Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168465.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_675, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12704
ACGTcount: A:0.19, C:0.33, G:0.49, T:0.00
Found at i:97 original size:44 final size:44
Alignment explanation
Indices: 1--1647 Score: 2447
Period size: 44 Copynumber: 37.8 Consensus size: 44
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
44 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
88 GGGCCGCGACCACCAGCGGCACACGC-GGGCCC-GGGGC-GGCAG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
*
130 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
174 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
217 CGGGCCGCGACCACCAGCGGCACACGCGGGGCCC-GGGGC-GGCG
1 -GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
260 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
304 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
347 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
*
392 GGGCCGCGACCACCAGCGGCACACGCGGGGCCC-GGGGC-GGCGG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
*
435 GGGCCGCGAGCACCAGCGGCACACG-GCGGCCC-GGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
477 GGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
519 GGGCCGCGACCACCAGCGGCACACGC-GGGCCC-GGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
561 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCAG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
*
605 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCAG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
*
649 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
693 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
736 GGGCCGCGACCACCAGCGGCACACGCGGGGCCC-GGGGC-GGC-
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
777 GGGCCGCGACCACCAGCGGCACACGC-GGGCCCGGGGGC-GGCAGG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC--G
*
821 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
864 CGGGCCGCGAGCACCAGCGGCACACGC-GGGCCC--GGGCGGGCG
1 -GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
906 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCGG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
* * * * **
950 GGGCCGCGCAGCGGCGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCG-AGC-AC--CAGCG-GCA-CA-C-G----CGGGGCC--CGGGGGCGGGCG
1008 CGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 -GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
1053 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1096 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGC-GGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1138 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGCGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCG-GGCG
1182 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1226 CGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCAG
1 -GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
1271 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGC-GG-G
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1312 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCAG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-G
1356 GGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGGC-GGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1397 GGGCCGCGAGCACCAGCGGCACACGC-GGG-CCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1439 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
1482 GGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGGC-CG-G
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
**
1522 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCCAGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1565 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
1609 GGGCCGCGAGCACCAGCGGCACACGCGGGCGCGCCGGGG
1 GGGCCGCGAGCACCAGCGGCACACGCGGG-GC-CCGGGG
1648 CGCGCCACCA
Statistics
Matches: 1514, Mismatches: 28, Indels: 121
0.91 0.02 0.07
Matches are distributed among these distances:
40 35 0.02
41 155 0.10
42 297 0.20
43 301 0.20
44 550 0.36
45 118 0.08
46 7 0.00
47 4 0.00
48 4 0.00
49 2 0.00
50 2 0.00
51 2 0.00
52 2 0.00
53 2 0.00
54 2 0.00
55 4 0.00
56 4 0.00
57 1 0.00
58 11 0.01
59 11 0.01
ACGTcount: A:0.12, C:0.38, G:0.50, T:0.00
Consensus pattern (44 bp):
GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
Found at i:320 original size:174 final size:172
Alignment explanation
Indices: 1--1649 Score: 2531
Period size: 174 Copynumber: 9.5 Consensus size: 172
