Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168469.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_69, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 131203
ACGTcount: A:0.43, C:0.08, G:0.07, T:0.42
File 2 of 3
Found at i:42258 original size:19 final size:19
Alignment explanation
Indices: 42234--42282 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
42224 TTATAACCTT
*
42234 TTGTTTTATCACAAAATAA
1 TTGTTTTATCACAAAACAA
* *
42253 TTGTTTCATCATAAAACAA
1 TTGTTTTATCACAAAACAA
42272 TTGTTTCTATC
1 TTGTTT-TATC
42283 TGTACTAGCT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 22 0.88
20 3 0.12
ACGTcount: A:0.35, C:0.14, G:0.06, T:0.45
Consensus pattern (19 bp):
TTGTTTTATCACAAAACAA
Found at i:42412 original size:16 final size:17
Alignment explanation
Indices: 42380--42412 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
42370 AACAAGTACA
42380 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
42398 AATAATTAT-CTATTT
1 AATAATTATACTATTT
42413 CTAATCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:43050 original size:17 final size:18
Alignment explanation
Indices: 43019--43060 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
43009 CACAAATATT
*
43019 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
43037 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
43054 AACTATT
1 AATTATT
43061 TGTTATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:43097 original size:20 final size:20
Alignment explanation
Indices: 43070--43155 Score: 51
Period size: 20 Copynumber: 4.4 Consensus size: 20
43060 TTGTTATGTA
43070 ATAT-AATTATTACATAATT
1 ATATAAATTATTACATAATT
*
43089 ATATAAATT-TATA-AGCAATCT
1 ATATAAATTAT-TACA-TAAT-T
43110 A-ATAAATTTATT-CATAATT
1 ATATAAA-TTATTACATAATT
* *
43129 A-ATAAATAATTATA-AATT
1 ATATAAATTATTACATAATT
43147 AATATAAAT
1 -ATATAAAT
43156 CATAAAAATT
Statistics
Matches: 53, Mismatches: 4, Indels: 19
0.70 0.05 0.25
Matches are distributed among these distances:
18 8 0.15
19 15 0.28
20 23 0.43
21 6 0.11
22 1 0.02
ACGTcount: A:0.52, C:0.05, G:0.01, T:0.42
Consensus pattern (20 bp):
ATATAAATTATTACATAATT
Found at i:43392 original size:17 final size:16
Alignment explanation
Indices: 43350--43401 Score: 65
Period size: 14 Copynumber: 3.3 Consensus size: 16
43340 TAATCTATAC
43350 AATTATAATTAA-TTT
1 AATTATAATTAATTTT
43365 AATTA-AA-TAATTTT
1 AATTATAATTAATTTT
43379 AATTATCAATTAATTTAT
1 AATTAT-AATTAATTT-T
43397 AATTA
1 AATTA
43402 ATAAAAACTA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
13 3 0.09
14 10 0.31
15 5 0.16
16 2 0.06
17 6 0.19
18 6 0.19
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (16 bp):
AATTATAATTAATTTT
Found at i:43393 original size:11 final size:10
Alignment explanation
Indices: 43350--43403 Score: 51
Period size: 11 Copynumber: 5.3 Consensus size: 10
43340 TAATCTATAC
43350 AATTATAATT
1 AATTATAATT
43360 AATT-TAATT
1 AATTATAATT
43369 AA--ATAATTTT
1 AATTATAA--TT
43379 AATTATCAATT
1 AATTAT-AATT
43390 AATTTATAATT
1 AA-TTATAATT
43401 AAT
1 AAT
43404 AAAAACTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
8 3 0.08
9 7 0.19
10 9 0.24
11 10 0.27
12 6 0.16
13 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (10 bp):
AATTATAATT
Found at i:43557 original size:26 final size:26
Alignment explanation
Indices: 43528--43594 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
43518 AATACTTATA
43528 ATTTATTATTAATTATCTGAA-TATTG
1 ATTT-TTATTAATTATCTGAATTATTG
* * * *
43554 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATCTGAATTATTG
43581 ATTTTTATTAATTA
1 ATTTTTATTAATTA
43595 ATATATAACT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTTTTATTAATTATCTGAATTATTG
Found at i:43559 original size:27 final size:29
Alignment explanation
Indices: 43529--43596 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 29
43519 ATACTTATAA
43529 TTTATTATTAATTATCTGAA-TATTGA-T
1 TTTATTATTAATTATCTGAATTATTGATT
* * * *
43556 TTTAAT-TTAAATATTTTAATTATTGATT
1 TTTATTATTAATTATCTGAATTATTGATT
43584 TTTATTAATTAAT
1 TTTATT-ATTAAT
43597 ATATAACTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 6 0.19
30 4 0.13
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTATTATTAATTATCTGAATTATTGATT
Found at i:44606 original size:181 final size:180
Alignment explanation
Indices: 44354--44728 Score: 437
Period size: 181 Copynumber: 2.1 Consensus size: 180
44344 TTTTAAATCA
* * * * *
44354 CTTATTAATTTTTAAAATATTAATAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAGCTG
1 CTTATTAATTTTTAAAAGATTAAGAAATTACTATTATTTTATTTAGAATAAGCTTGTATGAACTA
* * * *
44419 AAACAATTGTTTTATGAAAAAATAAAAGATCGTAATAATTTTAAGTAGATAATTATTCAAATAGT
66 AAACAATTGTTTTATGAAAAAACAAAAGATCATAACAATTTTAAATA-ATAATTATTCAAATAGT
* * * *
44484 CATAACTATTTGAATTTGTTCAGTAAACAAATTAATTTTTTTAAACTCTTG
130 CATAACTATTTAAACTTGATCAATAAACAAATTAATTTTTTTAAACTCTTG
* * * *
44535 CTTATTAGTTTTTGAAAGATTAAGAAATTAGTATTATTTTATTTTAG-ATAAGCTTTTATGAACT
1 CTTATTAATTTTTAAAAGATTAAGAAATTACTATTATTTTA-TTTAGAATAAGCTTGTATGAACT
* * ** * * *
44599 AAAACAATTTTTTTTTGTCAAAACAAAAGGTCATAACGATTTTAAATAATAATTGTTCAAATAGT
65 AAAACAATTGTTTTATGAAAAAACAAAAGATCATAACAATTTTAAATAATAATTATTCAAATAGT
* * ** * * *
44664 CATAACTATTTAAACTTGATCAATAAACATATTTACCTTTTGATATCTTTTG
130 CATAACTATTTAAACTTGATCAATAAACAAATTAATTTTTTTA-AACTCTTG
44716 CTTATTAATTTTT
1 CTTATTAATTTTT
44729 TGAATGTTAA
Statistics
Matches: 160, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
180 50 0.31
181 106 0.66
182 4 0.03
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.44
Consensus pattern (180 bp):
CTTATTAATTTTTAAAAGATTAAGAAATTACTATTATTTTATTTAGAATAAGCTTGTATGAACTA
AAACAATTGTTTTATGAAAAAACAAAAGATCATAACAATTTTAAATAATAATTATTCAAATAGTC
ATAACTATTTAAACTTGATCAATAAACAAATTAATTTTTTTAAACTCTTG
Found at i:44769 original size:14 final size:13
Alignment explanation
Indices: 44750--44803 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 13
44740 AATTTTAAAT
44750 TTTAAATATTTAA
1 TTTAAATATTTAA
44763 GTTTAAATATTTAA
1 -TTTAAATATTTAA
* *
44777 TTTTTATTATTTAA
1 -TTTAAATATTTAA
*
44791 TTATCAATATTTA
1 TT-TAAATATTTA
44804 TTAATAAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
13 2 0.06
14 32 0.94
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (13 bp):
TTTAAATATTTAA
Found at i:44787 original size:28 final size:28
Alignment explanation
Indices: 44747--44803 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
44737 AATAATTTTA
44747 AATTTTAAATATTTAAGTT-TAAATATTT
1 AATTTTAAATATTTAA-TTATAAATATTT
* * *
44775 AATTTTTATTATTTAATTATCAATATTT
1 AATTTTAAATATTTAATTATAAATATTT
44803 A
1 A
44804 TTAATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.08
28 23 0.92
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (28 bp):
AATTTTAAATATTTAATTATAAATATTT
Found at i:45453 original size:179 final size:180
Alignment explanation
Indices: 45049--45546 Score: 496
Period size: 179 Copynumber: 2.8 Consensus size: 180
45039 ATAGCTATGG
** * * * ** *
45049 CTATTTGAACGATTGTCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAGCAATTGTTTT
1 CTATTTGAATAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTCTTTT
** * *
45114 AGTTCATACAAGCTTATTCAAAATAAAATAAAACTAATTTATTAATATTCCAAAAATTAATAACT
66 AGTTCATACAAAATTATTCAAAATAAAAAAAAACTAATTTATTAACATTCCAAAAATT-ATAACT
* * * * * *
45179 AAGTGATTTAAAAAGTTAATTTGTTTATCGAATTAGTTCAAATAGTCATGT
130 AAGAGATTTAAAAAGTAAATCTGTTTATCAAATAAGTTCAAACAGTCATGT
* * * *
45230 CCATTTAAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTTTCATAAAATAATTCTTTT
1 CTATTTGAATAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTCTTTT
* * * **
45295 TGTTCATGCAAAATTATTCAAAATAAAAAAAATACTTATTTATTAACATTCTGAAAA-T-TAA-T
66 AGTTCATACAAAATTATTCAAAATAAAAAAAA-ACTAATTTATTAACATTCCAAAAATTATAACT
* *
45357 AAGAGATTTGAAAAGATAAATCTGTTTA-CTAAATAAGTTCAAACAGTTATGAT
130 AAGAGATTTAAAAAG-TAAATCTGTTTATC-AAATAAGTTCAAACAGTCATG-T
* * * *
45410 -TATTTGAATAATTATCTATTTAAAATTGTTATGAACTTTTGTTTTATCATAAAATAATTGTTTC
1 CTATTTGAATAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTCTTTT
* * * * * * * *
45474 AG-T-ATA-AAAGCTTATGCAACATAAAATAATACTACTTTATTAATATTTCAAAAA-T-TAA-T
66 AGTTCATACAAA-ATTATTCAAAATAAAAAAAAACTAATTTATTAACATTCCAAAAATTATAACT
45533 AAGAGATTTAAAAA
130 AAGAGATTTAAAAA
45547 AATAAATTAG
Statistics
Matches: 262, Mismatches: 50, Indels: 15
0.80 0.15 0.05
Matches are distributed among these distances:
176 39 0.15
177 17 0.06
178 16 0.06
179 87 0.33
180 1 0.00
181 82 0.31
182 20 0.08
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (180 bp):
CTATTTGAATAATTATCTATTTAAAATCGTTATGACCTTTTGTTTTATCATAAAATAATTCTTTT
AGTTCATACAAAATTATTCAAAATAAAAAAAAACTAATTTATTAACATTCCAAAAATTATAACTA
AGAGATTTAAAAAGTAAATCTGTTTATCAAATAAGTTCAAACAGTCATGT
Found at i:47753 original size:181 final size:180
Alignment explanation
Indices: 47242--47756 Score: 470
Period size: 181 Copynumber: 2.9 Consensus size: 180
47232 TAGATAATTG
*
47242 TTATGACTTTTT-TTTTGTCATAAAACAATTGTTTCTATTCA-ACAAGCTTA-TTCAGATTAAAA
1 TTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTC-GAATAAAA
* * *
47304 TAATATTAATTTAATAATATT-TTGATAATTAATAAGTAAAAGATTTAAAAAATAAATATA-TTT
65 TAATA-TAATTTATTAATATTCAT-AAAATTAATAAGT-AAAGATTT-AAAAATAAATATATTTT
** * * *
47367 ACTGAATAAGTTCAAATAGTCTA--ACTA-CTTGAATAATTATCTATTTCAAATCA
126 TTTGAAAAAGTTCAAATAGT-TATGACTATCTTAAACAATTATCTATTTCAAATCA
* * * * * * **
47420 TTATGACCTTTTGCTTTGTAATAAAACAATTGTTTC-AGTTAATATAA-ATTATTTAAAATAAAA
1 TTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTA-TTCATACAAGCTTATTTCGAATAAAA
* * * *
47483 TAATACTAATTTATTAATTTTCA-AAAATGAATGAGTGAAAGAATTAAAAA-AAATGA-ATTTGT
65 TAATA-TAATTTATTAATATTCATAAAATTAATAAGT-AAAGATTTAAAAATAAAT-ATATTT-T
*
47545 TTACTGAAAAAGTTCAAATACTTATGACTATC-TAAACAATTATCTATTTC-AATACA
126 TT--TGAAAAAGTTCAAATAGTTATGACTATCTTAAACAATTATCTATTTCAAAT-CA
* * * **
47601 TTATGACTTTTTGTTTTGTCAGAAAGCAATAGGATCTATTCATGA-AAGCTTATTTCGAATAAAA
1 TTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCAT-ACAAGCTTATTTCGAATAAAA
* *
47665 TAATATAAATTTATTAATATTCATAAAATTAATAAATAATA-ATTTAAACAATAAATTTATTTTT
65 TAATAT-AATTTATTAATATTCATAAAATTAATAAGTAA-AGATTTAAA-AATAAATATATTTTT
* *
47729 TTGAACAAGTTTAAATAGTTATGACTAT
127 TTGAAAAAGTTCAAATAGTTATGACTAT
47757 TTGTTTTGTG
Statistics
Matches: 269, Mismatches: 45, Indels: 43
0.75 0.13 0.12
Matches are distributed among these distances:
176 5 0.02
177 8 0.03
178 30 0.11
179 53 0.20
180 24 0.09
181 81 0.30
182 44 0.16
183 16 0.06
184 8 0.03
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.40
Consensus pattern (180 bp):
TTATGACTTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCGAATAAAAT
AATATAATTTATTAATATTCATAAAATTAATAAGTAAAGATTTAAAAATAAATATATTTTTTTGA
AAAAGTTCAAATAGTTATGACTATCTTAAACAATTATCTATTTCAAATCA
Found at i:48768 original size:183 final size:180
Alignment explanation
Indices: 48352--48962 Score: 464
Period size: 183 Copynumber: 3.4 Consensus size: 180
48342 TGCCAATTTG
* * * * * * * *
48352 AAATATAATAATACTAATT-TATTAACATTTAAAAAATTAATAAGCAAGAAATTAAAAAACATAA
1 AAATAAAATAAAACT-ATTGTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAA-ATAA
* ** * * ** * * * * *
48416 ATCAGTTTACTGAACAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAATCATTA
64 ATTA-TTTACCAAACCAGTTCAAATAATTAAGACCATTTAAACAATTATATATTTCAAATAATTA
* * ** * * * * * ** **
48481 TGACCTTTTATTTTATCATAAAACAAATGTTTCA-GTGCATAAAAGTTTATTGG
128 TAACCTTTTGTTACATCATAAAACAATTATTT-ATATTCATACAAGCCTATTAA
* * * * *
48534 AAATAAAATAATA-TGACT-TATTAATATTTCAAAAATTGATAAGTTAGAGATTTAAAAAATAAA
1 AAATAAAATAAAACT-ATTGTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA
* * * *
48597 TTAGTTTATCAAATCAGTTCAAATAATTACAG-CCATTTAAATAATTATCTATTTCAAATAATTA
65 TTA-TTTACCAAACCAGTTCAAATAATTA-AGACCATTTAAACAATTATATATTTCAAATAATTA
* * * * * *
48661 TGAA-CTTTTGTTTCATCATAAACCAATTGTTTTTCTATCATACAAGCCTATTCAT
128 T-AACCTTTTGTTACATCATAAAACAATTATTTATAT-TCATACAAGCCTATT-AA
* * * *
48716 TATTAAAATAAAACTAATT-TACTAATATTTCAATAATTAATAAGTAAGAGATTTAAAAAATAAA
1 AAATAAAATAAAACT-ATTGTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAA
* * * * * *
48780 TTTATTTACCGAACCGGTTCAAATAGTTAAGACTATTTGAACAATTATATATTTCAAATTATTAT
65 -TTATTTACCAAACCAGTTCAAATAATTAAGACCATTTAAACAATTATATATTTCAAATAATTAT
* * **
48845 AACCTTTTGTTACGTTATAAAACAATTATTTATATTCATACAAGTTTATTAA
129 AACCTTTTGTTACATCATAAAACAATTATTTATATTCATACAAGCCTATTAA
* *
48897 AAATAAAATAATACTATTGTAATAATA-TTCTAAAAATTAATAACTAAGAGATTTAAAAAATTAA
1 AAATAAAATAAAACTATTGTAATAATATTTC-AAAAATTAATAAGTAAGAGATTTAAAAAA-TAA
48961 AT
64 AT
48963 AAATTAGAAT
Statistics
Matches: 343, Mismatches: 74, Indels: 25
0.78 0.17 0.06
Matches are distributed among these distances:
180 83 0.24
181 97 0.28
182 43 0.13
183 117 0.34
184 3 0.01
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (180 bp):
AAATAAAATAAAACTATTGTAATAATATTTCAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT
TATTTACCAAACCAGTTCAAATAATTAAGACCATTTAAACAATTATATATTTCAAATAATTATAA
CCTTTTGTTACATCATAAAACAATTATTTATATTCATACAAGCCTATTAA
Found at i:49000 original size:11 final size:10
Alignment explanation
Indices: 48955--49004 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
48945 AGATTTAAAA
48955 AATTAAATA-
1 AATTAAATAT
48964 AATTAGAATAT
1 AATTA-AATAT
* *
48975 ATTTAATTAT
1 AATTAAATAT
48985 AATTAAATATT
1 AATTAAATA-T
48996 AATTAAATA
1 AATTAAATA
49005 AACTAATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
9 5 0.15
10 15 0.44
11 14 0.41
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
AATTAAATAT
Found at i:49158 original size:21 final size:22
Alignment explanation
Indices: 49127--49168 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
49117 AGTAGAGATT
*
49127 TTTACTTAATTATTATTATATA
1 TTTACTTAATTAATATTATATA
49149 TTTA-TTAATTAATATTATAT
1 TTTACTTAATTAATATTATAT
49169 TAATTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTACTTAATTAATATTATATA
Found at i:49178 original size:21 final size:22
Alignment explanation
Indices: 49132--49192 Score: 74
Period size: 21 Copynumber: 2.9 Consensus size: 22
49122 AGATTTTTAC
* *
49132 TTAATTATTATTATA-TATTTA
1 TTAATTAATATTATATTAATTA
49153 TTAATTAATATTATATTAATTA
1 TTAATTAATATTATATTAATTA
49175 -TAATTAATAATTA-ATTAA
1 TTAATTAAT-ATTATATTAA
49193 AAACCAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
21 27 0.75
22 9 0.25
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTAATTAATATTATATTAATTA
Found at i:51065 original size:22 final size:22
Alignment explanation
