Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168469.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_69, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131203
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
File 1 of 3
Found at i:669 original size:28 final size:29
Alignment explanation
Indices: 638--695 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
628 ATATCAATAA
638 TTAAATA-ATAAAAATT-AAATATTTTAAT
1 TTAAATATATAAAAATTAAAAT-TTTTAAT
* *
666 TTAAATATTTAAAATTTAAAATTTTTAAT
1 TTAAATATATAAAAATTAAAATTTTTAAT
695 T
1 T
696 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 7 0.27
29 15 0.58
30 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
TTAAATATATAAAAATTAAAATTTTTAAT
Found at i:676 original size:13 final size:14
Alignment explanation
Indices: 652--695 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
642 ATAATAAAAA
652 TTAAATATTTTAAT
1 TTAAATATTTTAAT
*
666 TTAAATATTTAAAAT
1 TTAAATATTT-TAAT
681 TTAAA-ATTTTTAAT
1 TTAAATA-TTTTAAT
695 T
1 T
696 ATTAACATTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
14 15 0.58
15 11 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTAAATATTTTAAT
Found at i:700 original size:23 final size:24
Alignment explanation
Indices: 665--709 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
655 AATATTTTAA
*
665 TTTAAATATTTAAAATTTAAAATT
1 TTTAAATATTTAAAATTCAAAATT
* *
689 TTTAATTA-TTAACATTCAAAA
1 TTTAAATATTTAAAATTCAAAA
710 AATTAATAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 11 0.61
24 7 0.39
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
TTTAAATATTTAAAATTCAAAATT
Found at i:2222 original size:13 final size:13
Alignment explanation
Indices: 2204--2229 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2194 AGGATTTGTT
2204 ATAAAATTATTAG
1 ATAAAATTATTAG
2217 ATAAAATTATTAG
1 ATAAAATTATTAG
2230 TATTTTACTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (13 bp):
ATAAAATTATTAG
Found at i:2621 original size:6 final size:6
Alignment explanation
Indices: 2605--2693 Score: 51
Period size: 6 Copynumber: 14.3 Consensus size: 6
2595 AAATTAGTTA
* *
2605 AATTAAT AATTAT AATTAT AATTA- ATTTA- AACTAAT AATTA- AATTTATT
1 AATT-AT AATTAT AATTAT AATTAT AATTAT AA-TTAT AATTAT AA-TTA-T
* *
2654 AATTAT -ATAATT AATTAT AATTAT ATAATATT AATTAT AA
1 AATTAT AATTA-T AATTAT AATTAT A-ATTA-T AATTAT AA
2694 CGATAATTAC
Statistics
Matches: 65, Mismatches: 8, Indels: 19
0.71 0.09 0.21
Matches are distributed among these distances:
5 10 0.15
6 33 0.51
7 18 0.28
8 4 0.06
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (6 bp):
AATTAT
Found at i:2634 original size:29 final size:27
Alignment explanation
Indices: 2596--2678 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 27
2586 AACAATTTAA
*
2596 AATTAGTTAAATTAATAATTATAATTAT
1 AATTAATTAAA-TAATAATTATAATTAT
2624 AATTAATTTAAACTAATAATTA-AATT-T
1 AATTAA-TTAAA-TAATAATTATAATTAT
*
2651 -ATTAATTATATAATTAATTATAATTAT
1 AATTAATTAAATAA-TAATTATAATTAT
2678 A
1 A
2679 TAATATTAAT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
24 3 0.06
25 10 0.21
26 9 0.19
27 2 0.04
28 9 0.19
29 14 0.30
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (27 bp):
AATTAATTAAATAATAATTATAATTAT
Found at i:3319 original size:17 final size:15
Alignment explanation
Indices: 3297--3339 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
3287 TTTATGAATT
3297 TAATAATTAATTAAGTA
1 TAATAATT-ATT-AGTA
3314 TAATAATTATTAGTA
1 TAATAATTATTAGTA
*
3329 TTATAA-TATTA
1 TAATAATTATTA
3340 TTAAACAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 5 0.20
15 9 0.36
16 3 0.12
17 8 0.32
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (15 bp):
TAATAATTATTAGTA
Found at i:3452 original size:12 final size:11
Alignment explanation
Indices: 3435--3480 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
3425 AATGTAAATC
3435 ATATTATTGTTA
1 ATATTATT-TTA
3447 ATATTATTATTA
1 ATATTATT-TTA
*
3459 AT-TTAATTTA
1 ATATTATTTTA
3469 A-ATTATTTTA
1 ATATTATTTTA
3479 AT
1 AT
3481 TAATATTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
10 12 0.41
11 4 0.14
12 13 0.45
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (11 bp):
ATATTATTTTA
Found at i:3488 original size:15 final size:15
Alignment explanation
Indices: 3435--3508 Score: 55
Period size: 15 Copynumber: 4.8 Consensus size: 15
3425 AATGTAAATC
3435 ATATTATTGTTAATATTA
1 ATATTATT-TT-A-ATTA
* *
3453 TTATTAATTTAATTTA
1 ATATTATTTTAA-TTA
3469 A-ATTATTTTAATTA
1 ATATTATTTTAATTA
*
3483 ATATTA--TAAATTA
1 ATATTATTTTAATTA
3496 ATATTATATTTAA
1 ATATTAT-TTTAA
3509 AATTTGAATG
Statistics
Matches: 45, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
13 12 0.27
14 4 0.09
15 14 0.31
16 7 0.16
17 2 0.04
18 6 0.13
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (15 bp):
ATATTATTTTAATTA
Found at i:3496 original size:13 final size:13
Alignment explanation
Indices: 3478--3503 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3468 AAATTATTTT
3478 AATTAATATTATA
1 AATTAATATTATA
3491 AATTAATATTATA
1 AATTAATATTATA
3504 TTTAAAATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AATTAATATTATA
Found at i:4034 original size:16 final size:17
Alignment explanation
Indices: 4003--4035 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3993 ATATTAAAAC
4003 AAATAATGATTTGAAAT
1 AAATAATGATTTGAAAT
*
4020 AAATAATTA-TTGAAAT
1 AAATAATGATTTGAAAT
4036 TTTAAAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (17 bp):
AAATAATGATTTGAAAT
Found at i:5850 original size:21 final size:21
Alignment explanation
Indices: 5809--5850 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
5799 AATTATTATC
*
5809 TTTAATTAAAATATAATAAAT
1 TTTAATTAAAATATAAAAAAT
*
5830 TTTAATTTATAAT-TAAAAAAT
1 TTTAA-TTAAAATATAAAAAAT
5851 AAATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTAATTAAAATATAAAAAAT
Found at i:6708 original size:16 final size:17
Alignment explanation
Indices: 6686--6732 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
6676 GAGTACTTCA
6686 AATATT-ATATATTAATT
1 AATATTAATA-ATTAATT
6703 -ATATTAATAATTAATT
1 AATATTAATAATTAATT
*
6719 AATATTAATTATTA
1 AATATTAATAATTA
6733 TAAATATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 12 0.44
17 15 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATATTAATAATTAATT
Found at i:6750 original size:29 final size:27
Alignment explanation
Indices: 6685--6750 Score: 73
Period size: 26 Copynumber: 2.4 Consensus size: 27
6675 AGAGTACTTC
*
6685 AAATATTAT-ATATTAATTATATTAAT
1 AAATATTATAATATTAATTATATAAAT
* *
6711 AATTAAT-TAATATTAATTATTATAAAT
1 AAATATTATAATATTAATTA-TATAAAT
6738 ATAATATTATAAT
1 A-AATATTATAAT
6751 GTTAGTTACT
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 1 0.03
26 15 0.48
27 7 0.23
28 4 0.13
29 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (27 bp):
AAATATTATAATATTAATTATATAAAT
Found at i:6871 original size:20 final size:21
Alignment explanation
Indices: 6848--6898 Score: 54
Period size: 20 Copynumber: 2.5 Consensus size: 21
6838 CAAATATTTC
6848 AATAATTATTAAAT-TA-TTA
1 AATAATTATTAAATATAGTTA
* *
6867 TAATAAATAAT-AATATAGTTA
1 -AATAATTATTAAATATAGTTA
6888 AATAATTATTA
1 AATAATTATTA
6899 TTAATGATAA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
19 3 0.12
20 18 0.75
21 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
AATAATTATTAAATATAGTTA
Found at i:8000 original size:38 final size:37
Alignment explanation
Indices: 7952--8052 Score: 106
Period size: 35 Copynumber: 2.8 Consensus size: 37
7942 TTTATTATTT
* *
7952 TATTATTAATAATTATATTAAT-TTAATTCATATATTAA
1 TATTAATAATAATTATA-TAATATTAATT-AGATATTAA
7990 TATTAATAAT-ATTA-ATAATAGTTAATTAGATATTAA
1 TATTAATAATAATTATATAATA-TTAATTAGATATTAA
*
8026 T-TTAATAATAA-TATATAA-AATAATTAG
1 TATTAATAATAATTATATAATATTAATTAG
8053 TTTATAACAT
Statistics
Matches: 56, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
34 7 0.12
35 15 0.27
36 15 0.27
37 10 0.18
38 9 0.16
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.47
Consensus pattern (37 bp):
TATTAATAATAATTATATAATATTAATTAGATATTAA
Found at i:8001 original size:9 final size:9
Alignment explanation
Indices: 7987--8039 Score: 54
Period size: 9 Copynumber: 5.7 Consensus size: 9
7977 ATTCATATAT
7987 TAATATTAA
1 TAATATTAA
7996 TAATATTAA
1 TAATATTAA
8005 TAATAGTTAA
1 TAATA-TTAA
8015 TTAGATATTAA
1 -TA-ATATTAA
* *
8026 T-TTAATAA
1 TAATATTAA
8034 TAATAT
1 TAATAT
8040 ATAAAATAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
8 6 0.17
9 16 0.44
10 5 0.14
11 6 0.17
12 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (9 bp):
TAATATTAA
Found at i:8051 original size:27 final size:27
Alignment explanation
Indices: 8021--8088 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
8011 TTAATTAGAT
8021 ATTAATTTAATAATAAT-ATATAAAATA
1 ATTAATTT-ATAATAATAATATAAAATA
* * * *
8048 ATTAGTTTATAACATTAATATAATATA
1 ATTAATTTATAATAATAATATAAAATA
8075 ATTAATTTTATAAT
1 ATTAA-TTTATAAT
8089 TAATTAACTA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
26 6 0.18
27 20 0.61
28 7 0.21
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (27 bp):
ATTAATTTATAATAATAATATAAAATA
Found at i:8151 original size:21 final size:21
Alignment explanation
Indices: 8109--8151 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
8099 TTAATTATAT
*
8109 TAAATTTATATATATAATTTA
1 TAAATTTATATATATAAGTTA
*
8130 TAAATTTAT-TAGTATTAGTTA
1 TAAATTTATATA-TATAAGTTA
8151 T
1 T
8152 TATATAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (21 bp):
TAAATTTATATATATAAGTTA
Found at i:8528 original size:17 final size:17
Alignment explanation
Indices: 8508--8570 Score: 55
Period size: 17 Copynumber: 3.9 Consensus size: 17
8498 TTTGTAGTAA
8508 TTATAATTATTAATTAC
1 TTATAATTATTAATTAC
*
8525 TTATAA-T-TT-ATTGC
1 TTATAATTATTAATTAC
*
8539 TTATAATTA-TAATATAA
1 TTATAATTATTAAT-TAC
*
8556 TTAT-ATTAATAATTA
1 TTATAATTATTAATTA
8571 ATTTTTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
14 10 0.26
15 4 0.11
16 9 0.24
17 15 0.39
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (17 bp):
TTATAATTATTAATTAC
Found at i:8863 original size:22 final size:20
Alignment explanation
Indices: 8837--8879 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
8827 ATTTAACTTC
*
8837 ATTAATTCAATGATATATTATA
1 ATTAATT-AAT-ATAAATTATA
8859 ATTAATTAATATAAATTATA
1 ATTAATTAATATAAATTATA
8879 A
1 A
8880 CAATTGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 3 0.15
22 7 0.35
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTAATTAATATAAATTATA
Found at i:9395 original size:36 final size:36
Alignment explanation
Indices: 9346--9424 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
9336 TTAATTTATG
*
9346 TTAAATTAATAAATAATAT-ATTATTAATTT-ATAGTA
1 TTAATTTAATAAATAATATAATTATT-ATTTAATAG-A
* *
9382 TTAATTTAATAAATTATTTAATTATTATTTAATAGA
1 TTAATTTAATAAATAATATAATTATTATTTAATAGA
9418 TT-ATTTA
1 TTAATTTA
9425 TTATTATTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 5 0.13
36 23 0.61
37 10 0.26
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.52
Consensus pattern (36 bp):
TTAATTTAATAAATAATATAATTATTATTTAATAGA
Found at i:9402 original size:12 final size:12
Alignment explanation
Indices: 9385--9424 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
9375 TATAGTATTA
9385 ATTTAATAAATT
1 ATTTAATAAATT
*
9397 ATTTAAT-TATT
1 ATTTAATAAATT
*
9408 ATTTAATAGATT
1 ATTTAATAAATT
9420 ATTTA
1 ATTTA
9425 TTATTATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (12 bp):
ATTTAATAAATT
Found at i:9415 original size:23 final size:22
Alignment explanation
Indices: 9380--9432 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 22
9370 TAATTTATAG
9380 TATTAATTTAATAAATTATTTAAT
1 TATT-ATTTAATAAATTATTT-AT
*
9404 TATTATTTAATAGATTATTTAT
1 TATTATTTAATAAATTATTTAT
9426 TATTATT
1 TATTATT
9433 ATTCATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
22 9 0.32
23 15 0.54
24 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (22 bp):
TATTATTTAATAAATTATTTAT
Found at i:9435 original size:13 final size:12
Alignment explanation
Indices: 9362--9435 Score: 55
Period size: 13 Copynumber: 6.0 Consensus size: 12
9352 TAATAAATAA
9362 TATATTATTAATT
1 TATATTATT-ATT
*
9375 TATAGTATTAATT
1 TATATTATT-ATT
*
9388 TA-ATAAATTATT
1 TATAT-TATTATT
9400 TA-ATTATTATT
1 TATATTATTATT
*
9411 TA-ATAGATTATT
1 TATAT-TATTATT
9423 TATTATTATTATT
1 TA-TATTATTATT
9436 CATAAAACTA
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
11 10 0.20
12 16 0.31
13 23 0.45
14 2 0.04
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (12 bp):
TATATTATTATT
Found at i:10091 original size:31 final size:32
Alignment explanation
Indices: 10053--10145 Score: 93
Period size: 35 Copynumber: 2.8 Consensus size: 32
10043 TAATTGATAA
*
10053 TATATTAAT-TTAATTAATTTAATTAAATGTT
1 TATATTAATATTAATTAATTTAATTAAATATT
*
10084 TATATTAATATTAAATATTAATATAAATT-AATATT
1 TATATTAATATT--A-ATTAAT-TTAATTAAATATT
*
10119 AATATTAATATT-ATTAATTTAAATTAA
1 TATATTAATATTAATTAATTT-AATTAA
10146 TTTATAATAA
Statistics
Matches: 51, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
30 1 0.02
31 19 0.37
32 3 0.06
34 1 0.02
35 22 0.43
36 5 0.10
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (32 bp):
TATATTAATATTAATTAATTTAATTAAATATT
Found at i:10096 original size:6 final size:6
Alignment explanation
Indices: 10085--10131 Score: 71
Period size: 6 Copynumber: 8.0 Consensus size: 6
10075 TTAAATGTTT
10085 ATATTA ATATTAA ATATTA ATA-TA A-ATTA ATATTA ATATTA ATATTA
1 ATATTA ATATT-A ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
10132 TTAATTTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
4 1 0.03
5 6 0.16
6 25 0.66
7 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (6 bp):
ATATTA
Found at i:10115 original size:10 final size:10
Alignment explanation
Indices: 10100--10146 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
10090 AATATTAAAT
10100 ATTAATATAA
1 ATTAATATAA
10110 ATTAATATTAA
1 ATTAATA-TAA
*
10121 TATTAATAT-T
1 -ATTAATATAA
*
10131 ATTAATTTAA
1 ATTAATATAA
10141 ATTAAT
1 ATTAAT
10147 TTATAATAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
9 7 0.23
10 13 0.42
11 4 0.13
12 7 0.23
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (10 bp):
ATTAATATAA
Found at i:10146 original size:31 final size:29
Alignment explanation
Indices: 10085--10146 Score: 97
Period size: 31 Copynumber: 2.1 Consensus size: 29
10075 TTAAATGTTT
10085 ATATTAATATTAAATATTAATATAAATTA
1 ATATTAATATTAAATATTAATATAAATTA
*
10114 ATATTAATATTAATATTATTAATTTAAATTA
1 ATATTAATATTAA-A-TATTAATATAAATTA
10145 AT
1 AT
10147 TTATAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 13 0.43
30 1 0.03
31 16 0.53
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (29 bp):
ATATTAATATTAAATATTAATATAAATTA
