.39
22 24 0.55
ACGTcount: A:0.24, C:0.07, G:0.01, T:0.68
Consensus pattern (22 bp):
TTTATTTATCTTATTATTATTT
Found at i:80934 original size:43 final size:43
Alignment explanation
Indices: 80866--80956 Score: 116
Period size: 43 Copynumber: 2.1 Consensus size: 43
80856 TATATTATAA
80866 TTTATTTACTATTATTATTTTTTTT-ATTCATCT-TGTAATATTT
1 TTTATTTACTATTATTATTTTTTTTAATT-ATCTGT-TAATATTT
* *
80909 TTTATTTA-TCTTATTATTATTTTTTAATTATCTGTTAATTTTT
1 TTTATTTACTATTATTATT-TTTTTTAATTATCTGTTAATATTT
80952 TTTAT
1 TTTAT
80957 ATTCGTTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
42 9 0.21
43 30 0.70
44 4 0.09
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.69
Consensus pattern (43 bp):
TTTATTTACTATTATTATTTTTTTTAATTATCTGTTAATATTT
Found at i:80953 original size:22 final size:22
Alignment explanation
Indices: 80879--80955 Score: 70
Period size: 22 Copynumber: 3.5 Consensus size: 22
80869 ATTTACTATT
* *
80879 ATTATTTTTTTTATTCATCTTGTA
1 ATTA-TTTTTTAATT-ATCTTATA
* *
80903 A-TATTTTTTATTTATCTTATT
1 ATTATTTTTTAATTATCTTATA
80924 ATTATTTTTTAATTATCTGT-TA
1 ATTATTTTTTAATTATCT-TATA
80946 ATT-TTTTTTA
1 ATTATTTTTTA
80956 TATTCGTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
21 14 0.31
22 27 0.60
23 3 0.07
24 1 0.02
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (22 bp):
ATTATTTTTTAATTATCTTATA
Found at i:80981 original size:18 final size:19
Alignment explanation
Indices: 80958--80996 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
80948 TTTTTTTATA
80958 TTCGTTTATCTGATTT-TT
1 TTCGTTTATCTGATTTCTT
80976 TTCGTTTATCTGATTTCTT
1 TTCGTTTATCTGATTTCTT
80995 TT
1 TT
80997 TTTTTCTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.10, C:0.13, G:0.10, T:0.67
Consensus pattern (19 bp):
TTCGTTTATCTGATTTCTT
Found at i:81928 original size:17 final size:18
Alignment explanation
Indices: 81906--81943 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
81896 TTTAATATTC
81906 TTTTATCTTTGTTTTA-T
1 TTTTATCTTTGTTTTACT
*
81923 TTTTATTTTTGTTTTACT
1 TTTTATCTTTGTTTTACT
81941 TTT
1 TTT
81944 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.11, C:0.05, G:0.05, T:0.79
Consensus pattern (18 bp):
TTTTATCTTTGTTTTACT
Found at i:81931 original size:11 final size:11
Alignment explanation
Indices: 81869--81972 Score: 50
Period size: 11 Copynumber: 9.2 Consensus size: 11
81859 AATTAATTTA
*
81869 TTTATTTGTTTT
1 TTTATTT-TATT
**
81881 TTTATTTTAAG
1 TTTATTTTATT
*
81892 TTTA-TTTAAT
1 TTTATTTTATT
* * *
81902 ATTCTTTTATC
1 TTTATTTTATT
*
81913 TTTGTTTTATT
1 TTTATTTTATT
81924 TTTATTTT-TGT
1 TTTATTTTAT-T
*
81935 TTTACTTTTCTT
1 TTTA-TTTTATT
*
81947 TATTTTTTTATT
1 T-TTATTTTATT
*
81959 TTCACTTTTATT
1 TTTA-TTTTATT
81971 TT
1 TT
81973 GTTATTTTCT
Statistics
Matches: 70, Mismatches: 16, Indels: 12
0.71 0.16 0.12
Matches are distributed among these distances:
10 8 0.11
11 30 0.43
12 29 0.41
13 3 0.04
ACGTcount: A:0.15, C:0.06, G:0.04, T:0.75
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:81977 original size:28 final size:27
Alignment explanation
Indices: 81905--81985 Score: 74
Period size: 29 Copynumber: 2.8 Consensus size: 27
81895 ATTTAATATT
*
81905 CTTTTATCTTTGTT-TTATTTTTATTTTT
1 CTTTTAT-TTTGTTATT-TTTTTATTTTA
* *
81933 GTTTTACTTTTCTTTATTTTTTTATTTTCA
1 CTTTTA-TTTT-GTTATTTTTTTATTTT-A
81963 CTTTTATTTTGTTATTTTCTTTA
1 CTTTTATTTTGTTATTTT-TTTA
81986 AATAAAATAA
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 15 0.35
29 21 0.49
30 7 0.16
ACGTcount: A:0.12, C:0.09, G:0.04, T:0.75
Consensus pattern (27 bp):
CTTTTATTTTGTTATTTTTTTATTTTA
Found at i:82077 original size:59 final size:58
Alignment explanation
Indices: 82006--82508 Score: 602
Period size: 59 Copynumber: 8.6 Consensus size: 58
81996 AAAATACATA
* * *
82006 GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAA-TTTTCAAAAAACG
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAAAAAA-T
* *
82064 GTTTCTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAT
1 GTTT-TTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTTCAAAAAAT
* * *
82124 ATTTTTGGGGAAAAGTTGAAAATATCAATTCTCCTTAAAAATAAA-TTTTCAAAAAATTT
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAAAAAA--T
* * * * *
82183 TTTTTTGAGGAAAAGTTTAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAAT
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAGTTTTCAAAAAAT
* * * *
82242 ATTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAA-TTTTCAAAAAAAG
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTC-AAAAAAT
* ** * *
82300 GTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAAT
1 G-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAAAAAAT
* * *
82359 ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTTCAAAAAAAG
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTC-AAAAAAT
* * * *
82417 GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTTTCCAAAAAT
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAG-TTTTCAAAAAAT
* *
82476 -ATTTTGGGGAAAAGTTAAAAGTATCAATTTTCC
1 GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
82509 CTGCACAAAA
Statistics
Matches: 380, Mismatches: 52, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
57 18 0.05
58 131 0.34
59 193 0.51
60 18 0.05
61 20 0.05
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (58 bp):
GTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTTTTCAAAAAAT
Found at i:82141 original size:118 final size:117
Alignment explanation
Indices: 82007--82508 Score: 785
Period size: 118 Copynumber: 4.3 Consensus size: 117
81997 AAATACATAG
* * * *
82007 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTAAAAATAAATTTTCAAAAAACGGTTTCTTG
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTTG
*
82072 GGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATA
66 AGGAAAAGTTGAAAGTATCAATTTTCCTTG-AAATCAAAGTTTCCAAAAAATA
* * ***
82125 TTTTTGGGGAAAAGTTGAAAATATCAATTCTCCTTAAAAATAAATTTTCAAAAAATTTTTTTTTG
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTTG
*
82190 AGGAAAAGTTTAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAAAAATA
66 AGGAAAAGTTGAAAGTATCAATTTTCCTTG-AAATCAAAGTTTCCAAAAAATA
* *
82243 TTTTTGGGAAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTTG
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTTG
* *
82308 AGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCCAAAAAATA
66 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATCAAAGTTTCCAAAAAATA
*
82360 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAAAGG-TTTTTG
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTTG
*
82424 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATTAAAGTTTTTCC-AAAAATA
66 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATCAAAG--TTTCCAAAAAATA
*
82477 -TTTTGGGGAAAAGTTAAAAGTATCAATTTTCC
1 TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
82509 CTGCACAAAA
Statistics
Matches: 359, Mismatches: 23, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
116 75 0.21
117 83 0.23
118 201 0.56
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (117 bp):
TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAGGTTTTTTG
AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAATCAAAGTTTCCAAAAAATA
Found at i:83572 original size:19 final size:18
Alignment explanation
Indices: 83546--83613 Score: 66
Period size: 18 Copynumber: 3.7 Consensus size: 18
83536 ATAACGAGTC
83546 AAAA-GCAAAAATTAAAAA
1 AAAATGCAAAAA-TAAAAA
*
83564 AAAATGCAAAAACAAAAA
1 AAAATGCAAAAATAAAAA
** * *
83582 AAAATTTAAAAATGAAGA
1 AAAATGCAAAAATAAAAA
83600 AAAATGACAAAAAT
1 AAAATG-CAAAAAT
83614 TAGTTTATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 3