Indices: 51040--51083 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
51030 ATTTTTTGTC
*
51040 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
51062 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
51084 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:51466 original size:17 final size:15
Alignment explanation
Indices: 51457--51503 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
51447 ATTCACATTT
51457 AATTATAATTAATTA
1 AATTATAATTAATTA
*
51472 AATTAT-AGTAATTAA
1 AATTATAATTAATT-A
*
51487 TAATTCTAATTAATTA
1 -AATTATAATTAATTA
51503 A
1 A
51504 TATTCCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
14 6 0.23
15 8 0.31
16 6 0.23
17 6 0.23
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (15 bp):
AATTATAATTAATTA
Found at i:52273 original size:38 final size:38
Alignment explanation
Indices: 52225--52297 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
52215 TTCAATATGC
* *
52225 TTATTTATTAAACCCAATTATT-GATATAATTATATATT
1 TTATTAATTAAACACAATTATTAGATA-AATTATATATT
*
52263 TTATTAATTAAACATAATTATTAGATAAATTATAT
1 TTATTAATTAAACACAATTATTAGATAAATTATAT
52298 TATGATTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
38 27 0.87
39 4 0.13
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.48
Consensus pattern (38 bp):
TTATTAATTAAACACAATTATTAGATAAATTATATATT
Found at i:52518 original size:30 final size:31
Alignment explanation
Indices: 52469--52549 Score: 76
Period size: 30 Copynumber: 2.6 Consensus size: 31
52459 TACTATAATA
** *
52469 TATATTAATTTAAATATTAAATCTAA-TTTTATT
1 TATA-TAA-TTAAA-ATTAAATAAAATTTTTACT
*
52502 TATATAATTAAAATTAATTAAAATTTTTACT
1 TATATAATTAAAATTAAATAAAATTTTTACT
*
52533 TAT-TAATTTAAATTAAA
1 TATATAATTAAAATTAAA
52550 ATAATTGTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
30 20 0.49
31 14 0.34
32 3 0.07
33 4 0.10
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (31 bp):
TATATAATTAAAATTAAATAAAATTTTTACT
Found at i:52582 original size:16 final size:16
Alignment explanation
Indices: 52558--52612 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
52548 AAATAATTGT
52558 TATAA-TTAATAATAA
1 TATAATTTAATAATAA
* *
52573 TCTAATTTAATTATAA
1 TATAATTTAATAATAA
*
52589 TATATAATTAATTAATAA
1 TATA-ATTTAA-TAATAA
52607 TATAAT
1 TATAAT
52613 ATTTAAATTT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
15 4 0.13
16 12 0.39
17 6 0.19
18 9 0.29
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATTTAATAATAA
Found at i:52627 original size:19 final size:20
Alignment explanation
Indices: 52605--52645 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
52595 ATTAATTAAT
52605 AATA-TAATATTTAAAT-TTA
1 AATATTAAT-TTTAAATATTA
52624 AATATTAATTTTAAATATTA
1 AATATTAATTTTAAATATTA
52644 AA
1 AA
52646 ACTAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AATATTAATTTTAAATATTA
Found at i:52636 original size:13 final size:13
Alignment explanation
Indices: 52610--52645 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
52600 TTAATAATAT
52610 AATATTTAAATTTA
1 AATA-TTAAATTTA
*
52624 AATATTAATTTTA
1 AATATTAAATTTA
52637 AATATTAAA
1 AATATTAAA
52646 ACTAATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 16 0.80
14 4 0.20
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AATATTAAATTTA
Found at i:53327 original size:14 final size:14
Alignment explanation
Indices: 53308--53337 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
53298 TTAAGAGATT
53308 ATAAATTTAGTATA
1 ATAAATTTAGTATA
*
53322 ATAAATTTATTATA
1 ATAAATTTAGTATA
53336 AT
1 AT
53338 TTAAAGTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (14 bp):
ATAAATTTAGTATA
Found at i:53712 original size:18 final size:19
Alignment explanation
Indices: 53670--53717 Score: 64
Period size: 18 Copynumber: 2.6 Consensus size: 19
53660 TATTGGTTAA
53670 AATAT-ATTATATAATTTAT
1 AATATAATTA-ATAATTTAT
53689 AATATAATTAATAA-TTAT
1 AATATAATTAATAATTTAT
*
53707 ATTATAATTAA
1 AATATAATTAA
53718 AAATATTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 14 0.52
19 9 0.33
20 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
AATATAATTAATAATTTAT
Found at i:53723 original size:15 final size:17
Alignment explanation
Indices: 53666--53726 Score: 53
Period size: 18 Copynumber: 3.9 Consensus size: 17
53656 ATTTTATTGG
53666 TTAA-AATATATTAT-A
1 TTAATAATATATTATAA
* *
53681 -TAAT-TTATAATATAA
1 TTAATAATATATTATAA
53696 TTAATAATTATATTATAA
1 TTAATAA-TATATTATAA
53714 TTAA-AA-ATATTAT
1 TTAATAATATATTAT
53727 TGGTTTTAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
14 10 0.27
15 8 0.22
16 4 0.11
17 2 0.05
18 13 0.35
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTAATAATATATTATAA
Found at i:53727 original size:18 final size:18
Alignment explanation
Indices: 53685--53721 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
53675 ATTATATAAT
* *
53685 TTATAATATAATTAATAA
1 TTATATTATAATTAAAAA
53703 TTATATTATAATTAAAAA
1 TTATATTATAATTAAAAA
53721 T
1 T
53722 ATTATTGGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TTATATTATAATTAAAAA
Found at i:53884 original size:22 final size:23
Alignment explanation
Indices: 53824--53986 Score: 68
Period size: 23 Copynumber: 7.4 Consensus size: 23
53814 ATTAATATAC
*
53824 AATTA-ATTAATAAAATAATATT
1 AATTATATTAATATAATAATATT
*
53846 AATTATGTT-ATAATAATAA-ATT
1 AATTATATTAAT-ATAATAATATT
*
53868 AATTATATTAATTTAATATATGATT
1 AATTATATTAATATAATA-AT-ATT
* *
53893 -ATTA-ATTATAGATATTAAATATT
1 AATTATATTA-ATATAAT-AATATT
*
53916 -A-TATATTAATCCTAAT-A-ATT
1 AATTATATTAAT-ATAATAATATT
* *
53936 AA-TA-ATTATTATAATAATGTTT
1 AATTATATTAATATAATAAT-ATT
* *
53958 ACTTA-ATTAGTATAATAA-ATT
1 AATTATATTAATATAATAATATT
53979 -A-TATATTA
1 AATTATATTA
53987 TAATAATTAA
Statistics
Matches: 108, Mismatches: 17, Indels: 34
0.68 0.11 0.21
Matches are distributed among these distances:
19 6 0.06
20 13 0.12
21 6 0.06
22 29 0.27
23 40 0.37
24 10 0.09
25 4 0.04
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (23 bp):
AATTATATTAATATAATAATATT
Found at i:54963 original size:10 final size:11
Alignment explanation
Indices: 54942--54981 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
54932 ATGTTTAACA
*
54942 TAATTCATAAT
1 TAATTAATAAT
54953 TAATT-ATAAT
1 TAATTAATAAT
54963 TAATTAATAA-
1 TAATTAATAAT
54973 T-ATTAATAA
1 TAATTAATAA
54982 ATAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:54979 original size:13 final size:14
Alignment explanation
Indices: 54949--54991 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
54939 ACATAATTCA
*
54949 TAATTAATTATAAT
1 TAATTAATAATAAT
54963 TAATTAATAAT-AT
1 TAATTAATAATAAT
*
54976 TAATAAATAAATAAT
1 TAATTAAT-AATAAT
54991 T
1 T
54992 TATATAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 13 0.52
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAATAATAAT
Found at i:54998 original size:17 final size:17
Alignment explanation
Indices: 54968--55000 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
54958 ATAATTAATT
54968 AATAATATTAATAAATA
1 AATAATATTAATAAATA
54985 AATAAT-TTATATAAAT
1 AATAATATTA-ATAAAT
55001 TATTTGATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AATAATATTAATAAATA
Found at i:57177 original size:181 final size:179
Alignment explanation
Indices: 56923--58151 Score: 606
Period size: 181 Copynumber: 7.1 Consensus size: 179
56913 ATCGAACCGG
* * * * * * *
56923 TTCAAATAATTATAACTATTTAAACAATTATTTATTTCAAATCATTATTACTTTTTGTTTTGTCA
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTTA
* * *
56988 TAAAACAATTGTTTTTGTTAAGATAAGTTTGTTTAAAATAAAATAATACTAATTTATTAATATTT
66 TAAAACAATTG-TTTTGTTAAGATAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTT
* * * *
57053 AGAAAATTAATTAGTAAGAGATTTAAAAAGTAAATTTGTTTACCAAACCAT
130 AGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTA-CAAACCAA
* * * ** *
57104 TTCAAATAGTTTTGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTATTTTGTTA
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTTA
* * * * * *
57169 TTAAACAATTGGTTCTGTTCATGCT-ATTTTCTTTAGAATAAAATAATACTAATTTAATAATATT
66 TAAAACAATT-GTTTTGTT-AAGATAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATT
* * ** * ** ** *
57233 TTGAAACTTAATAACCCAA-AAAATTAAAAAATAAATCTAATTGT-TGAACCAG
129 TAGAAAATTAATAA-GTAAGAAATTTAAAAAATAAAT-TTGTT-TACAAACCAA
* * * * * * * * *
57285 TTAAAATAGTTATGACGATATGAATAATCATCTATTTTAAATCATTATGACCTTTTCTTTTGTTG
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTTA
* * * *
57350 TAAAACAATTGTTTTGTT-CGTACAAGCTTATTCT-GATTAAAATAATACTAATTTAATAATATT
66 TAAAACAATTGTTTTGTTAAG-ATAAGTTTATT-TAGAATAAAATAATACTAATTTAATAATA-T
* *
57413 TTA-AAAGTTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTACAAATCAA
128 TTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTACAAACCAA
* * * * * * ** *
57464 TTCAAATGGTTAAGACTATTAAAACAATTATCTATTTAAAATCGTTCTGACCTTTTGCTTAGTTA
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTTA
* * * * * * * * *
57529 TAAAATAATTGTTCTAGTTCATACAAGCTTATTCAGAAT-AAAT--TAATAA--TAAT-TTA-TT
66 TAAAACAATTGTT-TTGTTAAGATAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTT
* * *
57587 AG--CATTCAA-AA--AAGAGATTTAAAAAAATAAATTTGTTT----ACCAT
130 AGAAAATT-AATAAGTAAGAAATTT-AAAAAATAAATTTGTTTACAAACCAA
* *
57630 TTGAACA-A-TT-T-TCTATTT--A-AA--ATC-A--T----T-A-TA--ACCTTTTGA-TTTGT
1 TTCAA-ATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTT-ATTTTGT
* * * * * * ** *
57674 CATAAAACAATTATTTAAGTTAATACAAGCTTGA--GGGAATAAAATAATACTAATTTATTAATA
64 TATAAAACAATTGTTT-TGTTAAGATAAG-TTTATTTAGAATAAAATAATACTAATTTAATAATA
** * *
57737 TTTCCTAAAA-TAATAAGTAAAAAATTT-AAAAATAAATTTGTTTACAAAATCAA
127 TTT-AGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTAC-AAACCAA
* * * * * ** * * * *
57790 TTAAAATAATTATGGCCATTTGAATGATTATCTGTTTCAAATCGTTATGACCTTTTGTTTTGTCA
1 TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTTA
* * * * * * * * * **
57855 TAAAATATTTGTTTTTGATCATATAAGCTTATTCAAAATAAAATATTACTAATTTTTTAATATTT
66 TAAAACAATTG-TTTTGTTAAGATAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTT
* *
57920 CA-AAAATTAATAAG--AG--ATTTAAAAAAATAAATATGTTTATCAAACCAG
130 -AGAAAATTAATAAGTAAGAAATTT-AAAAAATAAATTTGTTTA-CAAACCAA
* * * * * * *
57968 TTTAAATAGTTATGACTATTTGAACAATTATC-AGTCTCAAATCATTAAGATC-TTTGTTTTGTC
1 TTCAAATAGTTATGACTATTTAAACAATTATCTA-TTTCAAATCATTATGACCTTTTATTTTGTT
* * * * * * *
58031 ATAAAACAATTATTTCT-TATCATAGAAGCTTATTCAG-TTAAAAATAATACTAATTTAATAATA
65 ATAAAACAATTGTTT-TGT-TAAGATAAGTTTATTTAGAAT-AAAATAATACTAATTTAATAATA
* * *
58094 TTT-CAAAATT--TAA-TAAGAGATTTAAAAAA-AAA--T-TTTACCGAACCAA
127 TTTAGAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTA-CAAACCAA
58140 TTCAAATAGTTA
1 TTCAAATAGTTA
58152 AAATTATTAG
Statistics
Matches: 801, Mismatches: 171, Indels: 161
0.71 0.15 0.14
Matches are distributed among these distances:
146 5 0.01
147 38 0.05
148 2 0.00
149 6 0.01
151 4 0.00
152 2 0.00
153 2 0.00
154 2 0.00
155 20 0.02
156 1 0.00
157 8 0.01
158 3 0.00
159 1 0.00
160 10 0.01
161 3 0.00
162 1 0.00
163 10 0.01
165 3 0.00
166 8 0.01
167 1 0.00
168 3 0.00
169 8 0.01
170 17 0.02
171 5 0.01
172 26 0.03
173 1 0.00
174 5 0.01
175 10 0.01
176 20 0.02
177 71 0.09
178 66 0.08
179 109 0.14
180 120 0.15
181 200 0.25
182 9 0.01
183 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
TTCAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTATTTTGTTA
TAAAACAATTGTTTTGTTAAGATAAGTTTATTTAGAATAAAATAATACTAATTTAATAATATTTA
GAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTACAAACCAA
Found at i:58084 original size:177 final size:178
Alignment explanation
Indices: 57625--58123 Score: 487
Period size: 177 Copynumber: 2.8 Consensus size: 178
57615 AAATTTGTTT
* * * *
57625 ACCATTTGAACAATTTTCTA-TTTAAAATCATTATA-ACCTTTTGATTTGTCATAAAACAATTAT
1 ACCATTTGAACAATTATC-AGTCTCAAATCATTA-AGACCTTTTGTTTTGTCATAAAACAATTAT
** * * * *** *
57688 TTAAGTTAATACAAGCTTGA--GGGAATAAAATAATACTAATTTATTAATATTTCCTAAAATAAT
64 TTTTGATCATAGAAGCTT-ATTCAAAATAAAATAATACTAATTTATTAATATTT-C-AAAA-ATT
* * * *
57751 AAGTAAAAAATTT--AAAAATAAATTTGTTTACAAAATCAATTAAAATAATTATG
125 AA-TAAGAGATTTAAAAAAATAAATATGTTTACAAAACCAATTAAAATAATTATG
* ** * * * * * * *
57804 GCCATTTGAATGATTATCTGTTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATATTTGTTT
1 ACCATTTGAACAATTATCAGTCTCAAATCATTAAGACCTTTTGTTTTGTCATAAAACAATTATTT
* * *
57869 TTGATCATATAAGCTTATTCAAAATAAAATATTACTAATTTTTTAATATTTCAAAAATTAATAAG
66 TTGATCATAGAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * *
57934 AGATTTAAAAAAATAAATATGTTTATC-AAACCAGTTTAAATAGTTATG
131 AGATTTAAAAAAATAAATATGTTTA-CAAAACCAATTAAAATAATTATG
* *
57982 ACTATTTGAACAATTATCAGTCTCAAATCATTAAGATC-TTTGTTTTGTCATAAAACAATTATTT
1 ACCATTTGAACAATTATCAGTCTCAAATCATTAAGACCTTTTGTTTTGTCATAAAACAATTATTT
** * *
58046 CTT-ATCATAGAAGCTTATTC-AGTTAAAAATAATACTAATTTAATAATATTTCAAAATTTAATA
66 -TTGATCATAGAAGCTTATTCAAAAT-AAAATAATACTAATTTATTAATATTTCAAAAATTAATA
58109 AGAGATTTAAAAAAA
129 AGAGATTTAAAAAAA
58124 AATTTTACCG
Statistics
Matches: 262, Mismatches: 49, Indels: 20
0.79 0.15 0.06
Matches are distributed among these distances:
176 10 0.04
177 92 0.35
178 69 0.26
179 64 0.24
180 27 0.10
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (178 bp):
ACCATTTGAACAATTATCAGTCTCAAATCATTAAGACCTTTTGTTTTGTCATAAAACAATTATTT
TTGATCATAGAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
AGATTTAAAAAAATAAATATGTTTACAAAACCAATTAAAATAATTATG
Found at i:58405 original size:25 final size:26
Alignment explanation
Indices: 58371--58429 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
58361 TAATTTTAAT
*
58371 TAAATTATTAATATAGA-ATTAATTAA
1 TAAATAATTAATATAGATATTAA-TAA
*
58397 T-AATAATTAATATTGATATTAATAA
1 TAAATAATTAATATAGATATTAATAA
58422 TAAATAAT
1 TAAATAAT
58430 ATTAATATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 17 0.59
26 12 0.41
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.42
Consensus pattern (26 bp):
TAAATAATTAATATAGATATTAATAA
Found at i:58420 original size:22 final size:21
Alignment explanation
Indices: 58392--58461 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
58382 TATAGAATTA
*
58392 ATTAATAATAATTAATATTGAT
1 ATTAATAATAA-TAATATTAAT
58414 ATTAATAATAAATAATATTAAT
1 ATTAATAAT-AATAATATTAAT
* *
58436 ATTTAGTTATAATAATATTAAT
1 A-TTAATAATAATAATATTAAT
58458 ATTA
1 ATTA
58462 TTATTATTAG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
21 3 0.07
22 32 0.74
23 8 0.19
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (21 bp):
ATTAATAATAATAATATTAAT
Found at i:58435 original size:6 final size:6
Alignment explanation