Found at i:10506 original size:13 final size:13
Alignment explanation
Indices: 10488--10525 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
10478 CACGATTACA
10488 ATAATTTATAAAT
1 ATAATTTATAAAT
10501 ATAA-TTATTAAAT
1 ATAATTTA-TAAAT
10514 ATAGATTTATAA
1 ATA-ATTTATAA
10526 CAATTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 3 0.14
13 12 0.55
14 4 0.18
15 3 0.14
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (13 bp):
ATAATTTATAAAT
Found at i:10998 original size:6 final size:6
Alignment explanation
Indices: 10985--11023 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
10975 TTTTATGGGC
* *
10985 TTTA-T TTTATT TTTATT TTTATT TTTCTT TTCATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTA
11024 GATAATAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTATT
Found at i:11635 original size:20 final size:20
Alignment explanation
Indices: 11598--11635 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11588 TTATAATATA
*
11598 ATTGATTATATATTTTAACT
1 ATTGATTATATATATTAACT
11618 ATTGATTA-ATATAATTAA
1 ATTGATTATATAT-ATTAA
11636 TTCTTATCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.03, G:0.05, T:0.50
Consensus pattern (20 bp):
ATTGATTATATATATTAACT
Found at i:11936 original size:22 final size:22
Alignment explanation
Indices: 11886--11969 Score: 77
Period size: 22 Copynumber: 3.9 Consensus size: 22
11876 CTTTATCATA
11886 ATAAATAATTT-ATTAAT-TAT
1 ATAAATAATTTAATTAATATAT
*
11906 ATAATTATATTTAATTAATATAT
1 ATAAATA-ATTTAATTAATATAT
* * *
11929 A-AAATATAATAAATTAATAATTT
1 ATAAATA-ATTTAATTAAT-ATAT
11952 ATAAATAATTTAA-TAATA
1 ATAAATAATTTAATTAATA
11970 ATTAGTAACT
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
20 6 0.12
21 5 0.10
22 24 0.46
23 12 0.23
24 5 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAAATAATTTAATTAATATAT
Found at i:12453 original size:13 final size:14
Alignment explanation
Indices: 12435--12467 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
12425 ATTTATTTAT
12435 AATTATA-TAGATA
1 AATTATATTAGATA
12448 AATTATATTAGATA
1 AATTATATTAGATA
12462 ATATTA
1 A-ATTA
12468 ATAATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 7 0.39
15 4 0.22
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTATATTAGATA
Found at i:12703 original size:26 final size:26
Alignment explanation
Indices: 12669--12827 Score: 93
Period size: 26 Copynumber: 6.1 Consensus size: 26
12659 ATAATATTTA
*
12669 AATATTATAATTAAATATTAATTAAT
1 AATATTATAATTAAATATTAATTATT
* *
12695 AATAGTAT-ATTAATTATATAATT-TT
1 AATATTATAATTAAATAT-TAATTATT
* *
12720 AA-ATTATAATTACAATACGTAAATATT
1 AATATTATAATTA-AATA-TTAATTATT
* *
12747 AATAATATAATT-AATA-TGA-T-TT
1 AATATTATAATTAAATATTAATTATT
*
12769 -ATACTATAATATAAATATTAATTATGTT
1 AATATTATAAT-TAAATATTAATTA--TT
*
12797 AAATATTTATAATT-AATAATTAATTGTT
1 -AATA-TTATAATTAAAT-ATTAATTATT
12825 AAT
1 AAT
12828 TAGGATATAT
Statistics
Matches: 103, Mismatches: 13, Indels: 33
0.69 0.09 0.22
Matches are distributed among these distances:
21 9 0.09
22 3 0.03
23 5 0.05
24 8 0.08
25 16 0.16
26 23 0.22
27 7 0.07
28 12 0.12
29 3 0.03
30 11 0.11
31 6 0.06
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.46
Consensus pattern (26 bp):
AATATTATAATTAAATATTAATTATT
Found at i:13099 original size:12 final size:12
Alignment explanation
Indices: 13082--13113 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
13072 TATTTAAGTT
13082 ATAATTATTAAA
1 ATAATTATTAAA
*
13094 ATAATTAATAAA
1 ATAATTATTAAA
13106 ATAATTAT
1 ATAATTAT
13114 AATTTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATTATTAAA
Found at i:13117 original size:18 final size:20
Alignment explanation
Indices: 13094--13138 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 20
13084 AATTATTAAA
13094 ATAATTA-ATAA-AATAATT
1 ATAATTATATAACAATAATT
13112 ATAATTTATATAACTAATAATT
1 ATAA-TTATATAAC-AATAATT
13134 ATAAT
1 ATAAT
13139 ATGATTATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 3 0.13
20 4 0.17
21 1 0.04
22 11 0.48
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (20 bp):
ATAATTATATAACAATAATT
Found at i:14818 original size:20 final size:20
Alignment explanation
Indices: 14771--14809 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14761 AATAAATATG
14771 ATTAATATTATTATATAAAA
1 ATTAATATTATTATATAAAA
*
14791 ATAAATATTATTAGTATAA
1 ATTAATATTATTA-TATAA
14810 CTTTAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (20 bp):
ATTAATATTATTATATAAAA
Found at i:14882 original size:21 final size:22
Alignment explanation
Indices: 14858--14904 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
14848 ATTAACAATT
14858 ATTAGTAAAAATT-ATATTTA-A
1 ATTAGT-AAAATTAATATTTATA
*
14879 ATTAGTAAATTTAATATTTATA
1 ATTAGTAAAATTAATATTTATA
14901 ATTA
1 ATTA
14905 ATTATTTAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 5 0.22
21 13 0.57
22 5 0.22
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTAGTAAAATTAATATTTATA
Found at i:15582 original size:17 final size:17
Alignment explanation
Indices: 15560--15652 Score: 56
Period size: 17 Copynumber: 5.7 Consensus size: 17
15550 TGTTTAATAA
15560 AATTAATATTATTATAT
1 AATTAATATTATTATAT
*
15577 AATTAA-ATTAATAATAT
1 AATTAATATT-ATTATAT
*
15594 AATT-ATA-TAATAT-T
1 AATTAATATTATTATAT
* *
15608 TATT-ATATTATAATAAAT
1 AATTAATATTAT--TATAT
* *
15626 ATTTAAT-TTAATATAT
1 AATTAATATTATTATAT
15642 AA-TAATATTAT
1 AATTAATATTAT
15653 ATAATTAAAC
Statistics
Matches: 56, Mismatches: 12, Indels: 17
0.66 0.14 0.20
Matches are distributed among these distances:
14 7 0.12
15 9 0.16
16 13 0.23
17 19 0.34
18 6 0.11
19 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATTAATATTATTATAT
Found at i:15728 original size:17 final size:18
Alignment explanation
Indices: 15701--15734 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
15691 TTACTTATTA
15701 ATTATTATAATTTAACTT
1 ATTATTATAATTTAACTT
15719 ATTA-TATAATTTAACT
1 ATTATTATAATTTAACT
15735 ACTATATTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATTATAATTTAACTT
Found at i:15748 original size:18 final size:17
Alignment explanation
Indices: 15701--15749 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
15691 TTACTTATTA
15701 ATTATTATAATTTAACTT
1 ATTATT-TAATTTAACTT
*
15719 ATTATATAATTTAAC-T
1 ATTATTTAATTTAACTT
15735 ACTATATTTAATTTA
1 A-T-TATTTAATTTA
15750 TTAACTATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 2 0.07
17 10 0.37
18 15 0.56
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTATTTAATTTAACTT
Found at i:15975 original size:9 final size:9
Alignment explanation
Indices: 15956--15994 Score: 51
Period size: 9 Copynumber: 4.0 Consensus size: 9
15946 AAATAATAAT
15956 TTATAAATTA
1 TTAT-AATTA
15966 TTATAATTA
1 TTATAATTA
15975 TTATAATATA
1 TTATAAT-TA
15985 TTATTAATTA
1 TTA-TAATTA
15995 CATATATAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 12 0.44
10 11 0.41
11 4 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TTATAATTA
Found at i:16008 original size:18 final size:18
Alignment explanation
Indices: 15987--16039 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 18
15977 ATAATATATT
15987 ATTAATTACATATAT-AAA
1 ATTAATTA-ATATATCAAA
*
16005 ATTAAATTAATATATCAAT
1 ATT-AATTAATATATCAAA
*
16024 ATTAATTTATA-ATCAA
1 ATTAATTAATATATCAA
16040 CTATAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 5 0.16
18 16 0.52
19 10 0.32
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTAATTAATATATCAAA
Found at i:16027 original size:19 final size:19
Alignment explanation
Indices: 15980--16028 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
15970 AATTATTATA
*
15980 ATATATTATT-AATTACAT
1 ATATAATATTAAATTACAT
*
15998 ATATAAAATTAAATTA-AT
1 ATATAATATTAAATTACAT
16016 ATATCAATATTAA
1 ATAT-AATATTAA
16029 TTTATAATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 14 0.54
19 12 0.46
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (19 bp):
ATATAATATTAAATTACAT
Found at i:17017 original size:13 final size:13
Alignment explanation
Indices: 16999--17023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
16989 AGTAAAATAT
16999 TAATAATTTTATC
1 TAATAATTTTATC
17012 TAATAATTTTAT
1 TAATAATTTTAT
17024 AATAAATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATAATTTTATC
Found at i:17437 original size:15 final size:16
Alignment explanation
Indices: 17401--17444 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
17391 TTAAATTGTT
17401 AATATTAATAATAGAA
1 AATATTAATAATAGAA
17417 ATATATTAA-AAT-GTAA
1 A-ATATTAATAATAG-AA
17433 AATATTAATAAT
1 AATATTAATAAT
17445 TAAGATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 8 0.32
16 10 0.40
17 7 0.28
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (16 bp):
AATATTAATAATAGAA
Found at i:17594 original size:26 final size:26
Alignment explanation
Indices: 17565--17616 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
17555 ATGATTAATC
17565 TAATCATAAATATTAATAATAATATT
1 TAATCATAAATATTAATAATAATATT
* * * *
17591 TAATTATTATTATTTATAATAATATT
1 TAATCATAAATATTAATAATAATATT
17617 AGGAATAAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (26 bp):
TAATCATAAATATTAATAATAATATT
Found at i:17787 original size:46 final size:48
Alignment explanation
Indices: 17737--17828 Score: 109
Period size: 47 Copynumber: 2.0 Consensus size: 48
17727 CAATAATCAA
* * *
17737 AAAAAT-TAATCTTTATTAACTAATAAT-AATTTTTATT-TATATTAAT
1 AAAAATATAATATTCATTAA-TAATAATAAATTATTATTATATATTAAT
* *
17783 AAAAATATTATATTCATTAATTATAATAAATTATTATTATATATTA
1 AAAAATATAATATTCATTAATAATAATAAATTATTATTATATATTA
17829 TATACTTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
46 12 0.32
47 19 0.50
48 7 0.18
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (48 bp):
AAAAATATAATATTCATTAATAATAATAAATTATTATTATATATTAAT
Found at i:17810 original size:21 final size:20
Alignment explanation
Indices: 17776--17831 Score: 50
Period size: 21 Copynumber: 3.0 Consensus size: 20
17766 TTTTTATTTA
* *
17776 TATTAATAAAAATATTATAT
1 TATTAATTATAATATTATAT
17796 TCATTAATTATAATA--A-AT
1 T-ATTAATTATAATATTATAT
17814 TATT-ATTAT-ATATTATAT
1 TATTAATTATAATATTATAT
17832 ACTTAATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
15 3 0.10
16 5 0.17
17 4 0.13
18 5 0.17
19 1 0.03
20 1 0.03
21 11 0.37
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTAATTATAATATTATAT
Found at i:17929 original size:12 final size:12
Alignment explanation
Indices: 17874--17961 Score: 54
Period size: 12 Copynumber: 6.9 Consensus size: 12
17864 TAATAAGGTA
17874 AATATTTATAATT
1 AATATTT-TAATT
*
17887 AATATTTAAATT
1 AATATTTTAATT
* *
17899 ATAAATATTAA-T
1 A-ATATTTTAATT
*
17911 AATTATTTTAATG
1 AA-TATTTTAATT
17924 AATATTTTAA-T
1 AATATTTTAATT
17935 AATCAATTTATTAATT
1 AAT--A-TT-TTAATT
*
17951 ATTATTTTAAT
1 AATATTTTAAT
17962 AAATTAATAA
Statistics
Matches: 58, Mismatches: 9, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
11 4 0.07
12 26 0.45
13 18 0.31
14 3 0.05
15 4 0.07
16 3 0.05
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (12 bp):
AATATTTTAATT
Found at i:17955 original size:39 final size:35
Alignment explanation
Indices: 17904--17992 Score: 108
Period size: 39 Copynumber: 2.4 Consensus size: 35
17894 AAATTATAAA
*
17904 TATTAATAATTATTTTAATGAATATTTTAATAATCAAT-T
1 TATTAATTATTATTTTAAT-AA-A--TTAATAAT-AATAT
17943 TATTAATTATTATTTTAATAAATTAATAATAATAT
1 TATTAATTATTATTTTAATAAATTAATAATAATAT
17978 TATTATATTATTATT
1 TATTA-ATTATTATT
17993 ACTAATAACA
Statistics
Matches: 47, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
34 3 0.06
35 14 0.30
36 9 0.19
37 1 0.02
38 2 0.04
39 18 0.38
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (35 bp):
TATTAATTATTATTTTAATAAATTAATAATAATAT
Found at i:18177 original size:22 final size:22
Alignment explanation
Indices: 18135--18177 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
18125 CTTTTAGTTA
*
18135 TATTCAAATAATACTACAATAT
1 TATTCAAATAATACAACAATAT
*
18157 TATT-AAATTAATACAATAATA
1 TATTCAAA-TAATACAACAATA
18178 ATTGTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.17
22 15 0.83
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.37
Consensus pattern (22 bp):
TATTCAAATAATACAACAATAT
Found at i:18677 original size:21 final size:20
Alignment explanation
Indices: 18631--18669 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
18621 ATCTCAATTT
*
18631 ATAATTATAATATAGTTACA
1 ATAATTATAATATAATTACA
18651 ACTAATTATAATATAATTA
1 A-TAATTATAATATAATTA
18670 TTAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (20 bp):
ATAATTATAATATAATTACA
Found at i:18701 original size:35 final size:33
Alignment explanation
Indices: 18653--18739 Score: 99
Period size: 35 Copynumber: 2.6 Consensus size: 33
18643 TAGTTACAAC
*
18653 TAATTATAATATAATTATTAATAATAACTATA-AA
1 TAATTATATTATAATTATTAAT-A-AACTATATAA
*
18687 TTAATTATATTATAATAATTAATAAACTATATAA
1 -TAATTATATTATAATTATTAATAAACTATATAA
*
18721 TAATT-TATTATTA-TATTAA
1 TAATTATATTATAATTATTAA
18740 AAAAATAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 5 0.11
32 7 0.15
33 12 0.26
34 3 0.06
35 20 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (33 bp):
TAATTATATTATAATTATTAATAAACTATATAA
Found at i:19302 original size:21 final size:21
Alignment explanation
Indices: 19263--19302 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
19253 ATATTGTTAA
*
19263 TTATAATTTATAATATAATAT
1 TTATAATATATAATATAATAT
19284 TTATAATATATTAAT-TAAT
1 TTATAATATA-TAATATAAT
19303 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATAATATATAATATAATAT
Found at i:19390 original size:33 final size:35
Alignment explanation
Indices: 19353--19418 Score: 100
Period size: 33 Copynumber: 1.9 Consensus size: 35
19343 TATTTATTGT
19353 TATTATTTATTATAACAA-TATAATATT-ATTTAA
1 TATTATTTATTATAACAATTATAATATTGATTTAA
* *
19386 TATTATTTATTATAATAATTATTATATTGATTT
1 TATTATTTATTATAACAATTATAATATTGATTT
19419 TATTTATATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 17 0.59
34 8 0.28
35 4 0.14
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (35 bp):
TATTATTTATTATAACAATTATAATATTGATTTAA
Found at i:20352 original size:181 final size:181
Alignment explanation
Indices: 20165--20537 Score: 400
Period size: 180 Copynumber: 2.1 Consensus size: 181
20155 CAAAAAAATA
* * * *
20165 AAAAAATAAATCTAATTGT-CGAACT-AGTTCAAATAGTTAAGACTCTA-TGAATGATTA-ACTA
1 AAAAAATAAAT-TAATT-TCCGAAATCAGTTCAAATAGTTAA-AAT-TATTAAATAATTATA-TA
* * * ** *
20226 TTTCAAATCGTTATGATCTTTTTCTTTTA-ACATAAAACAATTGTTT-TGTTTGTACAAGCTTGT
61 TTTCAAATCATTATGATC-TTTT-GTTTAGACATAAAACAATTGTTTCAGTTCATACAAGCTTAT
* * * * *
20289 TTGGATTAAAATAATACTAATTTAACAATATTTTGAAAATTAATATGTAAGAGA-TTT
124 TTAGAATAAAATAATACTAATTTAACAACATTTGGAAAATTAATATGAAAGAGATTTT
** * *
20346 AAAAAATAAATTTGTTTCCTAAATCAGTTCAAATTGTTAAAATTATTAAATAATTATATATTTCA