0.78 0.16 0.06
Matches are distributed among these distances:
18 27 0.68
19 13 0.32
ACGTcount: A:0.74, C:0.06, G:0.07, T:0.13
Consensus pattern (18 bp):
AAAATGCAAAAATAAAAA
Found at i:83889 original size:19 final size:19
Alignment explanation
Indices: 83836--83890 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
83826 TGGAAACAAG
* *
83836 AAAT-AAAAATTATGAAAA
1 AAATAAAAAATCAAGAAAA
*
83854 AAATCAAAAAAACAAGAAAA
1 AAAT-AAAAAATCAAGAAAA
*
83874 AAATAAAAAATGAAGAA
1 AAATAAAAAATCAAGAA
83891 GCAAAAATAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 4 0.13
19 11 0.37
20 15 0.50
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (19 bp):
AAATAAAAAATCAAGAAAA
Found at i:84036 original size:20 final size:19
Alignment explanation
Indices: 83989--84036 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
83979 AAGCATATGA
*
83989 AAAAATAAGTAAAGAAAAAG
1 AAAAA-AAGTAAACAAAAAG
* *
84009 AAATAAAGTTAAACAAAAAT
1 AAAAAAAG-TAAACAAAAAG
84029 AAAAAAAG
1 AAAAAAAG
84037 AAAAAGAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.12
Consensus pattern (19 bp):
AAAAAAAGTAAACAAAAAG
Found at i:84046 original size:20 final size:20
Alignment explanation
Indices: 83999--84047 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 20
83989 AAAAATAAGT
* **
83999 AAAGAAAAAGAAATAAAGTT
1 AAAGAAAAAGAAAAAAAGAA
* *
84019 AAACAAAAATAAAAAAAGAA
1 AAAGAAAAAGAAAAAAAGAA
84039 AAAGAAAAA
1 AAAGAAAAA
84048 ATCTAAAACA
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.80, C:0.02, G:0.10, T:0.08
Consensus pattern (20 bp):
AAAGAAAAAGAAAAAAAGAA
Found at i:84122 original size:7 final size:7
Alignment explanation
Indices: 84110--84194 Score: 64
Period size: 7 Copynumber: 11.9 Consensus size: 7
84100 TAAAGCGAAA
84110 AAAAAAT
1 AAAAAAT
*
84117 AAAAAAC
1 AAAAAAT
84124 AAACAAA-
1 AAA-AAAT
*
84131 AATACAAT
1 AA-AAAAT
*
84139 AAAATAT
1 AAAAAAT
*
84146 AAAAAGT
1 AAAAAAT
84153 AAGAAAAT
1 AA-AAAAT
84161 AAAAAAT
1 AAAAAAT
***
84168 ATTGAAT
1 AAAAAAT
*
84175 CAAAAAT
1 AAAAAAT
84182 AAAAAAT
1 AAAAAAT
84189 AAAAAA
1 AAAAAA
84195 GACAAAAATT
Statistics
Matches: 59, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
7 47 0.80
8 12 0.20
ACGTcount: A:0.76, C:0.05, G:0.04, T:0.15
Consensus pattern (7 bp):
AAAAAAT
Found at i:84202 original size:36 final size:35
Alignment explanation
Indices: 84110--84214 Score: 94
Period size: 36 Copynumber: 3.0 Consensus size: 35
84100 TAAAGCGAAA
*
84110 AAAAAATAAAAAACAAACAAAAATA--CAATAAAATAT
1 AAAAAAT-AAAAA-AAACAAAAATATTGAATAAAA-AT
* *
84146 AAAAAGTAAGAAAATA-AAAAATATTGAATCAAAAAT
1 AAAAAATAA-AAAAAACAAAAATATTGAAT-AAAAAT
*
84182 AAAAAATAAAAAAGAC-AAAA-ATTGAATAAAAAT
1 AAAAAATAAAAAAAACAAAAATATTGAATAAAAAT
84215 TTGAAAAATG
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
33 6 0.10
34 14 0.24
35 13 0.22
36 22 0.37
37 4 0.07
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (35 bp):
AAAAAATAAAAAAAACAAAAATATTGAATAAAAAT
Found at i:84760 original size:15 final size:15
Alignment explanation
Indices: 84716--84768 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
84706 ACAAATTTTT
*
84716 TAAAATATGAATAAAA
1 TAAAATAAGAA-AAAA
84732 -AATAA-AAGAAAAAA
1 TAA-AATAAGAAAAAA
*
84746 TAAAATAAGAGAAAA
1 TAAAATAAGAAAAAA
84761 TAAAATAA
1 TAAAATAA
84769 AATACTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
14 6 0.19
15 24 0.75
16 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (15 bp):
TAAAATAAGAAAAAA
Found at i:84782 original size:61 final size:57
Alignment explanation
Indices: 84725--84836 Score: 129
Period size: 61 Copynumber: 1.9 Consensus size: 57
84715 TTAAAATATG
*
84725 AATAAAAAATAAAAG-AAAAA-ATAAAATAAGAGAAAATAAAATAAAATACTAAAAAAATAAC
1 AATAAAAAAT--AAGCAAAAACAAAAAATAAGAG--AATAAAA-AAAATA-TAAAAAAATAAC
* *
84786 AATTAAAAATAAGCAAAAACAAAAAATTAGAGAATAAAAAAAATATAAAAA
1 AATAAAAAATAAGCAAAAACAAAAAATAAGAGAATAAAAAAAATATAAAAA
84837 GAGAAAATGA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
57 6 0.13
58 6 0.13
59 10 0.22
60 5 0.11
61 19 0.41
ACGTcount: A:0.76, C:0.04, G:0.05, T:0.15
Consensus pattern (57 bp):
AATAAAAAATAAGCAAAAACAAAAAATAAGAGAATAAAAAAAATATAAAAAAATAAC
Found at i:85227 original size:30 final size:31
Alignment explanation
Indices: 85185--85267 Score: 77
Period size: 29 Copynumber: 2.8 Consensus size: 31
85175 ATGAAAATTT
85185 AAATAA-AGAAAGAAATA-AAAAATAAAAATA
1 AAATAAGAGAAAGAAATACAAAAAT-AAAATA
** *
85215 AAATAAGA-AAAG-AATATTAAAGTAAAATA
1 AAATAAGAGAAAGAAATACAAAAATAAAATA
*
85244 AAA-AAGATAAAGAAAATACAAAAA
1 AAATAAGAGAAAG-AAATACAAAAA
85268 GATGAAAAAG
Statistics
Matches: 43, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
28 4 0.09
29 17 0.40
30 14 0.33
31 8 0.19
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.14
Consensus pattern (31 bp):
AAATAAGAGAAAGAAATACAAAAATAAAATA
Found at i:85230 original size:29 final size:30
Alignment explanation
Indices: 85185--85266 Score: 73
Period size: 30 Copynumber: 2.8 Consensus size: 30
85175 ATGAAAATTT
85185 AAATAA-AGAAAGAA-ATAAAAAATAAAAATA
1 AAATAAGAGAAAGAATAT-AAAAAT-AAAATA
* *
85215 AAATAAGA-AAAGAATATTAAAGTAAAATA
1 AAATAAGAGAAAGAATATAAAAATAAAATA
* *
85244 AAA-AAGATAAAGAAAATACAAAA
1 AAATAAGAGAAAGAATATA-AAAA
85267 AGATGAAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
28 4 0.09
29 17 0.40
30 19 0.44
31 3 0.07
ACGTcount: A:0.76, C:0.01, G:0.09, T:0.15
Consensus pattern (30 bp):
AAATAAGAGAAAGAATATAAAAATAAAATA
Found at i:85261 original size:18 final size:20
Alignment explanation
Indices: 85232--85270 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
85222 AAAAGAATAT
85232 TAAAGTAAAATA-AAAAAGA
1 TAAAGTAAAATACAAAAAGA
85251 TAAAG-AAAATACAAAAAGA
1 TAAAGTAAAATACAAAAAGA
85270 T
1 T
85271 GAAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.72, C:0.03, G:0.10, T:0.15
Consensus pattern (20 bp):
TAAAGTAAAATACAAAAAGA
Found at i:85359 original size:20 final size:20
Alignment explanation
Indices: 85334--85371 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
85324 AAAGTAAGAA
85334 AATAAAAAATACAAAAATTG
1 AATAAAAAATACAAAAATTG
* *
85354 AATAAAAATTTCAAAAAT
1 AATAAAAAATACAAAAAT
85372 GAGAAGGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (20 bp):
AATAAAAAATACAAAAATTG
Found at i:85823 original size:11 final size:10
Alignment explanation
Indices: 85788--85824 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
85778 AAAAAATAGC
*
85788 AAAAAAAAAG
1 AAAATAAAAG
85798 AAAATAAAAG
1 AAAATAAAAG
85808 AAAATAAAAG
1 AAAATAAAAG
85818 ATAAATA
1 A-AAATA
85825 TTATACAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 20 0.80
11 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (10 bp):
AAAATAAAAG
Found at i:86298 original size:24 final size:23
Alignment explanation
Indices: 86271--86316 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
86261 AAAATAAACA
86271 AAAGCACAAAATAGAAAAAATAAG
1 AAAGCACAAAAT-GAAAAAATAAG
* **
86295 AAAGTAGGAAATGAAAAAATAA
1 AAAGCACAAAATGAAAAAATAA
86317 CGAGTCAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.70, C:0.04, G:0.15, T:0.11
Consensus pattern (23 bp):
AAAGCACAAAATGAAAAAATAAG
Found at i:86349 original size:16 final size:17
Alignment explanation
Indices: 86329--86395 Score: 73
Period size: 17 Copynumber: 3.9 Consensus size: 17
86319 AGTCAAAAGA
86329 AAAAATAAAAAAAATGC
1 AAAAATAAAAAAAATGC
* *
86346 AAAAACAAAAAAAATTC
1 AAAAATAAAAAAAATGC
86363 AAAAATGAAGAAAAAATG-
1 AAAAAT-AA-AAAAAATGC
* *
86381 ACAAATAGAAAAAAT
1 AAAAATAAAAAAAAT
86396 TTAGTTTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
16 7 0.17
17 21 0.50
18 7 0.17
19 7 0.17
ACGTcount: A:0.75, C:0.06, G:0.07, T:0.12