Indices: 58376--58467 Score: 54
Period size: 6 Copynumber: 15.8 Consensus size: 6
58366 TTAATTAAAT
* * *
58376 TATTAA TA-TAGA -ATTAA TTAATAA TAATTAA TATTGA TATTAA TAATAA
1 TATTAA TATTA-A TATTAA -TATTAA T-ATTAA TATTAA TATTAA TATTAA
* *
58425 -A-TAA TATTAA TATT-- TAGTT-A TAATAA TATTAA TATTAT TATTA
1 TATTAA TATTAA TATTAA TA-TTAA TATTAA TATTAA TATTAA TATTA
58468 TTAGGTATTA
Statistics
Matches: 68, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
4 5 0.07
5 9 0.13
6 45 0.66
7 9 0.13
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (6 bp):
TATTAA
Found at i:59121 original size:181 final size:178
Alignment explanation
Indices: 58701--59929 Score: 868
Period size: 181 Copynumber: 6.9 Consensus size: 178
58691 ATTTAGCACG
* * * * * * * * *
58701 ATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACTAATAT-GGTAAATAGATTTAT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGT-TCGATAAACAAATTTAT
* * * *
58765 TTATTAAATC-T--CTTATTAATTTTGAAAGATTAATAAATTAA-TATTATTTTATTTTGAACAA
65 TTTTTAAATCTTCACTTATTAATTTTCAAATATTAAT-AA-TAAGTATTATTTTATTTTGAATAA
* * * * ** * *
58826 ACTTATATGAACA-AAACATTTGTTTTACAACAAAACAAAAAGTCATAACG
128 GCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * * * * *
58876 ATTTGAAATAGATAATTATTCATATAG-CCTTA-TATTTGAATTGGTTCAATAAATAAATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
* * * *
58939 TTTTAAATCTATCAGTTATTAAATTTCATAAAATTACTAGATAAGTATTATTTTATTTTGAATAA
66 TTTTAAATCT-TCACTTATTAATTTTCA-AATATTAATA-ATAAGTATTATTTTATTTTGAATAA
* *
59004 GCTTGTATGAAGATAAATAATTGTTTTATGACAAAACAAAAGGTTATAACA
128 GCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* *
59055 ATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
* * * * * * *
59120 TTTTAAATCTCCTATTTATTAATTTTTCAAATATCAATAAATTAGTATTATTTTATTCTAAATAG
66 TTTTAAATCTTC-ACTTATTAA-TTTTCAAATATTAAT-AATAAGTATTATTTTATTTTGAATAA
* * * ** **
59185 GCTTGTATGATGAAAAACAATTATTTTATGACAAAACAAAAATTCATAATG
128 GCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * *
59236 ATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACT-GATTCGATAAACTAATTTTA
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAG-TTCGATAAAC-AAATTTA
* * ** * *
59300 TATTTTAAATCTCTAACTTATCGATTTTTATAATATTAATAAGTAA-TATTATTTTA-TTTCAGA
64 TTTTTTAAATCT-TCACTTATTAATTTTCA-AATATTAATAA-TAAGTATTATTTTATTTTGA-A
* * * * *
59363 TAAGCTTTTTATGAA-CTGAAACAATTGTTTTATGATAAAATATAAGGTCATAACA
125 TAAGC-TTGTATGAAGAT-AAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * * * *
59418 ATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTGTTCGGTAAATAGATTT-TT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
* * * * * * *
59482 TTCTAATTTCTT-ACTTAATAATTTTCCGAATGTTAATAAATTAGTATTTTTTTTATTTTGAATA
66 TTTTAA-ATCTTCACTTATTAATTTT-CAAATATTAAT-AATAAGTA-TTATTTTATTTTGAATA
* * * * * * **
59546 AGCATGTATG-AGTTGAAGCAATTATTTTATGACTAAACAAAAGGTCAAAATG
127 AGCTTGTATGAAGAT-AAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * * * *
59598 ATTTAAAATGGATAATTGTTCTAATAGTCTTAACTATTTGAACT-GATTC-AGCAAACACATTTA
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAG-TTCGA-TAAACAAATTTA
* * * * * * *
59661 TTTTTTAAATCCTT-ACTTATTAATGTTT-AGAATATTATTAATTTAGCAATATTTTACTCTAAA
64 TTTTTTAAAT-CTTCACTTATTAAT-TTTCA-AATATTAATAA-TAAGTATTATTTTATTTTGAA
* * ** * * * * *
59724 TAAGCTTGT-TGAATAGAATTAAATGTTTTAGGACCAAACAAAA-ATCATCACA
125 TAAGCTTGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
* ** * * * * * *
59776 ATTAGAGTTAGATAATTGTTCAAATAGTCATAACTATTTAAACTAGTTTGGTAAAGAGATTTAGT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
* * * *
59841 TTTTAAATC-T--CTTATTAATTTTCAAAATAATAATAAAATAGTATTATTTTATTCTGAATAAT
66 TTTTAAATCTTCACTTATTAATTTTC-AAATATTAATAATA-AGTATTATTTTATTTTGAATAAG
* * *
59903 TTTGTATGAATAGAAACAATTGGTTTT
129 CTTGTATGAAGATAAACAATT-GTTTT
59930 GGAACATTAA
Statistics
Matches: 819, Mismatches: 190, Indels: 88
0.75 0.17 0.08
Matches are distributed among these distances:
172 1 0.00
173 30 0.04
174 5 0.01
175 63 0.08
176 14 0.02
177 21 0.03
178 97 0.12
179 99 0.12
180 125 0.15
181 235 0.29
182 128 0.16
183 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (178 bp):
ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
TTTTAAATCTTCACTTATTAATTTTCAAATATTAATAATAAGTATTATTTTATTTTGAATAAGCT
TGTATGAAGATAAACAATTGTTTTATGACAAAACAAAAGGTCATAACA
Found at i:59435 original size:363 final size:351
Alignment explanation
Indices: 58701--59911 Score: 1084
Period size: 362 Copynumber: 3.4 Consensus size: 351
58691 ATTTAGCACG
* * * * * *
58701 ATTTGAAATAAATAAATGTTCAAATTGTTATAACTAATTGAACTAATAT-GGTAAATAGATTTAT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGT-TCGGTAAATAGATTTAT
* * * * * * *
58765 TTATTAAATCTCTTATTAATTTTGAAAGATTAATAAATTAATATTATTTTATTTTGAACAAACTT
65 TTTTTAAATCTCTTATTAATTTTCAAATATTAATAAATTAGTATTATTTTATTCTGAATAAGCTT
* * * ** *
58830 ATATGA--ACAAAACATTTGTTTTACAACAAAACAAAAAGTCATAACGATTTGAAATAGATAATT
130 GTATGATGA-AAAACAATTATTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATT
* * * * * * * * *
58893 ATTCATATAGCCTTATATTTGAATTGGTTCAATAAA-TAAATTTATTTTTTAAATCTATCAGTTA
194 GTTTAAATAGCCTAATATTTGAACTGATTC-ATAAACT-AATTTATTTTTTAAATCTCTAACTTA
* * * * *
58957 TTAAATTTCATAAAATTACT-AGATAAGTATTATTTTATTT-TGAATAAGCTTGTATGAA-GATA
257 TTAATTTTTATAATATTAATAAG-TAA-TATTATTTTATTTCAG-ATAAGCTTGTATGAATG--A
*
59019 AATAATTGTTTTATGACAAAACAAAAGGTTATAACA
317 AATAATTGTTTTATGACAAAAC-AAAGGTCATAACA
* * * * *
59055 ATTGGAAATATATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGATAAACAAATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAATAGATTTATT
* * *
59120 TTTTAAATCTCCTATTTATTAATTTTTCAAATATCAATAAATTAGTATTATTTTATTCTAAATAG
66 TTTTAAATCT-C---TTATTAA-TTTTCAAATATTAATAAATTAGTATTATTTTATTCTGAATAA
*
59185 GCTTGTATGATGAAAAACAATTATTTTATGACAAAACAAAAATTCATAATGATTTGAAATAGATA
126 GCTTGTATGATGAAAAACAATTATTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATA
* *
59250 ATTGTTTAAATGGCCATAATTATTTGAACTGATTCGATAAACTAATTTTATATTTTAAATCTCTA
191 ATTGTTTAAATAGCC-TAA-TATTTGAACTGATTC-ATAAACTAA-TTTATTTTTTAAATCTCTA
** *
59315 ACTTATCGATTTTTATAATATTAATAAGTAATATTATTTTATTTCAGATAAGCTTTTTATGAACT
252 ACTTATTAATTTTTATAATATTAATAAGTAATATTATTTTATTTCAGATAAGC-TTGTATGAA-T
* * *
59380 GAAACAATTGTTTTATGATAAAATATAAGGTCATAACA
315 GAAATAATTGTTTTATGACAAAACA-AAGGTCATAACA
* * * *
59418 ATTTTAAATAGATAATTGTTCAAATAGTCAAAAATATTTGAACTTGTTCGGTAAATAGATTT-TT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAATAGATTTATT
* * * * * * *
59482 TTCTAATTTCTTACTTAATAATTTTCCGAATGTTAATAAATTAGTATTTTTTTTATTTTGAATAA
66 TTTTAA-ATC-T-CTTATTAATTTT-CAAATATTAATAAATTAGTA-TTATTTTATTCTGAATAA
* * * * * * *
59547 GCATGTATGAGTTG--AAGCAATTATTTTATGACTAAACAAAAGGTCAAAATGATTTAAAATGGA
126 GCTTGTATGA--TGAAAAACAATTATTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGA
* *
59610 TAATTGTTCT-AATAGTCTTAACTATTTGAACTGATTCAGCAAAC-ACATTTATTTTTTAAATC-
189 TAATTGTT-TAAATAG-CCTAA-TATTTGAACTGATTCA-TAAACTA-ATTTATTTTTTAAATCT
* * * * * ** * * *
59672 CTTACTTATTAATGTTTAGAATATTATTAATTTAGCAATATTTTA-CTCTAAATAAGCTTGT-TG
249 CTAACTTATTAATTTTTATAATATTAATAA-GTAATATTATTTTATTTC-AGATAAGCTTGTATG
* * * * ** *
59735 AATAGAATTAAATGTTTTAGGACCAAACAAAAATCATCACA
312 AAT-GAAATAATTGTTTTATGACAAAACAAAGGTCATAACA
* ** * * * *
59776 ATTAGAGTTAGATAATTGTTCAAATAGTCATAACTATTTAAACTAGTTTGGTAAAGAGATTTAGT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAATAGATTTATT
* * **
59841 TTTTAAATCTCTTATTAATTTTCAAAATAATAATAAAATAGTATTATTTTATTCTGAATAATTTT
66 TTTTAAATCTCTTATTAATTTTC-AAATATTAATAAATTAGTATTATTTTATTCTGAATAAGCTT
59906 GTATGA
130 GTATGA
59912 ATAGAAACAA
Statistics
Matches: 694, Mismatches: 130, Indels: 65
0.78 0.15 0.07
Matches are distributed among these distances:
353 1 0.00
354 62 0.09
355 25 0.04
356 26 0.04
357 1 0.00
358 71 0.10
359 70 0.10
360 90 0.13
361 59 0.09
362 147 0.21
363 135 0.19
364 6 0.01
365 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (351 bp):
ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCGGTAAATAGATTTATT
TTTTAAATCTCTTATTAATTTTCAAATATTAATAAATTAGTATTATTTTATTCTGAATAAGCTTG
TATGATGAAAAACAATTATTTTATGACAAAACAAAAAGTCATAATGATTTGAAATAGATAATTGT
TTAAATAGCCTAATATTTGAACTGATTCATAAACTAATTTATTTTTTAAATCTCTAACTTATTAA
TTTTTATAATATTAATAAGTAATATTATTTTATTTCAGATAAGCTTGTATGAATGAAATAATTGT
TTTATGACAAAACAAAGGTCATAACA
Found at i:61237 original size:175 final size:175
Alignment explanation
Indices: 61036--61543 Score: 448
Period size: 181 Copynumber: 2.9 Consensus size: 175
61026 AAATTTGTTA
* * * *
61036 CTTATTAATTGTT-AGAATATTAATAAATTAGCATTACTTTATTCCAAAAAGACTATATCAATAG
1 CTTATTAATT-TTCAAAATATTAATAAATTAGTATTACTTTATTCCAAAAA-ACTATATCAACAA
* *
61100 AAATAATTGTTTTATGACAAAACAAAGGGTTATAACAATATGAAATAAATAATTATT-AAATTG-
64 AAATAATTGTTTTATGACAAAACAAAAGGTTATAACAATATGAAATAAATAATTATTCAAATAGC
* **** * *
61163 TTATAACTAATTGAACTAGTTTGGTATACAAATTTATTTTTTAAATCT
129 CT-TAACTAATTGAACTAGTTCAACAAACAAATTTATTTTTCAAATCT
* * * * *
61211 CTTATTAATTTTCAAAATATTAATAAATTAATATTATTTTATTCTAAACAAAATTATATTAACAA
1 CTTATTAATTTTCAAAATATTAATAAATTAGTATTACTTTATTC-CAA-AAAACTATATCAACAA
* * * * ** * * * *
61276 AAACATTTGTTTTATGAAAAAATAAAAGAATATAACGATTTGAAATAGATAATTATTCATATAGC
64 AAATAATTGTTTTATGACAAAACAAAAGGTTATAACAATATGAAATAAATAATTATTCAAATAGC
* *
61341 CTTAACTATTTGAACTAGTTCAACAAATAAATTTATTTTTCAAATCT
129 CTTAACTAATTGAACTAGTTCAACAAACAAATTTATTTTTCAAATCT
* * * * * * * * *
61388 CTTAATTATTAATTTTCATAATATTATTAGATTAGTATTACTTTCTTTCGAATAACCTTGTATGA
1 C----TTATTAATTTTCAAAATATTAATAAATTAGTATTACTTT-ATTCCAAAAAAC-TATATCA
* * * * * *
61453 ACATAAATAATTGTTTTATGACAAAACAAAAGGTTATAATGACT-TGAAATATATAATTGTTTAA
60 ACAAAAATAATTGTTTTATGACAAAACAAAAGGTTATAA-CAATATGAAATAAATAATTATTCAA
* * *
61517 ATAGCCATAATTATTTGAACTAGTTCA
124 ATAGCCTTAACTAATTGAACTAGTTCA
61544 GTAAACAGAT
Statistics
Matches: 263, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
174 2 0.01
175 37 0.14
176 58 0.22
177 45 0.17
178 1 0.00
180 2 0.01
181 114 0.43
182 4 0.02
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (175 bp):
CTTATTAATTTTCAAAATATTAATAAATTAGTATTACTTTATTCCAAAAAACTATATCAACAAAA
ATAATTGTTTTATGACAAAACAAAAGGTTATAACAATATGAAATAAATAATTATTCAAATAGCCT
TAACTAATTGAACTAGTTCAACAAACAAATTTATTTTTCAAATCT
Found at i:62157 original size:15 final size:17
Alignment explanation
Indices: 62137--62172 Score: 58
Period size: 15 Copynumber: 2.2 Consensus size: 17
62127 TTCAATCTCT
62137 TATTATTA-TTTAG-AA
1 TATTATTAGTTTAGCAA
62152 TATTATTAGTTTAGCAA
1 TATTATTAGTTTAGCAA
62169 TATT
1 TATT
62173 TTACTCCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 8 0.42
16 5 0.26
17 6 0.32
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.53
Consensus pattern (17 bp):
TATTATTAGTTTAGCAA
Found at i:62553 original size:181 final size:179
Alignment explanation
Indices: 61787--62780 Score: 857
Period size: 181 Copynumber: 5.6 Consensus size: 179
61777 TTATTTCTCC
* * * *
61787 ATTTTTGAAATATTGATAAAGTAATATTATTTTATTTTGGATAAGCTTTTATGAA-ATGAAACAA
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAATA-GAAACAA
* * * * *
61851 TTGTTTTATGATAAAACAAAAGGTCATAACAATTTTAAA-ATGATAATTGTTTAAATAGTCGTAA
65 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATA-GATAATTATTTAAATAGTCATAA
* * * ** * * *
61915 CTATTTAAACTTGTTTGGTAAACAAATTTATTTTTTAATTCCTTGCTTATTA
129 CTATTTGAACTCGGTTAATAAATAAATTTATTTTTTAATT-TTTACTTATTA
** * * *
61967 ATTTTCTG-AATATTAATAAAACAGTATTATTTTA-TTCGAATAAGCATGTATGAACT-G-AACA
1 ATTTT-TGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAA-TAGAAACA
* * * * *
62028 ATTATTTTATGACTAAACAAAAGGTCAGAATGATTTGAAATAGATAATTA-TTACAATAGTCTTA
64 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTA-AATAGTCATA
* * * *
62092 ACTATTTAAACTC-GTTCAACAAATACATTTATTTTTTCAATCTCTTA-TTATT-
128 ACTATTTGAACTCGGTT-AATAAATAAATTTATTTTTT-AAT-TTTTACTTATTA
* * ** * * * *** *
62144 A-TTTAG-AATATTATTAGTTTAGCAATATTTTACTCCAAATAAG-TTTGTATGGATAGAAACAA
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTT-TATGAATAGAAACAA
* * * * *
62206 TTGTTTTATGACAAAAC-AAAGATCATACCGATTT-AAGATATATAATTATTCAAATAAT-ATAA
65 TTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA-ATAGATAATTATTTAAATAGTCATAA
* * * * *
62268 CTATTTGAA-TTGGTTCAATAAATAAATATAGTTTTTAA-ATCT-CTTATTA
129 CTATTTGAACTCGGTT-AATAAATAAATTTATTTTTTAATTTTTACTTATTA
** * * * * *
62317 ATTTTCAAAATATTAATCAATTAGTATTAGTTTATTTTAAATAA-TTTTGTATGAATATAAACAA
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTT-TATGAATAGAAACAA
* * *
62381 TTGTTTTATTACAAAAC-AAAGGATCATAACAATTTGAAATAAATAATTATTTAAATAGTCATAA
65 TTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAA
* ** ** *
62445 TTATTTGAACTCACTTGGTAAACAAATTTATTTTTTAAATATTTTACTTATTA
129 CTATTTGAACTCGGTTAATAAATAAATTTATTTTTT-AAT-TTTTACTTATTA
* *
62498 CTTTTTGAAATTTTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAATAGAAACAAT
1 ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAATAGAAACAAT
* * * * * * *
62563 TGGTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATATTTGTTCAAATGGTCATAATT
66 TGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAACT
* * *
62628 ATTTTGAACGT-GTTTAAAAAATAAATTTATTTTATATATTTTTACTTATTA
131 A-TTTGAAC-TCGGTTAATAAATAAATTTATTTTTTA-ATTTTTACTTATTA
* * * *
62679 ATCTTTGGAATATTAGTAAATTTA-TATTATTTTA-TTTGAAATAAGCTTGTATGAATAGAAACA
1 ATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTTG-AATAAGCTTTTATGAATAGAAACA
* *
62742 ATTGTTTTATGGCAAAACAAAAGGTCATAACTATTTGAA
64 ATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
62781 CTTGTTTGGT
Statistics
Matches: 655, Mismatches: 124, Indels: 69
0.77 0.15 0.08
Matches are distributed among these distances:
172 6 0.01
173 1 0.00
174 6 0.01
175 118 0.18
176 73 0.11
177 57 0.09
178 90 0.14
179 24 0.04
180 34 0.05
181 208 0.32
182 37 0.06
183 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
ATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAATAGAAACAAT
TGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTTAAATAGTCATAACT
ATTTGAACTCGGTTAATAAATAAATTTATTTTTTAATTTTTACTTATTA
Found at i:62795 original size:145 final size:145
Alignment explanation
Indices: 62613--62926 Score: 330
Period size: 146 Copynumber: 2.1 Consensus size: 145
62603 GATATTTGTT
* * * * *
62613 CAAATGGTCATAATTATTTTGAACGTGTTTAAAAAATAAATTTATTTTATATAT-TTTTACTTAT
1 CAAAAGGTCATAA-TA-TTTGAACGTGTTTAAAAAATAAATTCATTTTATAAATCTCTTACTCAT
* * * * * *
62677 TAA-TCTTTGGAATATTAGTAAATTTA-TATTATTTTATTT-GAAATAAGCTTGTATGAATAGAA
64 TAAGT-TTTAGAATAGTAAT-AAGTTAGTATTATTTTATTTCG-AATAAGCCTATATGAATAGAA
*