1 AAAAAATAAATTAATTTCCGAAATCAGTTCAAATAGTTAAAATTATTAAATAATTATATATTTCA
* * *
20411 TATCATTTTGATCTTTTGTTTAGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAAT
66 AATCATTATGATCTTTTGTTTAGACATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAAT
* ***
20476 AAACTAATACTAATTTGTTAACATTTGGAAAATTAATATGAAAGAGATTTT
131 AAAATAATACTAATTTAACAACATTTGGAAAATTAATATGAAAGAGATTTT
20527 AAAAAATAAAT
1 AAAAAATAAAT
20538 ATATTTACCA
Statistics
Matches: 159, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
178 4 0.03
179 23 0.14
180 92 0.58
181 40 0.25
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (181 bp):
AAAAAATAAATTAATTTCCGAAATCAGTTCAAATAGTTAAAATTATTAAATAATTATATATTTCA
AATCATTATGATCTTTTGTTTAGACATAAAACAATTGTTTCAGTTCATACAAGCTTATTTAGAAT
AAAATAATACTAATTTAACAACATTTGGAAAATTAATATGAAAGAGATTTT
Found at i:21020 original size:181 final size:177
Alignment explanation
Indices: 20823--21324 Score: 527
Period size: 181 Copynumber: 2.8 Consensus size: 177
20813 CTTTAAATTG
20823 TTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTGAAATAAAAT
1 TTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTT-AAATAAAAT
* *
20888 AAAACTAATCTAATAATATTCTGAAAATTAATAACTAAGAAATTTAAAAAATAAAATTGTTTGTC
65 AAAACTAATCTATTAATATT-T-AAAATTAATAA-TAAGAAATTTAAAAAATAAAATTGTTTATC
* * *
20953 AAATTAGTTTAAATAGTTAAAACTATATGAATAATTATCTATTTCAAATCA
127 AAATTAGTTCAAATAATTAAAACTATATGAACAATTATCTATTTCAAATCA
* *
21004 TTATAACCTTTTGTTTTGTCATAAAACAA-TATTTTCAATTCATACTAGCTTATTTAGAATAAAA
1 TTATAACCTTTTGTTTTGTCATAAAACAATTA-TTTCTATTCATACAAGCTTATTTA-AATAAAA
* * ** *
21068 TAAAA-TAAATTTATTAAAATTTCAAAAATTAATAAGTAAGATAA-TTAAAAAATAATTTTATTT
64 TAAAACT-AATCTATTAATATTT--AAAATTAATAA-TAAGA-AATTTAAAAAATAAAATTGTTT
* * * * ** * **
21131 ACCTAATCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATTG
124 ATCAAATTAGTTCAAATAATTAAAACTATATGAACAATTATCTATTTCAAATCA
* * * * * *
21185 TTATGACCTTTTGTTTTGTCATAAAACTAATGT-TTT-TGTTCATATAAGTTTGTTCAAAATAAA
1 TTATAACCTTTTGTTTTGTCATAAAAC-AAT-TATTTCTATTCATACAAGCTTATT-TAAATAAA
*
21248 ATAATACTAATCTATTAATATTTAAAA--AATTAATAA-AAATTTTAAAAAAT-AAATCTGTTTA
63 ATAAAACTAATCTATTAATATTTAAAATTAA-TAATAAGAAA-TTTAAAAAATAAAAT-TGTTTA
*
21309 TCAAACTAGTTCAAAT
125 TCAAATTAGTTCAAAT
21325 TAAGACTATT
Statistics
Matches: 265, Mismatches: 42, Indels: 32
0.78 0.12 0.09
Matches are distributed among these distances:
175 2 0.01
176 3 0.01
177 30 0.11
178 3 0.01
179 4 0.02
180 5 0.02
181 208 0.78
182 9 0.03
184 1 0.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (177 bp):
TTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTAAATAAAATA
AAACTAATCTATTAATATTTAAAATTAATAATAAGAAATTTAAAAAATAAAATTGTTTATCAAAT
TAGTTCAAATAATTAAAACTATATGAACAATTATCTATTTCAAATCA
Found at i:21259 original size:362 final size:355
Alignment explanation
Indices: 20623--21324 Score: 792
Period size: 362 Copynumber: 2.0 Consensus size: 355
20613 TGGCCATTTC
** * * ** * **
20623 AATAATTATCTATTTCAAATTGTTCTTACATTTTGTTTAGTCATATGACAATTGTTTTTTATCAT
1 AATAATTATCTATTTCAAATCATTATAACATTTTGTTTAGTCATAAAACAATTATTTTCAATCAT
* * * **
20688 ACAAGATTATTTGGAATGAAATAATACTAATTTATTAATCCTTCAAAAATTAATAAGAGATTTAA
66 ACAAGATTATTTAGAATAAAATAATAATAATTTATTAAAACTTCAAAAATTAATAAGAGATTTAA
* ** * **
20753 AAAAATAAATCTATTTGCAAAACCAATTCAAATGGTTATAACTATTAGAGCTGTTATATACTTTA
131 AAAAATAAATCTATTTACAAAACCAATTCAAATAATTATAACTATTAGAACAATTATATACTTTA
**
20818 AATTGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTGAAAT
196 AATTGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAAAT
20883 AAAATAAAACTAATCTAATAATATTCTGAAAATTAA-TAACTAAGAAA-TTTAAAAAATAAAAT-
261 AAAATAAAACTAATCTAATAATATT-T-AAAA--AATTAA-TAA-AAATTTTAAAAAAT-AAATC
* * *
20945 TGTTTGTCAAATTAGTTTAAATAGTTAAAACTATATG
319 TGTTTATCAAACTAGTTCAAATAGTTAAAACTATATG
* *
20982 AATAATTATCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAA-TATTTTCAATTCA
1 AATAATTATCTATTTCAAATCATTATAACATTTTGTTTAGTCATAAAACAATTATTTTCAA-TCA
* * *
21046 TACTAGCTTATTTAGAATAAAATAA-AATAAATTTATTAAAATTTCAAAAATTAATAAGTAAGAT
65 TACAAGATTATTTAGAATAAAATAATAAT-AATTTATTAAAACTTCAAAAATTAATAAG--AGAT
* * ** * * * *
21110 AATT-AAAAAATAATTTTATTTACCTAATCAATTCAAATAATTATGACTATTTGAACAATTATCT
127 --TTAAAAAAATAAATCTATTTACAAAACCAATTCAAATAATTATAACTATTAGAACAATTATAT
* * * *
21174 A-TTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACTAATGT-TTT-TGTTCATATAAGTTT
190 ACTTT-AAATTGTTATAACCTTTTGTTTTGTCATAAAAC-AAT-TATTTCTATTCATACAAGCTT
* * *
21236 GTTCAAAATAAAATAATACTAATCTATTAATATTTAAAAAATTAATAAAAATTTTAAAAAATAAA
252 ATTCAAAATAAAATAAAACTAATCTAATAATATTTAAAAAATTAATAAAAATTTTAAAAAATAAA
21301 TCTGTTTATCAAACTAGTTCAAAT
317 TCTGTTTATCAAACTAGTTCAAAT
21325 TAAGACTATT
Statistics
Matches: 286, Mismatches: 45, Indels: 25
0.80 0.13 0.07
Matches are distributed among these distances:
357 7 0.02
358 42 0.15
359 96 0.34
360 4 0.01
361 8 0.03
362 120 0.42
363 8 0.03
364 1 0.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (355 bp):
AATAATTATCTATTTCAAATCATTATAACATTTTGTTTAGTCATAAAACAATTATTTTCAATCAT
ACAAGATTATTTAGAATAAAATAATAATAATTTATTAAAACTTCAAAAATTAATAAGAGATTTAA
AAAAATAAATCTATTTACAAAACCAATTCAAATAATTATAACTATTAGAACAATTATATACTTTA
AATTGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTCAAAAT
AAAATAAAACTAATCTAATAATATTTAAAAAATTAATAAAAATTTTAAAAAATAAATCTGTTTAT
CAAACTAGTTCAAATAGTTAAAACTATATG
Found at i:22946 original size:180 final size:180
Alignment explanation
Indices: 21991--23675 Score: 1398
Period size: 180 Copynumber: 9.4 Consensus size: 180
21981 AATCTTATAA
* * * *
21991 TTCAAATATTCATAACTATTTGAATAATTATCTATTTCAAATCA-TTATGACCTATTGTTTTGTC
1 TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTGTTTTGTC
* * * * ** * *
22055 ATAAAATAATTGTTTCAATTCATATAGGCTTATTTGATATAAAATATTACTAATTTATTAATATT
65 ATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT
* * * * * * *
22120 CTAAAAATTAATGAGCAAGAGATTTAAGAAAATGAATCTGTTTA-CTAAATAAG
130 TTAAAAATTAATAAG-TAGAGATTTAA-AAAATAAATCTATTTATC-GAACAAG
* * * *
22173 TTTAAATAGTGATGACCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTATCA
1 TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
*
22238 TAAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAATAAT--TAA---ATTAATATT
66 TAAAACAATTGTTTCTATTCATACAAGCTTA-TTCAAAATAAAATAATACTAATTTATTAATATT
** * * * * * * * *
22297 CCAAAATTTAATAAGTAAAAATTTAAAAAATAAATTTGTTTTTTGAACATG
130 TTAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
* *
22348 TTCAAATAGTTC-TGACTATTTGAACAATTATTTATTTCAAATAGTTATGACCTTTTGTTTTGTG
1 TTCAAATAG-TCATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTC
* * **
22412 ATAAACCAATTGTTTCTATCCATACAAGCTTATTCTGAATAAAATAAT--TAAATTTATTAATAT
65 ATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACT-AATTTATTAATAT
** * * * * * * * * *
22475 TCCAAAATTTAATAAGTAAAAATTTTAAAAATAAATTTGTTTTTTGAACATG
129 TTTAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
* * * *
22527 TTCAAATATATC-TAACTATTTTAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTG
1 TTCAAATA-GTCATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTC
* * * * *
22591 ATGAACCAATTGTTTCTA-TCTATATAAGCTCATTCAAAATAAAATAATACTAATTTAATAATAT
65 ATAAAACAATTGTTTCTATTC-ATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
** * * * *
22655 TCCAACAATTAATAAGTAAAAGATTTAAAAAATAAATCTATTTA-CCAAGTAAG
129 TTTAAAAATTAATAAGT-AGAGATTTAAAAAATAAATCTATTTATCGAA-CAAG
* * * * * * * * **
22708 CTCAAATAGTTATAATTGTTTGAACAATTTTTTATTTCTAATAGTTATGATATTTTGTTTTGTCA
1 TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
* * * *
22773 TAAAACAATTGTTTCTATTCATACAAGTTTATGCAAAATAAAATAATACTACTTTATTAACATTT
66 TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
** *
22838 TGCAAATTAATAGGTAGGAGA-TTAAAAAATAAATCTATTTATCGAACAAG
131 TAAAAATTAATAAGTA-GAGATTTAAAAAATAAATCTATTTATCGAACAAG
* * * * *
22888 TTCAAATAGTCATGTCCATTAGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTTTCA
1 TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
* * ** ** * *
22953 TAAAACAATTGTTTTTGTTCATACAAAATTATTCAAAATAAAATAATTTTGATTTATTAATAGTT
66 TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
* * * *
23018 TAAAAATTAATAAGT---GATTTAAAAACTAAATCTATTTACCAAACCAG
131 TAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
* * * * *
23065 TTCAAATAGTCATAACTATTTGAACAATTATCTATCTCAAATCA-TAATGATC-TTTATTTTGTC
1 TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAAT-AGTTATGACCTTTTGTTTTGTC
* * *
23128 ATACAACAATTGTTTCCT-TTCATACAAGCTTATT-AAAATTAAAATGATACTAATTTAATAATA
65 ATAAAACAATTGTTT-CTATTCATACAAGCTTATTCAAAA-TAAAATAATACTAATTTATTAATA
* * * *
23191 TTTCAGAAATTAAT-A--AGAGATTTAAAAAATAAA--TATGTTAGCTGAACTAG
128 TTTTAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTAT-TTATC-GAACAAG
* * ** * * * *
23241 TTCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCA-TTCT-ATCCTTTTGCTTAGT
1 TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAAT-AGTTATGA-CCTTTTGTTTTGT
* * *** *
23304 CATAAAACAATTATTTCAATTCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACAT
64 CATAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATAT
** * * * * *
23369 TCAAAAAATT-A-AAGCAAGAGATTTAAAAAAATAAATGTGTTTACCGAACAAT
129 TTTAAAAATTAATAAG-TAGAGATTT-AAAAAATAAATCTATTTATCGAACAAG
* * * * * * *
23421 TTTAAATAGAT-ATGACTATTTAAATAATTATCTATTTAAAATTA-TTTTGACATTTTCTTTTGT
1 TTCAAATAG-TCATGACTATTTGAACAATTATCTATTTCAAA-TAGTTATGACCTTTTGTTTTGT
* * *
23484 CATAAAACAATTGTTT-TAGTTAATAAAAACTTA-TCTAAAATAAAATAATACT-ATATTATTAA
64 CATAAAACAATTGTTTCTA-TTCATACAAGCTTATTC-AAAATAAAATAATACTAAT-TTATTAA
* * * * * * **
23546 TATTTCAAAAATTATTAAGTAGGAGATTTAAAAACTAAAGT-TGTTTTTCAAAGTAG
126 TATTTTAAAAATTAATAAGTA-GAGATTTAAAAAATAAA-TCTATTTATCGAACAAG
* * * * * *
23602 TTCTAATAATTATGACTATTTCAAC-ATATAT-TAATCTCAAATAGTTATGATC-TTTGTTTTGT
1 TTCAAATAGTCATGACTATTTGAACAAT-TATCT-ATTTCAAATAGTTATGACCTTTTGTTTTGT
*
23664 CATAAAATAATT
64 CATAAAACAATT
23676 ATTTTTTATC
Statistics
Matches: 1230, Mismatches: 220, Indels: 108
0.79 0.14 0.07
Matches are distributed among these distances:
174 6 0.00
175 126 0.10
176 142 0.12
177 156 0.13
178 3 0.00
179 170 0.14
180 317 0.26
181 202 0.16
182 106 0.09
183 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
TTCAAATAGTCATGACTATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCA
TAAAACAATTGTTTCTATTCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
TAAAAATTAATAAGTAGAGATTTAAAAAATAAATCTATTTATCGAACAAG
Found at i:23400 original size:533 final size:526
Alignment explanation
Indices: 21991--23669 Score: 1485
Period size: 533 Copynumber: 3.1 Consensus size: 526
21981 AATCTTATAA
* *
21991 TTCAAATATTCATAACTATTTGAATAATTATCTATTTCAAATCATTATGACCTATTGTTTTGTCA
1 TTCAAATAATCATAACTATTTGAACAATTATCTATTTCAAATCATTATGACCT-TTGTTTTGTCA
* ** * ** *
22056 TAAAATAATTGTTTCAATTCATATAGGCTTATT-TGATATAAAATATTACTAATTTATTAATATT
65 T-AAACAATTGTTTCCTTTCATATAAGCTTATTAAAAT-TAAAATA-TACTAATTTAATAATATT
* * * * *
22120 CTAAAAATTAATGAGCAAGAGATTTAAGAAAATGAATCTGTTTACTAAATAAGTTTAAATAGTGA
127 -TCAAAATTAAT----AAGAGATTTAA-AAAATAAATATG-TTACTAAATAAGTTCAAATAGTTA
* * *
22185 TGACCATTTGAACAATTATCTATTTCAAATAGTTATGACCTTTTGTTTTA-TCATAAAACAATTG
185 AGACTATTTGAACAATTATCTATTTCAAATATTTAT--CCTTTTG-TTTAGTCATAAAACAATTG
* * * *
22249 TTTCTATTCATACAAGCTTATTTCGAATAAAATAAT--TAA---ATTAATATTCCAAAATTTAAT
247 TTTCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTCAAAAAATT-A-
* * * * * * *
22309 AAGTAA-AAATTTAAAAAATAAATTTGTTTTTTGAACATGTTCAAATAGTTC-TGACTATTTGAA
310 AAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGATCATGACTATTAGAA
* * * * * * *
22372 CAATTATTTATTTCAAATAGTTATGACCTTTTGTTTTGTGATAAACCAATTGTTTCTATCCATAC
375 CAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATAC
** ** ** * * *
22437 AAGCTTATTCTGAATAAAATAATTAAATTTATTAATATTCCAAAATTTAATAAGTAAAAATTTTA
440 AAAATTATTCAAAATAAAATAATTTTATTTATTAATATT-TAAAAATTAATAAGT--AGA-TTTA
* * ****
22502 AAAA-TAAATTTGTTTTTTGAACATG
501 AAAACTAAATCTATTTACCAAACATG
*
22527 TTCAAATATATC-TAACTATTTTAACAATTATCTATTTCAAAT-AGTTATGACCTTTTGTTTTGT
1 TTCAAATA-ATCATAACTATTTGAACAATTATCTATTTCAAATCA-TTATGACC-TTTGTTTTGT
* * * *
22590 GATGAACCAATTGTTT-CTATCTATATAAGCTCATTCAAAA-TAAAATAATACTAATTTAATAAT
63 CAT-AAACAATTGTTTCCTTTC-ATATAAGCTTATT-AAAATTAAAAT-ATACTAATTTAATAAT
* * * *
22653 ATTCCAACAATTAATAAGTAAAAGATTTAAAAAATAAATCTAT-TTACCAAGTAAGCTCAAATAG
124 ATTTCAA-AATTAATAAG----AGATTTAAAAAATAAA--TATGTTACTAAATAAGTTCAAATAG
* * * * * * *
22717 TTATA-ATTGTTTGAACAATTTTTTATTTCTAATAGTTATGAT-ATTTTGTTTTGTCATAAAACA
182 TTA-AGACTATTTGAACAATTATCTATTTCAAATA-TT-T-ATCCTTTTGTTTAGTCATAAAACA
* ** * * ****
22780 ATTGTTTCTATTCATACAAGTTTATGCAAAATAAAATAATACTACTTTATTAACATTTTGCAAAT
243 ATTGTTTCTATTCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTCAAAAAAT
* * * *
22845 TAATAGGTAGGAGA-TTAAAAAATAAATCTATTTATCGAACAAGTTCAAATAG-TCATGTCCATT
308 TAA-A-GTAAGAGATTTAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGATCATGACTATT
*
22908 AGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTTTCATAAAACAATTGTTTTTGTTC
371 AGAACAATTATCTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGTTC
22973 ATACAAAATTATTCAAAATAAAATAATTTTGATTTATTAATAGTTTAAAAATTAATAAGT-GATT
436 ATACAAAATTATTCAAAATAAAATAATTTT-ATTTATTAATA-TTTAAAAATTAATAAGTAGATT
23037 TAAAAACTAAATCTATTTACCAAACCA-G
499 TAAAAACTAAATCTATTTACCAAA-CATG
* * * * *
23065 TTCAAATAGTCATAACTATTTGAACAATTATCTATCTCAAATCATAATGATCTTTATTTTGTCAT
1 TTCAAATAATCATAACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCAT
*
23130 ACAACAATTGTTTCCTTTCATACAAGCTTATTAAAATTAAAATGATACTAATTTAATAATATTTC
66 A-AACAATTGTTTCCTTTCATATAAGCTTATTAAAATTAAAAT-ATACTAATTTAATAATATTTC
*
23195 AGAAATTAATAAGAGATTTAAAAAATAAATATGTTAGCTGAACT-AGTTCAAATAGTTAAGACTA
129 A-AAATTAATAAGAGATTTAAAAAATAAATATGTTA-CT-AAATAAGTTCAAATAGTTAAGACTA
** * * * *
23259 TCAGAATAATTATCTATTTCAAATCATTCTATCCTTTTGCTTAGTCATAAAACAATTATTTCAAT
191 TTTGAACAATTATCTATTTCAAAT-ATT-TATCCTTTTGTTTAGTCATAAAACAATTGTTTCTAT
* *
23324 TCATACAAGCTTATTTGGAATAAAATAATACTAATTTATTAACATTCAAAAAATTAAAGCAAGAG
254 TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAACATTCAAAAAATTAAAGTAAGAG
* * * * *
23389 ATTTAAAAAAATAAATGTGTTTACCGAACAATTTTAAATAGAT-ATGACTATTTA-AATAATTAT
319 ATTT-AAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGATCATGACTA-TTAGAACAATTAT
* * * * * * *
23452 CTATTTAAAATTATTTTGACATTTTCTTTTGTCATAAAACAATTGTTTTAGTTAATA-AAAACTT
382 CTATTTCAAATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAAA-TT
** *
23516 A-TCTAAAATAAAATAATACTATATTATTAATATTTCAAAAATTATTAAGTAGGAGATTTAAAAA
446 ATTC-AAAATAAAATAATTTTAT-TTATTAATATTT-AAAAATTAATAAGT---AGATTTAAAAA
* ** *
23580 CTAAAGT-TGTTTTTCAAA-GTAG
505 CTAAA-TCTATTTACCAAACAT-G
* * * * * *
23602 TTCTAATAATTATGACTATTTCAAC-ATATAT-TAATCTCAAAT-AGTTATGATCTTTGTTTTGT
1 TTCAAATAATCATAACTATTTGAACAAT-TATCT-ATTTCAAATCA-TTATGACCTTTGTTTTGT
23664 CATAAA
63 CATAAA
23670 ATAATTATTT
Statistics