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCAC
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCAC
*
66 ACGCGGGGCCCGGGGGCGGGCGGGGCCGCGACCACCAGCGGCACACGC-GGGCCC-GGGGCGGCA
66 ACGCGGGGCCC-GGGGC-GGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGC-
*
129 GGGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
128 GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
174 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGCGGGCCGCGACCACCAGCGGCA
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCG-GGGCCGCGACCACCAGCGGCA
239 CACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
65 CACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCG
304 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGCG
129 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
347 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGGGGGCCGCGACCACCAGCGGC
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGC-GGGGCCGCGACCACCAGCGGC
*
412 ACACGCGGGGCCCGGGGCGGCGGGGGCCGCGAGCACCAGCGGCACACG-GCGGCCC-GGGGCGGG
64 ACACGCGGGGCCCGGGGCGGC-GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGC-GG
475 CGGGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGGCGGGCG
127 CGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
519 GGGCCGCGACCACCAGCGGCACACGC-GGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCAC
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCAC
*
583 ACGCGGGGCCCGGGGGCGGCAGGGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGCA
66 ACGCGGGGCCC-GGGGCGGC-GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGC-
*
648 GGGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
128 GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
693 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGC-GGGCCGCGACCACCAGCGGCA
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGCGGGGCCGCGACCACCAGCGGCA
*
757 CACGCGGGGCCCGGGGCGGC-GGGCCGCGACCACCAGCGGCACACGC-GGGCCCGGGGGCGGCAG
65 CACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGC--
*
820 GGGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCG
128 GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
864 CGGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGCGGGCGGGGCCGCGAGCACCAGCGGCA
1 -GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCA
927 CACGCGGGGCCCGGGGGCGGCGGGGGCCGCGCAGCGGCGGCCGCGACCACCAGCGGCACACGCGG
65 CACGCGGGGCCC-GGGGCGGC-GGGGCCGCG-A-----------G--CACCAGCGGCACACGCGG
992 GGCCCGGGGGCGGGCGCGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
114 GGCCCGGGGGC-GGCG-GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
* *
1053 GGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGG-GCGGCGGGGCCGCGAGCACCAGCGGCA
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCG-GGCGGGGCCGCGACCACCAGCGGCA
1117 CACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGCGGCG
65 CACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGG-GCGGCG
1182 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
129 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
1226 CGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGG-GCGGCAGGGGCCGCGAGCACCAGCGG
1 -GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCG-GGC-GGGGCCGCGACCACCAGCGG
1290 CACACGCGGGGCCCGGGGCGG-GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGC
63 CACACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGC
1354 AGGGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGGC-GGCG
128 -GGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
* *
1397 GGGCCGCGAGCACCAGCGGCACACGC-GGGCCGGGGGCGGGCGGGGCCGCGAGCACCAGCGGCAC
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCAC
*
1461 ACGCGGGGCCCGGGGGCGG-GCGGGCCGCGAGCACCAGCGGCACACGC-GGGCCC-GGGGCCG-G
66 ACGCGGGGCCC-GGGGCGGCG-GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGCG
**
1522 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCCAGCG
129 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
*
1565 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGGGGCCGCGAGCACCAGCGGCA
1 GGGCCGCGAGCACCAGCGGCACACGCGGGGCCC-GGGGCGGGCGGGGCCGCGACCACCAGCGGCA
1630 CACGCGGGCGCGCCGGGGCG
65 CACGCGGG-GC-CCGGGGCG
1650 CGCCACCAGG
Statistics
Matches: 1402, Mismatches: 19, Indels: 112
0.91 0.01 0.07
Matches are distributed among these distances:
166 27 0.02
167 11 0.01
168 69 0.05
169 73 0.05
170 166 0.12
171 60 0.04
172 200 0.14
173 201 0.14
174 309 0.22
175 112 0.08
176 10 0.01
187 18 0.01
188 84 0.06
189 22 0.02
190 40 0.03
ACGTcount: A:0.12, C:0.38, G:0.50, T:0.00
Consensus pattern (172 bp):
GGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGCGGGCGGGGCCGCGACCACCAGCGGCAC
ACGCGGGGCCCGGGGCGGCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGCGGG
GCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCG
Found at i:978 original size:58 final size:58
Alignment explanation
Indices: 903--1016 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
893 GCCCGGGCGG
* *
903 GCGGGGCCGCGAGCACCAGCGGCACACGCGGGGCCCGGGGGC-GGCGGGGGCCGCGCA
1 GCGGGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGCGGGCCGCGCA
960 GCGGCGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGCGGGCCGCG
1 GCGG-GGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGCGGGCCGCG
1017 AGCACCAGCG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
57 4 0.08
58 37 0.70
59 12 0.23
ACGTcount: A:0.10, C:0.39, G:0.52, T:0.00
Consensus pattern (58 bp):
GCGGGGCCGCGACCACCAGCGGCACACGCGGGGCCCGGGGGCGGGCGCGGGCCGCGCA
Found at i:1870 original size:85 final size:85
Alignment explanation
Indices: 1653--3798 Score: 2857
Period size: 85 Copynumber: 24.9 Consensus size: 85
1643 CGGGGCGCGC
*
1653 CACCAGGG--CAGCGGGGGCCGAGGGGCGCGAGGGCAA-CGCCCGCACCAGGG--CAGGGGGGCC
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGA-GGCAACCGCCCGCACCAGGGCCCAGCGGGGCC
*
1713 GAGGGGGCGCGAGGCAACCG-GG
64 GAGGGGG-GCGAGGCAACCGCCG
1735 CACCAGGG-CCAG-GGGGCCGAGGGGCGCGAGGCAACCGGCCCGCACCAGGGCCCAGCGGGGGCC
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACC-GCCCGCACCAGGGCCCAGC-GGGGCC
1798 GA-GGGGGCGAGGCAACCGCCG
64 GAGGGGGGCGAGGCAACCGCCG
1819 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
1884 GGGGGCGCGAGGCAACCGCCG
66 GGGGG-GCGAGGCAACCGCCG
*
1905 CACCAGGG-CCAGCGGGGGCCGAGGGGCGCGAGGCAACCGGCCGCACCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
*
1969 AGGGGCGCGAGGCAA-CGCCCG
65 AGGGGGGCGAGGCAACCG-CCG
1990 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCG-CCGCACCAGGGCCCAGCGGGGCCGA
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
* *
2054 GGGGCGCGAGGCAAGCGCCCG
66 GGGGGGCGAGGCAACCG-CCG
*
2075 CACCAGGGCCCAGCGGGGCCGAGGGG-GCGAGGCAAGCGCCCGCACCAGGGCCCAGCGGGGCCGA
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
2139 -GGGGGCGAGGCAACCGGCCG
66 GGGGGGCGAGGCAACC-GCCG
2159 CACCAGGGCCCAGCGGGGCCGAGGGGGCGCGAGGCAACCG-CCGCACCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
*
2223 AGGGGCGCGAGGCAA-CGCCG
65 AGGGGGGCGAGGCAACCGCCG
*
2243 CACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGCAAGCGCCCGCACCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
** **
2308 A-GGGGGCGAGGCGGCCGAGGGGG
65 AGGGGGGCGAGGCAACC---GCCG
* * * * * * *
2331 CGAGGCAACCGGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAACCGACCGCACCA
1 C-A--CCA-GGGCC-CAGC-GGGGCC-G-AGGGG-CG-C-------GAGGCAACCGCCCGCACCA
* * *
2396 GGGCCGAGCGGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
49 GGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCG-CCG
2435 CACCAGGGCCCAGCGGGGGCCGAGGGG-GCGAGGCAACCG-CCGCACCAGGGCCCAGCGGGGGCC
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGCC
2498 GAGGGGGCGCGAGGCAACCGGCCG
64 GAGGGGG-GCGAGGCAACC-GCCG
* *
2522 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCGCACCAGGGCCCAGCGGGGGCC
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGCC
2587 GAGGGGGGCGAGGCAACCGCCG
64 GAGGGGGGCGAGGCAACCGCCG
*
2609 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCGCACCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
2673 AGGGGGGCGAGGCAACCGGCCG
65 AGGGGGGCGAGGCAACC-GCCG
*
2695 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCG-CCGCACCAGGG-CCAGCGGGGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGCCG
*
2758 AGGGGGGCGAGGCAAGCGCCCG
65 AGGGGGGCGAGGCAACCG-CCG
2780 CACCAGGGCCCAGCGGGTGCCGAGGGGGCGCGAGGCAACCG-CCGCACCAGGGCCCAG-GGGGCC
1 CACCAGGGCCCAGCGGG-GCCGA-GGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCC
2843 GAGGGGGGGCGAGGCAACCGCCG
64 GA-GGGGGGCGAGGCAACCGCCG
*
2866 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
2931 GGGGGGCGAGGCAACCGCCCG
66 GGGGGGCGAGGCAACCG-CCG
*
2952 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCGCACCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
3016 AGGGGGGCGAGGCAACCGCCG
65 AGGGGGGCGAGGCAACCGCCG
*
3037 CACCAGGG--CAGCGGGGCCGAGGGG-GCGAGGCAAGCG-CCGCACCAGGGCCCAGCGGGGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGCCG
3098 AGGGGGGCGAGGCAACCGCCG
65 AGGGGGGCGAGGCAACCGCCG
* *
3119 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAA--GGCCGCACCAGGGCCCAGCGGGGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGCCG
3182 A-GGGGGCGAGGCAACCGCCG