Consensus pattern (17 bp):
AAAAATAAAAAAAATGC
Found at i:86511 original size:71 final size:71
Alignment explanation
Indices: 86378--86513 Score: 170
Period size: 71 Copynumber: 1.9 Consensus size: 71
86368 TGAAGAAAAA
* * * *
86378 ATGACAAATAGAAAAAATTTAGTTTATAAAATACAAACAAATAATAAGATAAAGATATAAAAAAT
1 ATGACAAATAGAAAAAA-TTAGTTTAGAAAATACAAACAAAAAATAAGATAAAAATAAAAAAAAT
86443 GAAAAGG
65 GAAAAGG
*
86450 ATGACAAAGTAGAAAAAA-TAGTTTAGAAAATAC-AGCAAAAAAGTAATGA-AAAAATAAAAAAA
1 ATGACAAA-TAGAAAAAATTAGTTTAGAAAATACAAACAAAAAA-TAA-GATAAAAATAAAAAAA
86512 AT
63 AT
86514 CACAGATAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
70 7 0.12
71 30 0.54
72 10 0.18
73 9 0.16
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (71 bp):
ATGACAAATAGAAAAAATTAGTTTAGAAAATACAAACAAAAAATAAGATAAAAATAAAAAAAATG
AAAAGG
Found at i:86667 original size:33 final size:33
Alignment explanation
Indices: 86630--86693 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 33
86620 GAAAAAATAA
*
86630 AAAAACAAGAAAAAAAATAAAAA-ATAAAGAAGC
1 AAAAACAAGAAAAAAAACAAAAAGA-AAAGAAGC
* * *
86663 AAAAATATGAAATAAAACAAAAAGAAAAGAA
1 AAAAACAAGAAAAAAAACAAAAAGAAAAGAA
86694 AACTTTATAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.78, C:0.05, G:0.09, T:0.08
Consensus pattern (33 bp):
AAAAACAAGAAAAAAAACAAAAAGAAAAGAAGC
Found at i:86669 original size:21 final size:20
Alignment explanation
Indices: 86621--86660 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
86611 AAAAATTATG
86621 AAAAAATAAAAAA-ACAAGAA
1 AAAAAATAAAAAATA-AAGAA
86641 AAAAAATAAAAAATAAAGAA
1 AAAAAATAAAAAATAAAGAA
86661 GCAAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.85, C:0.03, G:0.05, T:0.07
Consensus pattern (20 bp):
AAAAAATAAAAAATAAAGAA
Found at i:86904 original size:19 final size:20
Alignment explanation
Indices: 86880--86941 Score: 69
Period size: 19 Copynumber: 3.2 Consensus size: 20
86870 AAAAATTTAT
*
86880 GAAAAAATAAATA-AAATAA
1 GAAAAAATAAATACCAATAA
*
86899 GAAAAAAATAAA-AGCAA-AA
1 G-AAAAAATAAATACCAATAA
86918 GAAAAAAT-AATACCAATAA
1 GAAAAAATAAATACCAATAA
86937 GAAAA
1 GAAAA
86942 GAAACAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
17 2 0.05
18 11 0.30
19 12 0.32
20 12 0.32
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.11
Consensus pattern (20 bp):
GAAAAAATAAATACCAATAA
Found at i:86922 original size:18 final size:19
Alignment explanation
Indices: 86880--86941 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 19
86870 AAAAATTTAT
*
86880 GAAAAAATAAATA-AAATAA
1 GAAAAAATAAA-ACCAATAA
*
86899 GAAAAAAATAAAAGCAA-AA
1 G-AAAAAATAAAACCAATAA
*
86918 GAAAAAATAATACCAATAA
1 GAAAAAATAAAACCAATAA
86937 GAAAA
1 GAAAA
86942 GAAACAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
18 13 0.35
19 12 0.32
20 12 0.32
ACGTcount: A:0.76, C:0.05, G:0.08, T:0.11
Consensus pattern (19 bp):
GAAAAAATAAAACCAATAA
Found at i:87370 original size:17 final size:17
Alignment explanation
Indices: 87345--87390 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 17
87335 AAATTTTTAA
87345 AAATGAAAAAATTGAAAC
1 AAATGAAAAAA-TGAAAC
87363 AAAT-AAAAAATGAAAGC
1 AAATGAAAAAATGAAA-C
*
87380 ATATGAAAAAA
1 AAATGAAAAAA
87391 ATAAGCAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 5 0.20
17 10 0.40
18 10 0.40
ACGTcount: A:0.70, C:0.04, G:0.11, T:0.15
Consensus pattern (17 bp):
AAATGAAAAAATGAAAC
Found at i:87386 original size:26 final size:25
Alignment explanation
Indices: 87343--87394 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
87333 AAAAATTTTT
*
87343 AAAAATGAAAAAATTGAAACAAATA
1 AAAAATGAAAAAATTGAAAAAAATA
**
87368 AAAAATGAAAGCATATGAAAAAAATA
1 AAAAATGAAAAAAT-TGAAAAAAATA
87394 A
1 A
87395 GCAAAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.71, C:0.04, G:0.10, T:0.15
Consensus pattern (25 bp):
AAAAATGAAAAAATTGAAAAAAATA
Found at i:87459 original size:12 final size:12
Alignment explanation
Indices: 87442--87503 Score: 56
Period size: 13 Copynumber: 5.0 Consensus size: 12
87432 GCAAAATTAT
*
87442 AAAATAGAACAA
1 AAAATAGAAAAA
87454 AAAATAGCAAAAA
1 AAAATAG-AAAAA
87467 AAAA-AGAAGACAA
1 AAAATAGAA-A-AA
*
87480 AAAATAAGAAAAT
1 AAAAT-AGAAAAA
87493 AAAATA-AAAAA
1 AAAATAGAAAAA
87504 GATTCACAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
11 6 0.14
12 11 0.26
13 20 0.48
14 1 0.02
15 4 0.10
ACGTcount: A:0.79, C:0.05, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAATAGAAAAA
Found at i:87596 original size:15 final size:15
Alignment explanation
Indices: 87552--87604 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
87542 ACAAATTTTT
*
87552 TAAAATATGAATAAAA
1 TAAAATAAGAA-AAAA
87568 -AACAA-AAGAAAAAA
1 TAA-AATAAGAAAAAA
*
87582 TAAAATAAGAGAAAA
1 TAAAATAAGAAAAAA
87597 TAAAATAA
1 TAAAATAA
87605 AATACTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
14 6 0.19
15 24 0.75
16 2 0.06
ACGTcount: A:0.75, C:0.02, G:0.08, T:0.15
Consensus pattern (15 bp):
TAAAATAAGAAAAAA
Found at i:87616 original size:20 final size:18
Alignment explanation
Indices: 87561--87617 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 18
87551 TTAAAATATG
*
87561 AATAAAAAACAAAAGAAAA
1 AATAAAATACAAAA-AAAA
87580 AATAAAATA-AGAGAAAATAA
1 AATAAAATACA-A-AAAA-AA
87600 AATAAAATACTAAAAAAA
1 AATAAAATAC-AAAAAAA
87618 TAACAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
18 1 0.03
19 12 0.38
20 17 0.53
21 1 0.03
22 1 0.03
ACGTcount: A:0.79, C:0.04, G:0.05, T:0.12
Consensus pattern (18 bp):
AATAAAATACAAAAAAAA
Found at i:88227 original size:17 final size:17
Alignment explanation
Indices: 88207--88255 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
88197 AAAATTTTAG
88207 ATTATAAAATACAAAAA
1 ATTATAAAATACAAAAA
* * *
88224 ATTAAAAAATATAACAA
1 ATTATAAAATACAAAAA
* *
88241 ATAATAAGATACAAA
1 ATTATAAAATACAAA
88256 GATATAAAAC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (17 bp):
ATTATAAAATACAAAAA
Found at i:88292 original size:16 final size:15
Alignment explanation
Indices: 88269--88302 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
88259 ATAAAACATC
88269 AAAGATAAAAAATTA
1 AAAGATAAAAAATTA
*
88284 AAAGAATAAAAAGTTA
1 AAAG-ATAAAAAATTA
88300 AAA
1 AAA
88303 CAAAATAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (15 bp):
AAAGATAAAAAATTA
Found at i:88407 original size:27 final size:27
Alignment explanation
Indices: 88377--88439 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
88367 AAAAAAAACC
*
88377 AAAAAA-AAAAAGAAGAAAAAACTTAAG
1 AAAAAATAAAAA-AAGAAAAAAATTAAG
* *
88404 AAAAAATAAAAAATGAAAAAAATTAAT
1 AAAAAATAAAAAAAGAAAAAAATTAAG
*
88431 AGAAAATAA
1 AAAAAATAA
88440 TGTAAATGAC
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 26 0.84
28 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.13
Consensus pattern (27 bp):
AAAAAATAAAAAAAGAAAAAAATTAAG
Found at i:88598 original size:18 final size:17
Alignment explanation
Indices: 88560--88615 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
88550 AAAAGGAATG
* *
88560 AAAATAAAAAAAAAAAGA
1 AAAATAATAAATAAAA-A
88578 AAAATATACTAAATAACAAA
1 AAAATA-A-TAAATAA-AAA
88598 AAAATAATAAATAAAAA
1 AAAATAATAAATAAAAA
88615 A
1 A
88616 TTAAGAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
17 4 0.12
18 13 0.39
19 2 0.06
20 12 0.36
21 2 0.06
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATAATAAATAAAAA
Found at i:89016 original size:140 final size:140
Alignment explanation
Indices: 88872--89128 Score: 442
Period size: 140 Copynumber: 1.8 Consensus size: 140
88862 AACTAGTGTT
88872 ATTATATATAAGCCAATAAAATTCCAAAAGAAAATAACAAAGATAATTATTATCACTTAACAAAT
1 ATTATATATAAGCCAATAAAATTCCAAAAGAAAATAACAAAGATAATTATTATCACTTAACAAAT