Matches: 930, Mismatches: 151, Indels: 124
0.77 0.13 0.10
Matches are distributed among these distances:
531 9 0.01
532 23 0.02
533 259 0.28
534 11 0.01
535 104 0.11
536 126 0.14
537 164 0.18
538 65 0.07
539 7 0.01
540 134 0.14
541 26 0.03
542 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (526 bp):
TTCAAATAATCATAACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTGTTTTGTCAT
AAACAATTGTTTCCTTTCATATAAGCTTATTAAAATTAAAATATACTAATTTAATAATATTTCAA
AATTAATAAGAGATTTAAAAAATAAATATGTTACTAAATAAGTTCAAATAGTTAAGACTATTTGA
ACAATTATCTATTTCAAATATTTATCCTTTTGTTTAGTCATAAAACAATTGTTTCTATTCATACA
AGCTTATTTAGAATAAAATAATACTAATTTATTAACATTCAAAAAATTAAAGTAAGAGATTTAAA
AAATAAATCTGTTTATCGAACAAGTTCAAATAGATCATGACTATTAGAACAATTATCTATTTCAA
ATTGTTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTGTTCATACAAAATTATTCAAAATA
AAATAATTTTATTTATTAATATTTAAAAATTAATAAGTAGATTTAAAAACTAAATCTATTTACCA
AACATG
Found at i:24113 original size:24 final size:24
Alignment explanation
Indices: 24066--24133 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
24056 TAATTTCATT
* *
24066 AAATTATAAT-TATTTTAATAATA
1 AAATTATTATATATTATAATAATA
24089 ATAATTATTATATATTATAAT-ATA
1 A-AATTATTATATATTATAATAATA
*
24113 AATATTATTTTATATTATAAT
1 AA-ATTATTATATATTATAAT
24134 CATATTAGTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
23 2 0.05
24 29 0.74
25 8 0.21
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
AAATTATTATATATTATAATAATA
Found at i:24125 original size:19 final size:19
Alignment explanation
Indices: 24074--24132 Score: 64
Period size: 21 Copynumber: 2.9 Consensus size: 19
24064 TTAAATTATA
*
24074 ATTATTTTAATAATAATAATT
1 ATTATTTT-ATAAT-ATAAAT
24095 ATTATATATTATAATATAAAT
1 ATTAT-T-TTATAATATAAAT
*
24116 ATTATTTTATATTATAA
1 ATTATTTTATAATATAA
24133 TCATATTAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 10 0.29
20 1 0.03
21 15 0.44
22 6 0.18
23 2 0.06
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATTTTATAATATAAAT
Found at i:24138 original size:21 final size:20
Alignment explanation
Indices: 24074--24140 Score: 57
Period size: 24 Copynumber: 3.2 Consensus size: 20
24064 TTAAATTATA
*
24074 ATTATTTTA-ATAATAATA-
1 ATTATTTTATATTATAATAT
*
24092 ATTATTATATATTATAATATAAAT
1 ATTATTTTATATTAT-A-AT--AT
24116 ATTATTTTATATTATAATCAT
1 ATTATTTTATATTATAAT-AT
24137 ATTA
1 ATTA
24141 GTATTGTTGA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
18 8 0.21
19 4 0.10
20 1 0.03
21 8 0.21
22 2 0.05
23 2 0.05
24 14 0.36
ACGTcount: A:0.46, C:0.01, G:0.00, T:0.52
Consensus pattern (20 bp):
ATTATTTTATATTATAATAT
Found at i:24145 original size:24 final size:24
Alignment explanation
Indices: 24094--24156 Score: 65
Period size: 24 Copynumber: 2.5 Consensus size: 24
24084 TAATAATAAT
* *
24094 TATTATATATTATAATATAAATAT
1 TATTTTATATTATAATATAAATAG
*
24118 TATTTTATATTATAATCAT-ATTAG
1 TATTTTATATTATAAT-ATAAATAG
24142 TATTGTTGATATTAT
1 TATT-TT-ATATTAT
24157 TAATTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 22 0.67
25 4 0.12
26 7 0.21
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.54
Consensus pattern (24 bp):
TATTTTATATTATAATATAAATAG
Found at i:24762 original size:15 final size:14
Alignment explanation
Indices: 24742--24781 Score: 55
Period size: 15 Copynumber: 2.9 Consensus size: 14
24732 TATTAATAAT
24742 TAATTATAATAACAA
1 TAATTATAATAA-AA
*
24757 TAATTATAATAATA
1 TAATTATAATAAAA
24771 T-ATTATAATAA
1 TAATTATAATAA
24782 TTAAATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (14 bp):
TAATTATAATAAAA
Found at i:24796 original size:19 final size:18
Alignment explanation
Indices: 24720--24811 Score: 62
Period size: 19 Copynumber: 4.8 Consensus size: 18
24710 TTAATAATAA
*
24720 AATAATT-ATTGTTAT-T
1 AATAATTAATTATTATAT
* *
24736 AATAATTAATTATAATAAC
1 AATAATTAATTATTAT-AT
*
24755 AATAATTATAATAATATATTAT
1 AATAA-T-TAATTAT-TA-TAT
24777 AATAATTAAATTATTATAT
1 AATAATT-AATTATTATAT
*
24796 AATTTATTAATTATTA
1 AA-TAATTAATTATTA
24812 ATTATTATTT
Statistics
Matches: 59, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
16 7 0.12
17 6 0.10
19 18 0.31
20 8 0.14
21 12 0.20
22 7 0.12
23 1 0.02
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (18 bp):
AATAATTAATTATTATAT
Found at i:24814 original size:26 final size:27
Alignment explanation
Indices: 24776--24836 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
24766 TAATATATTA
* **
24776 TAATAATTAAATTATTATATAATTTAT
1 TAATTATTAAATTATTATATAATAAAT
*
24803 TAATTATT-AATTATTATTTAATAAAT
1 TAATTATTAAATTATTATATAATAAAT
24829 TAATTATT
1 TAATTATT
24837 TTATAATAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (27 bp):
TAATTATTAAATTATTATATAATAAAT
Found at i:24830 original size:19 final size:19
Alignment explanation
Indices: 24808--24845 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
24798 TTTATTAATT
24808 ATTAATTATTATT-TAATAA
1 ATTAATTATT-TTATAATAA
24827 ATTAATTATTTTATAATAA
1 ATTAATTATTTTATAATAA
24846 TAATATATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTAATTATTTTATAATAA
Found at i:24867 original size:89 final size:91
Alignment explanation
Indices: 24659--24878 Score: 201
Period size: 89 Copynumber: 2.5 Consensus size: 91
24649 TATTTTAATG
* * * *
24659 TTTTATAAT-ATAATATATATTACTATTTATAATAGTT-AATTAGGTATTAGTTTAATAATAAAA
1 TTTTATAATAATAATATATATTTCAATTTATAATAATTAAATTAGGTATTAATTTAATAATAAAA
*
24722 TAATTATTGTTATTAATAATTAATTA
66 TAATTATTGATATTAATAATTAATTA
* * * * * *
24748 --TAATAACAATAAT-TATA-ATAATATATTATAATAATTAAATTA-TTATATAATTTATTAAT-
1 TTTTATAATAATAATATATATTTCA-AT-TTATAATAATTAAATTAGGTAT-TAATTTAATAATA
* *
24807 TATTAATTATT-AT-TTAATAAATTAATTA
63 AAATAATTATTGATATTAAT-AATTAATTA
24835 TTTTATAATAATAATATATATTTCAATTTATAAT-ATATAAATTA
1 TTTTATAATAATAATATATATTTCAATTTATAATAAT-TAAATTA
24879 AAAAATCATT
Statistics
Matches: 103, Mismatches: 17, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
86 5 0.05
87 21 0.20
88 29 0.28
89 40 0.39
90 6 0.06
91 2 0.02
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.49
Consensus pattern (91 bp):
TTTTATAATAATAATATATATTTCAATTTATAATAATTAAATTAGGTATTAATTTAATAATAAAA
TAATTATTGATATTAATAATTAATTA
Found at i:25002 original size:34 final size:34
Alignment explanation
Indices: 24943--25011 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
24933 ATAGTCTTAA
24943 ATATATTTTAAATAATATTTAAATTTTAAAATAT
1 ATATATTTTAAATAATATTTAAATTTTAAAATAT
* *
24977 ATATATTATTATATAA-A-TTACAATTTTAAATTAT
1 ATATATT-TTAAATAATATTTA-AATTTTAAAATAT
25011 A
1 A
25012 CAGTATTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 3 0.10
34 21 0.68
35 7 0.23
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (34 bp):
ATATATTTTAAATAATATTTAAATTTTAAAATAT
Found at i:25462 original size:25 final size:25
Alignment explanation
Indices: 25434--25481 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25424 ACTTCAAATA
* *
25434 AATACTATAATTAATTATTTATAAT
1 AATAATATAATTAAATATTTATAAT
*
25459 AATAATTTAATTAAATATTTATA
1 AATAATATAATTAAATATTTATA
25482 TTTAAATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (25 bp):
AATAATATAATTAAATATTTATAAT
Found at i:25946 original size:17 final size:17
Alignment explanation
Indices: 25899--25958 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
25889 AATTATTTAG
*
25899 TTTAATTAT-A-ATATA
1 TTTAATTATGATAAATA
* *
25914 TTTATATTATAAATAAGTA
1 TTTA-ATTAT-GATAAATA
*
25933 TTTAGTTATGATAAATA
1 TTTAATTATGATAAATA
25950 TTTAATTAT
1 TTTAATTAT
25959 AATTAAATTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 14 0.40
18 5 0.14
19 7 0.20
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (17 bp):
TTTAATTATGATAAATA
Found at i:26071 original size:13 final size:13
Alignment explanation
Indices: 26055--26142 Score: 60
Period size: 13 Copynumber: 6.8 Consensus size: 13
26045 ATTATAATAT
*
26055 TAATAATTTTTAA
1 TAATAATTTATAA
26068 TAATAATTTATAA
1 TAATAATTTATAA
* *
26081 TACT-ATTAATAA
1 TAATAATTTATAA
26093 T-AT-A-TTATAA
1 TAATAATTTATAA
*
26103 AAATAATATTATAATA
1 TAATAAT-TTAT-A-A
26119 TAATAATTATATTAA
1 TAATAATT-TA-TAA
26134 -AATAATTTA
1 TAATAATTTA
26143 AAACTTATAA
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
10 5 0.08
11 4 0.07
12 9 0.15
13 17 0.28
14 11 0.18
15 3 0.05
16 10 0.17
17 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.45
Consensus pattern (13 bp):
TAATAATTTATAA
Found at i:26130 original size:19 final size:18
Alignment explanation
Indices: 26067--26137 Score: 60
Period size: 19 Copynumber: 4.1 Consensus size: 18
26057 ATAATTTTTA
* * *
26067 ATAATAATTTATAATACT
1 ATAATAATATATTATAAT
26085 ATTAATAATATATTATAA-
1 A-TAATAATATATTATAAT
26103 A-AAT-A-ATATTATAAT
1 ATAATAATATATTATAAT
*
26118 ATAATAATTATATTAAAAT
1 ATAATAA-TATATTATAAT
26137 A
1 A
26138 ATTTAAAACT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
14 9 0.21
15 2 0.05
16 6 0.14
17 1 0.02
18 2 0.05
19 23 0.53
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAATAATATATTATAAT
Found at i:26138 original size:22 final size:23
Alignment explanation
Indices: 26038--26139 Score: 65
Period size: 22 Copynumber: 4.6 Consensus size: 23
26028 TTACTTATAA
*
26038 ATATGTAATTATAATATTAATAATT
1 ATAT-TAATAATAATA-TAATAATT
*
26063 -T-TTAATAATAAT-TTATAA-T
1 ATATTAATAATAATATAATAATT
* **
26082 ACTATTAATAAT-ATATTATAAAA
1 A-TATTAATAATAATATAATAATT
* *
26105 ATAAT-ATTATAATATAATAATT
1 ATATTAATAATAATATAATAATT
26127 ATATTAA-AATAAT
1 ATATTAATAATAAT
26140 TTAAAACTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
19 1 0.02
20 5 0.08
21 7 0.12
22 43 0.72
23 3 0.05
24 1 0.02
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.45
Consensus pattern (23 bp):
ATATTAATAATAATATAATAATT
Found at i:26140 original size:14 final size:15
Alignment explanation
Indices: 26084--26137 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
26074 TTTATAATAC
26084 TATTAATAATATATTA
1 TATTAA-AATATATTA
26100 TA--AAAATAATATTA
1 TATTAAAAT-ATATTA
* *
26114 TAATATAATA-ATTA
1 TATTAAAATATATTA
26128 TATTAAAATA
1 TATTAAAATA
26138 ATTTAAAACT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 3 0.09
14 22 0.69
15 1 0.03
16 6 0.19
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TATTAAAATATATTA
Found at i:26319 original size:21 final size:21
Alignment explanation
Indices: 26269--26319 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
26259 TAATTAAAGA
26269 TATTAAATTATTTTAACAATT
1 TATTAAATTATTTTAACAATT
* * **
26290 TACTCAATTATTTTATTAATT
1 TATTAAATTATTTTAACAATT
26311 TATTAAATT
1 TATTAAATT
26320 TAATTAAATA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTAAATTATTTTAACAATT
Found at i:26474 original size:20 final size:21
Alignment explanation
Indices: 26436--26487 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
26426 ATAATGTTTT
26436 TAATTAA-ATT-TGTTTAATAA
1 TAATTAATATTATG-TTAATAA
*
26456 TGA-TAATATTATGTTAATAA
1 TAATTAATATTATGTTAATAA
26476 TAATTAATATTA
1 TAATTAATATTA
26488 ATATAATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 3 0.11
20 14 0.52
21 10 0.37
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.48
Consensus pattern (21 bp):
TAATTAATATTATGTTAATAA
Found at i:26499 original size:13 final size:15
Alignment explanation
Indices: 26458--26502 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
26448 TTTAATAATG
*
26458 ATAAT-ATTATGTTA
1 ATAATAATTATATTA
26472 ATAATAATTAATATTA
1 ATAATAATT-ATATTA
26488 AT-ATAATT-TATTA
1 ATAATAATTATATTA
26501 AT
1 AT
26503 TTTAAATTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 7 0.25
14 5 0.18
15 9 0.32
16 7 0.25
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (15 bp):
ATAATAATTATATTA
Found at i:26605 original size:14 final size:14
Alignment explanation
Indices: 26588--26629 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
26578 TAATAAGTAC
26588 AATATAATTAATTA
1 AATATAATTAATTA
26602 AATATAATTATTATTA
1 AATATAATTA--ATTA
*
26618 TATATAA-TAATT
1 AATATAATTAATT
26630 TATTTATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.12
14 10 0.40
15 2 0.08
16 10 0.40
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATATAATTAATTA
Found at i:26622 original size:16 final size:16
Alignment explanation
Indices: 26589--26643 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
26579 AATAAGTACA
*
26589 ATATAATTA--ATTAA
1 ATATAATTATTATTAT
26603 ATATAATTATTATTAT
1 ATATAATTATTATTAT
*
26619 ATATAATAATTTATT-T
1 ATATAATTA-TTATTAT
26635 ATA-AATTAT
1 ATATAATTAT
26644 AAATTTATAT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
14 10 0.29
15 4 0.11
16 16 0.46
17 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATAATTATTATTAT
Found at i:27207 original size:20 final size:20
Alignment explanation
Indices: 27164--27207 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
27154 ATGATAAAAC
*
27164 AAATAAACTATTTTAATTAT
1 AAATAAAATATTTTAATTAT
27184 -AATAAAATAATTTT-ATTAT
1 AAATAAAAT-ATTTTAATTAT
27203 AAATA
1 AAATA
27208 TTGTAAATGA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATAAAATATTTTAATTAT
Found at i:27545 original size:20 final size:20
Alignment explanation
Indices: 27517--27567 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
27507 GAAGAAAATT
* *
27517 TAATGTTATAATATATAAAA
1 TAATTTTATAATAAATAAAA
* *
27537 TAATTTTATATTAAATAAAT
1 TAATTTTATAATAAATAAAA
27557 TAATTTATATA
1 TAATTT-TATA
27568 TTTTTGATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
20 22 0.85
21 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
TAATTTTATAATAAATAAAA
Found at i:27621 original size:15 final size:15
Alignment explanation
Indices: 27579--27644 Score: 50
Period size: 15 Copynumber: 4.4 Consensus size: 15
27569 TTTTGATTAA
27579 TTAT-TATAAATATAT
1 TTATATATAAATA-AT
* *
27594 TATAATAATATAAGTATT
1 T-T-AT-ATATAAATAAT
27612 TTATATATAAATAA-
1 TTATATATAAATAAT
27626 TT-TATAT-AATAAT
1 TTATATATAAATAAT
27639 TTATAT
1 TTATAT
27645 TGTTATTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
12 5 0.12
13 7 0.17
14 5 0.12
15 9 0.22
16 3 0.07
17 3 0.07
18 2 0.05
19 7 0.17
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
TTATATATAAATAAT
Found at i:27638 original size:12 final size:13
Alignment explanation
Indices: 27615--27644 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
27605 AAGTATTTTA
27615 TATATAAATAATT
1 TATATAAATAATT
27628 TATAT-AATAATT
1 TATATAAATAATT
27640 TATAT
1 TATAT
27645 TGTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:27884 original size:27 final size:28
Alignment explanation
Indices: 27835--27907 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 28
27825 TAATTATAAA
* * *
27835 TAATATATAATTTATTAATTTT-ATTTAAT
1 TAATAAAT-ATTTATTTATTTTAATTT-AG
27864 TAATAAATATTTATTTA-TTTAATTTAG
1 TAATAAATATTTATTTATTTTAATTTAG
27891 TAATAAATATTTATTTA
1 TAATAAATATTTATTTA
27908 AACTAAATAC
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
27 21 0.52