65 AGGGGGGCGAGGCAACCGCCG
3202 CACCAGGGCCCAGCGGGGCCGAGGGG-GCGAGGCAACCG-CCGCACCAGGGCCCAGCGGGGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGCCG
3265 A-GGGGGCGAGGCAACCGGCCG
65 AGGGGGGCGAGGCAACC-GCCG
* *
3286 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCGCACCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
*
3351 AGGGGGGCGAGGCAAGCGCCCG
65 AGGGGGGCGAGGCAACCG-CCG
3373 CACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGG-CCAGCGGGGCC-
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
*
3436 -GGGGGGCGAGGCAAGCGCCCG
65 AGGGGGGCGAGGCAACCG-CCG
* *
3457 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAAGCGCCCGCACCAGGGCCCAGC--GGCCGA
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
*
3520 GGGGGGCGAGGCAAGCGCCCG
66 GGGGGGCGAGGCAACCG-CCG
* * *
3541 CACCAGGGCCCAGCGGGGCCGAGGGGGAGCGAGGCAACCGGCCGCGCCAGGGCCCAGCGGGGCCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCG
*
3606 AGGGGGAGCGGGGCAACCGGCCG
65 AGGGGG-GCGAGGCAACC-GCCG
* * *
3629 CACCAGGGCCCAGGGGCGGCCGAGGGGGCGCGAGGCAACCGCCCGCACCAAGGCGCAGCAGGGGC
1 CACCAGGGCCCAGCGG-GGCCGA-GGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGC-GGGGC
* * *
3694 CGCGGGGAGCGAGGCAACAAC-CCA
63 CGAGGGGGGCGAGGCAAC--CGCCG
* ** * *
3718 CACCAGGGCCCAGCGGGGCCGAGGGCGGGCGAGGCAAGGGCCCGGACCGAAGGG--CAGCCGAGG
1 CACCAGGGCCCAGCGGGGCCGAGGG-GCGCGAGGCAACCGCCCGCACC--AGGGCCCAG-CGGGG
3781 CCGAGGAGGGGCGAGGCA
62 CCGAGG-GGGGCGAGGCA
3799 GGGGCCAGCA
Statistics
Matches: 1895, Mismatches: 79, Indels: 173
0.88 0.04 0.08
Matches are distributed among these distances:
80 5 0.00
81 46 0.02
82 82 0.04
83 141 0.07
84 324 0.17
85 411 0.22
86 324 0.17
87 259 0.14
88 92 0.05
89 107 0.06
90 14 0.01
91 3 0.00
92 4 0.00
93 8 0.00
94 1 0.00
95 5 0.00
96 2 0.00
97 4 0.00
98 1 0.00
99 8 0.00
100 4 0.00
101 2 0.00
103 2 0.00
104 27 0.01
105 8 0.00
106 11 0.01
ACGTcount: A:0.17, C:0.35, G:0.48, T:0.00
Consensus pattern (85 bp):
CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGCCGA
GGGGGGCGAGGCAACCGCCG
Found at i:1877 original size:43 final size:43
Alignment explanation
Indices: 1653--3754 Score: 2817
Period size: 42 Copynumber: 48.8 Consensus size: 43
1643 CGGGGCGCGC
1653 CACCAGGG--CAGCGGGGGCCGAGGGGCGCGAGGGCAA-CGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGA-GGCAACCGCCCG
* *
1695 CACCAGGG--CAGGGGGGCCGAGGGGGCGCGAGGCAACCG--GG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCG
1735 CACCAGGG-CCAG-GGGGCCGAGGGGCGCGAGGCAACCGGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACC-GCCCG
1777 CACCAGGGCCCAGCGGGGGCCGAGGGG-GCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
1819 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
1862 CACCAGGGCCCAGCGGGGCCGAGGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCG
*
1905 CACCAGGG-CCAGCGGGGGCCGAGGGGCGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
1948 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAA-CGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
1990 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2032 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2075 CACCAGGGCCCAGCGGGGCCGAGGGG-GCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2117 CACCAGGGCCCAGCGGGGCCGAGGGG-GCGAGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
2159 CACCAGGGCCCAGCGGGGCCGAGGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCG
2202 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAA-CG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2243 CACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
** ***
2287 CACCAGGGCCCAGCGGGGCCGAGGGG-GCGAGGCGGCCGAGGGGG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACC--GCCCG
* * * * * * *
2331 CGAGGCAACCGGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAACCGACCG
1 C-A--CCA-GGGCC-CAGC-GGGGCC-G-AGGGG-CG-C-------GAGGCAACCGCCCG
* *
2391 CACCAGGGCCGAGCGGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
2435 CACCAGGGCCCAGCGGGGGCCGAGGGG-GCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2477 CACCAGGGCCCAGCGGGGGCCGAGGGGGCGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGC-GGGGCCGA-GGGGCGCGAGGCAACCGCCCG
* *
2522 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2566 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2609 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
2652 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2695 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
2737 CACCAGGG-CCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