** *
88937 TGTATTAAATAAAAGATAAATATTATATGATTCAAAATAATAAATAAAATAACAAGTAATAAATA
66 TGTATTAAATAAAAGATAAATATTATACAATCCAAAATAATAAATAAAATAACAAGTAATAAATA
89002 AATAATTCAA
131 AATAATTCAA
* * * *
89012 ATTATATATAAGGCAATAAATTTCCAAAAGAAAATTACAAAGATAATTATTATCTCTTAACAAAT
1 ATTATATATAAGCCAATAAAATTCCAAAAGAAAATAACAAAGATAATTATTATCACTTAACAAAT
*
89077 TGTATTAAATAAAAGATAAATATTATACAATCCAAAATAGTAAATAAAATAA
66 TGTATTAAATAAAAGATAAATATTATACAATCCAAAATAATAAATAAAATAA
89129 TTCAAATTAT
Statistics
Matches: 109, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
140 109 1.00
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.30
Consensus pattern (140 bp):
ATTATATATAAGCCAATAAAATTCCAAAAGAAAATAACAAAGATAATTATTATCACTTAACAAAT
TGTATTAAATAAAAGATAAATATTATACAATCCAAAATAATAAATAAAATAACAAGTAATAAATA
AATAATTCAA
Found at i:89489 original size:18 final size:16
Alignment explanation
Indices: 89463--89529 Score: 73
Period size: 18 Copynumber: 3.9 Consensus size: 16
89453 ATAACGAGTC
89463 AAAA-GAAAAAATAAAA
1 AAAATGAAAAAA-AAAA
89479 AAAATGCAAAAACAAAAA
1 AAAATG-AAAAA-AAAAA
89497 AAAATGAAAAAAAAAGA
1 AAAATGAAAAAAAAA-A
89514 CAAAATAGAAAAAAAA
1 -AAAAT-GAAAAAAAA
89530 TTAGTTTGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 9
0.83 0.00 0.17
Matches are distributed among these distances:
16 8 0.18
17 7 0.16
18 20 0.44
19 10 0.22
ACGTcount: A:0.82, C:0.04, G:0.07, T:0.06
Consensus pattern (16 bp):
AAAATGAAAAAAAAAA
Found at i:89511 original size:29 final size:28
Alignment explanation
Indices: 89468--89529 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
89458 GAGTCAAAAG
89468 AAAAAATAAAAAAAATG-CAAAA-ACAAA
1 AAAAAATAAAAAAAA-GACAAAATACAAA
*
89495 AAAAAATGAAAAAAAAAGACAAAATAGAAA
1 AAAAAAT--AAAAAAAAGACAAAATACAAA
89525 AAAAA
1 AAAAA
89530 TTAGTTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
27 7 0.23
28 1 0.03
29 13 0.43
30 9 0.30
ACGTcount: A:0.82, C:0.05, G:0.06, T:0.06
Consensus pattern (28 bp):
AAAAAATAAAAAAAAGACAAAATACAAA
Found at i:89530 original size:29 final size:27
Alignment explanation
Indices: 89468--89529 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 27
89458 GAGTCAAAAG
*
89468 AAAAAATAAAAAAAATGCAAAAACAAA
1 AAAAAATAAAAAAAAAGCAAAAACAAA
*
89495 AAAAAATGAAAAAAAAAGACAAAATAGAAA
1 AAAAAAT-AAAAAAAAAG-CAAAA-ACAAA
89525 AAAAA
1 AAAAA
89530 TTAGTTTGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 7 0.23
28 9 0.30
29 5 0.17
30 9 0.30
ACGTcount: A:0.82, C:0.05, G:0.06, T:0.06
Consensus pattern (27 bp):
AAAAAATAAAAAAAAAGCAAAAACAAA
Found at i:89927 original size:16 final size:16
Alignment explanation
Indices: 89908--89940 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
89898 ATAAGTAAAG
89908 AAAAAGAAATAAA-TT
1 AAAAAGAAATAAAGTT
89923 AAAAAGAAATAAAGTT
1 AAAAAGAAATAAAGTT
89939 AA
1 AA
89941 TGAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.73, C:0.00, G:0.09, T:0.18
Consensus pattern (16 bp):
AAAAAGAAATAAAGTT
Found at i:90136 original size:11 final size:11
Alignment explanation
Indices: 90106--90137 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
90096 TAGAAAAGAA
90106 ACAATAAAAA-
1 ACAATAAAAAT
90116 ACAA-AAAAAT
1 ACAATAAAAAT
90126 ACAATAAAAAT
1 ACAATAAAAAT
90137 A
1 A
90138 TAAAAAGTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
9 5 0.25
10 8 0.40
11 7 0.35
ACGTcount: A:0.78, C:0.09, G:0.00, T:0.12
Consensus pattern (11 bp):
ACAATAAAAAT
Found at i:90276 original size:22 final size:23
Alignment explanation
Indices: 90242--90301 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 23
90232 AAATTAGTTT
* * *
90242 AAAA-AATACAAAAAAAATTGA-
1 AAAACAATATAAAAAAAAATAAG
*
90263 AAAAC-ATATAAAAAATAATAAG
1 AAAACAATATAAAAAAAAATAAG
90285 AAAACAATATAAAAAAA
1 AAAACAATATAAAAAAA
90302 TCCAAGACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
21 16 0.52
22 5 0.16
23 10 0.32
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (23 bp):
AAAACAATATAAAAAAAAATAAG
Found at i:90277 original size:23 final size:22
Alignment explanation
Indices: 90242--90301 Score: 63
Period size: 23 Copynumber: 2.8 Consensus size: 22
90232 AAATTAGTTT
* *
90242 AAAA-AATACAAAAAAAAT-TG
1 AAAACAATATAAAAAAAATAAG
90262 AAAA-ACATATAAAAAATAATAAG
1 AAAACA-ATATAAAAAA-AATAAG
90285 AAAACAATATAAAAAAA
1 AAAACAATATAAAAAAA
90302 TCCAAGACAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 5 0.15
21 9 0.26
22 4 0.12
23 15 0.44
24 1 0.03
ACGTcount: A:0.77, C:0.05, G:0.03, T:0.15
Consensus pattern (22 bp):
AAAACAATATAAAAAAAATAAG
Found at i:90537 original size:17 final size:17
Alignment explanation
Indices: 90497--90544 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
90487 AAAAAAGAAT
*
90497 ATAAAAAATTTAAAAAA
1 ATAAAAAATTGAAAAAA
*
90514 ATGAAAAAATTGAAACAA
1 AT-AAAAAATTGAAAAAA
90532 ATAAAAAA-TGAAA
1 ATAAAAAATTGAAA
90545 GCATATGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 5 0.18
17 8 0.29
18 15 0.54
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.19
Consensus pattern (17 bp):
ATAAAAAATTGAAAAAA
Found at i:90729 original size:17 final size:17
Alignment explanation
Indices: 90707--90843 Score: 63
Period size: 17 Copynumber: 8.0 Consensus size: 17
90697 ATATGAATAA
90707 AAAATAAAAGAAAAAAT
1 AAAATAAAAGAAAAAAT
*
90724 AAAAT--AAGAGAAAAT
1 AAAATAAAAGAAAAAAT
* **
90739 AAAATAAAATACTAAA-
1 AAAATAAAAGAAAAAAT
**
90755 AAAATAACAATTAAAAAT
1 AAAATAA-AAGAAAAAAT
* *
90773 AAGCA-AAAACAAAAAAT
1 AA-AATAAAAGAAAAAAT
90790 AAAA-AAGTAAGAAAATAA-
1 AAAATAA--AAGAAAA-AAT
* *
90808 AAAATTAGAGAATAAAA-
1 AAAATAAAAGAA-AAAAT
90825 AAATATAAAAGGAAAAAAT
1 AAA-ATAAAA-GAAAAAAT
90844 GAATAAAAAT
Statistics
Matches: 91, Mismatches: 16, Indels: 24
0.69 0.12 0.18
Matches are distributed among these distances:
15 14 0.15
16 10 0.11
17 36 0.40
18 24 0.26
19 7 0.08
ACGTcount: A:0.75, C:0.03, G:0.07, T:0.15
Consensus pattern (17 bp):
AAAATAAAAGAAAAAAT
Found at i:90737 original size:15 final size:15
Alignment explanation
Indices: 90693--90745 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
90683 ACAAATTTTT
*
90693 TAAAATATGAATAAAA
1 TAAAATAAGAA-AAAA
90709 -AATAA-AAGAAAAAA
1 TAA-AATAAGAAAAAA
*
90723 TAAAATAAGAGAAAA
1 TAAAATAAGAAAAAA
90738 TAAAATAA
1 TAAAATAA
90746 AATACTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
14 6 0.19
15 24 0.75
16 2 0.06
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.17
Consensus pattern (15 bp):
TAAAATAAGAAAAAA
Found at i:90821 original size:15 final size:16
Alignment explanation
Indices: 90785--90826 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
90775 GCAAAAACAA
90785 AAAATAAAAAAGTAAG
1 AAAATAAAAAAGTAAG
*
90801 AAAATAAAAAA-TTAG
1 AAAATAAAAAAGTAAG
*
90816 AGAATAAAAAA
1 AAAATAAAAAA
90827 ATATAAAAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.76, C:0.00, G:0.10, T:0.14
Consensus pattern (16 bp):
AAAATAAAAAAGTAAG
Found at i:90827 original size:16 final size:16
Alignment explanation
Indices: 90702--90829 Score: 59
Period size: 16 Copynumber: 7.8 Consensus size: 16
90692 TTAAAATATG
*
90702 AATAAAAAATAAAAGAA
1 AATAAAAAA-ATAAGAA
*
90719 AA-AATAAAATAAGAGAA
1 AATAAAAAAAT-A-AGAA
**
90736 AATAAAATAAAATACTAA
1 AAT-AAA-AAAATAAGAA
*
90754 AA-AAATAACAATTA-AA
1 AATAAA-AA-AATAAGAA
*
90770 AATAAGCAAAAACAA-AA
1 AATAA--AAAAATAAGAA
*
90787 AATAAAAAAGTAAGAA
1 AATAAAAAAATAAGAA
* *
90803 AAT-AAAAAATTAGAG
1 AATAAAAAAATAAGAA
90818 AATAAAAAAATA
1 AATAAAAAAATA
90830 TAAAAGGAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 23
0.69 0.12 0.19
Matches are distributed among these distances:
15 19 0.22
16 28 0.33
17 23 0.27
18 6 0.07
19 4 0.05
20 5 0.06
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (16 bp):
