Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168460.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_670, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 18493
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Found at i:646 original size:26 final size:26
Alignment explanation
Indices: 617--669 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
607 CCGGTCCGAT
*
617 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
643 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
669 C
1 C
670 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:1555 original size:26 final size:26
Alignment explanation
Indices: 1517--1569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
1507 CTGGTCCAAT
*
1517 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
1543 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
1569 C
1 C
1570 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:1737 original size:900 final size:898
Alignment explanation
Indices: 1--2099 Score: 3032
Period size: 900 Copynumber: 2.3 Consensus size: 898
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTGTTGCCATGCCAATGCCATTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT-TTGCCATGCCAATGCCATTTT
*
66 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACT
65 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
131 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGA-TTTTTTTAAATTTTTTTCA
130 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTTAAA-TTTTTTCA
* *
195 GAAGGATTTTTAGCCCCAAACTTGGTAGACATGAT-GCTTGTATTTTTGTTGGCTTGTACAAAAA
194 GAAGGATTTTTAGCCCCAAACTTGGTAGACATGATCG-TTGTATTTTTGTTGGCATGCACAAAAA
* * *
259 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTAAAAAAGTGTCCCCATTTCA
258 AATTCAGCAAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
324 GACACTTTGATTGGTACTGGCAACAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGT
323 GACACTTTGAATGGTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
389 TCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATC
388 TCTCAAGGTTTGATGAGGGATAGAGGGACAATATAAGGACCAAGTACCAGCACCAATCGCACATC
** * * * * *
454 ATGTGTGCACACCCCCCCGCCGCCCCAATCGCCGGAACCCCAATGCCATCGGACAGGTTCTCTGG
453 ATGTGCACACACCCCCCCGCCGCCCCAATCGCCAGAACCCCAATGCCACCGGACAAGTTCTCCGA
* * *
519 CGATGCCCCGATGATGGTGCCCCGGGCAAAAAAAAAATACGGCACCAGCACATGCTCGAGTCCAG
518 CGATGCCCCGACGATGGTGCCCCGGGCAAAAAAAAAATACGGCACCAGCACATGCTCAAGCCCAG
* *
584 CATGTGCACCCGTAACCCTCGATCCGGTCCGATCTTACATTGGGAATGAACTCCGTATGCTTAGA
583 CATGTGCACCCGTAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGA
* * * * * *
649 CTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCTCTTAGCAGGCCA
648 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCAGGCCA
* * * *
714 GAGGGGCAGCATGCGCAAGCCGGGGATCGACCGGGTACCCCCTTACGTGCTACCGATCCTGCTGC
713 GAGGGGCAGCATGCGCAAGCCGGGGATCGACCGAGTACCCCCTTACATGCTACCGATCCTACTAC
** * * *
779 TGCAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCGACG
778 CACAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACG
* * * * * *
844 AAACGAACGGGCGGGTGGGCACTACGCCGGCCATAGAGCCAGGATGCGCAAGCCGT
843 AAACGAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCAT
* * *
900 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTG-TAGTGCCAATGCCATAT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TGCCA-TGCCAATGCCATTT
964 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
64 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGAC
* * **
1029 TCTTTTTCTATTTTTCATGATTTTCAAAACTTTTTTACGGTTCAGGATTTTTTTTAAATTTTTTC
129 TCGTTTTCTATTTTTCATGATTTTTAAAAC-TTTTTACGGTTTGGGATTTTTTTTAAATTTTTTC
* * * *
1094 AGAAGGAGTTTTCGCCCCACACTTGGTAGACATGATCGTTGTATTTTTTTTGGCATGCACAAAAA
193 AGAAGGATTTTTAGCCCCAAACTTGGTAGACATGATCGTTGTATTTTTGTTGGCATGCACAAAAA
* *
1159 AATTCAGCAAAAAACTCGAAGTGTACAGGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTTA
258 AATTCAGCAAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
1224 GACACTTT-AATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
323 GACACTTTGAATGG-TACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** **
1288 TTCTTGAGGTTTGATGAGGGATAG-GGGAACAATATAATTACCAAGTACCAGCACCAATCGCACA
387 TTCTCAAGGTTTGATGAGGGATAGAGGG-ACAATATAAGGACCAAGTACCAGCACCAATCGCACA
** *
1352 TCATGTGCACACACCCCCCCGCC-CTCCCAATCGCCAGAACCTCCAATGCTGCCGGTCAAGTTCT
451 TCATGTGCACACACCCCCCCGCCGC-CCCAATCGCCAGAACC-CCAATGCCACCGGACAAGTTCT
* * * **
1416 CCGACGATGCTCCGGCGATGGTGCCCCGGGC-GAAAAAAAATGTGGCACCAGCACATGGCT-AAG
514 CCGACGATGCCCCGACGATGGTGCCCCGGGCAAAAAAAAAATACGGCACCAGCACAT-GCTCAAG
* * *
1479 CCCAGCATGTGCGCCCGTAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCCGTATGC
578 CCCAGCATGTGCACCCGTAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGC
* **
1544 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGTGTACGGGCGCTCAGTT
643 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCA
* * ** * **
1609 GGCCAGAGGGGCAGGATGTGCAAGCTTGGGATTGGTCGAGT-CCCCCTCTACATGCTACCGATCC
708 GGCCAGAGGGGCAGCATGCGCAAGCCGGGGATCGACCGAGTACCCCCT-TACATGCTACCGATCC
**
1673 TACTACCACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
772 TACTACCACAACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
* * * * **
1738 TCAATGAAACGAGCGAGCGGGCGGGCACTACACCGGCTAGAGAGAGGGGATGCGCAAGCCAT
837 CCAACGAAACGAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCAT
**
1800 GGATC-ATAGGGCAGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCCAATGCCATTTT
1 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTTGCCATGCCAATGCCATTTT
1864 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-TGTGAAGTTTCATGGCAAGACGACT
65 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* * *
1928 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTAAAATTTTTTCAA
130 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTTAAATTTTTTCAG
* * * * * *
1993 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGGAAAAAAAAA
195 AAGGATTTTTAGCCCCAAACTTGGTAGACATGATCGTTGTATTTTTGTTGGCATGCACAAAAAAA
* ** *
2058 TTCAGCCAAAAACTTAAAGTGTATAGGATTTTGTGACCATTT
260 TTCAGCAAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
2100 AAGGGGGTGT
Statistics
Matches: 1068, Mismatches: 119, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
897 125 0.12
898 53 0.05
899 250 0.23
900 583 0.55
901 57 0.05
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (898 bp):
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTGCCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTTTAAATTTTTTCAGA
AGGATTTTTAGCCCCAAACTTGGTAGACATGATCGTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCAAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTGAATGGTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CAAGGTTTGATGAGGGATAGAGGGACAATATAAGGACCAAGTACCAGCACCAATCGCACATCATG
TGCACACACCCCCCCGCCGCCCCAATCGCCAGAACCCCAATGCCACCGGACAAGTTCTCCGACGA
TGCCCCGACGATGGTGCCCCGGGCAAAAAAAAAATACGGCACCAGCACATGCTCAAGCCCAGCAT
GTGCACCCGTAACCCTCGATCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACTA
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCAGGCCAGAG
GGGCAGCATGCGCAAGCCGGGGATCGACCGAGTACCCCCTTACATGCTACCGATCCTACTACCAC
AACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCAACGAAA
CGAACGAGCGGGCGGGCACTACACCGGCCAGAGAGACAGGATGCGCAAGCCAT
Found at i:3774 original size:873 final size:886
Alignment explanation
Indices: 2447--4680 Score: 3103
Period size: 902 Copynumber: 2.5 Consensus size: 886
2437 ATCGACTGGT
* * * * *
2447 CCTCTGCGTACTGTTGATCCTGCTACCACAACCCTTGGTCAGGT-TCGATCTTAGACTGGGAATG
1 CCTCTGCGTGCTGATGATCCTGCTGCCGCAACCCTTGGTCAGATCT-GATCTTAGACTGGGAATG
* *
2511 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT--TCGGCCAGCAGAG
65 AACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCACTACTCGGCCAG-AGAG
* * *
2574 GCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTTTG
129 GCGGGATGCGCAAG-CTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
* *
2639 CCCTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTTAAGCCTTCATGTGAA
193 CCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TTAAGCCTTCATGTGAA
* * * * *
2704 GTTTCATTGCAAGACGACTCGTTTTCTATTTTTCA-GATGTTTGAAACTTTTTATGTTTTGGGAT
257 GTTTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGAT
* *
2768 TTTTT-TAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTT
322 TTTTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
2832 ATTGGCATGCATAAAAAAATTCAGCTAAAAACTCAGAGTATACAGGATTTTGTGACCATTTGAAA
387 GTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAA
* * *
2897 AAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC
451 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTC
*
2962 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACT
516 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACC
* * *
3027 AGTACCCAT-TGCACATCATGTGCGCACA-CCCCC-CAGC-CCCCCCAATCGCCG-GAACACCCA
581 AGCACCCATCT-CACATCATGTGCGCACACCCCCCTCACCACCCCCCAATCGCCGAAAAC-CCCA
* * *
3087 ATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGATGATGGTG-CTCTGGGTGAAAAAAA-ATGTG
644 ATGCCGTCGGACAGGTTCTCCAACGAAGCTCCGACGATGGTGCCT-TGGGT-AAAAAAATATGTG
* * *
3150 GCACCAGCACATGCCCGAGCCTAGCATGTGCACCCACAA-CC-C-T-T-G-GT-CT-GG-T-C-C
707 GCACCAGCAAATGCCCAAGCCCAGCATGTGCACCCACAACCCTCATATCGAGTACTGGGATACTC
* **
3204 G-AT-CTTATG-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTG
772 GTATGCTTA-GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTG
* *
3266 CTCAGCCGGCCAGAGGGGCAGGATATGCAAGCCA-AGGATCGGTCGGGTCTC
836 CTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCAGA-GATCGGTCGGGTCCC
* * *
3317 CCTCTGCGTGCTGCTAATCCTGCTGCCGCAACCCTTGGTCTGATCTGATCTTAGACTGGGAATGA
1 CCTCTGCGTGCTGATGATCCTGCTGCCGCAACCCTTGGTCAGATCTGATCTTAGACTGGGAATGA
* *
3382 ACTCCATATGCCTAACCCAACTGACGAAACGAACGGGCGGGCGGGCACTACGTCGGCCAGAGAGG