62739 ACAATTGTTTTATGGCAAAA
126 ACAATTGTTTTATGACAAAA
* *** * *
62759 CAAAAGGTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATT
1 CAAAAGGTCATAA-TATTTGAACGTGTTTAAAAAATAAATTCATTTTATAAATCTCTTACTCATT
* * *
62824 AAGTTTTAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATATAA
65 AAGTTTTAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAA
**
62889 TTGTTTTATGATGAAA
130 TTGTTTTATGACAAAA
62905 CAAAAGGTCATAATGATTTGAA
1 CAAAAGGTCATAAT-ATTTGAA
62927 ATAGATAATT
Statistics
Matches: 139, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
145 35 0.25
146 102 0.73
147 2 0.01
ACGTcount: A:0.38, C:0.07, G:0.12, T:0.43
Consensus pattern (145 bp):
CAAAAGGTCATAATATTTGAACGTGTTTAAAAAATAAATTCATTTTATAAATCTCTTACTCATTA
AGTTTTAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAAT
TGTTTTATGACAAAA
Found at i:63038 original size:327 final size:326
Alignment explanation
Indices: 62438--63107 Score: 803
Period size: 327 Copynumber: 2.0 Consensus size: 326
62428 TATTTAAATA
* * * *
62438 GTCATAATTATTTGAACTCACTTGGTAAACAAATTTATTTTTTAAATATTTTACTTATTACTTTT
1 GTCATAACTATTTGAACTCACTTGGTAAACAAATTCATTTTTTAAATATCTTACTCATTACTTTT
* ** * * *
62503 TGAAATTTTAATAAATTAGTATTATTTTATTTTGAATAAGCTTTTATGAATAGAAACAATTGGTT
66 AGAAATAGTAATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGGTT
* * *
62568 TATGACAAAACAAAAGGTCATAATGATTTGAAATAGATATTTGTTCAAATGGTCATAATTATTTT
131 TATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGT-ATAATTATTTT
* * * * *
62633 GAACGTGTTTAAAAAATAAATTTATTTTATATATTTTTACTTATTAATCTTTGGAATATTAGTAA
195 GAACGTGTTCAAAAAACAAATTTATTTTATAAATTTTTACTTATTAATCTTTGAAATATTAATAA
* ** * *
62698 ATTTATATTATTTT-ATTTGAAATAAGCTTGTATGAATAGAAA-CAATTGTTTTATGGCAAAACA
260 ATTAATATTATTTTAATTTG-AATAAGCTAATATGAACA-AAAGCAATTGTTTTATGACAAAACA
62761 AAAG
323 AAAG
*** * * * *
62765 GTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAAGTTT
1 GTCATAACTATTTGAACTCACTTGGTAAACAAATTCATTTTTTAAATATCTTACTCATT-ACTTT
* * * * *
62830 TAG-AATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATATAATTGTT
65 TAGAAATAGTAATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGGT
** * *
62894 TTATGATGAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAGATAGT-T-ATTACTCT
130 TTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTATAATTA-T-T
* * * * *
62957 TTGAACTTGTTCGATAAACATATTTATTTTTTAAATCTTTTACTTATTAAT-TGTTGAAATATTA
193 TTGAACGTGTTCAAAAAACAAATTTATTTTATAAAT-TTTTACTTATTAATCT-TTGAAATATTA
* *
63021 ATAAATTAATGTTATTTTAATTTGAATAAGCTAATATGAACAAAAGTAATTGTTTTATGACAAAA
256 ATAAATTAATATTATTTTAATTTGAATAAGCTAATATGAACAAAAGCAATTGTTTTATGACAAAA
63086 CAAAAG
321 CAAAAG
*
63092 GTCATAACAATTTGAA
1 GTCATAACTATTTGAA
63108 ATAGATAATT
Statistics
Matches: 289, Mismatches: 47, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
324 4 0.01
325 2 0.01
326 33 0.11
327 239 0.83
328 11 0.04
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.43
Consensus pattern (326 bp):
GTCATAACTATTTGAACTCACTTGGTAAACAAATTCATTTTTTAAATATCTTACTCATTACTTTT
AGAAATAGTAATAAATTAGTATTATTTTATTTCGAATAAGCCTATATGAATAGAAACAATTGGTT
TATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTATAATTATTTTG
AACGTGTTCAAAAAACAAATTTATTTTATAAATTTTTACTTATTAATCTTTGAAATATTAATAAA
TTAATATTATTTTAATTTGAATAAGCTAATATGAACAAAAGCAATTGTTTTATGACAAAACAAAA
G
Found at i:63127 original size:16 final size:17
Alignment explanation
Indices: 63106--63138 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
63096 TAACAATTTG
63106 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
63122 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
63139 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:63146 original size:19 final size:18
Alignment explanation
Indices: 63101--63147 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
63091 GGTCATAACA
63101 ATTTGAAATAG-ATAATT
1 ATTTGAAATAGTATAATT
*
63118 A-TTCAAATAGTCATAATT
1 ATTTGAAATAGT-ATAATT
63136 ATTTGAAATAGT
1 ATTTGAAATAGT
63148 TTTGTAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 8 0.32
17 1 0.04
18 7 0.28
19 9 0.36
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTATAATT
Found at i:63158 original size:181 final size:181
Alignment explanation
Indices: 62765--63159 Score: 460
Period size: 181 Copynumber: 2.2 Consensus size: 181
62755 AAAACAAAAG
* * *
62765 GTCATAACTATTTGAACTTGTTTGGTAAATAGATTCATTTTTTAAATCTCTTACTCATTAAGTTT
1 GTCATAACTATTTGAACTTGTTTCGTAAACATATTCATTTTTTAAATCTCTTACTCATTAAGTTT
* * ** *
62830 TAGAATAGTAATAAGTTAGTATTATTTTATTTCGAATAAGCCTATATGAATTGATATAATTGTTT
66 TAGAATAGTAATAAATTAATATTATTTTATTTCGAATAAGCCTATATGAATCAAAATAATTGTTT
** ** * *
62895 TATGATGAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTTAGATA
131 TATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATA
* * * * * *
62946 GTTATTACTCTTTGAACTTG-TTCGATAAACATATTTATTTTTTAAATCTTTTACTTATTAA-TT
1 GTCATAACTATTTGAACTTGTTTCG-TAAACATATTCATTTTTTAAATCTCTTACTCATTAAGTT
* *
63009 GTT-GAAATATTAATAAATTAATGTTATTTTAATTT-GAATAAG-CTAATATGAA-CAAAAGTAA
65 -TTAG-AATAGTAATAAATTAATATTATTTT-ATTTCGAATAAGCCT-ATATGAATCAAAA-TAA
63070 TTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATA
125 TTGTTTTATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATA
* * * *
63127 GTCATAATTATTTGAAATAGTTTTGTAAACATA
1 GTCATAACTATTTGAACTTGTTTCGTAAACATA
63160 ATTGTTATGA
Statistics
Matches: 178, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
180 10 0.06
181 161 0.90
182 7 0.04
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.42
Consensus pattern (181 bp):
GTCATAACTATTTGAACTTGTTTCGTAAACATATTCATTTTTTAAATCTCTTACTCATTAAGTTT
TAGAATAGTAATAAATTAATATTATTTTATTTCGAATAAGCCTATATGAATCAAAATAATTGTTT
TATGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATTATTCAAATA
Found at i:63374 original size:181 final size:179
Alignment explanation
Indices: 63164--65889 Score: 1756
Period size: 181 Copynumber: 15.1 Consensus size: 179
63154 AACATAATTG
* * * * *
63164 TTATGACTTTTTATTTTGTAATAAAATAATTGTTTCTATTCATACAAGCTTATTCGGATTAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * *
63229 AATATTAATTTACTAATATTTTGACAATTAATAAGTGAAAGATTTAAAAAATAAATATGTTTACC
66 AATACTAATTTATTAATATTTTGAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTACC
* * *
63294 ATACAAGTTCAAATAGTTAAGACTATTTGAATAATTATCTATTTCAAATAA
130 A-ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * *
63345 TTGTGACCTTTTATTTTGTAATGAAATAATTGTTTC-AGTTAACATAAGCTTATTTGAAATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAAA
* * ***** * * * *
63409 TAGCT-CTATTTTATTAATACACCAAAAATTAATGAGTAAGAGAATTAAAAAATGAATCTGTTTA
65 TA-ATACTAATTTATTAATATTTTGAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGTTTA
* * * * *
63473 TCGAACAAGTTCAAATAGTTATGACTATCTAAATAATTATCTATTTCAAAACA
128 -CCAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * *
63526 TTATGACCATTTGTTTTATCATAAAATAATTAGGTT-TGTTCATGCAAGCTTATTTTG-AATAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATT-GTTTCTATTCATACAAGCTTA-TTCGAAATAAA
* * *** * * *
63589 ATAATA-TAAATTTATTAAAACTCCAAAAATTAATAAATAAAAATTTGAAAAATAAATATGTTTT
64 ATAATACT-AATTTATTAATATTTTGAAAATTAATAAGTAAAGATTTAAAAAATAAATATG-TTT
*** *
63653 TTGAACACA-TT-TAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
127 ACCAACA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* ** ** * *
63705 TTATAACAATTTGTTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTATTCAAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * * *
63770 AATATTAATTTATTAATATTTAT-AAAATTTATGAGTAAAAGATTTAAATAATAAATTTGTTTAC
66 AATACTAATTTATTAATATTT-TGAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTAC
* * * * *
63834 CGAGCAA-CTCAAATAGTTATTACTATTTGAACAATTATATATTTCAAATCT
129 C-AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * *
63885 TTATGATCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTGGGAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * * *
63950 AATACTAATTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTACC
66 AATACTAATTTATTAATATTTTGAAAATTAATAAG-TAAAGATTTAAAAAATAAATATGTTTACC
* * * * * ** * **
64015 GAATAAGTTTAAATAGTCATGTCCATTTGAACTGTTATTTATTTCAAATGG
130 -AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
** * * * **
64066 TTACAACATTTTGTTTTATTATAAAATAATTGTTTCTATTCATACAAAATTATTC-AGAATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGA-AATAAAA
* * *
64130 TAATA-TCAATTTATTACTATTTTGAAAATTAATAAG----GATTT-AAAAATAAATGTGTTTTC
65 TAATACT-AATTTATTAATATTTTGAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTAC
* * * * *
64189 TAA-AGCAGTTCAAATATTTAAGACTATTAGAACAATTATCTA-TTCAAATTA
129 CAACA--AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * * *
64240 TTCTGATCTTTTGTTTAGTCAAAAAATAATTGTTTCTGTTCATACATGCTTATTCAAAATATAGT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * ** * *
64305 AATACTAATTTATTAAAATTTAGAAAATTAATAAG-AAA-TTTTTTAAAA-AAATCTATTTACCG
66 AATACTAATTTATTAATATTTTGAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACC-
* * *
64367 AATAAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTAAAATCA
130 AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * *
64417 TTATGACCTTTT-TAGTTTATCATAAAACAACTATTTC-AGTACATAAAAG-TTTTTCCAAAATA
1 TTATGACCTTTTGT--TTTGTCATAAAATAATTGTTTCTA-TTCATACAAGCTTATT-CGAAATA
* ** * * ** *
64479 AAATAATATTGCTTTATTAAT-TTTTCAAAAATTAAGAAGT-TGGAGTTTTAAAAATAAAT-TAG
62 AAATAATACTAATTTATTAATATTTT-GAAAATTAATAAGTAAAGA-TTTAAAAAATAAATAT-G
* * * * *
64541 TTTATCAA-ATTA-TTCAAATAATTATGGCCATTTGAATAATTATCTATTTCAAATC-
124 TTTACCAACA--AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * *
64596 --AT----TTTTGTTTTGCCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAATAAAA
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCT-ATTCATACAAGCTTATTCGAAATAAAA
* ** * * *
64654 TAATACTAATTTACTAATATTTCAAAAACTAAT-A--AAAGATTTAAAAAATTAATCTGTTTACT
65 TAATACTAATTTATTAATATTTTGAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTAC-
* * **
64716 AAACCAAG-TCAAATAGTTATGACTATTTGAACAATTATATATTTCAAATTG
129 CAA-CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * *
64767 TTATAACCTTTTGTTATCTCATAAAATAATTATTTCTATTCACACAAGTTTATTTGAACTAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
** * * ** * *
64832 AATACTAATACAATAATATTCTGAAAATTAATAACCAAGAGATTTAAAAAATAAATTTATTTACT
66 AATACTAATTTATTAATATTTTGAAAATTAATAAGTAA-AGATTTAAAAAATAAATATGTTTAC-
* * * * ** * * * *
64897 GAACTAGTTCAAATATTTAAGGTTATATGAACAATTCTTTATTTTAAATCA
129 CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * * * * *
64948 TTATGACCTTTTGTTTTGTCGTAAAACAATT-TTTTTCATTTCTTAGTAA-CTTATTTGGAATAG
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCT-A-TTCATA-CAAGCTTATTCGAAATAA
* * * * * * *
65011 AGTAAAACAAATTTATTAATA-TTTCAAAACTTAATAAGCAAAAGATTTAAAAAACAATTCA-GT
63 AATAATACTAATTTATTAATATTTTGAAAA-TTAATAAG-TAAAGATTTAAAAAATAAAT-ATGT
* * * * *
65074 TTGCCTAACCAGTTCAAATAATTATGACTATTTGAACAATTATCCATTTCAAATCG
125 TTACC-AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
** * * * * * * * *
65130 TTATGTTCTTTTATTTTGTCATAAAACAAATGTTTTTGTACATATAAGTTTATTCGAAATAAAAT
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
* * * *
65195 AATATTAATTTATTAATATTTTGAAAATTAAGAAGTAAGAAATTTAAAAAGTAAA-ATTGTTTAC
66 AATACTAATTTATTAATATTTTGAAAATTAATAAGTAA-AGATTTAAAAAATAAATA-TGTTTAC
* * * * * *
65259 TAAACTAGTTCAATTAGTTATAACTATTTAAACAATTATTTATTTCAAATCA
129 -CAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * *
65311 TTATGA-CTATTTGTATTGTCATAAAATAATTATTTATGTTCATAC-AGTCTTATTCGAAATAAA
1 TTATGACCT-TTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAG-CTTATTCGAAATAAA
* *
65374 GTAATACTAATTTATCAATATTTTG-AAATTAATAAGTAATAGATTTAAAAAATAAATCAATTGG
64 ATAATACTAATTTATTAATATTTTGAAAATTAATAAGTAA-AGATTTAAAAAATAAAT--A-T-G
* * * * * *
65438 CCTTACC-A-ATG-T-AAATAGTTATGACTATTTAAATAATTATCTATTTCTAATCG
124 -TTTACCAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* * * * ** *
65491 TTATGACCTTTTGTTTTATCACAAAATAATTGTTTC-ATCACAAAACAATTATTTCTATCTGTAC
1 TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTAT-TC-ATACAA--GCTTAT-TC-G-A-
* *
65555 TAGCTTATTTGAAATAATA-TAATTCTATTTTATTAATATTTTAAAAATTAATAAG---AGATTT
58 -A----A--TAAAATAATACTAATT-TA--TTA---ATATTTTGAAAATTAATAAGTAAAGATTT
* * * ** * * *
65616 AAAAAATGAATTTGTTTATCGAACAAGCACAAATAATTATGACTATTTGAATAATTATCAATTTC
110 AAAAAATAAATATGTTTA-CCAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
*
65681 TAATCA
174 AAATCA
* * * * ** * *
65687 CTATAACCCTTTGTATTGTCCCAAAACAAAAT-TTTCTATTCATACAAGCTTATTTC-AAATAAA
1 TTATGACCTTTTGTTTTGTCATAAAA-TAATTGTTTCTATTCATACAAGCTTA-TTCGAAATAAA
* * ** * * * * * *
65750 ATTATACAAATTTATTAATATTCAGACAACTAATCAGTAAAAGATTTAAAAAAAAAATCTATTTA
64 ATAATACTAATTTATTAATATTTTGAAAATTAATAAGT-AAAGATTTAAAAAATAAATATGTTTA
* * * * * **
65815 TCAAATAAGTTTAAATAATTATGACTATTTGAACAATTATTTATTTCAAATTG
128 -CCAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
* *
65868 TTATGACTTTTTGTTTTCTCAT
1 TTATGACCTTTTGTTTTGTCAT
65890 GACACAATTT
Statistics
Matches: 1970, Mismatches: 447, Indels: 256
0.74 0.17 0.10
Matches are distributed among these distances:
169 17 0.01
170 42 0.02
171 1 0.00
172 54 0.03
173 13 0.01
174 89 0.05
175 44 0.02
176 52 0.03
177 115 0.06
178 62 0.03
179 119 0.06
180 360 0.18
181 682 0.35
182 149 0.08
183 20 0.01
184 4 0.00
185 5 0.00
186 1 0.00
188 2 0.00
190 1 0.00
191 3 0.00
192 3 0.00
193 11 0.01
194 13 0.01
195 5 0.00
196 80 0.04
197 5 0.00
199 7 0.00
200 11 0.01
ACGTcount: A:0.41, C:0.10, G:0.08, T:0.41
Consensus pattern (179 bp):
TTATGACCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAAT
AATACTAATTTATTAATATTTTGAAAATTAATAAGTAAAGATTTAAAAAATAAATATGTTTACCA
ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCA
Found at i:65525 original size:19 final size:19
Alignment explanation
Indices: 65501--65545 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 19
65491 TTATGACCTT
* *
65501 TTGTTTTATCACAAAATAA
1 TTGTTTCATCACAAAACAA
65520 TTGTTTCATCACAAAACAA
1 TTGTTTCATCACAAAACAA
*
65539 TTATTTC
1 TTGTTTC
65546 TATCTGTACT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.42
Consensus pattern (19 bp):
TTGTTTCATCACAAAACAA
Found at i:66668 original size:17 final size:16
Alignment explanation
Indices: 66628--66677 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
66618 ATCTATATAG
66628 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
66643 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
66657 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
66675 TTA
1 TTA