2780 CACCAGGGCCCAGCGGGTGCCGAGGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGG-GCCGA-GGGGCGCGAGGCAACCGCCCG
*
2824 CACCAGGGCCCAG-GGGGCCGAGGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCG
*
2866 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2909 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2952 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
2995 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
3037 CACCAGGG--CAGCGGGGCCGAGGGG-GCGAGGCAAGCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
3076 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
3119 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAA--GGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
3160 CACCAGGGCCCAGCGGGGGCCGAGGGG-GCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
3202 CACCAGGGCCCAGCGGGGCCGAGGGG-GCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
3243 CACCAGGGCCCAGCGGGGGCCGAGGGG-GCGAGGCAACCGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
3286 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
3330 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
3373 CACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
3417 CACCAGGG-CCAGCGGGGCCG-GGGG-GCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
3457 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
3500 CACCAGGGCCCAGC--GGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
* *
3541 CACCAGGGCCCAGCGGGGCCGAGGGGGAGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCG
* * * *
3585 CGCCAGGGCCCAGCGGGGCCGAGGGGGAGCGGGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGCGCGAGGCAACCGCCCG
*
3629 CACCAGGGCCCAGGGGCGGCCGAGGGGGCGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGG-GGCCGA-GGGGCGCGAGGCAACCGCCCG
* * * * ** *
3674 CACCAAGGCGCAGCAGGGGCCGCGGGGAGCGAGGCAACAACCCA
1 CACCAGGGCCCAGC-GGGGCCGAGGGGCGCGAGGCAACCGCCCG
*
3718 CACCAGGGCCCAGCGGGGCCGAGGGCGGGCGAGGCAA
1 CACCAGGGCCCAGCGGGGCCGAGGG-GCGCGAGGCAA
3755 GGGCCCGGAC
Statistics
Matches: 1912, Mismatches: 73, Indels: 148
0.90 0.03 0.07
Matches are distributed among these distances:
39 38 0.02
40 58 0.03
41 180 0.09
42 561 0.29
43 528 0.28
44 399 0.21
45 95 0.05
46 2 0.00
47 2 0.00
48 4 0.00
49 3 0.00
50 5 0.00
51 1 0.00
52 6 0.00
53 4 0.00
54 2 0.00
55 7 0.00
56 4 0.00
57 2 0.00
59 1 0.00
60 3 0.00
62 7 0.00
ACGTcount: A:0.17, C:0.35, G:0.48, T:0.00
Consensus pattern (43 bp):
CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
Found at i:2303 original size:44 final size:43
Alignment explanation
Indices: 1653--3798 Score: 2909
Period size: 43 Copynumber: 49.8 Consensus size: 43
1643 CGGGGCGCGC
*
1653 CACCAGGG--CAGCGGGGGCCGAGGGGCGCGAGGGCAA-CGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGA-GGCAACCGCCCG
* *
1695 CACCAGGG--CAGGGGGGCCGAGGGGGCGCGAGGCAACCG--GG
1 CACCAGGGCCCAGCGGGGCCGAGGGGG-GCGAGGCAACCGCCCG
*
1735 CACCAGGG-CCAG-GGGGCCGAGGGGCGCGAGGCAACCGGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACC-GCCCG
1777 CACCAGGGCCCAGCGGGGGCCGA-GGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
1819 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
1862 CACCAGGGCCCAGCGGGGCCGAGGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGG-GCGAGGCAACCGCCCG
* *
1905 CACCAGGG-CCAGCGGGGGCCGAGGGGCGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
1948 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAA-CGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
1990 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
* *
2032 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
2075 CACCAGGGCCCAGCGGGGCCGA-GGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
2117 CACCAGGGCCCAGCGGGGCCGA-GGGGGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
2159 CACCAGGGCCCAGCGGGGCCGAGGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGG-GCGAGGCAACCGCCCG
*
2202 CACCAGGGCCCAGCGGGGCCGAGGGGCGCGAGGCAA-CG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
* *
2243 CACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
** ***
2287 CACCAGGGCCCAGCGGGGCCGA-GGGGGCGAGGCGGCCGAGGGGG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACC--GCCCG
* * * * * *
2331 CGAGGCAACCGGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAACCGACCG
1 C-A--CCA-GGGCC-CAGC-GGG----GCCGAG-----GGG-G-GCGAGGCAACCGCCCG
* * *
2391 CACCAGGGCCGAGCGGGGGCCGAGGGGCGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
2435 CACCAGGGCCCAGCGGGGGCCGA-GGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
2477 CACCAGGGCCCAGCGGGGGCCGAGGGGGCGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGG-GCGAGGCAACCGCCCG