66 ACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCACTAC-TCGGCCAGAGAGG
* *
3447 CGGGATCCACAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
130 CGGGATGCGCAAG-CTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* *
3512 CATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCATCATGTGAAGT
194 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGT
* * * *
3577 TTCATGGCAAGAAGGCTCATTTTCTACTTTTCATGATTTTTGACACTTTTTACGGTTTGGGATTT
259 TTCATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTT
* *
3642 TTTAAAAATTTTTTCAAAAGAAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
324 TTTAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
3707 TGGCATGCACCAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTCAAAAA
389 TGGCATGCA-CAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAA
3772 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
453 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
* *
3837 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
518 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAG
*
3902 CACCCATCTCACATCATGTGCGCACACCCCCCTCCCCACCCCCCAATCGCCGAAAACCCCAATGC
583 CACCCATCTCACATCATGTGCGCACACCCCCCTCACCACCCCCCAATCGCCGAAAACCCCAATGC
* ***
3967 CGTTGGACAGGTTCTCTGGCGAAGCTCCGACGATGGTGCCTTGGGTAAAAAAATATGTGGCACCA
648 CGTCGGACAGGTTCTCCAACGAAGCTCCGACGATGGTGCCTTGGGTAAAAAAATATGTGGCACCA
* * *
4032 GCAAATGCTCAAGCCCAGCATGTGCACCCGCAACCCTCAGTTCAATCCGATCTTACACTGGGAAT
713 GCAAATGCCCAAGCCCAGCATGTGCACCCACAACCCTCA--T--AT-CGA--GT--ACTGGG-AT
*
4097 GAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCATCCCACAAAACGAGCGTG
768 --AC-TCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTG
** * *
4162 CGGGTGCTCAGTTGGCCAGAGTGGCAGGATGCGCAAGCCAGAGATCGGTCGGGTCCC
830 CGGGTGCTCAGCCGGCCAGAGGGGCAGGATACGCAAGCCAGAGATCGGTCGGGTCCC
* * ** ** * *
4219 CCAT-TGCGTGCT-ATCGATCCTACTGCTGCAACCCTCAGTCAGATCCAATCTTAGACAGGGAAC
1 CC-TCTGCGTGCTGAT-GATCCTGCTGCCGCAACCCTTGGTCAGATCTGATCTTAGACTGGGAAT
* * *
4282 GAACTCCGTATGCCTAAGCCAA-TCGACGAAAC-AAGCAGGCGGGCGGGCACTACACCGGCCGGA
64 GAACTCCGTATGCCTAAGCCAACT-GACGAAACGAA-CGGGCGGGCGGGCACTAC-TCGGCCAGA
4345 GAGGCGGGATGCGCAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
126 GAGGCGGGATGCGCAAGCT-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
4410 CTACCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCATGTG
190 CTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
* *
4475 AAGTTTCATGGCAA-AACGAATCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGG
255 AAGTTTCATGGCAAGAA-GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGG
* *
4539 GATTTTTTAAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTAT
319 GATTTTTT-AAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
4603 TTTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTT
383 TTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTT
4668 GAAAAAAGTGTCC
447 GAAAAAAGTGTCC
4681 TGGTGCCGCA
Statistics
Matches: 1206, Mismatches: 109, Indels: 66
0.87 0.08 0.05
Matches are distributed among these distances:
870 101 0.08
871 47 0.04
872 137 0.11
873 270 0.22
874 6 0.00
875 9 0.01
876 97 0.08
877 7 0.01
878 1 0.00
881 1 0.00
884 1 0.00
886 1 0.00
889 1 0.00
892 2 0.00
893 2 0.00
895 1 0.00
898 1 0.00
900 2 0.00
901 16 0.01
902 490 0.41
903 13 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (886 bp):
CCTCTGCGTGCTGATGATCCTGCTGCCGCAACCCTTGGTCAGATCTGATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGGCGGGCACTACTCGGCCAGAGAGGC
GGGATGCGCAAGCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTT
CATGGCAAGAAGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTT
TAAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCTCACATCATGTGCGCACACCCCCCTCACCACCCCCCAATCGCCGAAAACCCCAATGCCGT
CGGACAGGTTCTCCAACGAAGCTCCGACGATGGTGCCTTGGGTAAAAAAATATGTGGCACCAGCA
AATGCCCAAGCCCAGCATGTGCACCCACAACCCTCATATCGAGTACTGGGATACTCGTATGCTTA
GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGC
CAGAGGGGCAGGATACGCAAGCCAGAGATCGGTCGGGTCCC
Found at i:4134 original size:26 final size:26
Alignment explanation
Indices: 4083--4135 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
4073 TCAATCCGAT
* *
4083 CTTACACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
4109 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
4135 C
1 C
4136 CTAAGTCATC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:4754 original size:26 final size:26
Alignment explanation
Indices: 4716--4768 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4706 ACAGTCTGAT
*
4716 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
*
4742 CTTAGACTAGGAATGAACTCCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
4768 C
1 C
4769 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:9455 original size:17 final size:16
Alignment explanation
Indices: 9435--9488 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
9425 TTTTTAGGAC
*
9435 TTTGGATTTTAAGAGGT