AATAAAAAAATAAGAA
Found at i:90937 original size:17 final size:17
Alignment explanation
Indices: 90917--90985 Score: 50
Period size: 18 Copynumber: 3.9 Consensus size: 17
90907 GTCAAAAGAA
90917 AAAATTAAAAAAAATGC
1 AAAATTAAAAAAAATGC
** * *
90934 AAAAACAAAAAAATTTC
1 AAAATTAAAAAAAATGC
*
90951 AAAAATGAAGAAAAAATGAC
1 -AAAATTAA-AAAAAATG-C
90971 AAAA-TAGAAAAAAAT
1 AAAATTA-AAAAAAAT
90986 TTAGTTTATA
Statistics
Matches: 39, Mismatches: 9, Indels: 7
0.71 0.16 0.13
Matches are distributed among these distances:
17 13 0.33
18 14 0.36
19 11 0.28
20 1 0.03
ACGTcount: A:0.72, C:0.06, G:0.07, T:0.14
Consensus pattern (17 bp):
AAAATTAAAAAAAATGC
Found at i:91107 original size:77 final size:76
Alignment explanation
Indices: 90966--91110 Score: 177
Period size: 77 Copynumber: 1.9 Consensus size: 76
90956 TGAAGAAAAA
* * * * *
90966 ATGACAAAATAGAAAAAAATTTAGTTTATAAAATACAAACAAATAATAAGAAATAAAGATATAAA
1 ATGACAAAATAGAAAAAAA-TTAGTTTAGAAAATACAAACAAATAAAAAGAAAGAAAAAAATAAA
91031 AAATGAAAAGGG
65 AAATGAAAAGGG
* *
91043 ATGACAAAGTAGAAAAAAA-TAGTTTAGAAAATACAAGCAAA-AAAAAGTAATAAGAAAAAAATA
1 ATGACAAAATAGAAAAAAATTAGTTTAGAAAATACAAACAAATAAAAAG--A-AAGAAAAAAATA
91106 AAAAA
63 AAAAA
91111 AATCAAAGAT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
74 5 0.09
75 20 0.34
76 1 0.02
77 32 0.55
ACGTcount: A:0.66, C:0.04, G:0.12, T:0.18
Consensus pattern (76 bp):
ATGACAAAATAGAAAAAAATTAGTTTAGAAAATACAAACAAATAAAAAGAAAGAAAAAAATAAAA
AATGAAAAGGG
Found at i:91261 original size:20 final size:19
Alignment explanation
Indices: 91204--91254 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
91194 TGGAAACAAG
*
91204 AAATAAAAAAATTATGAAAA
1 AAATAAAAAAA-TAAGAAAA
*
91224 AAATCAGAAAAATAAGAAAA
1 AAAT-AAAAAAATAAGAAAA
91244 AAATAAAAAAA
1 AAATAAAAAAA
91255 CGAAGAAGCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 6 0.22
20 15 0.56
21 6 0.22
ACGTcount: A:0.78, C:0.02, G:0.06, T:0.14
Consensus pattern (19 bp):
AAATAAAAAAATAAGAAAA
Found at i:91294 original size:33 final size:32
Alignment explanation
Indices: 91231--91294 Score: 76
Period size: 33 Copynumber: 1.9 Consensus size: 32
91221 AAAAAATCAG
*
91231 AAAAATAAGAAAAAAATAAAAAAACGAAGAAGC
1 AAAAATAAGAAAAAAACAAAAAAAC-AAGAAGC
*
91264 AAAAATATGAAATAAAACAAAAAGAA-AAGAA
1 AAAAATAAGAAA-AAAACAAAAA-AACAAGAA
91295 AACTTTATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
33 16 0.59
34 9 0.33
35 2 0.07
ACGTcount: A:0.77, C:0.05, G:0.11, T:0.08
Consensus pattern (32 bp):
AAAAATAAGAAAAAAACAAAAAAACAAGAAGC
Found at i:91599 original size:51 final size:50
Alignment explanation
Indices: 91544--91643 Score: 119
Period size: 51 Copynumber: 2.0 Consensus size: 50
91534 ATAATACCAA
* *
91544 TAAGACAAGAAACAATAAAAAACAAACAAAATACAATAAAAATATAAAAAG
1 TAAGAAAAGAAAAAATAAAAAACAAA-AAAATACAATAAAAATATAAAAAG
* * * ** *
91595 TAAGAAAATAAAAAATAAAAAAGATAAAAATTGAATAAAAATTTAAAAA
1 TAAGAAAAGAAAAAATAAAAAACAAAAAAATACAATAAAAATATAAAAA
91644 ATGAAAAGGA
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
50 20 0.49
51 21 0.51
ACGTcount: A:0.73, C:0.05, G:0.06, T:0.16
Consensus pattern (50 bp):
TAAGAAAAGAAAAAATAAAAAACAAAAAAATACAATAAAAATATAAAAAG
Found at i:91607 original size:15 final size:16
Alignment explanation
Indices: 91581--91624 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
91571 AAAATACAAT
* *
91581 AAAAATATAAAAAGTA
1 AAAAAGATAAAAAATA
*
91597 AGAAA-ATAAAAAATA
1 AAAAAGATAAAAAATA
91612 AAAAAGATAAAAA
1 AAAAAGATAAAAA
91625 TTGAATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.14
Consensus pattern (16 bp):
AAAAAGATAAAAAATA
Found at i:91624 original size:8 final size:7
Alignment explanation
Indices: 91578--91616 Score: 51
Period size: 7 Copynumber: 5.3 Consensus size: 7
91568 AACAAAATAC
91578 AATAAAA
1 AATAAAA
91585 ATATAAAA
1 A-ATAAAA
*
91593 AGTAAGAA
1 AATAA-AA
91601 AATAAAA
1 AATAAAA
91608 AATAAAA
1 AATAAAA
91615 AA
1 AA
91617 GATAAAAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 15 0.54
8 13 0.46
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.15
Consensus pattern (7 bp):
AATAAAA
Found at i:95486 original size:18 final size:19
Alignment explanation
Indices: 95441--95491 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
95431 CAAATTATAC
*
95441 TATTTAT-TAATATTAATA
1 TATTTATATAATTTTAATA
*
95459 TAATTA-ATAATTTTAAT-
1 TATTTATATAATTTTAATA
*
95476 TATTTATATAAATTTA
1 TATTTATATAATTTTA
95492 CGGTAACAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTTATATAATTTTAATA
Found at i:95866 original size:17 final size:18
Alignment explanation
Indices: 95831--95886 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 18
95821 TATTAAATAA
*
95831 AAATTAATTTA-TAATTAT
1 AAATTAATTAACT-ATTAT
95849 AAATTAA-TAACTATTAT
1 AAATTAATTAACTATTAT
* *
95866 -AATTAATTAATTATAAT
1 AAATTAATTAACTATTAT
95883 AAAT
1 AAAT
95887 CAGTATTAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
16 6 0.19
17 15 0.47
18 11 0.34
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATTAATTAACTATTAT
Found at i:95981 original size:42 final size:43
Alignment explanation
Indices: 95906--95986 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
95896 TATTTTTTAT
*
95906 TAATATTAATAAATATAATTATATAATATTAATATTTATCAAA
1 TAATATTAATAAATATAATTATATAATATTAATAATTATCAAA
*
95949 TAATA-TATTAAATAT-ATTA-ATAATATTATAATAATTAT
1 TAATATTAATAAATATAATTATATAATA-T-TAATAATTAT
95987 TTATAAATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 6 0.18
41 5 0.15
42 18 0.53
43 5 0.15
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (43 bp):
TAATATTAATAAATATAATTATATAATATTAATAATTATCAAA
Found at i:96006 original size:27 final size:28
Alignment explanation
Indices: 95941--96013 Score: 69
Period size: 27 Copynumber: 2.6 Consensus size: 28
95931 ATATTAATAT
*
95941 TTATCA-AATAATATATTAAATATATTAA
1 TTATCATAATAAT-TATTAAATAAATTAA
* *
95969 TAATATTATAATAATTATT-TATAAATTAA
1 T--TATCATAATAATTATTAAATAAATTAA
*
95998 TTATCATAATAGTTAT
1 TTATCATAATAATTAT
96014 CATTAGTACC
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
27 13 0.35
28 1 0.03
29 9 0.24
30 8 0.22
31 6 0.16
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (28 bp):
TTATCATAATAATTATTAAATAAATTAA
Found at i:96122 original size:22 final size:21
Alignment explanation
Indices: 96093--96148 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
96083 ATAATTGGAA
*
96093 TAAAATTATTATTATTATTTT
1 TAAAATTATAATTATTATTTT
*
96114 TAAAGATTATAATTATTATTAAT
1 TAAA-ATTATAATTATTATT-TT
*
96137 TAATATTATAAT
1 TAAAATTATAAT
96149 ATTTATTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 4 0.13
22 22 0.73
23 4 0.13
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TAAAATTATAATTATTATTTT
Found at i:96154 original size:22 final size:22
Alignment explanation
Indices: 96119--96231 Score: 60
Period size: 22 Copynumber: 5.1 Consensus size: 22
96109 ATTTTTAAAG
96119 ATTATAAT-TATTATTAATTAAT
1 ATTATAATAT-TTATTAATTAAT
96141 ATTATAATATTTATTATACTT--T
1 ATTATAATATTTATTA-A-TTAAT
* **
96163 ATAATAATATAAATTAATTAATT
1 ATTATAATATTTATTAATTAA-T
* *
96186 ATTATTCAGATTAATATTAATT-AT
1 ATTA-TAATATT--TATTAATTAAT
*
96210 ATGATAA-A-TTA-TAATTAAT
1 ATTATAATATTTATTAATTAAT
96229 ATT
1 ATT
96232 TTATTAATAT
Statistics
Matches: 70, Mismatches: 11, Indels: 23
0.67 0.11 0.22
Matches are distributed among these distances:
18 5 0.07
19 6 0.09
20 2 0.03
21 2 0.03
22 29 0.41
23 8 0.11
24 10 0.14
25 1 0.01
26 7 0.10
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (22 bp):
ATTATAATATTTATTAATTAAT
Found at i:96239 original size:11 final size:12
Alignment explanation
Indices: 96223--96287 Score: 55