66678 ATAAAAACTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:67976 original size:181 final size:180
Alignment explanation
Indices: 67068--67972 Score: 693
Period size: 181 Copynumber: 5.0 Consensus size: 180
67058 TTAAATCTCT
* * * * *
67068 TATTAATAAATTTA-TTTTATTTTATTCTGAATAAGC-TAGTATGAATTGAAAAAATTATTTTAT
1 TATTAATAAA-TTAGTATTATTTTATT-TTAATAAGCTTA-TATGAACT-AAACAATTGTTTTAT
* * * *
67131 GACAAAA-AAAAAGATCATAATGATTTAAAATAGATAATTGTTCATACT-GTCTTAACTATTTAA
62 GACAAAACAAAAAG-TCATAATGATTTTAAATAGATAATTGTTCA-AATAGTCATAACTATTTGA
* * * * *
67194 ACTGGTTCAG-CAAACAAATTTATTTTTT-AAA--TC-T-CTTATTAA-TTTTCAGAG
125 ATTGATT-AGATAAACAAATTTATTTTTTCAAATCTCTTACTTATTAATTTTTGA-AA
* * ** * * * * *
67245 TATTATTAGACAAGTATTATTTTATTTCAAATAAGCTTGTATGAACATGAATAATTGTTTTATAA
1 TATTAATAAATTAGTATTATTTTATTT-TAATAAGCTTATATGAAC-TAAACAATTGTTTTATGA
* * * * * *
67310 CAAAACAAAAAATGTTTATTTTTAAATAACTGATTTAAACTATACATTTGTTCAAGTAGTCATAA
64 CAAAAC-AAAAA-G-TCA----T-AATGA-T--TTTAAA-TAGATAATTGTTCAAATAGTCATAA
* * * * * * *
67375 CTATTTAAATGGGTTCGATAAATAAATTTATTTTTT-AAATTTCTTACTTATTAACTTTTGAAA
117 CTATTTGAATTGATTAGATAAACAAATTTATTTTTTCAAATCTCTTACTTATTAATTTTTGAAA
* * ** *
67438 GATTAATAAATTAGTATTATTTTATTCT-A-AAGCTTATATGATAAAAAACAATTGTTATATGAC
1 TATTAATAAATTAGTATTATTTTATTTTAATAAGCTTATATGA-ACTAAACAATTGTTTTATGAC
* * * * * * * * * * *
67501 CAAACAAAAGGTAATATTGATTTCAAATAGATAATTGTTGAAATAGCCATAATTATTAGAAGTAA
65 AAAACAAAAAGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGA
* * * * *
67566 TTTGATAAACAGAA-TCA-TTTTTCAAATCACTTACTTATTAATTTTAGGAA
130 TTAGATAAACA-AATTTATTTTTTCAAATCTCTTACTTATTAATTTTTGAAA
* * * *
67616 TGTTAATAAATTACTATTATTTTATTTCTAATAAGCTTGTATGAACTAAAACAATTGTTTTACGA
1 TATTAATAAATTAGTATTATTTTATTT-TAATAAGCTTATATGAACT-AAACAATTGTTTTATGA
*
67681 CAAAAC-AAAAGATCATAATGATTTTAAATAGATAATTGTTCAAATAGTTATAACTATTTGAATT
64 CAAAACAAAAAG-TCATAATGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-T
* * *
67745 TG-TTA-AGTAAACAAATTAATTTTTTTAAA-CTCTTGCTTATTAATTTTTGAAA
127 TGATTAGA-TAAACAAATTTATTTTTTCAAATCTCTTACTTATTAATTTTTGAAA
* * * *
67797 TATTAATAAATTAGTATTATTTTATTTTAGATAAGCTTTTATGAACTAAACAATTATTTTTTGTC
1 TATTAATAAATTAGTATTATTTTATTTTA-ATAAGCTTATATGAACTAAACAATTGTTTTATGAC
*
67862 AAAACAAAAAGTCATAACGATTTTAAATA-ATAATTGTTCAAATAGTCATAACTATTTGAACTTG
65 AAAACAAAAAGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TTG
* * * * * *
67926 ATT-GGTAAATAGATTTATTTTTTCATATCTTTTGCTTATTAATTTTT
129 ATTAGATAAACAAATTTATTTTTTCAAATCTCTTACTTATTAATTTTT
67973 TGAACGTTAA
Statistics
Matches: 574, Mismatches: 114, Indels: 77
0.75 0.15 0.10
Matches are distributed among these distances:
176 2 0.00
177 55 0.10
178 83 0.14
179 63 0.11
180 70 0.12
181 149 0.26
182 12 0.02
183 1 0.00
184 1 0.00
185 4 0.01
186 1 0.00
187 2 0.00
188 9 0.02
189 53 0.09
190 29 0.05
191 4 0.01
192 1 0.00
193 30 0.05
194 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
TATTAATAAATTAGTATTATTTTATTTTAATAAGCTTATATGAACTAAACAATTGTTTTATGACA
AAACAAAAAGTCATAATGATTTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGAT
TAGATAAACAAATTTATTTTTTCAAATCTCTTACTTATTAATTTTTGAAA
Found at i:68626 original size:181 final size:177
Alignment explanation
Indices: 68273--68871 Score: 574
Period size: 181 Copynumber: 3.4 Consensus size: 177
68263 AGCTACAACT
* *
68273 ATTTGAACAATTGTCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTAG
1 ATTTGAACAATTATCTATTTAAAATCATTATGACCTTTT-TTTTGTCATAAAACAATTGTTTTAG
*
68338 TTCATACAAGCTTATTCAAAATAAAATAAA-ACTAATTTATTAATATTCTAAAAATTAATAACTA
65 TTCAT-CAAACTTATTCAAAATAAAA-AAATACTAATTTATTAATATTCTAAAAATTAATAA-TA
* ** * * * * *
68402 AGTGATTTAAAAAGTTAATTTGTTTA-TCGAATCAGTACAAATAGTCATGTTC
127 AGAGATTTAAAAA-AAAATTAGTTTACT-AAATAAGTTCAAATAGTTATGTTC
* * * *
68454 ATTTGAACAGTTATCTATTTCAAATCATTATGACCTTTTTTTTTTCATAAAACAATTCTTTCT-G
1 ATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTTTTTGTCATAAAACAATTGTTT-TAG
* * * * *
68518 TTCATGCAAAATTATTCAAAATAAAAAAATACTGATTTTATTAACATTCTGAAAATTAGTAAGTA
65 TTCAT-CAAACTTATTCAAAATAAAAAAATACT-AATTTATTAATATTCTAAAAATTAATAA-TA
**
68583 AGAGATTTGAAAAAAAAATCCGTTTACTAAATAAGTTCAAATAGTTATGATT-
127 AGAGATTT-AAAAAAAAATTAGTTTACTAAATAAGTTCAAATAGTTATG-TTC
* * * *
68635 ATTTGAACAATTTTCTATTTAAAATTATTATGAACTTTTTGTTTTATCATAAAACAATTGTTTTA
1 ATTTGAACAATTATCTATTTAAAATCATTATG-ACCTTTT-TTTTGTCATAAAACAATTGTTTTA
* * * * * *
68700 G-T-ATTAAAGCTTATGCAAAATAAAATAATACTACTTTATTAATATT-TCAAAA--ACTAATAA
64 GTTCATCAAA-CTTATTCAAAATAAAAAAATACTAATTTATTAATATTCTAAAAATTAATAATAA
* * * * * *
68760 GAGATTTAAAAAATAAATTAGCTTACCAAATTAGATCAAATAATTATG-GC
128 GAGATTTAAAAAA-AAATTAGTTTACTAAATAAGTTCAAATAGTTATGTTC
* * * *
68810 -TTTGAATAATTATCTACTTCAAATCATTATTG-CCTTTCATTTTGTCATAAAACAATTGTTTT
1 ATTTGAACAATTATCTATTTAAAATCATTA-TGACCTTT-TTTTTGTCATAAAACAATTGTTTT
68872 CCAACATACA
Statistics
Matches: 350, Mismatches: 54, Indels: 36
0.80 0.12 0.08
Matches are distributed among these distances:
173 26 0.07
174 24 0.07
175 8 0.02
176 37 0.11
177 4 0.01
179 8 0.02
180 61 0.17
181 145 0.41
182 16 0.05
183 21 0.06
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
ATTTGAACAATTATCTATTTAAAATCATTATGACCTTTTTTTTGTCATAAAACAATTGTTTTAGT
TCATCAAACTTATTCAAAATAAAAAAATACTAATTTATTAATATTCTAAAAATTAATAATAAGAG
ATTTAAAAAAAAATTAGTTTACTAAATAAGTTCAAATAGTTATGTTC
Found at i:69053 original size:19 final size:19
Alignment explanation
Indices: 69029--69068 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
69019 TATTTATCAA
* *
69029 ACCAGTTTAAATAATTATT
1 ACCAGTTCAAACAATTATT
69048 ACCAGTTCAAACAATTATT
1 ACCAGTTCAAACAATTATT
69067 AC
1 AC
69069 TATTTGAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.35
Consensus pattern (19 bp):
ACCAGTTCAAACAATTATT
Found at i:71220 original size:177 final size:178
Alignment explanation
Indices: 70465--72214 Score: 993
Period size: 181 Copynumber: 9.6 Consensus size: 178
70455 TAGATAATTG
* * * * *
70465 TTATGACTTTTTGTTTTGCCATAAAAGAATTGTTTCTATTCA-ATAAGCTTATTCGGATTAAAAT
1 TTATGAC-TTTTGTTTTGTCATAAAACAATAGTTTCTATTCATATAAGCTTATTCAGAATAAAAT
** * *
70529 AATATTAATTTATTAATATTTTGATAATTAATAAGTAAAAGATTTAAAAAATAAATAT-TTTACT
65 AATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGA-TT-AAAAATAAATCTGTTTACT
* * *
70593 GAATAAGTTCAAATAG-TCTGACTATTTGAATAATTAACTATTTCAAATCA
128 GAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * *
70643 TT-TGACCTTTTGTTTTGTAATAAAACAATTA-TTTC-AGTTAATATAA-ATTATTTAAAATAAA
1 TTATGA-CTTTTGTTTTGTCATAAAACAA-TAGTTTCTA-TTCATATAAGCTTATTCAGAATAAA
* * * * * * * *
70704 ATAATACTAATTTATTAATATTTTAAAAATGAATGAGTAAGAGAAATAAAAAAAAATGAATTTGT
63 ATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAA-A-AGAT---TAAAAATAAATCTGT
* * *
70769 TTACTGAAAAAGTTCAAATAGTTATGATTATCT-AA-ACATTATCTATTTCAACA-CA
123 TTACTGAACAAGTTCAAATAGTTATGACTATTTGAATA-ATTATCTATTTCAA-ATCA
* * * ** ***
70824 TTATGACTTTTTGTTTTGTCAGAAAGCAACAGGATCTATTCATGA-AAGCTTATATTTTAATAAA
1 TTATGAC-TTTTGTTTTGTCATAAAACAATAGTTTCTATTCAT-ATAAGCTTAT-TCAGAATAAA
* * * * *
70888 ATAATATAAATTTATTAATA-TTCAAAAAATTAATAAATAATAA-TTTAAACAATAAATTTATTT
63 ATAATATTAATTTATTAATATTTC-AAAAATTAATAAGTAA-AAGATTAAA-AATAAATCT-GTT
** * * * * *
70951 TTTTGAACATGTTTAAATAGTTATGACTATTTAAACAATTATCTATTTCAAATTA
124 TACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * *
71006 TTATTACTATTTGTTTTGTGATAAATCAATTGTTTCTATTCATACAAGCTTATTCAGAATAAAAT
1 TTATGACT-TTTGTTTTGTCATAAAACAATAGTTTCTATTCATATAAGCTTATTCAGAATAAAAT
* *
71071 AACATTAATTTATTAAAATTTCAAAAATTAATAAGTAAAAGATT-AAAA-AAATCTGTTTACT-A
65 AATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTAAAAATAAATCTGTTTACTGA
* * *
71133 AGCGAGTTCAAATAGTTATGACTATTTGAATAAATATTTATTTCAAATCA
130 A-CAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * *
71183 TTATGATCTTTTCTTTGGTCATAAAACAATAGTTTCTATTCATAAAAGTTTATTC-GAAATAAAA
1 TTATGA-CTTTTGTTTTGTCATAAAACAATAGTTTCTATTCATATAAGCTTATTCAG-AATAAAA
*** *
71247 TAATATTAATTTATTAATA-TTCTAAAAATTAATAAGTTGGAGATTTAAAAAATAAATCTATTTA
64 TAATATTAATTTATTAATATTTC-AAAAATTAATAAGTAAAAGA-TT-AAAAATAAATCTGTTTA
* * * *
71311 GC-AAACAAGTTCAAATAGTCATGTCCATTTGAACT-ATTATCTATTTCAAATCA
126 -CTGAACAAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTATTTCAAATCA
* * * * **
71364 TTATGACATTTTGTTTTGTTGTAAAATAATACCAATGATTTAGAATAATTGGTATTCATACAAAA
1 TTATGAC-TTTTG--TT-TTGT--CATAA-AAC-A--A--TAG--T--TT-CTATTCATATAAGC
* *
71429 TTATTCA-AATAAAATAATACTAATTTATTACTATTTCAAAAATTAATAAG-----GATTTAAAA
49 TTATTCAGAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGA-TTAAAA
* * * * * * *
71488 ATAAATGTGTTT-GTCGAATC-AGTTCAAATAGTTAAGACTATTAGAACAATTATCTGTTTCAAC
113 ATAAATCTGTTTACT-GAA-CAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA
71551 TCA
176 TCA
** * * * * * ** * *
71554 TTCA-GACTTTTTGTTTAATCATAAAATAATTGTTT-TAGCTCATACATGCCAATT-TGAAATAT
1 TT-ATGAC-TTTTGTTTTGTCATAAAACAATAGTTTCTA-TTCATATAAGCTTATTCAG-AATAA
* * * * *
71616 AATAATACTAATTTATTAACATTTTAAAGAATTAATAGGCAAGAA-ATTAAAAAACATAAAT-TA
62 AATAATATTAATTTATTAATATTTCAAA-AATTAATAAGTAA-AAGATT--AAAA-ATAAATCT-
* * * * *
71679 GTTTACTGAACAAGTTAAAATTGTTATGACTATTTGAACAATTATATATTTAAAATCA
121 GTTTACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * *
71737 TTATGACCCTTTTATGTTATCATAAAACAATTGTTTC-AGTGCATAAAAGCTTATTC-GAA-ACA
1 TTATGA--CTTTTGTTTTGTCATAAAACAATAGTTTCTA-TTCATATAAGCTTATTCAGAATA-A
* * * * * *
71799 AACTAATATT-ACTTATTAATATTTAAAAAATTGATAAGTTAGAGATTTTAAATATAAAT-TAGT
62 AA-TAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGA--TTAAAAATAAATCT-GT
* * * * * * * *
71862 TTA-TCAA-ATCAGTCCAAATAATTA-CAGCAATTTAAATAATTAACTATATCAAATCA
123 TTACTGAACA--AGTTCAAATAGTTATGA-CTATTTGAATAATTATCTATTTCAAATCA
* * * * * *
71918 TTATGAACTTTTGTTTTATCATAAACCAACT-G-TTCTTTTATCATACAAGCCTATT-TGAATTA
1 TTATG-ACTTTTGTTTTGTCATAAAACAA-TAGTTTC-TAT-TCATATAAGCTTATTCAGAA-TA
* * ** *** *
71980 AAATAAAACTAATTTCCTAATATTTCAAAAATTAATAAGTGTGAGATTTAAAAAATAAATCTATT
61 AAATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGA-TT-AAAAATAAATCTGTT
** * * * * * *
72045 TACCAAACCAGTTTAAATAGTTACGACTATTTGAACAATTATATATTTCAAATTA
124 TACTGAACAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
* * * * * * * *
72100 TTATAACCTTTTGTTATGTCATAAAACAATTA-TTTATATTCAAACAAGTTTATTAAAAATAAAA
1 TTATGA-CTTTTGTTTTGTCATAAAACAA-TAGTTTCTATTCATATAAGCTTATTCAGAATAAAA
* * * *
72164 TAATACT-ATTGTAATAATA-TTCTAAAAATTAATAACTAAGAGATTTAAAAA
64 TAATATTAATT-TATTAATATTTC-AAAAATTAATAAGTAAAAGA-TTAAAAA
72215 ATTAAATAAA
Statistics
Matches: 1223, Mismatches: 235, Indels: 226
0.73 0.14 0.13
Matches are distributed among these distances:
173 2 0.00
174 10 0.01
175 31 0.03
176 16 0.01
177 203 0.17
178 19 0.02
179 13 0.01
180 66 0.05
181 300 0.25
182 231 0.19
183 94 0.08
184 89 0.07
185 5 0.00
186 4 0.00
187 4 0.00
188 3 0.00
190 64 0.05
191 7 0.01
192 3 0.00
194 1 0.00
196 39 0.03
197 19 0.02
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39
Consensus pattern (178 bp):
TTATGACTTTTGTTTTGTCATAAAACAATAGTTTCTATTCATATAAGCTTATTCAGAATAAAATA
ATATTAATTTATTAATATTTCAAAAATTAATAAGTAAAAGATTAAAAATAAATCTGTTTACTGAA
CAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCA
Found at i:71568 original size:190 final size:194
Alignment explanation
Indices: 71219--71569 Score: 432
Period size: 190 Copynumber: 1.8 Consensus size: 194
71209 CAATAGTTTC
* *
71219 TATTCATAAAAGTTTATTCGAAATAAAATAATATTAATTTATTAATATTCTAAAAATTAATAAGT
1 TATTCATAAAAGATTATTCGAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAA--
* * * *
71284 TGGAGATTTAAAAAATAAATCTATTTAGCAAACAAGTTCAAATAGTCATGTCCATTTGAACTATT
64 -GGAGATTTAAAAAATAAATCTATTTAGCAAACAAGTTCAAATAGTCAAGACCATTAGAACAATT
71349 ATCTATTTCAAATCATTATGACATTTTGTTTTGTTGTAAAATAATACCAATGATTTAGAATAATT
128 ATCTATTTCAAATCATTATGACATTTTGTTTTGTTGTAAAATAATACCAATGATTTAGAATAATT
71414 GG
193 GG
*
71416 TATTCATACAAA-ATTATTC-AAATAAAATAATACTAATTTATTACTATT-TCAAAAATTAATAA
1 TATTCATA-AAAGATTATTCGAAATAAAATAATACTAATTTATTAATATTCT-AAAAATTAATAA
* * * * *
71478 -G-GATTT-AAAAATAAATGTGTTT-GTCGAATC-AGTTCAAATAGTTAAGACTATTAGAACAAT
64 GGAGATTTAAAAAATAAATCTATTTAG-C-AAACAAGTTCAAATAGTCAAGACCATTAGAACAAT
* * *
71538 TATCTGTTTCAACTCATTCA-GACTTTTTGTTT
127 TATCTATTTCAAATCATT-ATGACATTTTGTTT
71570 AATCATAAAA
Statistics
Matches: 134, Mismatches: 15, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
189 1 0.01
190 66 0.49
191 9 0.07
192 1 0.01
195 1 0.01
196 39 0.29
197 14 0.10
198 3 0.02
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (194 bp):
TATTCATAAAAGATTATTCGAAATAAAATAATACTAATTTATTAATATTCTAAAAATTAATAAGG
AGATTTAAAAAATAAATCTATTTAGCAAACAAGTTCAAATAGTCAAGACCATTAGAACAATTATC
TATTTCAAATCATTATGACATTTTGTTTTGTTGTAAAATAATACCAATGATTTAGAATAATTGG
Found at i:72442 original size:24 final size:25
Alignment explanation
Indices: 72390--72445 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 25
72380 AGATGTTTAC
72390 TTAATTATTATTATATATTTATATAA
1 TTAA-TATTATTATATATTTATATAA
*
72416 TTAATATTA-TATTTATTTATA-ATA
1 TTAATATTATTATATATTTATATA-A
72440 TTAATA
1 TTAATA
72446 ATTAATTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
23 1 0.04
24 18 0.64
25 5 0.18
26 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
TTAATATTATTATATATTTATATAA
Found at i:74117 original size:97 final size:96
Alignment explanation
Indices: 73971--74162 Score: 294
Period size: 97 Copynumber: 2.0 Consensus size: 96
73961 TTCAATATAC
* * * *
73971 ATTTAGTTTTATTCTTAGTTTTCCACATGGTATGAGAGCTAGGACTTTCTTTCCATTGCTCTTTC
1 ATTTAGTTTTACTCTTAGTTTTCCACATGATATGAGAGCCAGGACTTTCTTTCCATTGCCCTTTC
*
74036 CTAATTTGTCACATGGAAGGCTTCTTTCCTA
66 CTAATTTGTCACATGAAAGGCTTCTTTCCTA
* **
74067 ATTTAGTTTTACTCTTAGTTTTTCCATATGATATGAGAGCCAGGACTTTCTTTCTGTTGCCCTTT
1 ATTTAGTTTTACTCTTAG-TTTTCCACATGATATGAGAGCCAGGACTTTCTTTCCATTGCCCTTT
*
74132 CCTAATTTGTCACATGAAAGGCTTTTTTCCT
65 CCTAATTTGTCACATGAAAGGCTTCTTTCCT
74163 CTTCACCTAT
Statistics
Matches: 86, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
96 17 0.20
97 69 0.80
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (96 bp):
ATTTAGTTTTACTCTTAGTTTTCCACATGATATGAGAGCCAGGACTTTCTTTCCATTGCCCTTTC
CTAATTTGTCACATGAAAGGCTTCTTTCCTA
Found at i:74781 original size:21 final size:21
Alignment explanation
Indices: 74757--74819 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
74747 TAATAACCAA
74757 TAATTCATATTTAATTATTAT
1 TAATTCATATTTAATTATTAT
* * *
74778 TAATT-AAATTATAATAATTAA
1 TAATTCATATT-TAATTATTAT
* *
74799 TAATTC-TAATTAATTAATAT
1 TAATTCATATTTAATTATTAT
74819 T
1 T
74820 CCAAAATTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATTCATATTTAATTATTAT
Found at i:74803 original size:31 final size:31
Alignment explanation
Indices: 74768--74832 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
74758 AATTCATATT
* *
74768 TAATTATTATTAATTAA-ATTATAATAATTAA
1 TAATTATAATTAATTAATATTACAA-AATTAA
* *
74799 TAATTCTAATTAATTAATATTCCAAAATTAA
1 TAATTATAATTAATTAATATTACAAAATTAA
74830 TAA
1 TAA
74833 GTAAAAGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (31 bp):
TAATTATAATTAATTAATATTACAAAATTAA
Found at i:74814 original size:17 final size:17
Alignment explanation
Indices: 74768--74817 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
74758 AATTCATATT
*
74768 TAATTATTATTAATT-A
1 TAATTATAATTAATTAA
74784 -AATTATAA-TAATTAA
1 TAATTATAATTAATTAA
*
74799 TAATTCTAATTAATTAA
1 TAATTATAATTAATTAA
74816 TA
1 TA
74818 TTCCAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 5 0.17
15 8 0.28
16 7 0.24
17 9 0.31
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATTATAATTAATTAA
Found at i:75167 original size:11 final size:11
Alignment explanation
Indices: 75144--75180 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
75134 AAAATATATT
75144 ATATAATTTATA
1 ATATAA-TTATA
75156 ATATAATTATA
1 ATATAATTATA
75167 ATATAATTAATA
1 ATATAATT-ATA
75179 AT
1 AT
75181 TATATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATAATTATA
Found at i:75173 original size:16 final size:16
Alignment explanation
Indices: 75152--75200 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
75142 TTATATAATT
75152 TATAATATAATTATAA
1 TATAATATAATTATAA
* *
75168 TATAAT-TAATAATTA
1 TATAATATAATTATAA
*
75183 TATTA-ATAATTA-AA
1 TATAATATAATTATAA
75197 TATA
1 TATA
75201 TTATTGGTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 4 0.15
15 16 0.62
16 6 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATATAATTATAA
Found at i:75180 original size:30 final size:30
Alignment explanation
Indices: 75135--75204 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
75125 TTGTTTATTA
75135 AAATAT-ATTATATAATTTATAAT-ATAATT
1 AAATATAATTATATAA-TTATAATAATAATT
*
75164 ATAATATAATTA-ATAATTATATTAATAATT
1 A-AATATAATTATATAATTATAATAATAATT
75194 AAATAT-ATTAT
1 AAATATAATTAT
75205 TGGTTTTAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
28 4 0.11
29 12 0.33
30 16 0.44
31 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
AAATATAATTATATAATTATAATAATAATT
Found at i:75187 original size:23 final size:24
Alignment explanation
Indices: 75144--75192 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
75134 AAAATATATT
*
75144 ATATAATTTATAATATAATT-ATA
1 ATATAATTAATAATATAATTAATA
75167 ATATAATTAATAAT-TATATTAATA
1 ATATAATTAATAATATA-ATTAATA
75191 AT
1 AT
75193 TAAATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 2 0.09
23 16 0.70
24 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATATAATTAATAATATAATTAATA
Found at i:75194 original size:12 final size:11
Alignment explanation
Indices: 75130--75192 Score: 55
Period size: 12 Copynumber: 5.9 Consensus size: 11
75120 AACAATTGTT
75130 TATTAA-AATA
1 TATTAATAATA
75140 TATT-AT-ATA
1 TATTAATAATA
*
75149 -ATTTATAATA
1 TATTAATAATA
75159 TAATT-ATAATA
1 T-ATTAATAATA
75170 TAATTAATAATTA
1 T-ATTAATAA-TA
75183 TATTAATAAT
1 TATTAATAAT
75193 TAAATATATT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
8 3 0.07
9 6 0.13
10 7 0.15
11 12 0.26
12 15 0.33
13 3 0.07
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TATTAATAATA
Found at i:75540 original size:22 final size:21
Alignment explanation
Indices: 75501--75554 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 21
75491 GTTTATCATT
75501 ATTAATAGTTAATAATTATAA
1 ATTAATAGTTAATAATTATAA
* * *
75522 ATTAATATTATAATTATTATAT
1 ATTAATAGT-TAATAATTATAA
75544 ATTAAATAGTT
1 ATT-AATAGTT
75555 TTGTTATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
21 8 0.30
22 14 0.52
23 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (21 bp):
ATTAATAGTTAATAATTATAA
Found at i:75700 original size:16 final size:16
Alignment explanation
Indices: 75681--75715 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
75671 TAAATGTTCA
75681 AATAATAATATTA-TTT
1 AATAATAAT-TTAGTTT
75697 AATAATAATTTAGTTT
1 AATAATAATTTAGTTT
75713 AAT
1 AAT
75716 TATTATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AATAATAATTTAGTTT
Found at i:76462 original size:10 final size:11
Alignment explanation
Indices: 76441--76480 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
76431 ATGTTTAACA
*
76441 TAATTCATAAT
1 TAATTAATAAT
76452 TAATT-ATAAT
1 TAATTAATAAT
76462 TAATTAATAA-
1 TAATTAATAAT
76472 T-ATTAATAA
1 TAATTAATAA
76481 ATAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:76478 original size:13 final size:14
Alignment explanation
Indices: 76448--76490 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
76438 ACATAATTCA
*
76448 TAATTAATTATAAT
1 TAATTAATAATAAT
76462 TAATTAATAAT-AT
1 TAATTAATAATAAT
*
76475 TAATAAATAAATAAT
1 TAATTAAT-AATAAT
76490 T
1 T
76491 TATATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 13 0.52
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAATAATAAT
Found at i:76497 original size:17 final size:17
Alignment explanation
Indices: 76467--76501 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
76457 ATAATTAATT
76467 AATAATATTAATAAATA
1 AATAATATTAATAAATA
76484 AATAAT-TTATATAAATA
1 AATAATATTA-ATAAATA
76501 A
1 A
76502 TTTGATCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.18
17 14 0.82
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
AATAATATTAATAAATA
Found at i:77879 original size:18 final size:18
Alignment explanation
Indices: 77856--77910 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
77846 ATATTACATA
77856 TAATATTTTATGAATTAC
1 TAATATTTTATGAATTAC
*
77874 TAATA---TATGTA-TA-
1 TAATATTTTATGAATTAC
*
77887 TAATATTTTATAAATTAC
1 TAATATTTTATGAATTAC
77905 TAATAT
1 TAATAT
77911 ATGAATAACA
Statistics
Matches: 29, Mismatches: 3, Indels: 10
0.69 0.07 0.24
Matches are distributed among these distances:
13 5 0.17
14 2 0.07
15 5 0.17
16 4 0.14
17 2 0.07
18 11 0.38
ACGTcount: A:0.44, C:0.04, G:0.04, T:0.49
Consensus pattern (18 bp):
TAATATTTTATGAATTAC
Found at i:77891 original size:31 final size:31
Alignment explanation
Indices: 77853--77913 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
77843 ATTATATTAC
*
77853 ATATAATATTTTATGAATTACTAATATATGT
1 ATATAATATTTTATAAATTACTAATATATGT
77884 ATATAATATTTTATAAATTACTAATATATG
1 ATATAATATTTTATAAATTACTAATATATG
77914 AATAACAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (31 bp):
ATATAATATTTTATAAATTACTAATATATGT
Found at i:78731 original size:181 final size:179
Alignment explanation
Indices: 78366--79602 Score: 631
Period size: 181 Copynumber: 7.1 Consensus size: 179
78356 TACTATTAAA
* * * * * * *
78366 ACTAATTTATTAATACTT-CAAAA--AATTA-TAAGAGATTTAGAAAAT-AATTCTCTTTACCGA
1 ACTAATTTAATAATATTTACAAAATTAATAAGTAAGAAATTTAAAAAATAAATT-TGTTTA-CAA
* * ** * * * * *
78426 ACTAGTTCAAATAATTACAACTATTTGAACAATTATTTATTTCAAATCATTATTA-TTTTTTTTT
64 ACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATTT
* * * * * * *
78490 TGTCATAAAACAATTGTTTTTGTTAAGATAAGTTTGTTTAAAATAAAATAAT
129 TGTCATAAAACAATTG-TTCTGTTCATACAAGCTTATTTAGAATAAAATAAT
* * * ** *
78542 ACTAATTTATTAATATTTAGAAAATTAATTAGTAAGAGTTTTAAAAAGTAAATTTGTTTACCAAA
1 ACTAATTTAATAATATTTACAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTA-CAAA
* * * *
78607 CCATTTCAAATAGTTTTGACTATTTGAATAATTATCTATTTCAAATTGTTATAACCTTTTATTTT
65 CCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATTTT
* * * * **
78672 GTTATTAAACAATTGGTTCTGTTCATGCTATTTTATTTAGAATAAAATAAT
130 GTCATAAAACAATT-GTTCTGTTCATACAAGCTTATTTAGAATAAAATAAT
* * ** * ** **
78723 ATTAATTTAATAATATTT-CTAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAATTGT-TG
1 ACTAATTTAATAATATTTAC-AAAATTAATAAGTAAGAAATTTAAAAAATAAAT-TTGTT-TACA
* * * * * * *
78786 AACCAGTTAAAATAGTTATGACGATATGAATAATTATCTATTTTAAATCGTTATGACCTTTTCTT
63 AACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATT
* * * *
78851 TTGTCATAAAACAATTGTTTTGTTCGTACAAGCTTATTCTA-ATTAAAATACT
128 TTGTCATAAAACAATTGTTCTGTTCATACAAGCTTATT-TAGAATAAAATAAT
* *
78903 ACTAATTTAATAATATTTTCAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTACAAAT
1 ACTAATTTAATAATATTTACAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTACAAAC
* * * ** * * * ** *
78968 TAGTTCAAATGGTTAAGACTATTAAAACAATTATCTATTTAAAATTGTTCTAACCTTTTGCTTAG
66 CAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATTTTG
* * *
79033 TTATAAAACAATTGTTCTAGTTCATACAAGCTTATTCAGAATAAATTAAT
131 TCATAAAACAATTGTTCT-GTTCATACAAGCTTATTTAGAATAAAATAAT
* * **
79083 AATAATTTATTAGCA-TT-C--AA--AA-AAG--AG--ATTTAAAAAAATAAATTTGTTT----A
1 ACTAATTTAATAATATTTACAAAATTAATAAGTAAGAAATTT-AAAAAATAAATTTGTTTACAAA
* * * * * * * * **
79133 CCATTTGAACA-A-TT-T-TCTATTT-AA-AATCAT-TA--T--AA-CCTTTTGA---TTTGTCA
65 CCAGTTCAA-ATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATTT
*** * ** * ****
79183 TAAA-----ACAATTATTTAAGTTAATACAAGCTTAGAGGGAATAAAATATACT
129 TGTCATAAAACAATT-GTTCTGTTCATACAAGCTTATTTAGAATAAAATA-A-T
* * * *
79232 AAT-TTATTAAT-AT--TTCCTAAAA-TAATAAGTAAGAAATTT-AAAAATAAATTTGTTTGCCA
1 ACTAAT-TTAATAATATTTAC-AAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTT-ACA
* * * * * * ** * * * *
79291 AATCAATTAAAATAATTATGGCCATTTGAATGATTATTTATTTAAAATCGTTATGACCTTTTGTT
63 AACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATT
* * * * * * *
79356 TTGTCATAAAATATTTGTTTTTGATCATACAAGCTTATTCAAAATAAAATATT
128 TTGTCATAAAACAATTG-TTCTGTTCATACAAGCTTATTTAGAATAAAATAAT
** * * *
79409 ACTAATTTTTTAATATTT-CAAAAATTAATAAGTAAGAGATTTAAAAAAATAAATATATTTATCA
1 ACTAATTTAATAATATTTAC-AAAATTAATAAGTAAGAAATTT-AAAAAATAAATTTGTTTA-CA
* * * * *
79473 AACCAGTTCAAATAGTTATGACTATTTGAACAATTATCAATCTCAAATCATTA-AGATC-TTTGT
63 AACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATA-ACCTTTTAT
* * *
79536 TTTGTCATAAAACAATTATTTCT-TATCATAGAAGCTTATTTAG-TTAAAAATAAT
127 TTTGTCATAAAACAATT-GTTCTGT-TCATACAAGCTTATTTAGAAT-AAAATAAT
79590 ACTAATTTAATAA
1 ACTAATTTAATAA
79603 GAGATTTAAA
Statistics
Matches: 794, Mismatches: 198, Indels: 133
0.71 0.18 0.12
Matches are distributed among these distances:
147 31 0.04
148 5 0.01
149 8 0.01
151 2 0.00
152 6 0.01
153 3 0.00
155 22 0.03
156 2 0.00
157 4 0.01
158 1 0.00
159 1 0.00
160 10 0.01
161 7 0.01
162 3 0.00
163 10 0.01
164 2 0.00
165 6 0.01
166 8 0.01
167 1 0.00
168 1 0.00
169 4 0.01
170 19 0.02
171 8 0.01
173 3 0.00
174 8 0.01
176 19 0.02
177 10 0.01
178 5 0.01
179 111 0.14
180 191 0.24
181 220 0.28
182 62 0.08
183 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
ACTAATTTAATAATATTTACAAAATTAATAAGTAAGAAATTTAAAAAATAAATTTGTTTACAAAC
CAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCGTTATAACCTTTTATTTTG
TCATAAAACAATTGTTCTGTTCATACAAGCTTATTTAGAATAAAATAAT
Found at i:79899 original size:25 final size:25
Alignment explanation
Indices: 79871--79918 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
79861 TAATTAAATT
79871 ATTAATATAGA-ATTAATTAATAACA
1 ATTAATATAGATATTAA-TAATAACA
*
79896 ATTAATATTGATATTAATAATAA
1 ATTAATATAGATATTAATAATAA
79919 ATAATATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTAATATAGATATTAATAATAACA
Found at i:79914 original size:22 final size:22
Alignment explanation
Indices: 79886--79955 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
79876 TATAGAATTA
* *
79886 ATTAATAACAATTAATATTGAT
1 ATTAATAACAAATAATATTAAT
*
79908 ATTAATAATAAATAATATTAAT
1 ATTAATAACAAATAATATTAAT
* * *
79930 ATTTAGTTA-TAATAATATTAAT
1 A-TTAATAACAAATAATATTAAT
79952 ATTA
1 ATTA
79956 GGTATTAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
21 3 0.07
22 33 0.80
23 5 0.12
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.44
Consensus pattern (22 bp):
ATTAATAACAAATAATATTAAT
Found at i:80658 original size:181 final size:181
Alignment explanation
Indices: 80353--80732 Score: 477
Period size: 181 Copynumber: 2.1 Consensus size: 181
80343 AAACCAAAAG
* * * * * * *
80353 GTCATAACGAGTTGAATTGGTTCGGTAAACAAATTTTTATTTTAAATCTATCAGTTATTAAATTT
1 GTCATAACTATTTGAACTGATTCGATAAACAAATTTATATTTTAAATCTATCACTTATTAAATTT
* *
80418 CATAATATTACCAGATGAGTATTATTTTATTTCGAATAAGCTTATATGAAGATAAATAATTATTT
66 CATAATATTACCAAATGAGTATTATTTTATTTCGAATAAGCTTATATGAAGAAAAATAATTATTT
80483 TATGACAAAACAAAAGGTT-ATAATGATTGGAAATAT-ATAATTGTTCAAATA
131 TATGACAAAACAAAA-GTTCATAATGATTGGAAAT-TGATAATTGTTCAAATA
*
80534 GTCATAACTATTTGAACTGATTCGATAAACAAATTTA-ATTTTTAAATCT-TCTACTTATTAATT
1 GTCATAACTATTTGAACTGATTCGATAAACAAATTTATA-TTTTAAATCTATC-ACTTATTAA-A
* * * * *
80597 TTTCA-AATATTTA-TAAATTAGTATTATTTTA-TTCTGAATAGGCTTGTATGATGAAAAATAAT
63 TTTCATAATA-TTACCAAATGAGTATTATTTTATTTC-GAATAAGCTTATATGAAGAAAAATAAT
* * *
80659 TGTTTTATGACAAAACAAAAGTTCATAATGATTTGAGATTGATAATTGTTCAAATA
126 TATTTTATGACAAAACAAAAGTTCATAATGATTGGAAATTGATAATTGTTCAAATA
*
80715 GTCATAATTATTTGAACT
1 GTCATAACTATTTGAACT
80733 AGTTTATCCA
Statistics
Matches: 173, Mismatches: 19, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
180 10 0.06
181 155 0.90
182 8 0.05
ACGTcount: A:0.39, C:0.08, G:0.12, T:0.41
Consensus pattern (181 bp):
GTCATAACTATTTGAACTGATTCGATAAACAAATTTATATTTTAAATCTATCACTTATTAAATTT
CATAATATTACCAAATGAGTATTATTTTATTTCGAATAAGCTTATATGAAGAAAAATAATTATTT
TATGACAAAACAAAAGTTCATAATGATTGGAAATTGATAATTGTTCAAATA
Found at i:81779 original size:97 final size:96
Alignment explanation
Indices: 81636--81827 Score: 321
Period size: 97 Copynumber: 2.0 Consensus size: 96
81626 TTCAATATAG
*
81636 ATTTAGTTTTACTCTTAGTTTTCCACATGGTATGAGAGCTAGGACTTTCTTTCCATTGCCCTTTC
1 ATTTAGTTTTACTCTTAGTTTTCCACATGGTATGAGAGCCAGGACTTTCTTTCCATTGCCCTTTC
*
81701 CTAATTTGTCACATGGAAGGCTTCTTTCCTA
66 CTAATTTGTCACATGAAAGGCTTCTTTCCTA
* **
81732 ATTTAGTTTTACTCTTAGTTTTTCCATATGGTATGAGAGCCAGGACTTTCTTTCTGTTGCCCTTT
1 ATTTAGTTTTACTCTTAG-TTTTCCACATGGTATGAGAGCCAGGACTTTCTTTCCATTGCCCTTT
*
81797 CCTAATTTGTCACATGAAAGGCTTTTTTCCT
65 CCTAATTTGTCACATGAAAGGCTTCTTTCCT
81828 CTTCACCTAT
Statistics
Matches: 89, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
96 18 0.20
97 71 0.80
ACGTcount: A:0.19, C:0.21, G:0.16, T:0.44
Consensus pattern (96 bp):
ATTTAGTTTTACTCTTAGTTTTCCACATGGTATGAGAGCCAGGACTTTCTTTCCATTGCCCTTTC
CTAATTTGTCACATGAAAGGCTTCTTTCCTA
Found at i:82448 original size:21 final size:21
Alignment explanation
Indices: 82424--82486 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
82414 TAATAACCAA
82424 TAATTCATATTTAATTATTAT
1 TAATTCATATTTAATTATTAT
* * *
82445 TAATT-AAATTATAATAATTAA