1 TTTGGATTTT-AGGGGT
*
9452 TTTGAATTTTAGGGGAT
1 TTTGGATTTTAGGGG-T
9469 TTTGGATTTTTAGGGGT
1 TTTGGA-TTTTAGGGGT
9486 TTT
1 TTT
9489 ATAAACTTAG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 4 0.12
17 19 0.59
18 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (16 bp):
TTTGGATTTTAGGGGT
Found at i:11108 original size:26 final size:26
Alignment explanation
Indices: 11079--11131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11069 CCGGTCCAAT
*
11079 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCAGTATG
*
11105 CTTAGACTGGGAATGAACTCAGTATG
1 CTTACACTGGGAATGAACTCAGTATG
11131 C
1 C
11132 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCAGTATG
Found at i:11999 original size:26 final size:26
Alignment explanation
Indices: 11970--12019 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
11960 CCGGTCCGAT
*
11970 CTTACACTGGGAGTGAACTCCGTACG
1 CTTACACTGGGAATGAACTCCGTACG
*
11996 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
12020 TGCCTATGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTACG
Found at i:12892 original size:26 final size:26
Alignment explanation
Indices: 12863--12915 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
12853 CCGGTTCGAT
12863 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
12889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
12915 C
1 C
12916 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:13129 original size:893 final size:886
Alignment explanation
Indices: 10919--13835 Score: 4211
Period size: 893 Copynumber: 3.3 Consensus size: 886
10909 GATGTCAACA
* *
10919 CACATCATGTGCGCACACCCCCCGCCCCCTCAATCGTCGAAACCCCCAATGCCGTCGGTCAGGTT
1 CACATCATGTGCGCACACCCCCCACCCCC-CAATCGTCGGAA-CCCCAATGCCGTCGGTCAGGTT
* ** * * * * * *
10984 CTCCGCGAAC-GATGGTGCCCTAGGTGAAAAAAAATGTGGCACCATCACATGCCCGAGCCCAACA
64 CTCCGCGACCTGATGGTGCCCCGGGCGAAAAAAAAAGTAGCACCAGCACATGCCCAAGCCCAGCA
* *
11048 TGTGCACCCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
129 TGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* *
11113 GGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCTAGA
194 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGA
* *
11178 GGGGCT-GGATGCACAAGCCGGGGATCGGTCGAGTCCCCCCTGCATGCTACCGATCCTACTACCG
259 GGGG-TAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACATGCTACCGATCCTACTACCG
* * * *
11242 TAACCCT-TAGTC-CAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGATG
323 TAACCCTCT-GTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * *
11305 AAACGAAC-GAGCGGGCGGGCACTATGCCGGCCAGAGAGGCAGGATGCGCAAGTCGTTGATCGAT
386 AAACGAACGGA-CGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAACTCGTGGATCGAT
*
11369 AGGTTGGTAGGTGGGTTTAGGCACATCTTCATA--TCTGCCACGCCAATGCCATTTTTATGGCTT
450 AGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTT
* *
11432 GTAAATTCCTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTCCT
515 GTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
** * *
11497 ATTTTTCACAATTTTCAAAACTTTTTATGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGAGTTT
580 ATTTTTCATGATTTTC-AAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTAGAAGGAGTTT
* * *
11562 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTCAACTAA
644 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
11627 AAACTCAAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
709 AAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* *
11692 AGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTT
774 AGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
*
11757 GATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCAATCG
839 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
* * *
11805 CACATCATGTGCGCACACCCCCC-GCCCCTAATCGTTGGAACCCCAATGCCGTCGGTTCAGGTTC
1 CACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGG-TCAGGTTC
*
11869 TCCGACGATGCTCCGGTGATGGTGCCCCGGACG-AAAAAAAA-TACGACACCAGCACATGCCCAA
65 TCCG-CGA----CC--TGATGGTGCCCCGGGCGAAAAAAAAAGTA-G-CACCAGCACATGCCCAA
* * *
11932 CCCCAGCATGTGCACCCACAA-CCTCGGTCCGGTCCGATCTTACACTGGGAGTGAACTCCGTACG
121 GCCCAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATG
* *
11996 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
186 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * **
12061 CGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGACCGGATCCCCCCTATGTGCTACCGATCCT
251 CGGCTAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACATGCTACCGATCCT
* * * * *
12126 ACTACTGTAACCATC-GATCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
316 ACTACCGTAACCCTCTG-TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
12190 CCGACGAAACGAGCGGGCGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAACTCGAGGA
380 CCGACGAAACGAACGGACGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAACTCGTGGA
*
12255 TCGATACGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