28 12 0.30
29 7 0.17
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.56
Consensus pattern (28 bp):
TAATAAATATTTATTTATTTTAATTTAG
Found at i:27921 original size:27 final size:27
Alignment explanation
Indices: 27864--27922 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
27854 TTTATTTAAT
** * *
27864 TAATAAATATTTATTTATTTAATTTAG
1 TAATAAATATTTATTTAACTAATATAC
27891 TAATAAATATTTATTTAAACTAA-ATAC
1 TAATAAATATTTATTT-AACTAATATAC
27918 TAATA
1 TAATA
27923 TTGATATTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 23 0.85
28 4 0.15
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.47
Consensus pattern (27 bp):
TAATAAATATTTATTTAACTAATATAC
Found at i:28619 original size:19 final size:20
Alignment explanation
Indices: 28597--28635 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
28587 AAAAAGCAAC
* *
28597 AATTAATTAATTAT-ATTAT
1 AATTAAATAAATATAATTAT
28616 AATTAAATAAATATAATTAT
1 AATTAAATAAATATAATTAT
28636 TTATTAATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATTAAATAAATATAATTAT
Found at i:29364 original size:19 final size:19
Alignment explanation
Indices: 29313--29364 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
29303 ATTAAATAAA
29313 TATTTA-AATAATAACTAT
1 TATTTATAATAATAACTAT
*
29331 TGTTTATAA-ATATAA-TAT
1 TATTTATAATA-ATAACTAT
29349 TAATTTATAATAATAA
1 T-ATTTATAATAATAA
29365 ACTACTAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
18 10 0.36
19 17 0.61
20 1 0.04
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (19 bp):
TATTTATAATAATAACTAT
Found at i:29489 original size:17 final size:15
Alignment explanation
Indices: 29463--29499 Score: 56
Period size: 17 Copynumber: 2.3 Consensus size: 15
29453 TATTAAAGGA
29463 TATTATTATAATAAGT
1 TATTATTATAATAA-T
29479 TATTCATTATAATAAT
1 TATT-ATTATAATAAT
29495 TATTA
1 TATTA
29500 ATAATTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 1 0.05
16 9 0.45
17 10 0.50
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (15 bp):
TATTATTATAATAAT
Found at i:30502 original size:17 final size:15
Alignment explanation
Indices: 30484--30513 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
30474 TGAATTAGTT
30484 ATTATT-AAATATAA
1 ATTATTAAAATATAA
30498 ATTATTAAAATATAA
1 ATTATTAAAATATAA
30513 A
1 A
30514 CTAAATAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATTAAAATATAA
Found at i:30944 original size:6 final size:6
Alignment explanation
Indices: 30915--31032 Score: 66
Period size: 6 Copynumber: 19.0 Consensus size: 6
30905 TATAAATTGG
* *
30915 ATATTA ATACTTA ATTATTA ATATTT ATATAA ATATT- ATAATTA ATATTA
1 ATATTA ATA-TTA A-TATTA ATATTA ATATTA ATATTA AT-ATTA ATATTA
* * * *
30965 TTA-TA TATATTGA ATATTAA ATATTAA ATATT- -TAATA ATATTT ATAATA
1 ATATTA -ATATT-A ATATT-A ATATT-A ATATTA ATATTA ATATTA ATATTA
31014 ATAATT- ATAGTTA ATATTA
1 AT-ATTA ATA-TTA ATATTA
31033 TTTGAAATAA
Statistics
Matches: 87, Mismatches: 13, Indels: 24
0.70 0.10 0.19
Matches are distributed among these distances:
4 3 0.03
5 5 0.06
6 42 0.48
7 34 0.39
8 3 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.49
Consensus pattern (6 bp):
ATATTA
Found at i:31006 original size:31 final size:31
Alignment explanation
Indices: 30928--31006 Score: 72
Period size: 32 Copynumber: 2.5 Consensus size: 31
30918 TTAATACTTA
* * *
30928 ATTATTAATATTTATATAAATATTATAATTAAT
1 ATTA-TAATATATAT-TGAATATTAAAATTAAT
*
30961 ATTATTATATATATTGAATATTAAATATTAAAT
1 ATTATAATATATATTGAATATTAAA-ATT-AAT
30994 ATT-TAATA-ATATT
1 ATTATAATATATATT
31007 TATAATAATA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 14 0.36
32 15 0.38
33 10 0.26
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (31 bp):
ATTATAATATATATTGAATATTAAAATTAAT
Found at i:31010 original size:56 final size:57
Alignment explanation
Indices: 30868--31021 Score: 144
Period size: 56 Copynumber: 2.7 Consensus size: 57
30858 GTTAGCTATA
* * * *
30868 ATTAAATATGAAAT-CTTAATATTATTTATTATTAAT-TTA-TAAATTGGATATTAAT
1 ATTAAATATTAAATATTTAATAATATTTATAATTAATATTATTAAATT-GATATTAAT
* *
30923 ACTTAATTATT-AATATTTATATAA-ATATTATAATTAATATTATTATA-T-ATATTGAAT
1 A-TTAAATATTAAATATTTA-ATAATAT-TTATAATTAATATTATTAAATTGATATT-AAT
30980 ATTAAATATTAAATATTTAATAATATTTATAA-TAATAATTAT
1 ATTAAATATTAAATATTTAATAATATTTATAATTAAT-ATTAT
31022 AGTTAATATT
Statistics
Matches: 82, Mismatches: 7, Indels: 19
0.76 0.06 0.18
Matches are distributed among these distances:
55 8 0.10
56 40 0.49
57 27 0.33
58 4 0.05
59 3 0.04
ACGTcount: A:0.47, C:0.01, G:0.03, T:0.49
Consensus pattern (57 bp):
ATTAAATATTAAATATTTAATAATATTTATAATTAATATTATTAAATTGATATTAAT
Found at i:31157 original size:16 final size:16
Alignment explanation
Indices: 31127--31169 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
31117 TCTATACAAT
*
31127 TATTAATTA-ATATTA
1 TATTTATTATATATTA
31142 TATTTATTATATATTA
1 TATTTATTATATATTA
*
31158 TAATTA-TATATA
1 TATTTATTATATA
31170 ATAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATTATATATTA
Found at i:31157 original size:22 final size:22
Alignment explanation
Indices: 31138--31206 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
31128 ATTAATTAAT
31138 ATTATATTTATTATATATTATA
1 ATTATATTTATTATATATTATA
* * *
31160 ATTATATATAATAAATA-TATA
1 ATTATATTTATTATATATTATA
*
31181 ATTATATTAATTATAATATTTATA
1 ATTATATTTATTAT-ATA-TTATA
31205 AT
1 AT
31207 AAGTAAAAAT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
21 14 0.38
22 17 0.46
24 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTATATTTATTATATATTATA
Found at i:31165 original size:13 final size:13
Alignment explanation
Indices: 31125--31186 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
31115 AATCTATACA
31125 ATTATTAATTA-AT
1 ATTA-TAATTATAT
31138 ATTATATTTATTATAT
1 ATTATA---ATTATAT
31154 ATTATAATTATAT
1 ATTATAATTATAT
* *
31167 ATAATAAATATAT
1 ATTATAATTATAT
31180 AATTATA
1 -ATTATA
31187 TTAATTATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.05
13 22 0.54
14 5 0.12
15 4 0.10
16 8 0.20
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATAATTATAT
Found at i:31204 original size:26 final size:27
Alignment explanation
Indices: 31127--31204 Score: 74
Period size: 26 Copynumber: 2.9 Consensus size: 27
31117 TCTATACAAT
*
31127 TATTA-ATTAA-TATTATATTTATTATA
1 TATTATATTAATTATAATATTTA-TATA
**
31153 TATTATAATT-ATATATAATAAATATATA
1 TATTAT-ATTAAT-TATAATATTTATATA
31181 -ATTATATTAATTATAATATTTATA
1 TATTATATTAATTATAATATTTATA
31205 ATAAGTAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
26 19 0.45
27 8 0.19
28 7 0.17
29 8 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTATATTAATTATAATATTTATATA
Found at i:31322 original size:18 final size:17
Alignment explanation
Indices: 31299--31347 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 17
31289 ATAACTTAAT
31299 TTATAATATAATAAATTA
1 TTATAATATAAT-AATTA
31317 TTATAAATATAATAATTA
1 TTAT-AATATAATAATTA
31335 TTATATATATAAT
1 TTATA-ATATAAT
31348 TTAAGAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 1 0.03
18 20 0.69
19 8 0.28
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATAATATAATAATTA
Found at i:31382 original size:75 final size:79
Alignment explanation
Indices: 31247--31417 Score: 192
Period size: 75 Copynumber: 2.2 Consensus size: 79
31237 TATAAAACAT
* *
31247 TATATAATTATTATTTATTATAATTTAATAAAAATAATATTTATAACTTAATTTATAATATAAT-
1 TATATAATTATTATATATTATAATTTAATAAAAATAATATTGATAACTTAATTTATAATATAATG
*
31311 AAATTATTATAAATA
66 AAACTATT-TAAATA
* * * *
31326 TA-ATAATTATTATATA-TATAATTTAA-GAATAT-ATATTGATTA-TTATTTTAGTAATATAAT
1 TATATAATTATTATATATTATAATTTAATAAAAATAATATTGATAACTTAATTTA-TAATATAAT
*
31386 GAAACTATTTATATA
65 GAAACTATTTAAATA
31401 TATATAAATTAATTATA
1 TATAT-AATT-ATTATA
31418 ATTCAAATCA
Statistics
Matches: 79, Mismatches: 8, Indels: 11
0.81 0.08 0.11
Matches are distributed among these distances:
74 7 0.09
75 24 0.30
76 13 0.16
77 14 0.18
78 19 0.24
79 2 0.03
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (79 bp):
TATATAATTATTATATATTATAATTTAATAAAAATAATATTGATAACTTAATTTATAATATAATG
AAACTATTTAAATA
Found at i:31695 original size:16 final size:16
Alignment explanation
Indices: 31656--31689 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
31646 GTTATTCATG
*
31656 ATATTATATTTAATTA
1 ATATTATATTTAAATA
31672 ATATTATATTTAAATA
1 ATATTATATTTAAATA
31688 AT
1 AT
31690 TGTATAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATATTATATTTAAATA
Found at i:32158 original size:180 final size:180
Alignment explanation
Indices: 31840--32176 Score: 399
Period size: 180 Copynumber: 1.9 Consensus size: 180
31830 AGAAAGAGAT
* ** * * *** * *
31840 TTAAAAAGTAAATCTGCTTACCAAACTATTTCAAATAGTTTTGACTATTTGAATAATTATCTATT
1 TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATAATTATCTATT
* * * *
31905 TCAAATCATTATAACCTTTTATTTTGTCATCAAATAATTTGTTCTATTTATACTATTTTATTTGA
66 TCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTTGTTCTATTTATACAATCTTATTTGA
*
31970 AAAAAATAATGCAAATTTAATAATATTCCAAAACTTAATAACCAAAAAAA
131 AAAAAATAATACAAATTTAATAATATTCCAAAACTTAATAACCAAAAAAA
*
32020 TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATGATTATCTATT
1 TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATAATTATCTATT
** * * * * *
32085 TCAAATTGTTATGACCTTTTCTTTTGTCATAAAACAA-TTGTTTTGTTTGTACAATCTTATTCAT
66 TCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTTGTTCTATTTATACAATCTTATT--T
** * *
32149 -ATTAAAATAATACTAATTTCATAATATT
129 GAAAAAAATAATACAAATTTAATAATATT
32177 TAAAAAATAA
Statistics
Matches: 128, Mismatches: 27, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
179 19 0.15
180 108 0.84
181 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.41
Consensus pattern (180 bp):
TTAAAAAATAAATCTAATTACCAAACCAATTCAAATAGTTAAAACTATATAAATAATTATCTATT
TCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTTGTTCTATTTATACAATCTTATTTGA
AAAAAATAATACAAATTTAATAATATTCCAAAACTTAATAACCAAAAAAA
Found at i:32338 original size:156 final size:156
Alignment explanation
Indices: 32049--32339 Score: 365
Period size: 155 Copynumber: 1.9 Consensus size: 156
32039 ACCAAACCAA
* * * * *
32049 TTCAAATAGTTAAAACTATATAAATGATTATCTATTTCAAATTGTTATGACCTTTTCTTTTGTCA
1 TTCAAATAGTTAAAACTATATAAATAATTATATATTTCAAATCGTTATGACCATTTCTTTAGTCA
** ** * * * *
32114 TAAAACAATTGTTTTGTTTGTACAATCTTATTCATATTAAAATAATACTAATTTCATAATATTTA
66 TAAAACAATTGTTTAATTCATACAAGCTTATTCAGAATAAAATAATACTAATTTCATAACATTTA
32179 AAAAATAAATTTATCTATTGAATCAT
131 AAAAATAAATTTATCTATTGAATCAT
* *
32205 TTCAAATGGTTAAGACTAT-TAGAATAATTATATATTTCAAATCGTT-TGACCATTT-TTTAGTC
1 TTCAAATAGTTAAAACTATATA-AATAATTATATATTTCAAATCGTTATGACCATTTCTTTAGTC
* *
32267 ATAAAACAATTGTTTCAATTCATACAAGCTTATTTAGAATAAATTAATACTAATTT-ATTAACAT
65 ATAAAACAATTGTTT-AATTCATACAAGCTTATTCAGAATAAAATAATACTAATTTCA-TAACAT
*
32331 TTGAAAAAT
128 TTAAAAAAT
32340 TAATAAGAAA
Statistics
Matches: 114, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
154 22 0.19
155 54 0.47
156 38 0.33
ACGTcount: A:0.40, C:0.10, G:0.07, T:0.43
Consensus pattern (156 bp):
TTCAAATAGTTAAAACTATATAAATAATTATATATTTCAAATCGTTATGACCATTTCTTTAGTCA
TAAAACAATTGTTTAATTCATACAAGCTTATTCAGAATAAAATAATACTAATTTCATAACATTTA
AAAAATAAATTTATCTATTGAATCAT
Found at i:32655 original size:176 final size:178
Alignment explanation
Indices: 32218--33195 Score: 735
Period size: 176 Copynumber: 5.5 Consensus size: 178
32208 AAATGGTTAA
* * * * * *
32218 GACTATTAGAATAATTATATATTTCAAATCGTT-TGACCATTT-TTTAGTCATAAAACAATTG-T
1 GACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
* * * *
32280 TTCAATTCATACAAGCTTATTTAGAATAAATTAATACTAATTTATTAACATTTGAAAAATTAATA
66 TTTAA-TCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT-
* * * * * *
32345 AGAAAGAGATTTAAAAAATAAATCTATCTGCCGAACAAGTTCAAATAGTTAT
129 --AAACAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAATTAT
* * * * * *
32397 TATTATGTGAACT-ATTATCTATTTAAAAACATTATAACCTTTTAATTTGTCATAAAACAATTGT
1 GACTATTTGAA-TAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGT
** * **
32461 TTCAGTTAAT-AT--AAGCTTAGATGGAATAAAATAATACTAATTTATTAATATTTCCTAAATTA
65 TT---TTAATCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTA
* * *
32523 ATAAA-A-ATTTAAAAAATAAATCTGTTTACCAAATCAGTTAAAATAATTAT
127 ATAAACAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAATTAT
* * * *
32573 GGCCATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAATACAATTGTT
1 GACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
* * *
32638 TTTTATCATACAAGCTTA-TTCGAAATAAAATAATACTAATTGATTAATATTTCAAAAA-TAATA
66 TTTAATCATACAAGCTTATTTAG-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATA
*
32701 GGTAACAGATTTAAACAATAAATCTATTTACCAAACCAGTTCAAATAATTAT
130 ---AACAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAATTAT
* * * ** *
32753 GACTATTTGAATAATTATCAATCTCAAATCGTTA-AAATTTTTGTTTTGTCATAAAACAATTGTT
1 GACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
* * * * *
32817 TCTAATCATAGAAGCCTATTTAG-TTAAAAATAATACTAATTTAATAATATTTCAAAAATTAAT-
66 TTTAATCATACAAGCTTATTTAGAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATA
* * * * * * * * *
32880 AAGAGATTTAAAAATTAAATATGTTTGCTAAACCAGTTCAAATAGTAAA
130 AACAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAATTAT
* * * * ** *
32929 AACAATTAGAATAATTATCTATTTCAAAT-AGTTCA-AACCTTTTGTTTACTCATAAAA-TATT-
1 GACTATTTGAATAATTATCTATTTCAAATCA-TT-ATAACCTTTTATTTTGTCATAAAACAATTG
* * ** * * * * * * * **
32990 TCTTTCATGTCATATTATCTTATTTGGAATAAAATAATCCAAAGTTATGAACATTTGGAAAATTA
64 T-TTTTA-ATCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTA
* * * *
33055 ATAAGCAAAAGATTTGAAAAAATAAATTTGTTTACCAAACAAGCTT-AAA-AAGTTAT
127 AT-A--AACAGATTT-AAAAAATAAATCTATTTACCAAACCAG-TTCAAATAA-TTAT
* * * * *
33111 GACTATTTG-ATAAATTAT-TTTTATAAAATCGTTATGACCTTTTGTTTT-TAACATAAAACAAT
1 GACTATTTGAAT-AATTATCTATT-TCAAATCATTATAACCTTTTATTTTGT--CATAAAACAAT
* *
33173 TG-TTTCAATTCATAAAAGCTTAT
62 TGTTTTTAA-TCATACAAGCTTAT
33196 CCAAAATAAA
Statistics
Matches: 631, Mismatches: 127, Indels: 78
0.75 0.15 0.09
Matches are distributed among these distances:
173 4 0.01
174 2 0.00
175 9 0.01
176 200 0.32
177 62 0.10
178 7 0.01
179 93 0.15
180 84 0.13
181 77 0.12
182 59 0.09
183 27 0.04
184 4 0.01
185 3 0.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.39
Consensus pattern (178 bp):
GACTATTTGAATAATTATCTATTTCAAATCATTATAACCTTTTATTTTGTCATAAAACAATTGTT
TTTAATCATACAAGCTTATTTAGAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAA
ACAGATTTAAAAAATAAATCTATTTACCAAACCAGTTCAAATAATTAT
Found at i:32849 original size:355 final size:356
Alignment explanation
Indices: 32222--33116 Score: 848
Period size: 356 Copynumber: 2.5 Consensus size: 356
32212 GGTTAAGACT
* *
32222 ATTAGAATAATTATATATTTCAAATCGTTTGACCATTTTTTAGTCATAAAACAATTGTTTCAATT
1 ATTAGAATAATTATCTATTTCAAATCATTTGACCATTTTTTAGTCATAAAACAATTGTTTCAATT