1 TAATTCATATT-TAATTATTAT
* *
82466 TAATTC-TAATTAATTAATAT
1 TAATTCATATTTAATTATTAT
82486 T
1 T
82487 CCAAAATTAA
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
20 12 0.38
21 20 0.62
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (21 bp):
TAATTCATATTTAATTATTAT
Found at i:82470 original size:31 final size:31
Alignment explanation
Indices: 82435--82499 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 31
82425 AATTCATATT
* *
82435 TAATTATTATTAATTAA-ATTATAATAATTAA
1 TAATTATAATTAATTAATATTACAA-AATTAA
* *
82466 TAATTCTAATTAATTAATATTCCAAAATTAA
1 TAATTATAATTAATTAATATTACAAAATTAA
82497 TAA
1 TAA
82500 GTAAAAGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 24 0.83
32 5 0.17
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (31 bp):
TAATTATAATTAATTAATATTACAAAATTAA
Found at i:82481 original size:17 final size:17
Alignment explanation
Indices: 82435--82484 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
82425 AATTCATATT
*
82435 TAATTATTATTAATT-A
1 TAATTATAATTAATTAA
82451 -AATTATAA-TAATTAA
1 TAATTATAATTAATTAA
*
82466 TAATTCTAATTAATTAA
1 TAATTATAATTAATTAA
82483 TA
1 TA
82485 TTCCAAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
14 5 0.17
15 8 0.28
16 7 0.24
17 9 0.31
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATTATAATTAATTAA
Found at i:82834 original size:11 final size:11
Alignment explanation
Indices: 82811--82847 Score: 56
Period size: 11 Copynumber: 3.2 Consensus size: 11
82801 AAAATATATT
82811 ATATAATTTATA
1 ATATAA-TTATA
82823 ATATAATTATA
1 ATATAATTATA
82834 ATATAATTAATA
1 ATATAATT-ATA
82846 AT
1 AT
82848 TATATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
ATATAATTATA
Found at i:82840 original size:16 final size:16
Alignment explanation
Indices: 82819--82867 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 16
82809 TTATATAATT
82819 TATAATATAATTATAA
1 TATAATATAATTATAA
* *
82835 TATAAT-TAATAATTA
1 TATAATATAATTATAA
*
82850 TATTA-ATAATTA-AA
1 TATAATATAATTATAA
82864 TATA
1 TATA
82868 TTATTGGTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
14 4 0.15
15 16 0.62
16 6 0.23
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
TATAATATAATTATAA
Found at i:82847 original size:30 final size:30
Alignment explanation
Indices: 82802--82871 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
82792 TTGTTTATTA
82802 AAATAT-ATTATATAATTTATAAT-ATAATT
1 AAATATAATTATATAA-TTATAATAATAATT
*
82831 ATAATATAATTA-ATAATTATATTAATAATT
1 A-AATATAATTATATAATTATAATAATAATT
82861 AAATAT-ATTAT
1 AAATATAATTAT
82872 TGGTTTTAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
28 4 0.11
29 12 0.33
30 16 0.44
31 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (30 bp):
AAATATAATTATATAATTATAATAATAATT
Found at i:82854 original size:23 final size:24
Alignment explanation
Indices: 82811--82859 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
82801 AAAATATATT
*
82811 ATATAATTTATAATATAATT-ATA
1 ATATAATTAATAATATAATTAATA
82834 ATATAATTAATAAT-TATATTAATA
1 ATATAATTAATAATATA-ATTAATA
82858 AT
1 AT
82860 TAAATATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 2 0.09
23 16 0.70
24 5 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
ATATAATTAATAATATAATTAATA
Found at i:82861 original size:12 final size:11
Alignment explanation
Indices: 82797--82859 Score: 55
Period size: 12 Copynumber: 5.9 Consensus size: 11
82787 AACAATTGTT
82797 TATTAA-AATA
1 TATTAATAATA
82807 TATT-AT-ATA
1 TATTAATAATA
*
82816 -ATTTATAATA
1 TATTAATAATA
82826 TAATT-ATAATA
1 T-ATTAATAATA
82837 TAATTAATAATTA
1 T-ATTAATAA-TA
82850 TATTAATAAT
1 TATTAATAAT
82860 TAAATATATT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
8 3 0.07
9 6 0.13
10 7 0.15
11 12 0.26
12 15 0.33
13 3 0.07
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TATTAATAATA
Found at i:83063 original size:13 final size:14
Alignment explanation
Indices: 83032--83077 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
83022 TATTATTAAT
83032 TTAATATATAGATTA
1 TTAAT-TATAGATTA
83047 TTAATTATAGA-TA
1 TTAATTATAGATTA
* *
83060 TTAAATATA-TTTA
1 TTAATTATAGATTA
83073 TTAAT
1 TTAAT
83078 CCTAATAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 16 0.59
14 6 0.22
15 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (14 bp):
TTAATTATAGATTA
Found at i:83366 original size:16 final size:16
Alignment explanation
Indices: 83347--83381 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
83337 TAAATGTTCA
83347 AATAATAATATTA-TTT
1 AATAATAAT-TTAGTTT
83363 AATAATAATTTAGTTT
1 AATAATAATTTAGTTT
83379 AAT
1 AAT
83382 TATTATCAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
AATAATAATTTAGTTT
Found at i:84129 original size:10 final size:11
Alignment explanation
Indices: 84108--84147 Score: 50
Period size: 10 Copynumber: 3.9 Consensus size: 11
84098 ATGTTTAACA
*
84108 TAATTCATAAT
1 TAATTAATAAT
84119 TAATT-ATAAT
1 TAATTAATAAT
84129 TAATTAATAA-
1 TAATTAATAAT
84139 T-ATTAATAA
1 TAATTAATAA
84148 ATAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 8 0.29
10 11 0.39
11 9 0.32
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:84145 original size:13 final size:14
Alignment explanation
Indices: 84115--84157 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
84105 ACATAATTCA
*
84115 TAATTAATTATAAT
1 TAATTAATAATAAT
84129 TAATTAATAAT-AT
1 TAATTAATAATAAT
*
84142 TAATAAATAAATAAT
1 TAATTAAT-AATAAT
84157 T
1 T
84158 TGATCATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.36
14 13 0.52
15 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATTAATAATAAT
Found at i:86301 original size:181 final size:178
Alignment explanation
Indices: 86076--86680 Score: 478
Period size: 181 Copynumber: 3.4 Consensus size: 178
86066 AATAATTACA
* * * **
86076 ACTATTTGAACAATTATTTATTTCAAATCAT-TATTATTTTTTATTTTTTCATAAAACAATTGTT
1 ACTATTTGAATAATTATCTATTTCAAAT--TGTATAACCTTTTATTTTTTCATAAAACAATTGTT
* * *
86140 TTCGTTAAGATAAGTTTGTTTAAAATAAAATAATACTAATTTATTAATATTTAGAAAATTAATTA
64 TTCGTTAAGATAAGTTTATTTAAAATAAAATAATACTAATTTAATAATATTTA-AAAATTAATAA
** * * *
86205 GTAAGAGTTTTAAAAAGTAAATTTGTTTACCAAACCATTTCAAAA-AGTTTTG
128 GTAAGAAATTTAAAAAATAAATTTGTTTA-CAAACCAGTT-AAAATAGTTATG
* *
86257 ACTATTTGAATAATTATCTATTTCAAATTGTCATAACCTTTTATTTTGTT-ATTAAACAATTG-G
1 ACTATTTGAATAATTATCTATTTCAAATTGT-ATAACCTTTTATTTT-TTCATAAAACAATTGTT
* * * * * * * * *
86320 TTCTGTTCATGCT-ATTTTCTTTAGAATGAAATAATATTAATTTAATAATATTTCTAAACTTAAT
64 TTC-GTT-AAGATAAGTTTATTTAAAATAAAATAATACTAATTTAATAATATTT-AAAAATTAAT
** * * * *
86384 AACCAAGAAAATTAAAAAATAAATCTAATGGTT--GAACTAGTTAAAATAGTTATG
126 AAGTAAGAAATTTAAAAAATAAAT-T--TGTTTACAAACCAGTTAAAATAGTTATG
* * * *
86438 ACGATATGAATAATTATCTATTTTAAATTGGTATGACCTTTT-TTTTTGTCATAAAACAATTGTT
1 ACTATTTGAATAATTATCTATTTCAAATT-GTATAACCTTTTATTTTT-TCATAAAACAATTGTT
* * * *
86502 TT-GTT-CGTACAAGCTTATTCT-AATTAAAATAATACTAATTTAATAATAATTTAAAAATTAAT
64 TTCGTTAAG-ATAAGTTTATT-TAAAATAAAATAATACTAATTTAATAAT-ATTTAAAAATTAAT
* * * * * *
86564 AAGTAAGAAATTTAAAAAATAAATTTGTTTACAAATCGGTTCAAATGGCTAAG
126 AAGTAAGAAATTTAAAAAATAAATTTGTTTACAAACCAGTTAAAATAGTTATG
** * * * * **
86617 ACTATTAAAACAATTATCTATTTAAAATTGTTCTAACCTTTTGCTTAGTT-ATAAAACAATTGTT
1 ACTATTTGAATAATTATCTATTTCAAATTG-TATAACCTTTT-ATTTTTTCATAAAACAATTGTT
86681 CTAGTTCATA
Statistics
Matches: 332, Mismatches: 69, Indels: 48
0.74 0.15 0.11
Matches are distributed among these distances:
177 4 0.01
178 2 0.01
179 62 0.19
180 73 0.22
181 177 0.53
182 10 0.03
184 4 0.01
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (178 bp):
ACTATTTGAATAATTATCTATTTCAAATTGTATAACCTTTTATTTTTTCATAAAACAATTGTTTT
CGTTAAGATAAGTTTATTTAAAATAAAATAATACTAATTTAATAATATTTAAAAATTAATAAGTA
AGAAATTTAAAAAATAAATTTGTTTACAAACCAGTTAAAATAGTTATG
Found at i:87561 original size:22 final size:22
Alignment explanation
Indices: 87522--87568 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
87512 TATAGAATTA
* * *
87522 ATTAATAACAATTTATATTGAT
1 ATTAATAACAAATAATATTAAT
*
87544 ATTAATAATAAATAATATTAAT
1 ATTAATAACAAATAATATTAAT
87566 ATT
1 ATT
87569 TAGTTATAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTAATAACAAATAATATTAAT
Found at i:87708 original size:22 final size:24
Alignment explanation
Indices: 87660--87714 Score: 62
Period size: 22 Copynumber: 2.4 Consensus size: 24
87650 ATAATATTTT
*
87660 ATAAATATTTATAAATTATTAGTA
1 ATAAATATTTATAAATTATTAGCA
87684 ATAAATATTT-T-AATTAATTA-CA
1 ATAAATATTTATAAATT-ATTAGCA
*
87706 ATAACTATT
1 ATAAATATT
87715 ATATTGTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 13 0.46
23 5 0.18
24 10 0.36
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAAATATTTATAAATTATTAGCA
Found at i:88348 original size:171 final size:169
Alignment explanation
Indices: 88117--88569 Score: 466
Period size: 181 Copynumber: 2.6 Consensus size: 169
88107 TTACCAGATG
* * *
88117 AGTATTTTTTTATTTCAAATAAGCTTATATGAAGATAAATAATTGTTTTATGACAAAACAAAAGG
1 AGTATTATTTTATTT-AAATAAGCTTATATGATGA-AAATAATTGTTTTATGAAAAAACAAAA-G
* * *
88182 TT-ATAATGATTGGAAATATATAATTGTTCAAATAGTTGAACTGATTCGATAAACAAATTTAAT-
63 TTCATAATGATTTGAAATAGATAATTGTTCAAATAGTTGAACTGATTCAATAAACAAATTT-ATG
*
88245 TTTTAAATCTTCT-ACTTATTAATTTTT-TAAATATTAATAAATT
127 TTTTAAATC-TCTAACTTATCAATTTTTAT-AATATTAATAAATT
* * *
88288 AGTATTATTTTATTCTGAATAGGCTTGTATGATGAAAAATAATTGTTTTATGAAAAAACAAAAGT
1 AGTATTATTTTATT-TAAATAAGCTTATATGATG-AAAATAATTGTTTTATGAAAAAACAAAAGT
* **
88353 TCATAATGATTTGAAATAGATAATTGTTTAAATGGCCATAATTATTTGAACTGATTCAATAAATT
64 TCATAATGATTTGAAATAGATAATTG--T---T---CA-AA-TAGTTGAACTGATTCAATAAACA
*
88418 GATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAATT
119 AATTTATGTTTTAAATCTCTAACTTATCAATTTTTATAATATTAATAAATT
* * * * * * *
88469 AATATTATTTTATTTCAGATAAGCTTTTATGAATTG-AAACAATTGTTTTATGATAAAATATAAG
1 AGTATTATTTTATTT-AAATAAGCTTATATG-A-TGAAAATAATTGTTTTATGAAAAAACAAAAG
* * *
88533 TTCATAACGATTTTAAATAGATAATTGTTGAAATAGT
63 TTCATAATGATTTGAAATAGATAATTGTTCAAATAGT
88570 CAAAAATATT
Statistics
Matches: 236, Mismatches: 27, Indels: 38
0.78 0.09 0.13
Matches are distributed among these distances:
170 3 0.01
171 78 0.33
172 4 0.02
173 2 0.01
176 2 0.01
179 3 0.01
180 8 0.03
181 132 0.56
182 2 0.01
183 2 0.01
ACGTcount: A:0.41, C:0.06, G:0.11, T:0.43
Consensus pattern (169 bp):
AGTATTATTTTATTTAAATAAGCTTATATGATGAAAATAATTGTTTTATGAAAAAACAAAAGTTC
ATAATGATTTGAAATAGATAATTGTTCAAATAGTTGAACTGATTCAATAAACAAATTTATGTTTT
AAATCTCTAACTTATCAATTTTTATAATATTAATAAATT
Found at i:88521 original size:181 final size:178
Alignment explanation
Indices: 88211--88765 Score: 577
Period size: 181 Copynumber: 3.1 Consensus size: 178
88201 ATAATTGTTC
* * *
88211 AAATAGTTGAACTGATTCGATAAACAAATTTAATTTTTAAATCTTCTACTTATTAATTTTTTAAA
1 AAATATTTGAACTGATTCGATAAATAGATTT-ATTTTTAAATC-TCTACTTA-TAATTTTTTAAA
*
88276 TATTAATAAATTAGTATTATTTTA-TTCTGAATAGGCTTGTATG-A-TGAAAAATAATTGTTTTA
63 TATTAATAAATTAGTATTATTTTATTTC-GAATAAGCTTGTATGAATTG--AAATAATTGTTTTA
* *
88338 TGAAAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATGGCCAT
125 TGAAAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCAT
* * *
88392 AATTATTTGAACTGATTCAATAAATTGATTTATGTTTTAAATCTCTAACTTATCAA-TTTTTATA
1 AAATATTTGAACTGATTCGATAAATAGATTTAT-TTTTAAATCTCT-ACTTAT-AATTTTTTA-A
* * *
88456 ATATTAATAAATTAATATTATTTTATTTC-AGATAAGCTTTTATGAATTGAAACAATTGTTTTAT
62 ATATTAATAAATTAGTATTATTTTATTTCGA-ATAAGCTTGTATGAATTGAAATAATTGTTTTAT
* * * * * * *
88520 GATAAAATATAAGTTCATAACGATTTTAAATAGATAATTGTTGAAATAGTCAA
126 GAAAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCAT
* * * *
88573 AAATATTTGAACTTG-TTCGGTAAATGGATTT-TTTGTCT-AATTTCTTACTTAATAATTTTTTG
1 AAATATTTGAAC-TGATTCGATAAATAGATTTATTT-T-TAAATCTC-TACTT-ATAATTTTTTA
** * * * *
88635 AATGCTAATAAATTAGTATTATTTTATTTCGAATAAGCATGTATGAGTTGAAGTAATTATTTTAT
61 AATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATTGAAATAATTGTTTTAT
** * * * * *
88700 GACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTATTTTAATAGTCTT
126 GAAAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCAT
*
88753 AACTATTTGAACT
1 AAATATTTGAACT
88766 AATTTAACAA
Statistics
Matches: 311, Mismatches: 48, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
179 3 0.01
180 131 0.42
181 169 0.54
182 6 0.02
183 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.11, T:0.43
Consensus pattern (178 bp):
AAATATTTGAACTGATTCGATAAATAGATTTATTTTTAAATCTCTACTTATAATTTTTTAAATAT
TAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGAATTGAAATAATTGTTTTATGAAAA
AACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATAGTCAT
Found at i:88559 original size:352 final size:353
Alignment explanation
Indices: 87906--88569 Score: 796
Period size: 352 Copynumber: 1.9 Consensus size: 353
87896 TATTAAATCT
*
87906 CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTTTGAACAAACTTATATGAACAA
1 CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTCTGAACAAACTTATATGAACAA
* *
87971 AAACATTTGCTTTACGATAAAAACAAAAGGTCATAATGATTTAAAATAGATAATTATTCATATGA
66 AAACAATTGCTTTACGATAAAAACAAAAGGTCATAATGATTTAAAATAGATAATTATTCAAATGA
* * * ** * * * *
88036 GCCTTAACTATTTGAATTGGTTCGGTAAACAAATTTTTATTTTAAATCTATCAGTTATTAAATTT
131 GCCATAACTATTTGAACTGATTCAATAAACAAATTTATATTTTAAATCTATAACTTATCAAATTT
* * * * *
88101 CATAATTTACCAGATGAGTATTTTTTTATTTCAAATAAGCTTATATGAAGATAAATAATTGTTTT
196 CATAATTTAACAAATGAATATTATTTTATTTCAAATAAGCTTATATGAAGATAAACAATTGTTTT
* *
88166 ATGACAAAACAAAAGGTTATAATGATTGGAAATATATAATTGTTCAAATAGTTGAACTGATTCGA
261 ATGACAAAACAAAAGGTTATAACGATTGGAAATAGATAATTGTTCAAATAGTTGAACTGATTCGA
88231 TAAACAAATTTAATTTTTAAATCTTCTA
326 TAAACAAATTTAATTTTTAAATCTTCTA
* * * ** * **
88259 CTTATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTCTGAATAGGCTTGTATGATGAA
1 CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTCTGAACAAACTTATATGAACAA
* * * * * * *
88324 AAATAATTGTTTTATGA-AAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAAATG-
66 AAACAATTGCTTTACGATAAAAACAAAAGGTCATAATGATTTAAAATAGATAATTATTCAAATGA
* *** * * *
88387 GCCATAATTATTTGAACTGATTCAATAAATTGATTTATGTTTTAAATCTCTAACTTATCAATTTT
131 GCCATAACTATTTGAACTGATTCAATAAACAAATTTATATTTTAAATCTATAACTTATCAAATTT
* * * * * *
88452 TATAATATTAATAAATTAATATTATTTTATTTCAGATAAGCTTTTATGAA-TTGAAACAATTGTT
196 CATAAT-TTAACAAATGAATATTATTTTATTTCAAATAAGCTTATATGAAGAT-AAACAATTGTT
* * * ** *
88516 TTATGATAAAATATAA-GTTCATAACGATTTTAAATAGATAATTGTTGAAATAGT
259 TTATGACAAAACAAAAGGTT-ATAACGATTGGAAATAGATAATTGTTCAAATAGT
88570 CAAAAATATT
Statistics