445 TCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTAT
* * *
12320 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAGGTTTCATGGCAAGACGACTCAT
510 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGT
* * *
12385 TTTCTATTTTTTATGATTTT-AAGATTTTTTACGGTTTGGGATTTTTTTAAATTTTTTTAGAAGG
575 TTTCTATTTTTCATGATTTTCAA-ACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTAGAAGG
* * * * *
12449 ATTTTTGGCCCCAAACTTAGTAAATGTGATCCTTGCATTTTTTTTGGCATGCACAAAAAAATTCA
639 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* *
12514 GCTCAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACT
704 GCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
12579 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
769 TTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
12644 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
834 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
** ** *
12697 CACATCACCTGCGCACACCCCCCACCCCCCAATCACCGGAACCCCAATGCCGTCGGTTAGGTTCT
1 CACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
12762 CCGACGATGCTCCTGCAATGGTGCCCCGGGCGAAAAAAAAAGTAGCACCAGCACATGCCCAAGCC
66 CCG-CGA----CCTG--ATGGTGCCCCGGGCGAAAAAAAAAGTAGCACCAGCACATGCCCAAGCC
** *
12827 CAGCATGTGCACCTGCAACCCTCGGTCCGGTTCGATCTTACACTGGGAATGAACTCCGTATGCTT
124 CAGCATGTGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTT
*
12892 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGCCGG
189 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* **
12957 CTAGAGGGGTAGGATGCACAAGCCGGGGATCGGTTGGGTCCCCCCTACATGCTACCGATCCTGTT
254 CTAGAGGGGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACATGCTACCGATCCTACT
* ** * *
13022 GCCACAACCCTCTGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGA
319 ACCGTAACCCTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
13087 CGAAACGATCGGACGGGCAGGCACTACGTCGGCTAGAGAGGCGGGATGCGCAAGC-CGTGGATCG
384 CGAAACGAACGGACGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAA-CTCGTGGATCG
* * * *
13151 ATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCCTACCAATGCCATTTTTATGGC
448 ATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGC
*
13216 TTGTAAATTCATACAATGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGATGACTCGTTTT
513 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTT
*
13281 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTTAGAAGGAG
578 CTATTTTTCATGA-TTTTCAAACTTTTTACGGTTCGGGATTTTTTT-AAATTTTTTTAGAAGGAG
* *
13346 TTTTGGCCCCAAAATTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTCAGC
641 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* *
13411 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTT
706 TAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* **
13476 AATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATT
771 AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
13541 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCG
836 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
* * * *
13592 CACATGATGTGCGCACAACCCCCACCCCCCAATCGTCGGAACCCCAATGCTGTCGATCAGGTTCT
1 CACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
13657 ---CGA--TGATGGTGCCTCGGGC-AAAAAAAAATGCAGCACCAGCACATGCCCAAGCTCAGCAT
66 CCGCGACCTGATGGTGCCCCGGGCGAAAAAAAAA-GTAGCACCAGCACATGCCCAAGCCCAGCAT
* * * * *
13716 TTGCACCCACAACCC-CTGGTCTGATCTGATCTTACACTGGGAATGAACTCCGTATACTTAGACT
130 GTGCACCCACAACCCTC-GGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * *
13780 GGGAATCAAATTCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAG
194 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
13836 TGGCGTCCCC
Statistics
Matches: 1823, Mismatches: 176, Indels: 67
0.88 0.09 0.03
Matches are distributed among these distances:
882 10 0.01
883 159 0.09
884 21 0.01
885 9 0.00
886 23 0.01
889 1 0.00
890 5 0.00
891 312 0.17
892 405 0.22
893 541 0.30
894 31 0.02
895 306 0.17
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (886 bp):
CACATCATGTGCGCACACCCCCCACCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
CCGCGACCTGATGGTGCCCCGGGCGAAAAAAAAAGTAGCACCAGCACATGCCCAAGCCCAGCATG
TGCACCCACAACCCTCGGTCCGGTCCGATCTTACACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAGAGG
GGTAGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCCTACATGCTACCGATCCTACTACCGTAA
CCCTCTGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AACGGACGGGCAGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAACTCGTGGATCGATAGGTTG
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTT
CATGATTTTCAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
Found at i:13795 original size:26 final size:26
Alignment explanation
Indices: 13746--13796 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
13736 CTGATCTGAT
* *
13746 CTTACACTGGGAATGAACTCCGTATA
1 CTTACACTGGGAATCAAATCCGTATA
* *
13772 CTTAGACTGGGAATCAAATTCGTAT
1 CTTACACTGGGAATCAAATCCGTAT