*
2522 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
2566 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
2609 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
2652 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
2695 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
2737 CACCAGGG-CCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
2780 CACCAGGGCCCAGCGGGTGCCGAGGGGGCGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGG-GCCGAGGGGG-GCGAGGCAACCGCCCG
2824 CACCAGGGCCCAG-GGGGCCGAGGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGA-GGGGGGCGAGGCAACCGCCCG
2866 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
2909 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
2952 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
2995 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3037 CACCAGGG--CAGCGGGGCCGA-GGGGGCGAGGCAAGCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
3076 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3119 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAA--GGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
3160 CACCAGGGCCCAGCGGGGGCCGA-GGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
3202 CACCAGGGCCCAGCGGGGCCGA-GGGGGCGAGGCAACCG-CCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3243 CACCAGGGCCCAGCGGGGGCCGA-GGGGGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3286 CACCAGGGCCCAGCGGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3330 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3373 CACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3417 CACCAGGG-CCAGCGGGGCC--GGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3457 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3500 CACCAGGGCCCAGC--GGCCGAGGGGGGCGAGGCAAGCGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
*
3541 CACCAGGGCCCAGCGGGGCCGAGGGGGAGCGAGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGG-GCGAGGCAACCGCCCG
* * *
3585 CGCCAGGGCCCAGCGGGGCCGAGGGGGAGCGGGGCAACCGGCCG
1 CACCAGGGCCCAGCGGGGCCGAGGGGG-GCGAGGCAACCGCCCG
*
3629 CACCAGGGCCCAGGGGCGGCCGAGGGGGCGCGAGGCAACCGCCCG
1 CACCAGGGCCCAGCGG-GGCCGAGGGGG-GCGAGGCAACCGCCCG
* * * * ** *
3674 CACCAAGGCGCAGCAGGGGCCGCGGGGAGCGAGGCAACAACCCA
1 CACCAGGGCCCAGC-GGGGCCGAGGGGGGCGAGGCAACCGCCCG
**
3718 CACCAGGGCCCAGCGGGGCCGAGGGCGGGCGAGGCAAGGGCCCG
1 CACCAGGGCCCAGCGGGGCCGAGGG-GGGCGAGGCAACCGCCCG
* *
3762 GACCGAAGGG--CAGCCGAGGCCGAGGAGGGGCGAGGCA
1 CACC--AGGGCCCAG-CGGGGCCGAGG-GGGGCGAGGCA
3799 GGGGCCAGCA
Statistics
Matches: 1939, Mismatches: 85, Indels: 157
0.89 0.04 0.07
Matches are distributed among these distances:
39 37 0.02
40 62 0.03
41 179 0.09
42 537 0.28
43 550 0.28
44 401 0.21
45 116 0.06
46 10 0.01
47 2 0.00
48 4 0.00
49 3 0.00
50 3 0.00
51 4 0.00
54 3 0.00
55 5 0.00
56 4 0.00
57 2 0.00
59 1 0.00
60 6 0.00
61 1 0.00
62 9 0.00
ACGTcount: A:0.17, C:0.35, G:0.48, T:0.00
Consensus pattern (43 bp):
CACCAGGGCCCAGCGGGGCCGAGGGGGGCGAGGCAACCGCCCG
Found at i:2323 original size:17 final size:17
Alignment explanation
Indices: 2303--2336 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
2293 GGCCCAGCGG
2303 GGCCGAGGGGGCGAGGC
1 GGCCGAGGGGGCGAGGC
2320 GGCCGAGGGGGCGAGGC
1 GGCCGAGGGGGCGAGGC
2337 AACCGGCCGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.65, T:0.00
Consensus pattern (17 bp):
GGCCGAGGGGGCGAGGC
Found at i:2350 original size:103 final size:105
Alignment explanation
Indices: 2218--2425 Score: 343
Period size: 103 Copynumber: 2.0 Consensus size: 105
2208 GGCCCAGCGG
*
2218 GGCCGAGGGGCGCGAGGCAACGCCGCACCAGGGCCCAGCGGGGGCCGAGGG-GCGCGAGGCAAGC
1 GGCCGAGGGGCGCGAGGCAACGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAACC
*
2282 GCCCGCACCAGGGCCCAGC-GGGGCCGAGGGG-GCGAGGC
66 GACCGCACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGC
2320 GGCCGAGGGG-GCGAGGCAACCGGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAA
1 GGCCGAGGGGCGCGAGGCAA-C-GCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAA
*
2384 CCGACCGCACCAGGGCCGAGCGGGGGCCGAGGGGCGCGAGGC
64 CCGACCGCACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGC
2426 AAGCGCCCGC
Statistics
Matches: 98, Mismatches: 3, Indels: 6
0.92 0.03 0.06
Matches are distributed among these distances:
101 9 0.09
102 11 0.11
103 30 0.31
104 29 0.30
105 12 0.12
106 7 0.07
ACGTcount: A:0.16, C:0.34, G:0.50, T:0.00
Consensus pattern (105 bp):
GGCCGAGGGGCGCGAGGCAACGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGCAACC
GACCGCACCAGGGCCCAGCGGGGGCCGAGGGGCGCGAGGC