Matches: 255, Mismatches: 53, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
351 58 0.23
352 128 0.50
353 69 0.27
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (353 bp):
CTTATTAATTTTTGAAATATTAATAAATTAATATTATTTTATTCTGAACAAACTTATATGAACAA
AAACAATTGCTTTACGATAAAAACAAAAGGTCATAATGATTTAAAATAGATAATTATTCAAATGA
GCCATAACTATTTGAACTGATTCAATAAACAAATTTATATTTTAAATCTATAACTTATCAAATTT
CATAATTTAACAAATGAATATTATTTTATTTCAAATAAGCTTATATGAAGATAAACAATTGTTTT
ATGACAAAACAAAAGGTTATAACGATTGGAAATAGATAATTGTTCAAATAGTTGAACTGATTCGA
TAAACAAATTTAATTTTTAAATCTTCTA
Found at i:88832 original size:13 final size:15
Alignment explanation
Indices: 88796--88828 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
88786 TAATTTAAGG
88796 TATATTAATAACATT
1 TATATTAATAACATT
88811 TATATTAATAACATT
1 TATATTAATAACATT
88826 TAT
1 TAT
88829 TAATTTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
TATATTAATAACATT
Found at i:89104 original size:12 final size:12
Alignment explanation
Indices: 89087--89118 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
89077 TATTTAAGTT
89087 ATAATTATTAAA
1 ATAATTATTAAA
*
89099 ATAATTAATAAA
1 ATAATTATTAAA
89111 ATAATTAT
1 ATAATTAT
89119 AATTTATATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATTATTAAA
Found at i:90420 original size:21 final size:22
Alignment explanation
Indices: 90380--90420 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
90370 GTAATAAGTA
* *
90380 AAAATCATTTATATTAATTATT
1 AAAATCATTAATAATAATTATT
90402 AAAAT-ATTAATAATAATTA
1 AAAATCATTAATAATAATTA
90421 ATACTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
AAAATCATTAATAATAATTATT
Found at i:90459 original size:24 final size:23
Alignment explanation
Indices: 90409--90461 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
90399 ATTAAAATAT
* *
90409 TAATAATAATTAATACTAATTTC
1 TAATATTAATTAATACTAATTTA
90432 TAATATTAATTGAATTA-TAATTTA
1 TAATATTAATT-AA-TACTAATTTA
90456 TAATAT
1 TAATAT
90462 AATAACATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 10 0.38
24 14 0.54
25 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (23 bp):
TAATATTAATTAATACTAATTTA
Found at i:90536 original size:11 final size:11
Alignment explanation
Indices: 90520--90545 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
90510 TTTAATTATA
90520 AAATATATACT
1 AAATATATACT
90531 AAATATATACT
1 AAATATATACT
90542 AAAT
1 AAAT
90546 TTATTGTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (11 bp):
AAATATATACT
Found at i:90623 original size:14 final size:14
Alignment explanation
Indices: 90601--90642 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
90591 TAGTATTACT
90601 ATAACTTATTAACT-A
1 ATAA-TTATTAA-TAA
90616 ATAATTATTAATAA
1 ATAATTATTAATAA
*
90630 ATAATTGTTAATA
1 ATAATTATTAATA
90643 GATTAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 1 0.04
14 20 0.80
15 4 0.16
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (14 bp):
ATAATTATTAATAA
Found at i:90690 original size:22 final size:21
Alignment explanation
Indices: 90665--90744 Score: 60
Period size: 22 Copynumber: 3.8 Consensus size: 21
90655 CGATTAATCC
90665 TTAAATATTAATCTAATTCATT
1 TTAAATATTAATC-AATTCATT
* *
90687 TTAAAT-TTAATAGAAATAGCATT
1 TTAAATATTAAT--CAAT-TCATT
*
90710 TTAAATTAATAA-CAATT-ATT
1 TTAAA-TATTAATCAATTCATT
90730 TTAAATATTAA-CAAT
1 TTAAATATTAATCAAT
90745 GATTATTAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 9 0.19
20 8 0.17
21 5 0.11
22 12 0.26
23 9 0.19
24 1 0.02
25 3 0.06
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (21 bp):
TTAAATATTAATCAATTCATT
Found at i:90743 original size:19 final size:20
Alignment explanation
Indices: 90684--90754 Score: 65
Period size: 20 Copynumber: 3.4 Consensus size: 20
90674 AATCTAATTC
90684 ATTTTAAATTTAATAGA-AATAG
1 ATTTTAAA-TTAATA-ACAAT-G
*
90706 CATTTTAAATTAATAACAATT
1 -ATTTTAAATTAATAACAATG
*
90727 ATTTTAAA-TATTAACAATG
1 ATTTTAAATTAATAACAATG
90746 ATTATTAAA
1 ATT-TTAAA
90755 CATAATAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
19 12 0.28
20 13 0.30
21 1 0.02
22 9 0.21
23 8 0.19
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (20 bp):
ATTTTAAATTAATAACAATG
Found at i:91703 original size:33 final size:32
Alignment explanation
Indices: 91636--91717 Score: 91
Period size: 33 Copynumber: 2.7 Consensus size: 32
91626 TTCAATTGTT
*
91636 TAATATAATTATATTATTATATCATTAAATTAA
1 TAATATAATTATA-TAATATATCATTAAATTAA
* *
91669 TAATATAATTATATAATAT-TTATTACATT-A
1 TAATATAATTATATAATATATCATTAAATTAA
*
91699 TAATA-AA-TATTTAATATAT
1 TAATATAATTATATAATATAT
91718 AATAATATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
28 9 0.20
29 3 0.07
30 6 0.14
31 8 0.18
32 5 0.11
33 13 0.30
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (32 bp):
TAATATAATTATATAATATATCATTAAATTAA
Found at i:91709 original size:17 final size:16
Alignment explanation
Indices: 91666--91731 Score: 57
Period size: 17 Copynumber: 4.0 Consensus size: 16
91656 ATCATTAAAT
91666 TAATAATA-TAATTATA
1 TAATAATATTAA-TATA
*
91682 TAATATTTATTACAT-TA
1 TAATA-ATATTA-ATATA
91699 TAATAAATATTTAATATA
1 TAAT-AATA-TTAATATA
91717 TAATAATATT-ATATA
1 TAATAATATTAATATA
91732 ATTAAATAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 13
0.74 0.04 0.23
Matches are distributed among these distances:
15 5 0.12
16 7 0.17
17 16 0.38
18 13 0.31
19 1 0.02
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TAATAATATTAATATA
Found at i:91735 original size:8 final size:8
Alignment explanation
Indices: 91638--91755 Score: 64
Period size: 8 Copynumber: 14.4 Consensus size: 8
91628 CAATTGTTTA
91638 ATATAATT
1 ATATAATT
*
91646 ATATTATT
1 ATATAATT
*
91654 ATATCATT
1 ATATAATT
* *
91662 AAATTAATA
1 ATA-TAATT
91671 ATATAATT
1 ATATAATT
91679 ATATAATAT
1 ATATAAT-T
*
91688 TTATTACATT
1 ATA-TA-ATT
*
91698 ATAATAAAT
1 AT-ATAATT
*
91707 ATTTAA-T
1 ATATAATT
91714 ATATAA-T
1 ATATAATT
91721 A-AT-ATT
1 ATATAATT
91727 ATATAATT
1 ATATAATT
*
91735 AAATAAATT
1 ATAT-AATT
*
91744 AAATATATT
1 ATATA-ATT
91753 ATA
1 ATA
91756 ATGATAAACA
Statistics
Matches: 86, Mismatches: 14, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
5 1 0.01
6 4 0.05
7 10 0.12
8 37 0.43
9 25 0.29
10 6 0.07
11 3 0.03
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (8 bp):
ATATAATT
Found at i:91796 original size:14 final size:13
Alignment explanation
Indices: 91774--91845 Score: 50
Period size: 14 Copynumber: 5.9 Consensus size: 13
91764 CATTTGCTTA
*
91774 TTAATTATTATAAT
1 TTAACTATTAT-AT
91788 TTAACTATTATAT
1 TTAACTATTATAT
91801 TT-A--ATT-TA-
1 TTAACTATTATAT
91809 TTAACTATTAT-T
1 TTAACTATTATAT
* *
91821 ATATCTATTACTAT
1 TTAACTATTA-TAT
91835 TTAA-TATTATA
1 TTAACTATTATA
91846 AATAAGAGAT
Statistics
Matches: 46, Mismatches: 5, Indels: 16
0.69 0.07 0.24
Matches are distributed among these distances:
8 2 0.04
9 3 0.07
10 3 0.07
11 3 0.07
12 12 0.26
13 10 0.22
14 13 0.28
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.56
Consensus pattern (13 bp):
TTAACTATTATAT
Found at i:91810 original size:35 final size:35
Alignment explanation
Indices: 91771--91844 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
91761 AAACATTTGC
* *
91771 TTATTAATTATTATAATTTAACTATTA-TATTTAAT-
1 TTATTAACTATTAT--TATAACTATTACTATTTAATA
*
91806 TTATTAACTATTATTATATCTATTACTATTTAATA
1 TTATTAACTATTATTATAACTATTACTATTTAATA
91841 TTAT
1 TTAT
91845 AAATAAGAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 9 0.26
34 8 0.24
35 17 0.50
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (35 bp):
TTATTAACTATTATTATAACTATTACTATTTAATA
Found at i:92032 original size:17 final size:17
Alignment explanation
Indices: 92010--92052 Score: 50
Period size: 19 Copynumber: 2.4 Consensus size: 17
92000 TTAATAAATA
92010 ATAATTTATAAAATATT
1 ATAATTTATAAAATATT
*
92027 ATAATTATTATAATATATT
1 ATAA-T-TTATAAAATATT
92046 ATTAATT
1 A-TAATT
92053 AATATATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 4 0.18
18 2 0.09
19 13 0.59
20 3 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATAATTTATAAAATATT
Found at i:92037 original size:19 final size:20
Alignment explanation
Indices: 92015--92058 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
92005 AAATAATAAT
92015 TTATAAAATATTA-TAATTA
1 TTATAAAATATTATTAATTA
*
92034 TTATAATATATTATTAATTA
1 TTATAAAATATTATTAATTA
*
92054 ATATA
1 TTATA
92059 TATAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTATAAAATATTATTAATTA
Found at i:92045 original size:10 final size:10
Alignment explanation
Indices: 92015--92047 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
92005 AAATAATAAT
*
92015 TTATAAAATA
1 TTATAATATA
92025 TTATAAT-TA
1 TTATAATATA
92034 TTATAATATA
1 TTATAATATA
92044 TTAT
1 TTAT
92048 TAATTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 9 0.43
10 12 0.57
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTATAATATA
Found at i:92047 original size:29 final size:32
Alignment explanation
Indices: 92007--92066 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 32
91997 TAATTAATAA
92007 ATAATAATTTA-TAA-AATAT-TATAATTATT
1 ATAATAATTTATTAATAATATATATAATTATT
92036 ATAAT-ATATTATTAATTAATATATATAATTA
1 ATAATAAT-TTATTAA-TAATATATATAATTA
92067 AATTAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
28 2 0.08
29 8 0.31
30 3 0.12
32 5 0.19
33 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
ATAATAATTTATTAATAATATATATAATTATT
Found at i:92048 original size:13 final size:15
Alignment explanation
Indices: 92037--92077 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 15
92027 ATAATTATTA
92037 TAATATATTATTAAT
1 TAATATATTATTAAT
92052 TAATATATATAATTAAAT
1 TAATATAT-T-ATT-AAT
92070 TAATATAT
1 TAATATAT
92078 CAATATCTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 8 0.35
16 1 0.04
17 3 0.13
18 11 0.48
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATATATTATTAAT
Found at i:92066 original size:20 final size:20
Alignment explanation
Indices: 92022--92077 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
92012 AATTTATAAA
*
92022 ATATTATAATTATTATA-AT
1 ATATTATAATTAATATATAT
92041 ATATTATTAATTAATATATAT
1 ATATTA-TAATTAATATATAT
92062 A-ATTA-AATTAATATAT
1 ATATTATAATTAATATAT
92078 CAATATCTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
18 11 0.32
19 6 0.18
20 14 0.41
21 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATTATAATTAATATATAT
Found at i:92072 original size:18 final size:17
Alignment explanation
Indices: 91995--92077 Score: 73
Period size: 17 Copynumber: 4.8 Consensus size: 17
91985 ATATATTCAT
*
91995 ATTAATTAATAAATAATA
1 ATTAATTAATATAT-ATA
* *
92013 ATTTA-TAAAATATTATA
1 ATTAATTAATATA-TATA
*
92030 ATT-ATT-ATAATATATT
1 ATTAATTAAT-ATATATA
92046 ATTAATTAATATATATA
1 ATTAATTAATATATATA
92063 ATTAAATTAATATAT
1 ATT-AATTAATATAT
92078 CAATATCTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
16 8 0.15
17 27 0.51
18 18 0.34
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
ATTAATTAATATATATA
Found at i:92178 original size:17 final size:18
Alignment explanation
Indices: 92148--92182 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
92138 ATAAATAAAT
92148 ATATAAATTATTTAATAA
1 ATATAAATTATTTAATAA
*
92166 ATAT-AATTTTTTAATAA
1 ATATAAATTATTTAATAA
92183 TTAGTTACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATAAATTATTTAATAA
Found at i:92813 original size:180 final size:175
Alignment explanation
Indices: 92327--92840 Score: 494
Period size: 180 Copynumber: 2.9 Consensus size: 175
92317 AACAAAAATT
* * * * * *
92327 TAATGATTTGAGATTGATAATTGTTCAAATAGTCATAATTATTTGAACTGGTTTGGT-AACAGAT
1 TAATAATTTGAAATAGACAATTGTTCAAATAGTCATAATTATTTGAACTAG-TTGGTAAACATAT
* * * * *
92391 TTATTGTTTAAATCTATTACCTATTATTTTGAAATATTAATCAATTAGTATT-ATGTATTTTGAA
65 TTATTTTTTAAATCT-TTTCTTATTATTTTGAAATATTAATAAATTAGTATTAATTTATTTTGAA
*
92455 TAAGCTTGTATGATAA--AAACAATTG-TATATGACAAAATAAAAAGTCA
129 TAAGCTTGTAT--TAATGAAACAATTGTTTTATGAC-AAATAAAAAGTCA
* * * * * *
92502 TAATAATTTGAAATAGATAATTATTCAAATGGCCATAATTATTTTAACTAATTGGTAAACATATT
1 TAATAATTTGAAATAGACAATTGTTCAAATAGTCATAATTATTTGAACTAGTTGGTAAACATATT
* * ** *
92567 TA-TTTTTAAA----TTCTTATTATTTAGGAAATATTAATAAATTAGTATTATTTTA-TTCCATC
66 TATTTTTTAAATCTTTTCTTATTATTT-TGAAATATTAATAAATTAGTATTAATTTATTTTGA-A
* * *
92626 TAAGCTTGTATTAACTGAAACAATTGTTTTATGAC-AATTAAAGGTTA
129 TAAGCTTGTATTAA-TGAAACAATTGTTTTATGACAAATAAAAAGTCA
* * * * * * *
92673 TAATATTTTTTAAATAGACAATTGTTCAAATAATAATAACTATTTGAACTTGTTCGATAAACATA
1 TAATA-ATTTGAAATAGACAATTGTTCAAATAGTCATAATTATTTGAACTAGTT-GGTAAACATA
* *
92738 TTTATTTTTTAAATCTCTTTCTTATTAATTTTCCAAATGTTAATAAATTAGTATTAATTTATTTT
64 TTTATTTTTTAAATCT-TTTCTTATT-ATTTT-GAAATATTAATAAATTAGTATTAATTTATTTT
*
92803 GAATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
126 GAATAAGCTTGTATTAA-TGAAACAATTGTTTTATGAC
92841 TAAAAAATGG
Statistics
Matches: 274, Mismatches: 46, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
169 13 0.05
170 24 0.09
171 28 0.10
172 45 0.16
173 20 0.07
174 20 0.07
175 51 0.19
179 8 0.03
180 62 0.23
181 3 0.01
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (175 bp):
TAATAATTTGAAATAGACAATTGTTCAAATAGTCATAATTATTTGAACTAGTTGGTAAACATATT
TATTTTTTAAATCTTTTCTTATTATTTTGAAATATTAATAAATTAGTATTAATTTATTTTGAATA
AGCTTGTATTAATGAAACAATTGTTTTATGACAAATAAAAAGTCA
Found at i:93075 original size:13 final size:13
Alignment explanation
Indices: 93057--93081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
93047 AGTAAAATAT
93057 TAATAATTTTATC
1 TAATAATTTTATC
93070 TAATAATTTTAT
1 TAATAATTTTAT
93082 AATAAATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (13 bp):
TAATAATTTTATC
Found at i:93161 original size:17 final size:18
Alignment explanation
Indices: 93129--93162 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
93119 TTATTATTAA
*
93129 TAAATATAATTAATAATT
1 TAAATATAAATAATAATT
93147 TAAAT-TAAATAATAAT
1 TAAATATAAATAATAAT
93163 AATTTGTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
TAAATATAAATAATAATT
Found at i:93321 original size:12 final size:12
Alignment explanation
Indices: 93267--93324 Score: 55
Period size: 12 Copynumber: 4.6 Consensus size: 12
93257 ATTATAAATA
93267 TTAATAATTATT
1 TTAATAATTATT
93279 TTAATGAA-TATT
1 TTAAT-AATTATT
*
93291 TTAATAATCAATTT
1 TTAATAAT-TA-TT
*
93305 ATTAATTATTATT
1 -TTAATAATTATT
93318 TTAATAA
1 TTAATAA
93325 ATTAGTAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
11 2 0.05
12 20 0.54
13 5 0.14
14 3 0.08
15 7 0.19
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (12 bp):
TTAATAATTATT
Done.