13797 GCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATCAAATCCGTATA
Found at i:15385 original size:26 final size:26
Alignment explanation
Indices: 15356--15405 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15346 TCGGTCCGAT
*
15356 CTTACGCTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
15382 CTTACACTGGGAATGAACTTCGTA
1 CTTACACTGGGAATGAACTCCGTA
15406 AGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:16052 original size:750 final size:749
Alignment explanation
Indices: 14591--16069 Score: 2254
Period size: 750 Copynumber: 2.0 Consensus size: 749
14581 ATCCGCAACT
* *
14591 CTCGGTCCAGTCCGATCTTACACTGGGAATTAACTACATATGCTTAGACTGGGAATGAACTCCGT
1 CTCGGTCCAGTCCGATCTTACACTGGGAATGAACTACATATGCTTACACTGGGAATGAACTCCGT
* * * * * ** *
14656 ATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGTGTA
66 AAGCCTAAGTCAACCCAAGAAATGAGCGTACAGGCACTCAGCCAACCAGAGGGGCAGGATGCGTA
* * ** * * * *
14721 AGTTGGGGATCAGCCGGGTCCCACTCGGGTACTGTCGATCTTGCTACCACAACCCTTGTTTGGTC
131 AGCTGGGGATCAGCCGGGTCCCACCCACGTACTGCCAATCTTGCTACCACAACCCTGGTTCGGTC
* **
14786 CAATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGTTGGCAGGCGGG
196 CAATCTTAGACTGGAAATGAACACCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGG
* **
14851 CACTACGTCGGCAGAGAGGCGGGATGCGCAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
261 CACTACGTCGGCAGAGAGGCGGGATGCGCAAGACATGGATCGATAAAGTGGTAGGTGGGTTTAGG
* * *
14916 CACATCTTCATATTTTTTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCC
326 CACATCTTCATATTTCTGCCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAACGGTCCC
**
14981 TTAAGCCTTCATGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
391 TTAAGCCTTCATGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
* * * *
15046 TTTTTACGGTTCGGGATTTTTTTAAATTTTTTTCAGAAGGCATTTTGGCCCCAAACTTGGTAGAC
456 ATTTTACGCTTCGGGATTTTTTTAAAATTTTTTCAGAAGGCATTTTGGCCCCAAACTCGGTAGAC
15111 ATGATCCTTGTGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATT
521 ATGATCCTTGTGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATT
* *
15176 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACCCTTTAATGGCTACTGGAAGCAAACCTAT
586 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTAT
*
15241 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGCCAATA
651 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATA
15306 TAAGGGCCAAGTACAAGTATGTGCAGCCGTAACC
716 TAAGGGCCAAGTACAAGTATGTGCAGCCGTAACC
* * * * * *
15340 CTCGGTTCGGTCCGATCTTACGCTGGGAATGAACTCCGTATGCTTACACTGGGAATGAACTTCGT
1 CTCGGTCCAGTCCGATCTTACACTGGGAATGAACTACATATGCTTACACTGGGAATGAACTCCGT
15405 AAGCCTAAGTCAACCCAAGAAATGAGCGTACAGGCACTCAGCCAACCAGAGGGGCAGGATGCGTA
66 AAGCCTAAGTCAACCCAAGAAATGAGCGTACAGGCACTCAGCCAACCAGAGGGGCAGGATGCGTA
* * * *
15470 AGCTGGGGATCGGTCGGGTCCCACCCTACGTGCTGCCAATCTTGCTGCCACAACCCTCGGTTCGG
131 AGCTGGGGATCAGCCGGGTCCCACCC-ACGTACTGCCAATCTTGCTACCACAACCCT-GGTTCGG
* * *
15535 TCTAATCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GAGC
194 TCCAATCTTAGACTGGAAATGAACACCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAG-GC
15599 GGGCACTACG-CTGGCCAGAGAGGCGGGATGCGCAA-ACATGGATCGATAAAGTGGTAGGT-GGT
258 GGGCACTACGTC-GG-CAGAGAGGCGGGATGCGCAAGACATGGATCGATAAAGTGGTAGGTGGGT
*
15661 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATG
321 TTAGGCACATCTTCATATTTCTGCCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAACG
* *
15726 GTCCCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
386 GTCCCTTAAGCCTTCATGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTT
* * *
15791 GAAACATTTTACTCTTTGGGATTTTTTTAAAATTTTTTCAGAAGG-AGTTTTGGCCTCACAA-TC
451 GAAACATTTTACGCTTCGGGATTTTTTTAAAATTTTTTCAGAAGGCA-TTTTGGCCCCA-AACTC
** * *
15854 GGTAGAGGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGT
514 GGTAGACATGATCCTTGT-GTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTAT
* * *
15918 ACGGGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGC
578 ACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGC
*
15983 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
643 AAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-G
16047 GGGCCAATATAAGGGCCAAGTAC
707 GGGCCAATATAAGGGCCAAGTAC
16070 CAGCACCCAT
Statistics
Matches: 658, Mismatches: 63, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
749 169 0.26
750 358 0.54
751 111 0.17
752 20 0.03
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (749 bp):
CTCGGTCCAGTCCGATCTTACACTGGGAATGAACTACATATGCTTACACTGGGAATGAACTCCGT
AAGCCTAAGTCAACCCAAGAAATGAGCGTACAGGCACTCAGCCAACCAGAGGGGCAGGATGCGTA
AGCTGGGGATCAGCCGGGTCCCACCCACGTACTGCCAATCTTGCTACCACAACCCTGGTTCGGTC
CAATCTTAGACTGGAAATGAACACCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGG
CACTACGTCGGCAGAGAGGCGGGATGCGCAAGACATGGATCGATAAAGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAACGGTCCC
TTAAGCCTTCATGAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
ATTTTACGCTTCGGGATTTTTTTAAAATTTTTTCAGAAGGCATTTTGGCCCCAAACTCGGTAGAC
ATGATCCTTGTGTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAGGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGAAGCAAACCTAT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATA
TAAGGGCCAAGTACAAGTATGTGCAGCCGTAACC
Found at i:16263 original size:26 final size:26
Alignment explanation
Indices: 16234--16284 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
16224 CTGATCCGAT
* *
16234 CTTACACTGGGAATGCACTCTGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
16260 CTTAGACTGGGAATGAACTCCGTAT
1 CTTACACTGGGAATGAACTCCGTAT
16285 ACCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:18165 original size:851 final size:837
Alignment explanation
Indices: 15474--18493 Score: 3110
Period size: 852 Copynumber: 3.5 Consensus size: 837
15464 TGCGTAAGCT
* * * * * * *
15474 GGGGATCGGTCGGGTCCCACCCTACGTGCTGCCAATCTTGCTGCCACAACCCTCGGT-TCGGTCT
1 GGGGATCGGCCGGGTCCC-CCCTACGTGCTACCGATCCTACTGTCACAACCCTCGGTCT-AGTCT
* ** * *
15538 AATCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GAGCGGG
64 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAG-GCGAG
* * **
15602 CACTACG-CTGGCCAGAGAGGCGGGATGCGCAA-ACATGGATCGATAAAGTGGTAGGT-GGTTTA
128 CACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGTAGGTTTA
**
15664 GGCACATCTTCATATTTCTGCCATGCCAATGCCACTTTTATGGCTTGTAAATTCATACAATGGTC
192 GGCACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15729 CCTTATGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAA
257 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGA--C----TCTATTTTTCACGATTTTTGAA
* ** * * * *
15794 ACATTTTACTCTTTGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCTCACAA-TCGGTA
316 ACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCA-AACTTGGTA
*
15858 GAGGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACG-G
380 GACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTA-GAG
15922 GATTTTGTGACCATTTG-AAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA
444 GATTTTGTGACCATTTGAAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAA
15986 CCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGG
508 CCTGTAAAATCTCAAATGCTC-TTAAGGGGTGTGTAGTTCTCGAGGTTTGATG-GGGATAGGGGG
* * * *
16050 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCCTATGCGCACA-CCCCCCACCCCCAA-
571 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCCCCAAT
** *** * *
16113 -ATG----CC---GTCG--GAAAGGTTCTCCGGCAATGCTCCGGCGATGGTGCCCCGGGCGAAAA
636 CATGAACCCCAATGTCGCCGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGGGAGAAAA
* * ** *
16168 AGTAATGTGGCACC-AGCACATGCCCGAGCCCAGCATGTGCACCTGCAACCCTTGGTCTGATCCG
701 A-AAATGTGGCACCAAGCCCATG-CCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTG----G
*
16232 ATCTTACACTGGGAATGCACTCTGTATGCTTAGACTGGGAATGAACTCCGTATACCTAAGTCAAC
760 ---TT----T--G-AT---C-C--TA--C----ACTGGGAATGAACTCTGTATACCTAAGTCAAC
* ** * * * *
16297 CCA-C-AAAATGAGCGTGCA-GGCGTTCAGCTGGC-CAGAG
803 CCAGCTAAACTG-GCCAG-AGGGGGAT--GAT-GCACA-AC
** ** * ***** * * ** * * *
16334 GGCAGGATATGCAAGCT-AGGGAT-CGGTAGGTCCCCCT-CTGC-GTGCTACCAATCCT-GCTAC
1 GG--GGATCGGCCGGGTCCCCCCTAC-GT-GCTACCGATCCTACTGT-C-A-CAACCCTCGGT-C
* * * ** * * ** * * *
16394 -AG-C-AACCCTCAGTGTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTG
58 TAGTCTGA-TCTTAGACTGG--GAA--TGA-ACTTCGTATG----CC-TAAGCC-AA-CCGAC-G
* * * ** * ** * *
16456 --ATGAAACGAGC-GGACGGGCGAGCAC-TAC-GCCGGCCAGA-GGCG--G-G-ATGCGCAAGCT
109 AAACG-AACGGGCAGG-CGAGC-ACTACGT-CGGCCAGAGAGACGG-GATGCGCAAGC-CATG--
* * * **
16511 G-TGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTGTGCCAATGCCAT
166 GATCGATAG-T---GTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCC-T
* *
16575 TTTTT-TGGCTTGTAAATTCATACAATGGTCCCCTAAGCGTTCATGTGAAGTTTCATGGCAAGAC
226 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAC
* ** * *
16639 GACTCTATTTCTCACGATTTTCAAAACTTTTTACTGTTCGGGATTTTTTTAAAATTTTTTTAGAA
291 GACTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAAATTTTTTCAGAA
* * *
16704 -GAGTTTTGGCCCCAAACTTGGTATACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATT
356 GGAGTTTCGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATT
* * *
16768 CAGCTAAAAACTAGAAGTGTACAGGATTTTGTGACC-TTTTAAAAAAAGTGTCCCCATTTCAGAC
420 CAGCTAAAAACTCGAAGTGTAGAGGATTTTGTGACCATTTGAAAAAAAGTGT-CCCATTTCAGAC
* * * * *
16832 ACTTTGATGGATACTGGCAGCAAACCTGTAAAATCTGAAATGCTATTTAAGGGGGGTGTGAGTTC
484 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTAAGGGGTGTGT-AGTTC
16897 TCGAGGTTTGATGGGGGATA--GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
547 TCGAGGTTTGAT-GGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * * *
16960 GTGATCACACCCCCCACCCCCCCAATCGCTGGAACCCCAATGCCACCGGTCAGGTTCTCCGATGA
611 GTGCGCACACCCCCC-CCCCCCCAATC-AT-GAACCCCAATGTCGCC-GTCAGGTTCTCCGATGA
17025 TGCTCCAGCGATGGTGCCCCAGGCGA-AAAAAAAATGTGGCACCAA-CCCATGCCGAGCCCAGCA
672 TGCTCCAGCGATGGTGCCCC-GG-GAGAAAAAAAATGTGGCACCAAGCCCATGCCGAGCCCAGCA