Found at i:2353 original size:59 final size:63
Alignment explanation
Indices: 2260--2381 Score: 198
Period size: 59 Copynumber: 2.0 Consensus size: 63
2250 GCCCAGCGGG
*
2260 GGCCGAGGGGCGCGAGGCAAGCGCCCGCACCAGGGCCCAGC-GGGGCCGAGGG-G-GCGAGGC
1 GGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGC
*
2320 GGCCGAGGGG-GCGAGGCAACCGGCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGC
1 GGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGC
2382 AACCGACCGC
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
59 28 0.49
60 21 0.37
61 1 0.02
62 7 0.12
ACGTcount: A:0.15, C:0.33, G:0.52, T:0.01
Consensus pattern (63 bp):
GGCCGAGGGGCGCGAGGCAACCGCCCGCACCAGGGCCCAGCGGGGGCCGAGGGTGCGCGAGGC
Found at i:3225 original size:33 final size:34
Alignment explanation
Indices: 3183--3310 Score: 96
Period size: 41 Copynumber: 3.3 Consensus size: 34
3173 CGGGGGCCGA
3183 GGGGG-CGAGGCAACCGCCGCACCAGGGCCCAGCGGGGCC
1 GGGGGCCGAGGCAACCGCCGCACCAGGGCCCA-----G-C
*
3222 GAGGGGGCGAGGCAACCGCCGCACCAGGGCCCAGC
1 G-GGGGCCGAGGCAACCGCCGCACCAGGGCCCAGC
3257 GGGGGCCGAGGGGGCGAGGCAACCGGCCGCACCAGGGCCCAGC
1 GGGGG-C-------CGAGGCAACC-GCCGCACCAGGGCCCAGC
3300 GGGGGCCGAGG
1 GGGGGCCGAGG
3311 GGGGCGAGGC
Statistics
Matches: 77, Mismatches: 1, Indels: 26
0.74 0.01 0.25
Matches are distributed among these distances:
34 4 0.05
35 7 0.09
36 1 0.01
39 1 0.01
40 4 0.05
41 26 0.34
42 11 0.14
43 23 0.30
ACGTcount: A:0.16, C:0.35, G:0.48, T:0.00
Consensus pattern (34 bp):
GGGGGCCGAGGCAACCGCCGCACCAGGGCCCAGC
Found at i:3508 original size:23 final size:23
Alignment explanation
Indices: 3482--3549 Score: 56
Period size: 23 Copynumber: 3.2 Consensus size: 23
3472 GGGCCGAGGG
3482 GGGCGAGGCAAGCGCCCGCACCA
1 GGGCGAGGCAAGCGCCCGCACCA
* * ***
3505 GGGC----CCAGCGGCCG-AGGG
1 GGGCGAGGCAAGCGCCCGCACCA
3523 GGGCGAGGCAAGCGCCCGCACCA
1 GGGCGAGGCAAGCGCCCGCACCA
3546 GGGC
1 GGGC
3550 CCAGCGGGGC
Statistics
Matches: 30, Mismatches: 10, Indels: 10
0.60 0.20 0.20
Matches are distributed among these distances:
18 5 0.17
19 8 0.27
22 8 0.27
23 9 0.30
ACGTcount: A:0.18, C:0.37, G:0.46, T:0.00
Consensus pattern (23 bp):
GGGCGAGGCAAGCGCCCGCACCA
Found at i:3819 original size:45 final size:45
Alignment explanation
Indices: 3734--3849 Score: 121
Period size: 45 Copynumber: 2.6 Consensus size: 45
3724 GGCCCAGCGG
* * * *
3734 GGCCGAGG-GCGGGCGAGGCAAGGGCCCGGACCGAAGGGCAGCCGA
1 GGCCGAGGAG-GGGCGAGGCAGGGGCCAGCACCGAAGGGCAGCAGA
* *
3779 GGCCGAGGAGGGGCGAGGCAGGGGCCAGCACC-AGGCGGCAGCAGG
1 GGCCGAGGAGGGGCGAGGCAGGGGCCAGCACCGAAG-GGCAGCAGA
*
3824 GGCC-AGGGAGGGGCGAGGCCGGGGCC
1 GGCCGA-GGAGGGGCGAGGCAGGGGCC
3850 GAAGGGCGAG
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
44 3 0.05
45 57 0.93
46 1 0.02
ACGTcount: A:0.18, C:0.28, G:0.54, T:0.00
Consensus pattern (45 bp):
GGCCGAGGAGGGGCGAGGCAGGGGCCAGCACCGAAGGGCAGCAGA
Found at i:3907 original size:15 final size:17
Alignment explanation
Indices: 3877--3910 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
3867 ACGGGGCCCA
3877 GGCGGGGCGCCAGCAGG
1 GGCGGGGCGCCAGCAGG
3894 GGCGGGG-GCC-GCAGG
1 GGCGGGGCGCCAGCAGG
3909 GG
1 GG
3911 GGCACGCGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 3 0.18
17 7 0.41
ACGTcount: A:0.09, C:0.26, G:0.65, T:0.00
Consensus pattern (17 bp):
GGCGGGGCGCCAGCAGG
Found at i:3939 original size:11 final size:11
Alignment explanation
Indices: 3923--3957 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
3913 CACGCGGGAC
3923 AGCAGCGCCGG
1 AGCAGCGCCGG
3934 AGCAGCGCCGG
1 AGCAGCGCCGG
* *
3945 AGGACCGCCGG
1 AGCAGCGCCGG
3956 AG
1 AG
3958 AACCGGACCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.20, C:0.34, G:0.46, T:0.00
Consensus pattern (11 bp):
AGCAGCGCCGG
Found at i:4583 original size:12 final size:12
Alignment explanation
Indices: 4568--4598 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
4558 CCGAGGGGCG
4568 CGGCAGCGGGAC
1 CGGCAGCGGGAC
*
4580 CGGCAGCGGGAG
1 CGGCAGCGGGAC
4592 CGGCAGC
1 CGGCAGC
4599 AGCACGCGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.16, C:0.32, G:0.52, T:0.00
Consensus pattern (12 bp):
CGGCAGCGGGAC
Found at i:4718 original size:26 final size:26
Alignment explanation
Indices: 4689--4741 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
4679 GGGGACGGAG
*
4689 GCAGACGGAGGGCAGGCCCGAGCGAA
1 GCAGACGGAGCGCAGGCCCGAGCGAA
*
4715 GCAGACGGAGCGCAGGCCCGGGCGAA
1 GCAGACGGAGCGCAGGCCCGAGCGAA
4741 G
1 G
4742 AGCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.28, G:0.47, T:0.00
Consensus pattern (26 bp):
GCAGACGGAGCGCAGGCCCGAGCGAA