Period size: 12 Copynumber: 5.5 Consensus size: 12
96213 ATAAATTATA
96223 ATTAATAT-TTT
1 ATTAATATATTT
96234 ATTAATATATTT
1 ATTAATATATTT
* *
96246 AATATTATA-TT
1 ATTAATATATTT
*
96257 A-TAATTATAATAT
1 ATTAA-TAT-ATTT
*
96270 ATTAATATAATT
1 ATTAATATATTT
96282 ATTAAT
1 ATTAAT
96288 TTGAATAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
10 2 0.05
11 14 0.33
12 19 0.44
13 5 0.12
14 3 0.07
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTAATATATTT
Found at i:96241 original size:39 final size:37
Alignment explanation
Indices: 96195--96283 Score: 101
Period size: 36 Copynumber: 2.4 Consensus size: 37
96185 TATTATTCAG
* *
96195 ATTAATATTAATTATATGA-TAAATTATAATTAATATTTT
1 ATTAATA-TAATTATAT-ATTAAATTATAATT-ATAATAT
* *
96234 ATTAATATATTTA-ATATTATATTATAATTATAATAT
1 ATTAATATAATTATATATTAAATTATAATTATAATAT
96270 ATTAATATAATTAT
1 ATTAATATAATTAT
96284 TAATTTGAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
36 18 0.42
37 13 0.30
38 5 0.12
39 7 0.16
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (37 bp):
ATTAATATAATTATATATTAAATTATAATTATAATAT
Found at i:96269 original size:19 final size:18
Alignment explanation
Indices: 96217--96269 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
96207 TATATGATAA
*
96217 ATTATAA-TTAATATTTT
1 ATTATAATTTAATATTAT
96234 ATTAATATATTTAATATTAT
1 ATT-ATA-ATTTAATATTAT
96254 ATTATAATTATAATAT
1 ATTATAATT-TAATAT
96270 ATTAATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
17 3 0.10
18 6 0.19
19 10 0.32
20 12 0.39
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTATAATTTAATATTAT
Found at i:96278 original size:19 final size:19
Alignment explanation
Indices: 96219--96283 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
96209 TATGATAAAT
* *
96219 TATAATTAATATTTTATTAA
1 TATAATT-ATAATATATTAA
*
96239 TAT-ATT-TAATAT-TATAT
1 TATAATTATAATATAT-TAA
96256 TATAATTATAATATATTAA
1 TATAATTATAATATATTAA
96275 TATAATTAT
1 TATAATTAT
96284 TAATTTGAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
16 1 0.03
17 9 0.24
18 3 0.08
19 20 0.54
20 4 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATAATTATAATATATTAA
Found at i:96284 original size:48 final size:49
Alignment explanation
Indices: 96123--96287 Score: 121
Period size: 48 Copynumber: 3.3 Consensus size: 49
96113 TTAAAGATTA
*
96123 TAATT-ATTATTAATTAATATTATAATATT-TATTATACTTTATAATAATATAAAT
1 TAATTAATTATTAA-TAATATT-TAATATTATATTATA-ATTATAAT--TAT--AT
* * * *
96177 TAATTAATTATTATTCAGA-TTAATATTA-ATTAT-ATGATAAATTATAAT
1 TAATTAATTATTAATAATATTTAATATTATATTATAATTAT-AATTAT-AT
*
96225 TAA-TATTTTATTAAT-ATATTTAATATTATATTATAATTATAA-TATAT
1 TAATTA-ATTATTAATAATATTTAATATTATATTATAATTATAATTATAT
96272 TAATATAATTATTAAT
1 TAAT-TAATTATTAAT
96288 TTGAATAATT
Statistics
Matches: 92, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
47 9 0.10
48 33 0.36
49 12 0.13
50 7 0.08
51 3 0.03
52 12 0.13
53 1 0.01
54 8 0.09
55 7 0.08
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (49 bp):
TAATTAATTATTAATAATATTTAATATTATATTATAATTATAATTATAT
Found at i:96579 original size:24 final size:24
Alignment explanation
Indices: 96533--96581 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
96523 ATGAATTAAG
96533 ATAATTGTAATAATTATTATTATA
1 ATAATTGTAATAATTATTATTATA
96557 ATAATT-T-ATAATATATTATTTATA
1 ATAATTGTAATAAT-TATTA-TTATA
96581 A
1 A
96582 CACGTTCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.22
23 6 0.26
24 12 0.52
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATAATTGTAATAATTATTATTATA
Found at i:96689 original size:23 final size:24
Alignment explanation
Indices: 96636--96711 Score: 81
Period size: 23 Copynumber: 3.3 Consensus size: 24
96626 TTTACTATTT
96636 TAATATTAAATTATATAATATAAC
1 TAATATTAAATTATATAATATAAC
*
96660 TATATATTAAA-T-TATAATATAAT
1 TA-ATATTAAATTATATAATATAAC
*
96683 TGAATATTAAACTAT-TAAT-TAA-
1 T-AATATTAAATTATATAATATAAC
96705 TAATATT
1 TAATATT
96712 GTTTTAATAT
Statistics
Matches: 47, Mismatches: 1, Indels: 11
0.80 0.02 0.19
Matches are distributed among these distances:
21 6 0.13
22 1 0.02
23 22 0.47
24 9 0.19
25 9 0.19
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (24 bp):
TAATATTAAATTATATAATATAAC
Found at i:96824 original size:19 final size:18
Alignment explanation
Indices: 96797--96849 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 18
96787 TATTTATTTC
*
96797 AAATCATTAAAATAATAAT
1 AAATAATTAAAATAA-AAT
96816 AAATAATTAAAAT-AAAT
1 AAATAATTAAAATAAAAT
96833 ATAATAATTATAAATAA
1 A-AATAATTA-AAATAA
96850 CTTAAATATA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 4 0.13
18 9 0.30
19 16 0.53
20 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (18 bp):
AAATAATTAAAATAAAAT
Found at i:96828 original size:9 final size:9
Alignment explanation
Indices: 96797--96855 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
96787 TATTTATTTC
*
96797 AAATCATTA
1 AAATAATTA
*
96806 AAATAATAA
1 AAATAATTA
96815 TAAATAATTA
1 -AAATAATTA
*
96825 AAATAAATA
1 AAATAATTA
*
96834 TAATAATTA
1 AAATAATTA
96843 TAAATAACTTA
1 -AAATAA-TTA
96854 AA
1 AA
96856 TATATAATGG
Statistics
Matches: 40, Mismatches: 7, Indels: 5
0.77 0.13 0.10
Matches are distributed among these distances:
9 22 0.55
10 15 0.38
11 3 0.08
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.32
Consensus pattern (9 bp):
AAATAATTA
Found at i:96900 original size:20 final size:21
Alignment explanation
Indices: 96877--96927 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 21
96867 TATTAATATT
96877 ATATAATTA-ATAAATAAATA
1 ATATAATTATATAAATAAATA
* *
96897 ATAT-ATTATATAATTATATA
1 ATATAATTATATAAATAAATA
*
96917 GTATAA-TATAT
1 ATATAATTATAT
96928 TAGTATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 4 0.15
20 21 0.81
21 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATATAATTATATAAATAAATA
Found at i:96902 original size:27 final size:27
Alignment explanation
Indices: 96872--96954 Score: 91
Period size: 27 Copynumber: 3.0 Consensus size: 27
96862 ATGGTTATTA
96872 ATATTATATAATTAATAAATA-AATAAT
1 ATATTATATAATT-ATAAATAGAATAAT
*
96899 ATATTATATAATTAT--ATAGTATAAT
1 ATATTATATAATTATAAATAGAATAAT
96924 ATATTAGTATAATTTATAAATATGATATAAT
1 ATATTA-TATAA-TTATAAATA-GA-ATAAT
96955 TAGATTATTT
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
24 3 0.06
25 11 0.23
26 7 0.15
27 17 0.36
29 3 0.06
30 1 0.02
31 5 0.11
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.45
Consensus pattern (27 bp):
ATATTATATAATTATAAATAGAATAAT
Found at i:96921 original size:13 final size:13
Alignment explanation
Indices: 96905--96941 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
96895 TAATATATTA
96905 TATAATTATATAG
1 TATAATTATATAG
96918 TATAA-TATATTAG
1 TATAATTATA-TAG
96931 TATAATT-TATA
1 TATAATTATATA
96942 AATATGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.27
13 15 0.68
14 1 0.05
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (13 bp):
TATAATTATATAG
Found at i:97045 original size:23 final size:25
Alignment explanation
Indices: 97019--97081 Score: 69
Period size: 28 Copynumber: 2.5 Consensus size: 25
97009 GTATTTTAAC
*
97019 TATATTAATAT-TAATT-ATAGTAT
1 TATATTAATATATAATTAATAATAT
97042 TATATTTAAATTATATAATTAATAATAT
1 TATA-TT-AA-TATATAATTAATAATAT
97070 TAT-TTAATATAT
1 TATATTAATATAT
97082 TACTAATATA
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
23 4 0.12
24 7 0.21
25 4 0.12
26 5 0.15
27 5 0.15
28 9 0.26
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TATATTAATATATAATTAATAATAT
Found at i:97698 original size:20 final size:20
Alignment explanation
Indices: 97646--97712 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