* *
17088 TGTGCACCCACAACCCTCGGTCCGG-TCGATCCTACACTGGGAATGAACTCTGTATACCTAAGTC
735 TGTGCACCCACAACCCTCGGTCTGGTTTGATCCTACACTGGGAATGAACTCTGTATACCTAAGTC
* *** *
17152 AACCCATGCTTAACCAACCAGAGGGGGAGGATGCACAATC
800 AACCCA-GCTAAACTGGCCAGAGGGGGATGATGCACAA-C
* * * * *
17192 GGGGATCGGTCGGGTCCCCTCTTACGTGCTATCGATCCTACTGTCGCAACCCTCGGTCTAGTCCG
1 GGGGATCGGCCGGGTCCCC-CCTACGTGCTACCGATCCTACTGTCACAACCCTCGGTCTAGTCTG
* *
17257 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGGCGAAA-TAAGCGGGCAGGCGAGC
65 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAA-CGGGCAGGCGAGC
* * *
17321 ACTACGTCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGTGTGGTAGGTAGGTTTAGG
129 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGTAGGTTTAGG
17386 CACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCC
194 CACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
17451 TTAAGCCTTCTTGTGAAGTTTCATGGCAAGATGACTCTATTTTTCATGATTTTTGAAACTTTTTA
259 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCTATTTTTCACGATTTTTGAAACTTTTTA
*
17516 CGGTTCGAGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATC
324 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATC
* * * * *
17581 TTTGTATTTTTGTTTGCATGCATAAAAAATTCCAGCTAAAAACTCGAAGTGTAGATGATTTTGGC
389 CTTGTATTTTTGTTGGCATGCAAAAAAAATT-CAGCTAAAAACTCGAAGTGTAGAGGATTTT-GT
* * *
17646 GACCATTTGAAAAAAAGTGTCCCATTTCGGACACTTTAACGGCTACTGGCAGCAAAACTGTAAAA
452 GACCATTTGAAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
17711 TCTCAAAAATGCTCTTAAGGGGTGTGTAGTTATCGAGGTTTGATGGGGATAGGGGGCCAATAATA
517 TCTC--AAATGCTCTTAAGGGGTGTGTAGTTCTCGAGGTTTGATGGGGATAGGGGGCCAAT-ATA
17776 AGGGCCAAGTACCAGCACCCAATCGCACATCATGTGCGCACACCCCCCGCCCCCCCAATTTCATC
579 AGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACACCCCCC-CCCCCCCAA--TCAT-
17841 GAACCCCAATGTGCGCCGTCAGGTTTCTCTCGATGATTGC-CCAGCGATGGTGCCCCGGGAGAAA
639 GAACCCCAATGT-CGCCGTCAGG-TTCTC-CGATGA-TGCTCCAGCGATGGTGCCCCGGGAGAAA
* *
17905 AAAAATGTCGCACCAAGCCCATGCTGAG-CCAGCATGTGCACCCACAACCCTCGGTCTGGTTTGA
700 AAAAATGTGGCACCAAGCCCATGCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTTTGA
*
17969 TCCTACACTGGGAATGAACTCTGTATACCTAAGTCAACCCACGCTCAACTGGCCAGAGGGGGATG
765 TCCTACACTGGGAATGAACTCTGTATACCTAAGTCAACCCA-GCTAAACTGGCCAGAGGGGGATG
18034 ATGCACAAC
829 ATGCACAAC
* *
18043 GGGGATCGGCCGGGTCCCCCCTTACGTGCTACCGATCCTACTGTCGCAACCCTCGGTCTGGTCTG
1 GGGGATCGGCCGGGTCCCCCC-TACGTGCTACCGATCCTACTGTCACAACCCTCGGTCTAGTCTG
* * * * *
18108 ATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAATCGATGAAATGAACGGGCAGGCGGGCA
65 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGAGCA
18173 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGTAGGGTTTAGG
130 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGTA-GGTTTAGG
18238 CACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCC
194 CACATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
18303 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCTATTTTTCATGATTTTTGAAACTTTTTA
259 TTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCTATTTTTCACGATTTTTGAAACTTTTTA
* * *
18368 TGGTTTGGGATTTTTTTTAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATC
324 CGGTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATC
* *
18433 CTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTAGATGATTT
389 CTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTAGAGGATTT
Statistics
Matches: 1808, Mismatches: 234, Indels: 244
0.79 0.10 0.11
Matches are distributed among these distances:
843 6 0.00
844 166 0.09
845 90 0.05
846 83 0.05
847 43 0.02
848 42 0.02
849 39 0.02
850 24 0.01
851 228 0.13
852 349 0.19
853 18 0.01
854 2 0.00
856 16 0.01
857 11 0.01
858 55 0.03
859 9 0.00
860 23 0.01
861 11 0.01
862 16 0.01
864 4 0.00
865 6 0.00
866 1 0.00
867 1 0.00
868 3 0.00
869 52 0.03
870 225 0.12
871 21 0.01
872 54 0.03
873 5 0.00
874 2 0.00
875 10 0.01
876 95 0.05
877 5 0.00
880 2 0.00
881 1 0.00
883 2 0.00
885 32 0.02
886 47 0.03
887 8 0.00
888 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (837 bp):
GGGGATCGGCCGGGTCCCCCCTACGTGCTACCGATCCTACTGTCACAACCCTCGGTCTAGTCTGA
TCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCAGGCGAGCAC
TACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGTGTGGTAGGTAGGTTTAGGCA
CATCTTCATATTTCTGCCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCTATTTTTCACGATTTTTGAAACTTTTTACG
GTTCGGGATTTTTTTAAAATTTTTTCAGAAGGAGTTTCGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTAGAGGATTTTGTGACC
ATTTGAAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTAAGGGGTGTGTAGTTCTCGAGGTTTGATGGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCCCCCCAATCATGAACCCCAATGT
CGCCGTCAGGTTCTCCGATGATGCTCCAGCGATGGTGCCCCGGGAGAAAAAAAATGTGGCACCAA
GCCCATGCCGAGCCCAGCATGTGCACCCACAACCCTCGGTCTGGTTTGATCCTACACTGGGAATG
AACTCTGTATACCTAAGTCAACCCAGCTAAACTGGCCAGAGGGGGATGATGCACAAC
Done.