Found at i:4782 original size:170 final size:167
Alignment explanation
Indices: 4448--5051 Score: 869
Period size: 169 Copynumber: 3.6 Consensus size: 167
4438 AGCACCCGAG
* *
4448 CGAGCCCCGGCGGGCGCAGCCGGCCGCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
1 CGAGCCCCGGCGGGCGCAGCAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
* *
4513 GACGGAGGCAGACGGAGCGCAGGCCAGGGCGAAGCCCCAGGCGGACCGAGG-GGCGCG-GCAGCG
66 GACGGAGGCAGACGGAGGGCAGGCCAGGGCGAAG--CCAGACGGACCGAGGCGG-GCGAG-AGC-
4576 GGACCGGCAGCGGGAGCGGCAGCAGCACGCGGGGGACCGGGC
126 GGACCGGCAGCGGGAGCGGCAGCAGCACGCGGGGGACCGGGC
* * * *
4618 CGAGCCCCGGCGGGCGCGGCAGGCCCCGCCGGGCGACGGAGCGCCCGCACGCGCGGGGC-GGGGG
1 CGAGCCCCGGCGGGCGCAGCAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
* * *
4682 GACGGAGGCAGACGGAGGGCAGGCCCGAGCGAAG-CAGACGGAGCGCAGGCCCGGGCGAAGAGCG
66 GACGGAGGCAGACGGAGGGCAGGCCAGGGCGAAGCCAGACGGACCG-AGG--CGGGCG-AGAGCG
* *
4746 GACCGGCAGCGGGAGCGACAGCAGCACGCGGGGGGACCGGGG
127 GACCGGCAGCGGGAGCGGCAGCAGCACGC-GGGGGACCGGGC
* * *
4788 CGGGCGCCGGCGGGCGCAGGAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
1 CGAGCCCCGGCGGGCGCAGCAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
* * *
4853 GACGGAGGCACACGGAGGGCAGGCCAGGGCGAAGCCCCAGCCGGACCGAGG-GGGCGACAGCGGG
66 GACGGAGGCAGACGGAGGGCAGGCCAGGGCGAAG--CCAGACGGACCGAGGCGGGCGAGAGC-GG
4917 ACCGGCAGCGGGAGCGGCAGCAGCACGCGGGGGACCGGGC
128 ACCGGCAGCGGGAGCGGCAGCAGCACGCGGGGGACCGGGC
4957 CGAGCCCCGGCGGGCGCAGCAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
1 CGAGCCCCGGCGGGCGCAGCAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
*
5022 GACGGAGGCAGACGCAGGGCAGGCC-GGGCG
66 GACGGAGGCAGACGGAGGGCAGGCCAGGGCG
5052 CGACCGACCG
Statistics
Matches: 389, Mismatches: 33, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
166 9 0.02
167 3 0.01
168 5 0.01
169 168 0.43
170 155 0.40
171 37 0.10
173 3 0.01
174 9 0.02
ACGTcount: A:0.15, C:0.35, G:0.51, T:0.00
Consensus pattern (167 bp):
CGAGCCCCGGCGGGCGCAGCAGGCCCCGCCGGCCGGCGGAGCGCCCGCACGCGCGGGCCGGGGGG
GACGGAGGCAGACGGAGGGCAGGCCAGGGCGAAGCCAGACGGACCGAGGCGGGCGAGAGCGGACC
GGCAGCGGGAGCGGCAGCAGCACGCGGGGGACCGGGC
Found at i:8236 original size:25 final size:27
Alignment explanation
Indices: 8208--8261 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
8198 CCGAGCGGCG
*
8208 GACC-GGCGC-GCGCCGGGCCACAGCC
1 GACCGGGCGCAGCGCCGGCCCACAGCC
*
8233 GACCGGGGCGCAGCGCCGGCCCCCAGCC
1 GACC-GGGCGCAGCGCCGGCCCACAGCC
8261 G
1 G
8262 CGGCCCGCCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 4 0.17
27 5 0.21
28 15 0.62
ACGTcount: A:0.11, C:0.48, G:0.41, T:0.00
Consensus pattern (27 bp):
GACCGGGCGCAGCGCCGGCCCACAGCC
Found at i:9173 original size:17 final size:16
Alignment explanation
Indices: 9147--9213 Score: 64
Period size: 17 Copynumber: 4.0 Consensus size: 16
9137 GGCGCGCCGC
9147 GCGCGCCGGGGGCGGG
1 GCGCGCCGGGGGCGGG
* *
9163 GCGGGGCCGGGGCGCGAG
1 GC-GCGCCGGGG-GCGGG
9181 GCGCGCCGGGGGGCGGG
1 GCGCGCC-GGGGGCGGG
*
9198 G-GCGGCGGAGGGCGGG
1 GCGCGCCGG-GGGCGGG
9214 ACGACGCCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
15 2 0.05
16 13 0.31
17 17 0.40
18 10 0.24
ACGTcount: A:0.03, C:0.27, G:0.70, T:0.00
Consensus pattern (16 bp):
GCGCGCCGGGGGCGGG
Found at i:11019 original size:20 final size:22
Alignment explanation
Indices: 10980--11019 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
10970 GGGGGGGGGC
10980 ACGGAGGAGCGCGAGAAGGACG
1 ACGGAGGAGCGCGAGAAGGACG
*
11002 ACGG-GGAGC-CGAGGAGGA
1 ACGGAGGAGCGCGAGAAGGA
11020 GAGACCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 5 0.29
22 4 0.24
ACGTcount: A:0.30, C:0.17, G:0.53, T:0.00
Consensus pattern (22 bp):
ACGGAGGAGCGCGAGAAGGACG
Found at i:12626 original size:46 final size:47
Alignment explanation
Indices: 12544--12704 Score: 165
Period size: 46 Copynumber: 3.4 Consensus size: 47
12534 CGGAGGGGCA
* * * **
12544 AGCGGCGGCGGAGGGGGGGCG-AGGCAAGAG-CCCGCACCAGGG-CC
1 AGCGGGGGCCGAGGGGGCGCGAAGGCAACCGCCCCGCACCAGGGCCC
*
12588 AGCGGGGGCC-AGGGGGCGCGAAAGGCAACC-CGGCCGCACCAGGGCCC
1 AGCGGGGGCCGAGGGGGCGCG-AAGGCAACCGC-CCCGCACCAGGGCCC
12635 AGC-GGGGCCGAGGGGG-GCGAAGGCAACCGCCCCGCACCCAGGGCCCC
1 AGCGGGGGCCGAGGGGGCGCGAAGGCAACCGCCCCGCA-CCAGGG-CCC
12682 AGGCGGGGGCCGAGGGGGGCGCG
1 A-GCGGGGGCCGA-GGGGGCGCG
Statistics
Matches: 97, Mismatches: 7, Indels: 19
0.79 0.06 0.15
Matches are distributed among these distances:
43 9 0.09
44 8 0.08
45 20 0.21
46 27 0.28
47 15 0.15
48 2 0.02
49 8 0.08
50 5 0.05
51 3 0.03
ACGTcount: A:0.17, C:0.34, G:0.50, T:0.00
Consensus pattern (47 bp):
AGCGGGGGCCGAGGGGGCGCGAAGGCAACCGCCCCGCACCAGGGCCC
Done.