97636 ATATTAATTA
*
97646 ATTATAAAA-TATTATAAAT
1 ATTATAAAATTATAATAAAT
* * * *
97665 CTTCTAATATTATAATTAAT
1 ATTATAAAATTATAATAAAT
*
97685 ATTATAAAATTATAA-AATT
1 ATTATAAAATTATAATAAAT
97704 ATTTATAAA
1 A-TTATAAA
97713 TTTAAAGTAA
Statistics
Matches: 36, Mismatches: 10, Indels: 3
0.73 0.20 0.06
Matches are distributed among these distances:
19 9 0.25
20 27 0.75
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTATAAAATTATAATAAAT
Found at i:98179 original size:17 final size:17
Alignment explanation
Indices: 98069--98180 Score: 73
Period size: 17 Copynumber: 6.7 Consensus size: 17
98059 TTAGTTACAC
98069 TATTAATAA-TA-ATAA
1 TATTAATAATTATATAA
98084 TTATTAAATAATTATA-AA
1 -TATT-AATAATTATATAA
*
98102 TATT-ATATATTATACTTA
1 TATTAATA-ATTATA-TAA
98120 TATT--TAGA--ATATAA
1 TATTAATA-ATTATATAA
98134 -ATTAATAAATTATATAA
1 TATTAAT-AATTATATAA
98151 TTAGTT-ATAATTATATAA
1 -TA-TTAATAATTATATAA
98169 TATTAATAATTA
1 TATTAATAATTA
98181 ATTTATTGTT
Statistics
Matches: 78, Mismatches: 3, Indels: 29
0.71 0.03 0.26
Matches are distributed among these distances:
13 3 0.04
14 2 0.03
15 8 0.10
16 13 0.17
17 27 0.35
18 19 0.24
19 4 0.05
20 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.02, T:0.46
Consensus pattern (17 bp):
TATTAATAATTATATAA
Found at i:98331 original size:21 final size:21
Alignment explanation
Indices: 98307--98366 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
98297 TTATTCTTTT
98307 ATATTTTATAATTATAATTTA
1 ATATTTTATAATTATAATTTA
***
98328 ATATAAAATAA-TATTAATTTA
1 ATATTTTATAATTA-TAATTTA
*
98349 TTATATTTATAAATTATA
1 ATAT-TTTAT-AATTATA
98367 TGTAATTATT
Statistics
Matches: 28, Mismatches: 7, Indels: 6
0.68 0.17 0.15
Matches are distributed among these distances:
20 2 0.07
21 18 0.64
22 2 0.07
23 4 0.14
24 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATATTTTATAATTATAATTTA
Found at i:98359 original size:27 final size:26
Alignment explanation
Indices: 98329--98385 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
98319 TATAATTTAA
*
98329 TATAAAATAATAT-TAATTTATTATATT
1 TATAAAATAATATGTAA-TTATT-CATT
*
98356 TAT-AAATTATATGTAATTATTCATT
1 TATAAAATAATATGTAATTATTCATT
98381 TATAA
1 TATAA
98386 TCTTATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 6 0.23
26 14 0.54
27 6 0.23
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (26 bp):
TATAAAATAATATGTAATTATTCATT
Found at i:98835 original size:18 final size:18
Alignment explanation
Indices: 98804--98838 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
98794 AAATAATAAT
98804 TATTAATATATATAAATA
1 TATTAATATATATAAATA
98822 TATT-ATATATTATAAAT
1 TATTAATATA-TATAAAT
98839 CTAATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAATATATATAAATA
Found at i:98903 original size:5 final size:5
Alignment explanation
Indices: 98893--98979 Score: 53
Period size: 5 Copynumber: 18.0 Consensus size: 5
98883 CTAATAATAT
* *
98893 TTATA TTATA TTATA TTAT- TTA-A TTA-A TGAATA TT-TA -AATA TTAATA
1 TTATA TTATA TTATA TTATA TTATA TTATA T-TATA TTATA TTATA TT-ATA
* *
98940 TTA-A TTATA TTTATA TTA-A ATATA TTATA ATATAA TTATA
1 TTATA TTATA -TTATA TTATA TTATA TTATA TTAT-A TTATA
98980 CTTGTTATAA
Statistics
Matches: 64, Mismatches: 8, Indels: 20
0.70 0.09 0.22
Matches are distributed among these distances:
4 19 0.30
5 29 0.45
6 16 0.25
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (5 bp):
TTATA
Found at i:98917 original size:57 final size:56
Alignment explanation
Indices: 98856--98967 Score: 138
Period size: 57 Copynumber: 2.0 Consensus size: 56
98846 AGATTATATA
* *
98856 TAATTAA-GTAATATTAAAATA-CATTATCTAATAATATTTATATTATATTATATTATT
1 TAATTAATG-AATATTAAAATATCAATAT-TAATAATATTTATATTA-AATATATTATT
* * *
98913 TAATTAATGAATATTTAAATATTAATATTAATTATATTTATATTAAATATATTAT
1 TAATTAATGAATATTAAAATATCAATATTAATAATATTTATATTAAATATATTAT
98968 AATATAATTA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
56 9 0.19
57 34 0.71
58 5 0.10
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (56 bp):
TAATTAATGAATATTAAAATATCAATATTAATAATATTTATATTAAATATATTATT
Found at i:98949 original size:15 final size:14
Alignment explanation
Indices: 98893--98979 Score: 65
Period size: 15 Copynumber: 6.0 Consensus size: 14
98883 CTAATAATAT
98893 TTATATTATATTATA
1 TTATATTA-ATTATA
98908 TTAT-TTAATTA-A
1 TTATATTAATTATA
*
98920 TGAATATTTAA--ATA
1 T-TATA-TTAATTATA
98934 TTAATATTAATTATA
1 TT-ATATTAATTATA
*
98949 TTTATATTAAATATA
1 -TTATATTAATTATA
98964 TTATAATATAATTATA
1 TTAT-AT-TAATTATA
98980 CTTGTTATAA
Statistics
Matches: 58, Mismatches: 4, Indels: 19
0.72 0.05 0.23
Matches are distributed among these distances:
12 2 0.03
13 11 0.19
14 12 0.21
15 24 0.41
16 9 0.16
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (14 bp):
TTATATTAATTATA
Found at i:98958 original size:28 final size:31
Alignment explanation
Indices: 98866--98979 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 31
98856 TAATTAAGTA
* * *
98866 ATATTAAA-A-TACATTATCTAATAATATTT
1 ATATTAAATATTATATTATTTAATTATATTT
**
98895 ATATT--ATATTATATTATTTAATTA-ATGA
1 ATATTAAATATTATATTATTTAATTATATTT
98923 ATATTTAAATATTA-A-TA-TTAATTATATTT
1 ATA-TTAAATATTATATTATTTAATTATATTT
* *
98952 ATATTAAATA-TATTATAATATAATTATA
1 ATATTAAATATTA-TATTATTTAATTATA
98980 CTTGTTATAA
Statistics
Matches: 66, Mismatches: 9, Indels: 18
0.71 0.10 0.19
Matches are distributed among these distances:
27 3 0.05
28 20 0.30
29 27 0.41
30 2 0.03
31 14 0.21
ACGTcount: A:0.47, C:0.02, G:0.01, T:0.50
Consensus pattern (31 bp):
ATATTAAATATTATATTATTTAATTATATTT
Found at i:98977 original size:20 final size:20
Alignment explanation
Indices: 98954--99012 Score: 50
Period size: 20 Copynumber: 3.0 Consensus size: 20
98944 TTATATTTAT
98954 ATTAAATATATTATAATATA
1 ATTAAATATATTATAATATA
* * *
98974 ATTATACT-TGTTATAATGTA
1 ATTA-AATATATTATAATATA
*
98994 A-TAATATAAATTATAATAT
1 ATTAA-ATATATTATAATAT
99013 TAATAATTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 6
0.69 0.17 0.14
Matches are distributed among these distances:
18 1 0.03
19 3 0.10
20 23 0.79
21 2 0.07
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (20 bp):
ATTAAATATATTATAATATA
Found at i:99570 original size:12 final size:12
Alignment explanation
Indices: 99553--99582 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
99543 TAAAATAGTA
99553 ATAATATATATT
1 ATAATATATATT
99565 ATAATATATATT
1 ATAATATATATT
99577 A-AATAT
1 ATAATAT
99583 TGTCAATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATAATATATATT
Found at i:99645 original size:23 final size:22
Alignment explanation
Indices: 99610--99665 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
99600 CTGAAACAAT
99610 TATAT-ATTAATAAATAAAATAAC
1 TATATAATT-ATAAAT-AAATAAC
* *
99633 TATATAATTATAAATTAATAAT
1 TATATAATTATAAATAAATAAC
99655 TATTATAATTA
1 TA-TATAATTA
99666 ATTAATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 7 0.24
23 19 0.66
24 3 0.10
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATATAATTATAAATAAATAAC
Found at i:99653 original size:14 final size:14
Alignment explanation
Indices: 99636--99676 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 14
99626 AAATAACTAT
99636 ATAATTATAAATTA
1 ATAATTATAAATTA
99650 ATAATTATTATAATTA
1 ATAATTA-TA-AATTA
99666 ATTAATTATAA
1 A-TAATTATAA
99677 TCATTTAGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 7 0.29
15 3 0.12
16 8 0.33
17 6 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
ATAATTATAAATTA
Found at i:99661 original size:17 final size:17
Alignment explanation
Indices: 99639--99674 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
99629 TAACTATATA