* * * * *
32287 CATACAAGCTTATTTAGAATAAATTAATACTAATTTATTAACATTTGAAAAATTAATAAGAAAGA
66 CATACAAGCTTATTGAGAATAAAATAATACTAATTGATTAACATTTCAAAAATTAATAAGAAACA
* * * * * *
32352 GATTTAAAAAATAAATCTATCTGCCGAACAAGTTCAAATAGTTATTATTATGTGAACTATTATCT
131 GATTTAAAAAATAAATCTATCTACCAAACAAGTTCAAATAATTATGACTATGTGAACTATTATCA
* * * * *
32417 ATTTAAAAACATTATAACCTTTTAATTTGTCATAAAACAATTGTTTCAGTTAATATAAGCTTAGA
196 ATCTAAAAACATTATAAACTTTTAATTTGTCATAAAACAATTGTTTCAGATAATAGAAGCCTAGA
* ** *
32482 TGGAATAAAATAATACTAATTTATTAATATTTCCTAAATTAATAA-AAATTTAAAAAATAAATCT
261 TGGAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAATTTAAAAAATAAATAT
* * *** *
32546 GTTTACCAAATCAGTTAAAATAATTATGGCC
326 GTTTACCAAACCAGTTAAAATAATAAAAACA
* * * * **
32577 ATTTGAATAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTCATAATACAATTGTTT-TT
1 ATTAGAATAATTATCTATTTCAAATCATT-TGACCATTT-TTTAGTCATAAAACAATTGTTTCAA
* * *
32641 TATCATACAAGCTTATTCGA-AATAAAATAATACTAATTGATTAATATTTCAAAAA-TAATAGGT
64 T-TCATACAAGCTTATT-GAGAATAAAATAATACTAATTGATTAACATTTCAAAAATTAATAAGA
* * * *
32704 AACAGATTTAAACAATAAATCTATTTACCAAACCAGTTCAAATAATTATGACTATTTGAA-TAAT
127 AACAGATTTAAAAAATAAATCTATCTACCAAACAAGTTCAAATAATTATGACTATGTGAACT-AT
* * * * ** *
32768 TATCAATCTCAAATCGTTA-AAATTTTTGTTTTGTCATAAAACAATTGTTTCTA-ATCATAGAAG
191 TATCAATCTAAAAACATTATAAACTTTTAATTTGTCATAAAACAATTGTTTC-AGATAATAGAAG
** * * * *
32831 CCTATTTAG-TTAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAT
255 CCTAGATGGAAT-AAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAATTTAAAAAA
* * * *
32895 TAAATATGTTTGCTAAACCAGTTCAAATAGTAAAAACA
319 TAAATATGTTTACCAAACCAGTTAAAATAATAAAAACA
** * * * * *
32933 ATTAGAATAATTATCTATTTCAAAT-AGTTCAAACCTTTTGTTTACTCATAAAATATTTCTTTC-
1 ATTAGAATAATTATCTATTTCAAATCA-TT-TGACCATTT-TTTAGTCATAAAACAATTGTTTCA
** * * * * **
32996 ATGTCATATTATCTTATTTG-GAATAAAATAATCCAAAGTT-ATGAACATTTGGAAAATTAATAA
63 AT-TCATACAAGCTTA-TTGAGAATAAAATAATACTAA-TTGATTAACATTTCAAAAATTAATAA
* * *
33059 GCAAA-AGATTTGAAAAAATAAATTTGTTTACCAAACAAGCTT-AAA-AAGTTATGACTAT
125 G-AAACAGATTT-AAAAAATAAATCTATCTACCAAACAAG-TTCAAATAA-TTATGACTAT
33117 TTGATAAATT
Statistics
Matches: 436, Mismatches: 86, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
354 1 0.00
355 104 0.24
356 206 0.47
357 84 0.19
358 39 0.09
359 2 0.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (356 bp):
ATTAGAATAATTATCTATTTCAAATCATTTGACCATTTTTTAGTCATAAAACAATTGTTTCAATT
CATACAAGCTTATTGAGAATAAAATAATACTAATTGATTAACATTTCAAAAATTAATAAGAAACA
GATTTAAAAAATAAATCTATCTACCAAACAAGTTCAAATAATTATGACTATGTGAACTATTATCA
ATCTAAAAACATTATAAACTTTTAATTTGTCATAAAACAATTGTTTCAGATAATAGAAGCCTAGA
TGGAATAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAGAAATTTAAAAAATAAATAT
GTTTACCAAACCAGTTAAAATAATAAAAACA
Found at i:33756 original size:180 final size:180
Alignment explanation
Indices: 33316--35435 Score: 1650
Period size: 180 Copynumber: 11.9 Consensus size: 180
33306 ATGTTTTGTC
** * * * *
33316 ATAAAATAATTTTAATTTATTAATATTTCAAAAATTAATAAGT---A-ATTTAAAAAGTGAATCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
* * * ** * * * * * * *
33377 ATTTGCGAAATTAGTTCAAATAATTATG-GTCATTTCAATAATCATCTATTTCAAATCGTTATCA
66 GTTTACCAAACAAGTTCAAATAGTTATGACT-ATTTGAACAATTAT-TATTTCAAATCATTATGA
* * * * * * *
33441 CCTTTTATTTGGTCATATAACAATT-TTT-TTTATCATACATGATTATTCCAA
129 CCTTTTGTTTTGTCATAAAACAATTGTTTCTGT-TCATACAAGCTTATTCGAA
* * ** *
33492 ATAAAATAATAATAATTTATTAATCTTTTAAAAA-T--TAA-TAAGAGATTTAAAAAATGAATTT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
* * * * *
33553 GTTTATCGAACCAA-TTCAAATAGTTATGACTATTTGAACAATCTA-TACTTCAAATTATTATAA
66 GTTTA-CCAAACAAGTTCAAATAGTTATGACTATTTGAACAAT-TATTATTTCAAATCATTATGA
* * *
33616 CCTTTTGTTATGTCATAAAACAATTATTTCTGTTCATACAAGCTTATTCAAA
129 CCTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
* * * * *
33668 ATAAAACAATACTAATATAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAATTT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
**** * * * * * * *
33733 GTTTGTTGAACCACTTTAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAAC
66 GTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT-TATTTCAAATCATTATGAC
* * ** * *
33798 C-TTTATCTTGTCATAAAAC-ATT-TTCTCAATTCATACTAGCTTATTCAAA
130 CTTTTGTTTTGTCATAAAACAATTGTT-TCTGTTCATACAAGCTTATTCGAA
* ** *
33847 ATAAAATAA-AATAAATTTATTAATATTTTAAAAAATAATAAGTAAGAGATTTAAAAAAT-AATT
1 ATAAAATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATT
* * * * *
33910 CTGTTTACCTAACTAGTTCAAAAAATTAT-ACTATTTGAACAATTATATATTTCAAATCATTATT
65 -TGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT-TATTTCAAATCATTATG
* * * * * * * *
33974 ACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGTTTATTTGGA
128 ACCTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
* * * * * *
34027 ATAAAGTAATACTAATCTATTAATATTTCAAAAATTAATAAGT----GATTTAGACAATAAATCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
* * * * * * *
34088 ATGTATCAAACTAGTTCCAATAGTTATGATTATTTGAGCAATTATTTATTTCAAATCATTATGAC
66 GTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTA-TTATTTCAAATCATTATGAC
* * ** * * * *
34153 TTTTTGTCTTGTTGTAAACCAATTGTTTCTATTCATACAAGCTTATTTGCA
130 CTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
* *** * * * *
34204 TTAAAATAATACTAATTTATTAATATTTTGACAATTAGTAAGTAA-AAATTTTTAAAAAT--A--
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAATT
* * * * * * * *
34264 TGTTTACCAGACTAGATCAAATAATCATGACAATTT---CAATAATTA--TCAAATCGTTATGAC
65 TGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATTATTTCAAATCATTATGAC
* * * * * * *
34324 CTTTTGATTTGTCATAAAAGAGTTGTTTCAGTTCATATAAACTTATTCAAA
130 CTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
* * *
34375 ATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAA-TAAAGAGATTTAAAAAATGACTT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGT-AAGAGATTTAAAAAATAAATT
* * * * * * * * *
34439 TGTTTACTAAACAAATTTAAATAATTAGGACTATTTGAATAATTATCTATTTGAAAT-AGCTATA
65 TGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT-TATTTCAAATCA-TTATG
* ** *
34503 ACCTTTTGTTTTGTAATAAAA-TTTTTTTTCTGTTCAT-CTAAGCTTATTTCG-A
128 ACCTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATAC-AAGCTTA-TTCGAA
* * *
34555 ATAAAGTAATACAAATTTATTAATATT--AAGACAATTAATAAGTAAAAGATTT-AAAAATAAAT
1 ATAAAATAATACTAATTTATTAATATTCCAA-A-AATTAATAAGTAAGAGATTTAAAAAATAAAT
* * * * *
34617 CTGTTTACCAAACAAGTTCTAATTA-TTATGGCTATTTGAGCAATTATTTATTTCAACAT-GTTA
64 TTGTTTACCAAACAAGTTC-AAATAGTTATGACTATTTGAACAATTA-TTATTTCAA-ATCATTA
** * * * *
34680 TGATTTTTTGTTTTTTCATAAAACAATTATTTCTGTTCAAACAAGTTTATTCGAA
126 TGACCTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
* * * *** * * *
34735 TTAAAATAATATTAATTAATTAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATAT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
* * * * * * * *
34800 ATTTACCAAACAAGTTCAAATAGTCATTAATACTTCAATAATTATCTATTTCAAATTATTATGAC
66 GTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTAT-TATTTCAAATCATTATGAC
* * * * ** * * * *
34865 CTTTTCTTTTCTAAT-AAACACTTGTTTCAATTCATATAAACTTGTTTGAA
130 CTTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
* * * * * *
34915 GTAAGATAATACTAATTTATTAATATTCCAAAAATTAATGAGTGAGAGAATTAAAAAA-AGAATA
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATA-AATT
* *
34979 TGTTTACCAAATAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAAACATTATGA
65 TGTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTA-TTATTTCAAATCATTATGA
* *
35044 CCTTTTGTTTTGTCATAAAACAATTGGCTT-TGTTCATGCAAGCTTATTTCG-A
129 CCTTTTGTTTTGTCATAAAACAATT-GTTTCTGTTCATACAAGCTTA-TTCGAA
*
35096 ATAAAATAAT-TTAAATTTATTAATATTCCAAAAATTAATAAGTAA-A-ATTTTAAAAAATAAAT
1 ATAAAATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAGAGA-TTTAAAAAATAAAT
* ** * * *
35158 ACATTG-GT-CTGAACACA-TTCAAATAGTTATGACTATTTGAAGAATTATCTATTTCAAACCGT
64 ---TTGTTTACCAAACA-AGTTCAAATAGTTATGACTATTTGAACAATTAT-TATTTCAAATCAT
* * * *
35220 TATGACCTTTTATTTTGTCATAAACCAATTGTTTCTGGTT-ATAAAAGCTTTTTCGAA
124 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-GTTCATACAAGCTTATTCGAA
* * *
35277 ATAACATATTACTAATTTATTAAAATTCCAAAAATTAATAAGTAA-AGATTTAAAAAATAAATTT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
* * * * * *
35341 GTTTATCGACCAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATCGTTATGAT
66 GTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTA-TTATTTCAAATCATTATGAC
*
35406 CTTTTGTTTTGTCATAAAACAATTTTTTCT
130 CTTTTGTTTTGTCATAAAACAATTGTTTCT
35436 ATTCGAGATA
Statistics
Matches: 1539, Mismatches: 323, Indels: 160
0.76 0.16 0.08
Matches are distributed among these distances:
170 1 0.00
171 95 0.06
172 3 0.00
173 6 0.00
174 5 0.00
175 64 0.04
176 147 0.10
177 147 0.10
178 52 0.03
179 191 0.12
180 492 0.32
181 320 0.21
182 14 0.01
183 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATTT
GTTTACCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATTATTTCAAATCATTATGACC
TTTTGTTTTGTCATAAAACAATTGTTTCTGTTCATACAAGCTTATTCGAA
Found at i:35134 original size:361 final size:357
Alignment explanation
Indices: 33316--35433 Score: 1636
Period size: 361 Copynumber: 5.9 Consensus size: 357
33306 ATGTTTTGTC
** * * * *
33316 ATAAAATAATTTTAATTTATTAATATTTCAAAAATTAATAAGT---A-ATTTAAAAAGTGAATCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
* * ** * * * * * * *
33377 ATTTGCGAAATTAGTTCAAATAATTATG-GTCATTTCAATAATCATCTATTTCAAATCGTTATCA
66 ATTTACTAAACAAGTTCAAATAGTTATGACT-ATTTGAACAATTATCTATTTCAAATCATTATGA
* * * * ** * * * ** *
33441 CCTTTTATTTGGTCATATAACAATTTTTTTTA-TCATACATGATTATTCCAAATAAAATAATAAT
130 CCTTTTCTTTTGTAATA-AACAATTGTTTCAATTCATATAAGCTTATTTGAAATAAAATAATACT
* * * *
33505 AATTTATTAATCTTTTAAAAATTAAT-A--AGAGATTTAAAAAATGAATTTGTTTATCGAACCAA
194 AATTTATTAATATTTTAAAAATTAATAAGTAGAGATTTAAAAAA-AAATATGTTTA-CCAACCAA
* * * *
33567 -TTCAAATAGTTATGACTATTTGAACAATCTA--TACTTCAAATTATTATAACCTTTTGTTATGT
257 GTTCAAATAGTTATGACTATTTGAACAAT-TATTTATTTCAAATCATTATGACCTTTTGTTTTGT
*
33629 CATAAAACAATTATTTCTGTTCATACAAGCTTATTCAAA
321 CATAAAACAATTATTT-TGTTCATACAAGCTTATTC-GA
* * * * ** *
33668 ATAAAACAATACTAATATAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAATAAATTT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
* ** * * * * * * * *
33733 GTTTGTTGAACCACTTTAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGTTATAAC
66 ATTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
* **
33798 CTTTATC--TTGTCATAAA-ACATT-TTCTCAATTCATACT-AGCTTATTCAAAATAAAATAA-A
131 CTTT-TCTTTTGTAATAAACA-ATTGTT-TCAATTCATA-TAAGCTTATTTGAAATAAAATAATA
* * * *
33857 ATAAATTTATTAATATTTTAAAAAATAATAAGTAAGAGATTTAAAAAATAATTCTGTTTACCTAA
192 CT-AATTTATTAATATTTTAAAAATTAATAAGT-AGAGATTTAAAAAA-AAATATGTTTACC-AA
* * * * * *
33922 -CTAGTTCAAAAAATTAT-ACTATTTGAACAATTATATATTTCAAATCATTATTACTTTTTGTTT
253 CCAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTGTTT
* * * *
33985 TGTCATACAACAAATGT-TTTTGTTCATATAAGTTTATTTGGA
318 TGTCATAAAAC-AAT-TATTTTGTTCATACAAGCTTA-TTCGA
* * * * * *
34027 ATAAAGTAATACTAATCTATTAATATTTCAAAAATTAATAAGT----GATTTAGACAATAAATCT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
* * * * * *
34088 ATGTA-TCAAACTAGTTCCAATAGTTATGATTATTTGAGCAATTATTTATTTCAAATCATTATGA
66 ATTTACT-AAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
* * * ** * * * *
34152 CTTTTTGTCTTGTTGTAAACCAATTGTTTCTATTCATACAAGCTTATTTGCATTAAAATAATACT
130 CCTTTTCTTTTGTAATAAA-CAATTGTTTCAATTCATATAAGCTTATTTGAAATAAAATAATACT
* * * * * ** *
34217 AATTTATTAATATTTTGACAATTAGTAAGTAAAAATTT--TTAAAAATATGTTTACCAGA-CTAG
194 AATTTATTAATATTTTAAAAATTAATAAGTAGAGATTTAAAAAAAAATATGTTTACCA-ACCAAG
* * * * * * *
34279 ATCAAATAATCATGACAATTT---CAA-TAATTA--TCAAATCGTTATGACCTTTTGATTTGTCA
258 TTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCA
* * * * * * *
34338 TAAAAGAGTTGTTTCAGTTCATATAAACTTATTCAAA
323 TAAAACAATTATTT-TGTTCATACAAGCTTATTC-GA
* * * *
34375 ATAAAATAATACTAATTTATTAATAATCCAAAAATTAATAA-TAAAGAGATTTAAAAAATGACTT
1 ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAA-AGATTTAAAAAATAAATA
* * * * * * * * *
34439 TGTTTACTAAACAAATTTAAATAATTAGGACTATTTGAATAATTATCTATTTGAAAT-AGCTATA
65 TATTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-TTATG
* * * ** * *
34503 ACCTTTTGTTTTGTAATAAA-ATTTTTTTTCTGTTCATCTAAGCTTATTTCG-AATAAAGTAATA
129 ACCTTTTCTTTTGTAATAAACA-ATTGTTTCAATTCATATAAGCTTATTT-GAAATAAAATAATA
* * * * *
34566 CAAATTTATTAATA--TTAAGACAATTAATAAGTAAAAGATTTAAAAATAAATCTGTTTACCAAA
192 CTAATTTATTAATATTTTAA-A-AATTAATAAGT-AGAGATTTAAAAAAAAATATGTTTACCAAC
* * * * **
34629 CAAGTTCTAATTA-TTATGGCTATTTGAGCAATTATTTATTTCAACAT-GTTATGATTTTTTGTT
254 CAAGTTC-AAATAGTTATGACTATTTGAACAATTATTTATTTCAA-ATCATTATGACCTTTTGTT
* * *
34692 TTTTCATAAAACAATTATTTCTGTTCAAACAAGTTTATTCGA
317 TTGTCATAAAACAATTATTT-TGTTCATACAAGCTTATTCGA
* * *** *
34734 ATTAAAATAATATTAATTAATTAATATTTTGACAATTAATAAGTAAAAGATTTAAAAAATAAATA
1 A-TAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATA
* * * * * * * *
34799 TATTTACCAAACAAGTTCAAATAGTCATTAATACTTCAATAATTATCTATTTCAAATTATTATGA
65 TATTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGA
* * * * * *
34864 CCTTTTCTTTTCTAATAAACACTTGTTTCAATTCATATAAACTTGTTTGAAGTAAGATAATACTA
130 CCTTTTCTTTTGTAATAAACAATTGTTTCAATTCATATAAGCTTATTTGAAATAAAATAATACTA
** * * **
34929 ATTTATTAATATTCCAAAAATTAATGAGTGAGAGAATTAAAAAAAGAATATGTTTACCAAATAAG
195 ATTTATTAATATTTTAAAAATTAATAAGT-AGAGATTTAAAAAAA-AATATGTTTACCAACCAAG
*
34994 TTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAAACATTATGACCTTTTGTTTTGTCA
258 TTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCA
** *
35059 TAAAACAATTGGCTTTGTTCATGCAAGCTTATTTCGA
323 TAAAACAATT-ATTTTGTTCATACAAGCTTA-TTCGA
* *
35096 ATAAAATAAT-TTAAATTTATTAATATTCCAAAAATTAATAAGTAAAA-TTTTAAAAAATAAATA
1 ATAAAATAATACT-AATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATA
* * * * *
35159 CATTGGT-CTGAACACA-TTCAAATAGTTATGACTATTTGAAGAATTATCTATTTCAAACCGTTA
65 TATT--TACTAAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTA
* * ** * *
35222 TGACCTTTTATTTTGTCATAAACCAATTGTTTCTGGTT-ATAAAAGCTT-TTTCGAAATAACATA
127 TGACCTTTTCTTTTGTAATAAA-CAATTGTTTC-AATTCATATAAGCTTATTT-GAAATAAAATA
* * ** * * * *
35285 TTACTAATTTATTAAAATTCCAAAAATTAATAAGTAAAGATTTAAAAAATAAATTTGTTTATCGA
189 ATACTAATTTATTAATATTTTAAAAATTAATAAGTAGAGATTTAAAAAA-AAATATGTTTACCAA
* * *
35350 CCAAGTTCAAATAGTTATGACTATTTGAATAATTATTTATTTCAAATCGTTATGATCTTTTGTTT
253 CCAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTGTTT
35415 TGTCATAAAACAATT-TTTT
318 TGTCATAAAACAATTATTTT
35434 CTATTCGAGA
Statistics
Matches: 1405, Mismatches: 283, Indels: 149
0.76 0.15 0.08
Matches are distributed among these distances:
346 1 0.00
347 8 0.01
348 80 0.06
349 3 0.00
350 5 0.00
351 59 0.04
352 118 0.08
353 31 0.02
354 48 0.03
355 124 0.09
356 80 0.06
357 62 0.04
358 27 0.02
359 127 0.09
360 259 0.18
361 300 0.21
362 71 0.05
363 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (357 bp):
ATAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAATAT
ATTTACTAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGAC
CTTTTCTTTTGTAATAAACAATTGTTTCAATTCATATAAGCTTATTTGAAATAAAATAATACTAA
TTTATTAATATTTTAAAAATTAATAAGTAGAGATTTAAAAAAAAATATGTTTACCAACCAAGTTC
AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGACCTTTTGTTTTGTCATAA
AACAATTATTTTGTTCATACAAGCTTATTCGA
Found at i:35723 original size:19 final size:19
Alignment explanation
Indices: 35699--35737 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
35689 TAAGAATCAT
*
35699 TAATTAATAAT-TGTATTAA
1 TAATTAACAATAT-TATTAA
35718 TAATTAACAATATTATTAA
1 TAATTAACAATATTATTAA
35737 T
1 T
35738 GGCCATTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (19 bp):
TAATTAACAATATTATTAA
Found at i:35765 original size:9 final size:9
Alignment explanation
Indices: 35751--35788 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
35741 CATTGAATAA
35751 ATTATTAAT
1 ATTATTAAT
35760 ATTATTAAT
1 ATTATTAAT
*
35769 AATATT-AT
1 ATTATTAAT
35777 ATTA-TAAT
1 ATTATTAAT
35785 ATTA
1 ATTA
35789 ATATATTTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
7 1 0.04
8 11 0.42
9 14 0.54
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
ATTATTAAT
Found at i:36397 original size:21 final size:20
Alignment explanation
Indices: 36360--36399 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
36350 GCTTGTATTA
36360 ATATTTAATTATCTATTAAT
1 ATATTTAATTATCTATTAAT
36380 ATATTATAATTGAT-TATTAA
1 ATATT-TAATT-ATCTATTAA
36400 AATTAACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 11 0.61
22 2 0.11
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (20 bp):
ATATTTAATTATCTATTAAT
Found at i:36544 original size:11 final size:10
Alignment explanation
Indices: 36519--36548 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
36509 TTATATAGTA
36519 AATAATATTT
1 AATAATATTT
36529 AATAATATTAT
1 AATAATATT-T
36540 AATAATATT
1 AATAATATT
36549 GAGTTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
AATAATATTT
Found at i:37836 original size:182 final size:182
Alignment explanation
Indices: 37321--39143 Score: 463
Period size: 181 Copynumber: 10.2 Consensus size: 182
37311 CCTTGTAATT
* * * * * * * *
37321 CAAAAACAAGTGTTTTGTGACAAAATAAAAG-GTCATAATGATTTAAAATAGATAATTGTTCAAA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGACTTGAAATAGATAATTATTCAAA
* * * * *** *
37385 TAGTCATAACTATTTGCAA-T-GGTCAGGCCAACGGATTTATTTTTT-AAAT-TCGTTACTTATT
65 TAGCCATAACTATTTG-AACTAGTTCA-ACAAATAAATTT-TTTTTTCAAATCTC-TTAATTATT
* * * * ** * * * *
37446 AATTGTT-AGAATATTAATATATTAGCATTA-CTTTATTCCGAATAAGACTATATCAA
126 AATT-TTCAAAATATTAATAAATTAACATTATTTTTATTCTAAACAAAATTATATGAA
* * * * * * ** * * *
37502 TAGAAATAATTGTTTTATTACAAAACAAAGGGTTATAA-CAATATGAAATAAATAATTATT-AAA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAATATAATGACT-TGAAATAGATAATTATTCAAA
* ** * **** *
37565 TTGTTATAACTAATTGAACTAGTTTGGTAAACAAATTTATTTTTT-AAATCTC----TTATTAAT
65 TAGCCATAACTATTTGAACTAGTTCAACAAATAAATTT-TTTTTTCAAATCTCTTAATTATTAAT
* *
37625 TTTCAAAATATTAATAAATTAATATTA-TTTTATTCTAAACAAAATTATATTAA
129 TTTCAAAATATTAATAAATTAACATTATTTTTATTCTAAACAAAATTATATGAA
* * *
37678 CAAAAACATTTATTTTATGACAAAACAAAAAGAATATAATGATTTGAAATAGATAATTATTCATA
1 CAAAAACAATTATTTTATGACAAAAC-AAAAGAATATAATGACTTGAAATAGATAATTATTCAAA
*
37743 TAGCCTTAACTATTTGAACTAGTTCAACAAATAAATTTTTTTTTCAAATCTCTTAATTATTAATT
65 TAGCCATAACTATTTGAACTAGTTCAACAAATAAATTTTTTTTTCAAATCTCTTAATTATTAATT
* * * * * * * * **
37808 TTCATAATATTATTAGATTAGCATTATTTTTTTTTTTGAATAAGCTTATATGAA
130 TTCAAAATATTAATAAATTAACATTA-TTTTTATTCTAAACAAAATTATATGAA
* * * ** * *
37862 CATAAATAATTGTTTTATGACAAAACAAAAGGTTATAATGACTTGAAATATATAATTATTTAAAT
1 CAAAAACAATTATTTTATGACAAAACAAAAGAATATAATGACTTGAAATAGATAATTATTCAAAT
* * * ** * * * *
37927 AGTCATAATTATTTGAATTAGTTCAGTAAACAGA--------T--AATCTCCTACTTATTAATTT
66 AGCCATAACTATTTGAACTAGTTCAACAAATAAATTTTTTTTTCAAATCTCTTAATTATTAATTT
** * * ** *** * * *
37982 TTGAAATATTAATAAA-CAAGTATTA-TTTTATTCTAATTAGTCTTGTACGAT
131 TCAAAATATTAATAAATTAA-CATTATTTTTATTCTAAACAAAATTATATGAA
* * * * * * *
38033 GAAAAACAATTGTTTTATGACAAAACAAAAG-TTCAAAATGATTTGAAATAAATAATTGTTCAAA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGACTTGAAATAGATAATTATTCAAA
* * * * * * ** *
38097 TGGCCATAACTATTTGAAC-CGATTCGATA-AAAT-GATTTATGTTTAAAATC-CCCAACTTCTT
65 TAGCCATAACTATTTGAACTAG-TTC-A-ACAAATAAATTTTTTTTTCAAATCTCTTAA-TTATT
* ** * * * * ** * ** *
38158 ATTTTTTGAAATATTGATAAAGTAATATTA-TTTTATTTTGGATAAGCTTTTATGAA
126 AATTTTCAAAATATTAATAAATTAACATTATTTTTATTCTAAACAAAATTATATGAA
* * * * ** * *
38214 -ATGAAACAATTGTTTTATGATAAAACAAAAG-GTCATAACAATCTTAAAAT-GATAATTATTTA
1 CA-AAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGA-CTTGAAATAGATAATTATTCA
* * * **** * * * **
38276 AATAGTCATAACTATTTAAACTTGTTTGGTAAACAAAATTATTTTTT-AATTC-CTTGCTTATTA
63 AATAGCCATAACTATTTGAACTAGTTCAACAAA-TAAATTTTTTTTTCAAATCTCTTAATTATTA
* * * * * * *
38339 ATTTT-ATGAATGTTAATAAAATAGCATTA-TTTTATTTCGAATA-AACA-TGTATGAA
127 ATTTTCA-AAATATTAATAAATTAACATTATTTTTA-TTCTAA-ACAAAATTATATGAA
*** * ** * * *
38394 -TTGAACAATTATTTTATGACTAAAC-AAAGGGTCAGAATGAGTTAAAATAGATAATTATT-ATA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGACTTGAAATAGATAATTATTCA-A
* * * *
38456 ATAGTCTTAACTATTTGAACTAGTTCAACAAATACATTTATTTTTT-AAATCTCTTACTTATTAA
64 ATAGCCATAACTATTTGAACTAGTTCAACAAATAAATTT-TTTTTTCAAATCTCTTAATTATTAA
* * ** ** * * * * ** * *
38520 TTTTTAGAATATTTTTAGTTTAGCAATA-TTTTACTCCT-AATAAGTTTGTATGGA
128 TTTTCAAAATATTAATAAATTAACATTATTTTTA-TTCTAAACAAAATTATATGAA
* ** *
38574 CAGAAACAATTATTTTATGACAAAAC-AAAG-ATCATACCGA-TTTAAGATAGATAATTATTCAA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGACTTGAA-ATAGATAATTATTCAA
** * * * * * * * **
38636 ATAATCATAACAATTTGAATTGGTTCCATAAACAGATATAGTTTTT-AAATCTC----TTATTAA
64 ATAGCCATAACTATTTGAACTAGTTCAACAAATAAAT-TTTTTTTTCAAATCTCTTAATTATTAA
** * * ** *
38696 TTTTCAAAATATTAATAAATTAGTATTA-TTTTATTTTGAACAATTTTGTATGAA
128 TTTTCAAAATATTAATAAATTAACATTATTTTTATTCTAAACAAAATTATATGAA
* * * * * * * * * * * *
38750 TAGAAACAATTGTTTTATTACAAAA-TAAAGGATCATACTGATTTGAAATAAAAAAAATATTTAA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGACTTGAAAT-AGATAATTATTCAA
* * * *** * * * *
38814 ATAGTCATAATTATTTGAACTCA-CTCGGTAAACAAATTTATTTTTT-AAATATTTTACTTATTA
64 ATAGCCATAACTATTTGAACT-AGTTCAACAAATAAATTT-TTTTTTCAAATCTCTTAATTATTA
** * * ** * * ** *
38877 ATTTTTGAATTTTTAATAAATTAGTATTA-TTTTATT-TCGAATAAGCTTTTATGAA
127 ATTTTCAAAATATTAATAAATTAACATTATTTTTATTCT-AAACAAAATTATATGAA
* * ** * * * *
38932 TAGAAACAATTGGTTTATGACAAAACAAAAG-GTCAAAATGATTTGAAATAGATAATTGTTCAAA
1 CAAAAACAATTATTTTATGACAAAACAAAAGAAT-ATAATGACTTGAAATAGATAATTATTCAAA
* * * * * * * * * * *
38996 TGGTCATGATTATTTTGAAC-ATGTTCAAAAAACAAATATATTTTAT-ATAT-TTTTACTTATTA
65 TAGCCATAACTA-TTTGAACTA-GTTCAACAAATAAAT-TTTTTTTTCAAATCTCTTAATTATTA
** * * * * ** *
39058 ATCTTT-GGAATATTAGTAAATTTATATTA-TTTTATT-TGAAATAAGCTTGTATGAA
127 AT-TTTCAAAATATTAATAAATTAACATTATTTTTATTCT-AAACAAAATTATATGAA
* * *
39113 CAAAAATAATTGTTTTATGGCAAAACAAAAG
1 CAAAAACAATTATTTTATGACAAAACAAAAG
39144 GTCATAACTA
Statistics
Matches: 1257, Mismatches: 313, Indels: 144
0.73 0.18 0.08
Matches are distributed among these distances:
170 3 0.00
171 90 0.07
172 5 0.00
173 33 0.03
175 5 0.00
176 138 0.11
177 43 0.03
178 107 0.09
179 82 0.07
180 187 0.15
181 294 0.23
182 165 0.13
183 64 0.05
184 41 0.03
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (182 bp):
CAAAAACAATTATTTTATGACAAAACAAAAGAATATAATGACTTGAAATAGATAATTATTCAAAT
AGCCATAACTATTTGAACTAGTTCAACAAATAAATTTTTTTTTCAAATCTCTTAATTATTAATTT
TCAAAATATTAATAAATTAACATTATTTTTATTCTAAACAAAATTATATGAA
Found at i:38421 original size:179 final size:178
Alignment explanation
Indices: 37969--39156 Score: 855
Period size: 181 Copynumber: 6.6 Consensus size: 178
37959 GATAATCTCC
** * * * *
37969 TACTTATTAATTTTTGAAATATTAATAAACAAGTATTATTTTA-TTCTAATTAGTCTTGTACG-A
1 TACTTATTAATTTTTG-AATATTAATAAATTAGCATTATTTTATTTCGAATAAG-CTTGTATGAA
* * * * * * * *
38032 TGAAAAACAATTGTTTTATGACAAAACAAAAGTTCAAAATGATTTGAAATAAATAATTGTTCAAA
64 T-AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTTAAA
* * * * * * * *
38097 TGGCCATAACTATTTGAAC-CGATTCGATAAA-ATGATTTATGTTTAAAATCCCC
128 TAGTCATAACTATTTGAACTTG-TTCGATAAACA-AAATTATTTTTTAAAT--CT
* * * * * ** * * *
38150 AACTTCTTATTTTTTGAAATATTGATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAA-
1 TACTTATTAATTTTTG-AATATTAATAAATTAGCATTATTTTATTTCGAATAAGCTTGTATGAAT
* *
38214 ATGAAACAATTGTTTTATGATAAAACAAAAGGTCATAACAATCTTAAAAT-GATAATTATTTAAA
65 A-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGAT-TTAAAATAGATAATTATTTAAA
* * * *
38278 TAGTCATAACTATTTAAACTTGTTTGGTAAACAAAATTATTTTTTAATTCCT
128 TAGTCATAACTATTTGAACTTGTTCGATAAACAAAATTATTTTTTAAAT-CT
* * * * *
38330 TGCTTATTAATTTTATGAATGTTAATAAAATAGCATTATTTTATTTCGAATAAACATGTATGAAT
1 TACTTATTAATTTT-TGAATATTAATAAATTAGCATTATTTTATTTCGAATAAGCTTGTATGAAT
* * * * * * *
38395 TG-AACAATTATTTTATGACTAAACAAAGGGTCAGAATGAGTTAAAATAGATAATTA-TTATAAT
65 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTTA-AAT
* * * * * * *
38458 AGTCTTAACTATTTGAACTAGTTCAACAAATACATTTATTTTTTAAATCTCT
129 AGTCATAACTATTTGAACTTGTTCGATAAACAAAATTATTTTTTAAA--TCT
** ** * * * * * * *
38510 TACTTATTAATTTTTAGAATATTTTTAGTTTAGCAATATTTTACTCCTAATAAGTTTGTATGGAC
1 TACTTATTAATTTTT-GAATATTAATAAATTAGCATTATTTTATTTCGAATAAGCTTGTATGAAT
* * * * *
38575 AGAAACAATTATTTTATGACAAAAC-AAAGATCATACCGATTTAAGATAGATAATTATTCAAATA
65 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTTAAATA
* * * * *
38639 ATCATAACAATTTGAA-TTGGTTCCATAAAC-AGATATAGTTTTTAAATC-
130 GTCATAACTATTTGAACTT-GTTCGATAAACAAAAT-TATTTTTTAAATCT
** * * * **
38687 T-CTTATTAATTTTCAAAATATTAATAAATTAGTATTATTTTATTTTGAACAATTTTGTATGAAT
1 TACTTATTAATTTT-TGAATATTAATAAATTAGCATTATTTTATTTCGAATAAGCTTGTATGAAT
* * * * * *
38751 AGAAACAATTGTTTTATTACAAAA-TAAAGGATCAT-ACTGATTTGAAATAAAAAAAATATTTAA
65 AGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAAC-GATTTAAAAT-AGATAATTATTTAA
* *** * * *
38814 ATAGTCATAATTATTTGAACTCACTCGGTAAACAAATTTATTTTTTAAATATTT
127 ATAGTCATAACTATTTGAACTTGTTCGATAAACAAAATTATTTTTT-AA-ATCT
* * *
38868 TACTTATTAATTTTTGAATTTTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAAT
1 TACTTATTAATTTTTGAA-TATTAATAAATTAGCATTATTTTATTTCGAATAAGCTTGTATGAAT
* * * * * * *
38933 AGAAACAATTGGTTTATGACAAAACAAAAGGTCAAAATGATTTGAAATAGATAATTGTTCAAATG
65 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTTAAATA
* * * * * * * *
38998 GTCATGATTATTTTGAACATGTTCAAAAAAC-AAATATATTTTATATATTTT
130 GTCATAACTA-TTTGAACTTGTTCGATAAACAAAAT-TATTTTTTA-AATCT
* * *
39049 TACTTATTAATCTTTGGAATATTAGTAAATTTA-TATTATTTTATTT-GAAATAAGCTTGTATGA
1 TACTTATTAAT-TTTTGAATATTAATAAA-TTAGCATTATTTTATTTCG-AATAAGCTTGTATGA
* * * * *
39112 ACAAAAATAATTGTTTTATGGCAAAACAAAAGGTCATAACTATTT
63 ATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTT
39157 GAACTTATTT
Statistics
Matches: 784, Mismatches: 186, Indels: 74
0.75 0.18 0.07
Matches are distributed among these distances:
176 73 0.09
177 13 0.02
178 52 0.07
179 85 0.11
180 163 0.21
181 260 0.33
182 132 0.17
183 6 0.01
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.41
Consensus pattern (178 bp):
TACTTATTAATTTTTGAATATTAATAAATTAGCATTATTTTATTTCGAATAAGCTTGTATGAATA
GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTTAAATAG
TCATAACTATTTGAACTTGTTCGATAAACAAAATTATTTTTTAAATCT
Found at i:39384 original size:325 final size:327
Alignment explanation
Indices: 38817--39485 Score: 823
Period size: 325 Copynumber: 2.0 Consensus size: 327
38807 TATTTAAATA
* * *
38817 GTCATAATTATTTGAACTCACTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTT
1 GTCATAA-TATTTGAACTCACTCGGTAAACAAATTCATTTTTTAAATATCTTACTCATTAATTTT
* ** * *
38882 TGAATTTTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGGTT
65 GGAATTAGTAATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGGTT
* * * *
38947 TATGACAAAACAAAAGGTCAAAATGATTTGAAATAGATAATTGTTCAAATGGTCATGATTATTTT
130 TATGACAAAACAAAAGGCCAAAATGATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTT
* * *
39012 GAACATGTTCAAAAAACAAATATATTTTATATATTTTTACTTATTAATCT-TTGGAATATTAGTA
195 GAACATGTTCAAAAAACAAATATATTTTATAAATTTTTACTTATTAAT-TGTTGAAATATTAATA
* ** * *
39076 AATTTATATTATTTT-ATTTGAAATAAGCTTGTATG-AACAAAAATAATTGTTTTATGGCAAAAC
259 AATTAATATTATTTTAATTTG-AATAAGCTAATATGAAAAAAAAATAATTGTTTTATGACAAAAC
39139 AAAAG
323 AAAAG
* * * * * *
39144 GTCATAACTATTTGAACTTATTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAATTTC
1 GTCATAA-TATTTGAACTCACTCGGTAAACAAATTCATTTTTTAAATATCTTACTCATTAATTT-
* * * * *
39209 TGGAA-TAGTAATAAGTTAGTATTATTTTA-TTCGAATAAGCCTATATGAATTGATATAATT-TT
64 TGGAATTAGTAATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGGT
* * * * *
39271 TTATGGCGAAACAAAAGGCCATAATGATTTGAAATAGATAATTATTCAGATAGTTATTG-CTATT
129 TTATGACAAAACAAAAGGCCAAAATGATTTGAAATAGATAATTATTCAAATAGTCA-TGACTATT
* ** * * *
39335 TT-AACTTGTTCAGTAAACATATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAA
193 TTGAACATGTTCAAAAAACAAATATATTTTATAAAT-TTTTACTTATTAATTGTTGAAATATTAA
*
39399 TAAATTAATATTATTTTAATTTGAATAAGCTAATATGAAAAAAAAATTATTGTTTTATGACAAAA
257 TAAATTAATATTATTTTAATTTGAATAAGCTAATATGAAAAAAAAATAATTGTTTTATGACAAAA
39464 CAAAAG
322 CAAAAG
39470 GTCATAATGATTTGAA
1 GTCATAAT-ATTTGAA
39486 ATAAATAATT
Statistics
Matches: 291, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
324 27 0.09
325 108 0.37
326 77 0.26
327 75 0.26
328 4 0.01
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (327 bp):
GTCATAATATTTGAACTCACTCGGTAAACAAATTCATTTTTTAAATATCTTACTCATTAATTTTG
GAATTAGTAATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGGTTT
ATGACAAAACAAAAGGCCAAAATGATTTGAAATAGATAATTATTCAAATAGTCATGACTATTTTG
AACATGTTCAAAAAACAAATATATTTTATAAATTTTTACTTATTAATTGTTGAAATATTAATAAA
TTAATATTATTTTAATTTGAATAAGCTAATATGAAAAAAAAATAATTGTTTTATGACAAAACAAA
AG
Found at i:39863 original size:181 final size:180
Alignment explanation
Indices: 39542--39887 Score: 403
Period size: 181 Copynumber: 1.9 Consensus size: 180
39532 ACAGATTTGA
* * * * *
39542 AATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAATACAAAAGGTTATAGCAATTTGAACT
1 AATAAGCTTGTATGAACAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAAT
* * * * * * *
39607 AGATAATTGGTCAAATAGCCATAATTATTTGAACTTATTTGGTAATCAGATTCATTTTTTAAATC
66 AGAGAATTGGTCAAATAGCCATAATTATTTGAACTTAGTCGGCAATAAGATACATTTTCTAAATC
* *
39672 TCTCACTTATTAAATTTTGAAATATTAATAAATTAGAATTATGTTATTCTT
131 TCTCACTTATT-AATTTTCAAAAATTAATAAATTAGAATTATGTTATTCTT
* * * *
39723 AATAAGCTTGTATGAACA-AAAACAATTGTTTTGTGAGAAAACAAAAGGTCATAACGATTTGAAA
1 AATAAGCTTGTATGAACAGAAAA-AATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAA
** * * *
39787 TAGAGAATTTTTCAAATAGTCATAATTGTTTGCAC-TAGTCGAGCCAA-AAGATACATTTTCTAA
65 TAGAGAATTGGTCAAATAGCCATAATTATTTGAACTTAGTCG-G-CAATAAGATACATTTTCTAA
*
39850 ATC-CATTACTTATTAATTTTCAAAAATTAATAAATTAG
128 ATCTC-TCACTTATTAATTTTCAAAAATTAATAAATTAG
39888 CTTTTTAGTA
Statistics
Matches: 137, Mismatches: 24, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
180 31 0.23
181 104 0.76
182 2 0.01
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (180 bp):
AATAAGCTTGTATGAACAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACAATTTGAAAT
AGAGAATTGGTCAAATAGCCATAATTATTTGAACTTAGTCGGCAATAAGATACATTTTCTAAATC
TCTCACTTATTAATTTTCAAAAATTAATAAATTAGAATTATGTTATTCTT
Found at i:40487 original size:179 final size:178
Alignment explanation
Indices: 39896--42539 Score: 1471
Period size: 181 Copynumber: 14.6 Consensus size: 178
39886 AGCTTTTTAG
* * * * *
39896 TATGACTTTTTATTTTGTAATAAAATAATTGTTTCTATTCATACAAGCTTA-TTCGGATTAAAAT
1 TATGAC-TTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-AAATAAAAT
** * * * * * *
39960 AATATTAATTTATTAATATTTTGATAATTAACAAGTAAAAGATTTAAAAAATAAATATGTTTACC
64 AATA-TAATTTATTAATATTTCAAAAATTAATAAATAAAA-ATTTTAAAAATAAATCTGTTTACT
* * * * *
40025 AAACAAGTTCAAATAGTCAAGACTATTTAAATAATTATCTATTTCAAAT-AGT
127 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA-T
* * * * * * * * *
40077 TGTGACCTTCTATTTTGTAATAAAATAATTGTTTC-AGTTAACATAAGCTTATTTGAAATAAAAT
1 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTCAAATAAAAT
* * ** * * ** **
40141 AGCTCTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAACGAATCTGTTTA-
64 A-ATATAATTTATTAATATTTCAAAAATTAATAAATAA-A-AATTTTAAAAATAAATCTGTTTAC
* * * *
40205 TCGAACAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATTTCAAAACAT
126 T-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * *
40259 TATGACCATTTGTTTTATCATAAAATAATTAGTTT-TGTTCATGCAAGCTTATGTCAAATAAAAT
1 TATGA-CTTTTGTTTTGTCATAAAACAATT-GTTTCTATTCATACAAGCTTATTTCAAATAAAAT
* * * * **
40323 AATATAAATTTATTAAAACTCCAAAAATTAATAAATAAAAATTTTAAAAATAAATATGTTTTTTG
64 AATAT-AATTTATTAATATTTCAAAAATTAATAAATAAAAATTTTAAAAATAAATCTGTTTACTG
40388 AACACA-TTC-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
128 AACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * **
40438 TATAACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTAGAAATAAAATA
1 TATGAC-TTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATA
* * * *
40503 ATATTAATTTATTAATATTTCTAAAATTAATAAGTAAAAGA-TTTAAATAATAAATTTGTTTACC
65 ATA-TAATTTATTAATATTTCAAAAATTAATAAATAAAA-ATTTTAAA-AATAAATCTGTTTACT
* * * * * *
40567 GAGCAAGTTTAAATAGTTATTACTATTTGGACAATTATATATTTCAAATCTT
127 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * **
40619 TATGATTTTTTTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAATAAAATAA
1 TATGACTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAA
* * * * * * **
40684 TACTAATTTATTATTA-TTCTAAAATTTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTACCA
66 TA-TAATTTATTAATATTTC-AAAAATTAATAA-ATAAAAATTTTAAAAATAAATCTGTTTACTG
* * * * * *** * **
40748 AATAAGTTTAAATAGTCATGTCCATTTGAATTGTTATTTATTTCAAATGGT
128 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * **
40799 TATGACATTTTGTTTTATTATAAAATAATTGTTTCTATTCACACAAAATTA-TTCAGAATAAAAT
1 TATGAC-TTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCA-AATAAAAT
* ** ** * * * *
40863 AATATCAATTTATTACTATTTTGAAAA-T--T-AATAAGGATTTAAAAAAAAAATGTGTTTTCTG
64 AATAT-AATTTATTAATATTTCAAAAATTAATAAATAAAAATTTTAAAAATAAATCTGTTTACTG
* * *
40924 AA-ACAGTTCAAATAGTTAAGACTATTAGAACAATTATCTA-TTCAAATTAT
128 AACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * * * * *
40974 TCTGATCTTTTGTTTAGTCAAAAAATAATTGTTTC-AGTTCATGCATGCTTATTTAAAATATAGT
1 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTCAAATAAAAT
* * *
41038 AATACTAATTTATTAAAATTT-AGAAAATTAAT--A-AGAAATTTTAAAAA-AAATCTATTTACT
64 AATA-TAATTTATTAATATTTCA-AAAATTAATAAATAAAAATTTTAAAAATAAATCTGTTTACT
* * * **
41098 GAATAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCGC
127 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * * *
41150 TATGACCTTTTATTTTATCATAAAACAACTATTTCAATACATAAAAG-TT-TTTCAAAATAAAAT
1 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-AAATAAAAT
** * * * *** * *
41213 AATATTGCTTTATGAATATTTCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCAGTTTA-T
64 AATA-TAATTTATTAATATTTCAAAAATTAATAAATAAAAATTTT-AAAAATAAATCTGTTTACT
* * * *
41277 CAA-ATTA-TTCAAATAATTATGCCTATTTGAATAATTATCTATTTCAAATCAT
127 GAACA--AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * **
41329 TATGAACTTTTGTTTTGCCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAAAT
1 TATG-ACTTTTGTTTTGTCATAAAACAATTGTTTCT-ATTCATACAAGCTTATTTCAAATAAAAT
* * * * * *
41393 AATACCAATTTACTAAT-TTTCAAAAATTAAT--A-AAAGA-TTTAAAAAGTTAATCTATTTATT
64 AATA-TAATTTATTAATATTTCAAAAATTAATAAATAAAAATTTTAAAAA-TAAATCTGTTTACT
* * * * * **
41453 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATGTATATGAAATTGT
127 GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * *
41505 TATAACCTTTTGTTATCTCATAAAACAATTATTTCTATTCAGACAAGTTTA-TTCAAAATAAAAT
1 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-AAATAAAAT
* * * * * * *
41569 AATACTAATATAATAATA-TTCTACAAATTAATAACTAAGAGA-TTTAAAACATAAATTTATTTA
64 AATA-TAATTTATTAATATTTC-AAAAATTAATAAATAA-AAATTTTAAAA-ATAAATCTGTTTA
* * * * * * *
41632 CTGAACTAGTTCAAATATTTAAGGCTATATGAACAATTCTTTATTTCAAATCAT
125 CTGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * **
41686 TATGACCTTTTGTTTTGT-AGTAAAATAATT-TTTTTCATTTCTTAGTAA-CTTATTTGGAATAA
1 TATGA-CTTTTGTTTTGTCA-TAAAACAATTGTTTCT-A-TTCATA-CAAGCTTATTTCAAATAA
* * * * * ** * * * * *
41748 AGTAAAACAAATTTATTAATATTTCAAAACTTACTAAGCAAGAGATTTAAAAAACAATTCAGTTT
61 AATAATA-TAATTTATTAATATTTCAAAAATTAATAAATAA-AAATTTTAAAAATAAATCTGTTT
* * * * *
41813 GCCT-AACCAA-TTCAAATAATTAGGTCTATTTGAACAATTATCTATTTCGAATCAT
124 -ACTGAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * * * *
41868 TATGTTCTTTTATTTTGTCATAAAACAAATGTTTTTGTACATATAAG-TT-TGTTCGGAATAAAA
1 TATG-ACTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTAT-TTC-AAATAAAA
* ** * * * *
41931 CAATATTAATTTATTAATATTTTGAAAATT-A-AGA-AGAAA-TTTAAAAAGTAAAACTATTTAC
63 TAATA-TAATTTATTAATATTTCAAAAATTAATAAATAAAAATTTTAAAAA-TAAATCTGTTTAC
* * * * * *
41992 TAAACTAGTTCAATTAGTTATAACTATTTAAACAATTATTTATTTCAAATCAT
126 TGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * * * *
42045 TATGACTATTTGTATTGTCATAAAATAATTATTTATGTTCATAC-AGTCTTATTCCAAATAAAGT
1 TATGACT-TTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAG-CTTATTTCAAATAAAAT
** * * * * ** **
42109 AATACTAATTTATTAATATTT-TGAAATTAATAAGTAATAGATTTAAAAAATGAATCAATTGGCC
64 AATA-TAATTTATTAATATTTCAAAAATTAATAAATAA-AAATTTTAAAAATAAATCTGTT-TAC
* * ** * * * *
42173 T-TACTAGAGCAAATAGTTATGACTGTTTAAATAATTATCTATTTCTAATCAT
126 TGAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
* * * * *
42225 TATAACCTTTTGTTTTATCACAAAATAATTGTTTC-A-TCATAAAACAATTGTTTCTATCTGTAC
1 TATGA-CTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT---ACAA--G-CT-TAT-T-T-C
* * * * * * *
42288 TAGCTTATTTGAAAGAATATAATTCTATTTTATTAATATTCTAAAAATTAAT--A-AGAGATTTA
55 -A----A-ATAAAATAATATAATT-TA--TTAAT-AT-TTC-AAAAATTAATAAATAAAAATTTT
* * * *
42350 AAAAATGAATCTGTTTA-TCGAACAAGTACAAATAATTATGACTATTTGAATAATTATCTATTTC
108 AAAAATAAATCTGTTTACT-GAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* **
42414 TAATCGC
172 AAATCAT
* * *
42421 TATAACCTTTTGTTTTGTCCTAAAACAAAAT-TTTCTATTCATACAAGCTTATTTCAAATAAAAT
1 TATGA-CTTTTGTTTTGTCATAAAAC-AATTGTTTCTATTCATACAAGCTTATTTCAAATAAAAT
* * * * *
42485 TATATAAATTTTATTAATATTT-AGACAACTAATAAGTAAAAGATTTAAAAAATAA
64 AATAT-AA-TTTATTAATATTTCA-AAAATTAATAAATAAAA-ATTTTAAAAATAA
42540 TAAGTTTAAA
Statistics
Matches: 1897, Mismatches: 436, Indels: 259
0.73 0.17 0.10
Matches are distributed among these distances:
174 9 0.00
175 169 0.09
176 230 0.12
177 119 0.06
178 30 0.02
179 227 0.12
180 309 0.16
181 339 0.18
182 278 0.15
183 34 0.02
184 5 0.00
185 3 0.00
186 1 0.00
187 1 0.00
188 2 0.00
189 2 0.00
190 1 0.00
191 3 0.00
192 1 0.00
193 7 0.00
194 10 0.01
195 4 0.00
196 92 0.05
197 7 0.00
198 6 0.00
200 8 0.00
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (178 bp):
TATGACTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATAAAATAA
TATAATTTATTAATATTTCAAAAATTAATAAATAAAAATTTTAAAAATAAATCTGTTTACTGAAC
AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
Found at i:41320 original size:16 final size:17
Alignment explanation
Indices: 41288--41320 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
41278 AAATTATTCA
41288 AATAATTATGCCTATTTG
1 AATAATTAT-CCTATTTG
41306 AATAATTAT-CTATTT
1 AATAATTATCCTATTT
41321 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATCCTATTTG
Found at i:41529 original size:176 final size:180
Alignment explanation
Indices: 40207--42238 Score: 667
Period size: 180 Copynumber: 11.4 Consensus size: 180
40197 TCTGTTTATC
* * * * * * * * *
40207 GAACAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATTTCAAAACATTATGACCATTTGT
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTGT
* ** * * * ** *
40272 TTTATCATAAAATAATTAGTTT-TGTTCATG-CAAGCTTATGTC-AAATAAAATAATATAAATTT
66 TATGCCATAAAACAATTA-TTTCTATTCA-GACAAGCCTAT-TCAAAATAAAATAATACCAATAT
* * * * * * * * **
40334 ATTAAAACTCCAAAAATTAATAA-ATAAAAATTTTAAAA-ATAAATATGTTTTTT
128 AATAATATTCTAAAAATTAATAACA-AGAGA-TTTAAAACATAAATCTATTTACT
* * * *
40387 GAAC-ACATTC-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT-AACAATTT
1 GAACTA-GTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAAC-TTTT
* * * * * ** *
40449 GTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATT-AGAAATAAAATAATATTAATTT
64 GTTATGCCATAAAACAATTATTTCTATTCAGACAAGCCTATTCA-AAATAAAATAATACCAATAT
* * * * * *
40513 ATTAATATTTCT-AAAATTAATAAGTAAAAGATTTAAATA-ATAAATTTGTTTACC
128 AATAATA-TTCTAAAAATTAATAA-CAAGAGATTTAAA-ACATAAATCTATTTACT
* * * * * * * * * * *
40567 GAGCAAGTTTAAATAGTTATTACTATTTGGACAATTATATATTTCAAATCTTTATG-ATTTTTTT
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTGT
* * * * ** *** * * *
40631 TTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAATAAAATAATACTAATTTATT
66 TATGCCATAAAACAATTATTTCTATTCAGACAAGCCTATTCAAAATAAAATAATACCAATATAAT
* * ** * *
40696 ATTATTCTAAAATTTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTAC-
131 AATATTCTAAAAATTAATAA-CAAGAGATTTAAAACATAAATCTATTTACT
* * * * * * * *** * * **
40746 CAAATAAGTTTAAATAGTCATGTCCATTTGAATTGTTATTTATTTCAAATGGTTATG-ACATTTT
1 GAACT-AGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAAC-TTTT
* *** * * * *** * * *
40810 GTTTTATTATAAAATAATTGTTTCTATTCACACAAAATTATTCAGAATAAAATAATATCAATTTA
64 GTTATGCCATAAAACAATTATTTCTATTCAGACAAGCCTATTCAAAATAAAATAATACCAATATA
* * * * * * * * *
40875 TTACTATTTTGAAAATTAAT---AAG-GATTTAAAAAAAAAATGTGTTTTCT
129 ATAATATTCTAAAAATTAATAACAAGAGATTTAAAACATAAATCTATTTACT
* * * * * *
40923 GAAAC-AGTTCAAATAGTTAAGACTATTAGAACAATTATCTAT-TCAAATTATTCTGATCTTTTG
1 G-AACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTG
* * * * * * * * * * *
40986 TT-TAGTCAAAAAATAATTGTTTC-AGTTCATG-CATGCTTATTTAAAATATAGTAATACTAATT
65 TTAT-GCCATAAAACAATTATTTCTA-TTCA-GACAAGCCTATTCAAAATAAAATAATACCAATA
* * * *
41048 TATTAAAATT-TAGAAAATTAATAAGAA-A-TTTTAAAA-A-AAATCTATTTACT
127 TAATAATATTCTA-AAAATTAATAACAAGAGATTTAAAACATAAATCTATTTACT
* * * * ** * *
41098 GAA-TAAGTTTAAATAGTTATGACTATTTGAACAATTATCTATTTAAAATCGCTATGACCTTTTA
1 GAACT-AGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTG
* ** * * * * * * * * **
41162 TTTTATCATAAAACAACTATTTCAATACATAAAAG-TTTTTCAAAATAAAATAATATTGCTTTAT
65 TTATGCCATAAAACAATTATTTCTATTCAGACAAGCCTATTCAAAATAAAATAATA--CCAATAT
* *** * *
41226 GAAT-AT-TTC-AAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATC-AGTTTA-T
128 -AATAATATTCTAAAAATTAATAA-CAAGAGATTTAAAACATAAATCTA-TTTACT
* * * * * *
41277 CAAATTA-TTCAAATAATTATGCCTATTTGAATAATTATCTATTTCAAATCATTATGAACTTTTG
1 -GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTG
* * * * *** *
41341 TTTTGCCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAAATAATACCAATTTA
65 TTATGCCATAAAACAATTATTTCT-ATTCAGACAAGCCTATTCAAAATAAAATAATACCAATATA
* * * *
41405 CTAATTTTC-AAAAATTAAT-A-AA-AGATTTAAAA-AGTTAATCTATTTATT
129 ATAATATTCTAAAAATTAATAACAAGAGATTTAAAACA-TAAATCTATTTACT
* * **
41453 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATGTATATGAAATTGTTAT-AACCTTTTG
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAA-CTTTTG
** *
41517 TTAT-CTCATAAAACAATTATTTCTATTCAGACAAGTTTATTCAAAATAAAATAATACTAATATA
65 TTATGC-CATAAAACAATTATTTCTATTCAGACAAGCCTATTCAAAATAAAATAATACCAATATA
* *
41581 ATAATATTCTACAAATTAATAACTAAGAGATTTAAAACATAAATTTATTTACT
129 ATAATATTCTAAAAATTAATAAC-AAGAGATTTAAAACATAAATCTATTTACT
* * * * * * *
41634 GAACTAGTTCAAATATTTAAGGCTATATGAACAATTCTTTATTTCAAATCATTATGACCTTTTGT
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTGT
* * * * * * *** * * *
41699 TTTG-TAGTAAAATAATT-TTTTTCATTTCTTAG-TAA-CTTATTTGGAATAAAGTAAAACAAAT
66 TATGCCA-TAAAACAATTATTTCT-A-TTC--AGACAAGCCTATTCAAAATAAAATAATACCAAT
* * * * * * * *
41760 TTATTAATATT-TCAAAACTTACTAAGCAAGAGATTTAAAAAACAATTC-AGTTTGCCT
126 ATAATAATATTCT-AAAAATTAATAA-CAAGAGATTTAAAACATAAATCTA-TTT-ACT
* * * * * * * ** *
41817 -AACCAATTCAAATAATTAGGTCTATTTGAACAATTATCTATTTCGAATCATTATGTTCTTTTAT
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTGT
* * * * * * * * * ** * ** * ** * *
41881 TTTGTCATAAAACAAATGTTTTTGTACATATAAGTTTGTTCGGAATAAAACAATATTAATTTATT
66 TATGCCATAAAACAATTATTTCTATTCAGACAAGCCTATTCAAAATAAAATAATACCAATATAAT
* * * * *
41946 AATATTTTGAAAA-T--TAAGAAGAAATTTAAAA-AGTAAAACTATTTACT
131 AATATTCTAAAAATTAATAACAAGAGATTTAAAACA-TAAATCTATTTACT
* * * * * * *
41993 AAACTAGTTCAATTAGTTATAACTATTTAAACAATTATTTATTTCAAATCATTATG-ACTATTTG
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACT-TTTG
* * * * * * * * * *
42057 -TATTGTCATAAAATAATTATTTATGTTCATAC-AGTCTTATTCCAAATAAAGTAATACTAATTT
65 TTA-TGCCATAAAACAATTATTTCTATTCAGACAAG-CCTATTCAAAATAAAATAATACCAATAT
* ** * * * * * **
42120 ATTAATATT-TTGAAATTAATAAGTAATAGATTTAAAAAATGAATCAATTGGCCT
128 AATAATATTCTAAAAATTAATAA-CAAGAGATTTAAAACATAAATCTATT-TACT
* ** * * * * * *
42174 -TACTAGAGCAAATAGTTATGACTGTTTAAATAATTATCTATTTCTAATCATTAT-AACCTTTTG
1 GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAA-CTTTTG
42237 TT
65 TT
42239 TTATCACAAA
Statistics
Matches: 1440, Mismatches: 317, Indels: 189
0.74 0.16 0.10
Matches are distributed among these distances:
174 6 0.00
175 173 0.12
176 204 0.14
177 146 0.10
178 31 0.02
179 216 0.15
180 277 0.19
181 247 0.17
182 127 0.09
183 11 0.01
184 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
GAACTAGTTCAAATATTTATGACTATTTGAACAATTATCTATATCAAATCATTATGAACTTTTGT
TATGCCATAAAACAATTATTTCTATTCAGACAAGCCTATTCAAAATAAAATAATACCAATATAAT
AATATTCTAAAAATTAATAACAAGAGATTTAAAACATAAATCTATTTACT
Done.