99639 ATTATAAATTAA-TAATT
1 ATTAT-AATTAATTAATT
99656 ATTATAATTAATTAATT
1 ATTATAATTAATTAATT
99673 AT
1 AT
99675 AATCATTTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTATAATTAATTAATT
Found at i:99771 original size:9 final size:10
Alignment explanation
Indices: 99739--99778 Score: 50
Period size: 9 Copynumber: 4.2 Consensus size: 10
99729 TATTTATCAA
99739 ATAATATATT
1 ATAATATATT
99749 A-AATATATT
1 ATAATATATT
99758 AATAATA-ATT
1 -ATAATATATT
99768 ATAATA-ATT
1 ATAATATATT
99777 AT
1 AT
99779 TTATAAATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
9 19 0.68
10 5 0.18
11 4 0.14
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (10 bp):
ATAATATATT
Found at i:99895 original size:3 final size:3
Alignment explanation
Indices: 99889--99951 Score: 65
Period size: 3 Copynumber: 20.7 Consensus size: 3
99879 TGGATAAAAC
* * *
99889 TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT TAT TAAA GAT TAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT
*
99934 TAT TAT TCAT TAA TAT TA
1 TAT TAT T-AT TAT TAT TA
99952 CAATGTTTAT
Statistics
Matches: 49, Mismatches: 8, Indels: 6
0.78 0.13 0.10
Matches are distributed among these distances:
2 2 0.04
3 43 0.88
4 4 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:100579 original size:28 final size:28
Alignment explanation
Indices: 100530--100584 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
100520 AAAAAAAAAG
*
100530 AAAAAAATGAAAAGATAAATAT-GAAAT
1 AAAAAAAAGAAAAGATAAATATAGAAAT
100557 AAAAAAAAGAAAA-ATAAGTATATAGAAA
1 AAAAAAAAGAAAAGATAA--ATATAGAAA
100585 ATTTTAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 4 0.17
27 12 0.50
28 4 0.17
29 4 0.17
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (28 bp):
AAAAAAAAGAAAAGATAAATATAGAAAT
Found at i:100674 original size:16 final size:16
Alignment explanation
Indices: 100649--100682 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
100639 ATAAGTAAAA
*
100649 AAAAGAAAAAAAATTT
1 AAAAGAAAAAAAAGTT
*
100665 AAAAGGAAAAAAAGTT
1 AAAAGAAAAAAAAGTT
100681 AA
1 AA
100683 TAAAAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.15
Consensus pattern (16 bp):
AAAAGAAAAAAAAGTT
Found at i:100817 original size:11 final size:11
Alignment explanation
Indices: 100803--100834 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
100793 AAAATTTATG
*
100803 AAAATATAAAT
1 AAAAAATAAAT
100814 AAAAAATAAAT
1 AAAAAATAAAT
100825 AAAAAATAAA
1 AAAAAATAAA
100835 ACTGAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (11 bp):
AAAAAATAAAT
Found at i:100859 original size:15 final size:15
Alignment explanation
Indices: 100825--100863 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
100815 AAAAATAAAT
*
100825 AAAAAATAAAACTGA
1 AAAAAATAAAAATGA
*
100840 AAAAAATAAAAATAA
1 AAAAAATAAAAATGA
100855 GAAAAAATA
1 -AAAAAATA
100864 TTAAAGCAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 13 0.62
16 8 0.38
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (15 bp):
AAAAAATAAAAATGA
Found at i:101051 original size:25 final size:25
Alignment explanation
Indices: 101005--101052 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
100995 AAGAAAATAA
* *
101005 AAAATGAATAACAAATTCAAAAATG
1 AAAAGGAATAACAAAATCAAAAATG
* *
101030 AAAAGGAATGACAAAATGAAAAA
1 AAAAGGAATAACAAAATCAAAAA
101053 AAATTAGTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.67, C:0.06, G:0.12, T:0.15
Consensus pattern (25 bp):
AAAAGGAATAACAAAATCAAAAATG
Found at i:103211 original size:50 final size:49
Alignment explanation
Indices: 103130--103227 Score: 124
Period size: 50 Copynumber: 2.0 Consensus size: 49
103120 CAACAGGTTG
* ** * *
103130 GATTAGGGCATCTTCTAAGTCGGTTTAGGTAGTATGGATTTGGATGGTAA
1 GATTAGGGCATCCTAAAAGTCGATTTAGGTAGTACGG-TTTGGATGGTAA
* *
103180 GATTAGGGCATCCTAAAAGTTGATTTGGGTAGTACGGTTTGGATGGTA
1 GATTAGGGCATCCTAAAAGTCGATTTAGGTAGTACGGTTTGGATGGTA
103228 TTCCGATAGT
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
49 11 0.27
50 30 0.73
ACGTcount: A:0.24, C:0.08, G:0.33, T:0.35
Consensus pattern (49 bp):
GATTAGGGCATCCTAAAAGTCGATTTAGGTAGTACGGTTTGGATGGTAA
Found at i:103501 original size:13 final size:13
Alignment explanation
Indices: 103485--103518 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
103475 TTTTAAAATC
103485 AATTTTAAATTTA
1 AATTTTAAATTTA
*
103498 AATTTAAAATTTA
1 AATTTTAAATTTA
*
103511 AAATTTAA
1 AATTTTAA
103519 CTTAATAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATTTTAAATTTA
Found at i:103507 original size:7 final size:7
Alignment explanation
Indices: 103485--103518 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
103475 TTTTAAAATC
*
103485 AATTTTA
1 AATTTAA
103492 AATTT-A
1 AATTTAA
103498 AATTTAA
1 AATTTAA
103505 AATTTAA
1 AATTTAA
103512 AATTTAA
1 AATTTAA
103519 CTTAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (7 bp):
AATTTAA
Found at i:105342 original size:26 final size:26
Alignment explanation
Indices: 105295--105347 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
105285 GTAAAAAAAA
105295 TTTTAAAAATAAAAGAAGTTATCTTAT
1 TTTTAAAAATAAAAGAAGTTAT-TTAT
*
105322 TTTTAAAAATTAATA-AA-TTATTTAT
1 TTTTAAAAA-TAAAAGAAGTTATTTAT
105347 T
1 T
105348 AATAAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 5 0.21
26 4 0.17
27 11 0.46
28 4 0.17
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (26 bp):
TTTTAAAAATAAAAGAAGTTATTTAT
Found at i:105644 original size:16 final size:16
Alignment explanation
Indices: 105623--105655 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
105613 AAATAATATG
105623 TAATTTAATTAAATTT
1 TAATTTAATTAAATTT
*
105639 TAATTTAATTAGATTT
1 TAATTTAATTAAATTT
105655 T
1 T
105656 TAAAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
TAATTTAATTAAATTT
Found at i:106742 original size:2 final size:2
Alignment explanation
Indices: 106735--106764 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
106725 AATTAAAAGA
*
106735 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
106765 TTCAACCCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:109874 original size:2 final size:2
Alignment explanation
Indices: 109867--109897 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
109857 TCCATAAATA
109867 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
109898 AGAAATCCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:114033 original size:163 final size:163
Alignment explanation
Indices: 113760--114068 Score: 528
Period size: 163 Copynumber: 1.9 Consensus size: 163
113750 TGTTAAAACC
* * *
113760 TTCAACCATTAAGGAACTAGTAGAATGAGAGAGAAAAAGGTTCTGTGGCGGTAGACCAGAAAGTA
1 TTCAACCATTAAGGAACTAGTAGAATGAGAGAGAAAAAGGATCTGTGGCGATAGACCAGAAACTA
* * *
113825 TCAATTCAAGGTGGTTGATTCTTACAGGATAATGAGAATGAAAGGATCAAATCAGACTGGTTGCT
66 TCAATTCAAGGAGGTTGATTCTTACAGGAAAATGAGAACGAAAGGATCAAATCAGACTGGTTGCT
113890 TCTGATTATATTACTTGTCATTCTATAAACACT
131 TCTGATTATATTACTTGTCATTCTATAAACACT
*
113923 TTCAACCATTAAGGAACTAGTAGAATGAGAGATAAAAAGGATCTGTGGCGATAGACCAGAAACTA
1 TTCAACCATTAAGGAACTAGTAGAATGAGAGAGAAAAAGGATCTGTGGCGATAGACCAGAAACTA
* * *
113988 TCAATTCAAGGAGGTTGCTTGTTACAGTAAAATGAGAACGAAAGGATCAAATCAGACTGGTTGCT
66 TCAATTCAAGGAGGTTGATTCTTACAGGAAAATGAGAACGAAAGGATCAAATCAGACTGGTTGCT
114053 TCTGATTATATTACTT
131 TCTGATTATATTACTT
114069 ATGTTTTATT
Statistics
Matches: 136, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
163 136 1.00
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.28
Consensus pattern (163 bp):
TTCAACCATTAAGGAACTAGTAGAATGAGAGAGAAAAAGGATCTGTGGCGATAGACCAGAAACTA
TCAATTCAAGGAGGTTGATTCTTACAGGAAAATGAGAACGAAAGGATCAAATCAGACTGGTTGCT
TCTGATTATATTACTTGTCATTCTATAAACACT
Done.