Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 1 of 133
Found at i:6608 original size:18 final size:20
Alignment explanation
Indices: 6574--6616 Score: 63
Period size: 18 Copynumber: 2.2 Consensus size: 20
6564 CGGAACTTAA
*
6574 TTATATATTTTTATTAATTT
1 TTATATATTTTTATTAAATT
6594 TTATATA-TTTT-TTAAATT
1 TTATATATTTTTATTAAATT
6612 TTATA
1 TTATA
6617 AAATAAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.50
19 4 0.18
20 7 0.32
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TTATATATTTTTATTAAATT
Found at i:6656 original size:18 final size:18
Alignment explanation
Indices: 6617--6657 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
6607 AAATTTTATA
*
6617 AAATA-AAAAATTTATTT
1 AAATATAAAAATATATTT
*
6634 -TATATAAAAATATATTT
1 AAATATAAAAATATATTT
6651 AAATATA
1 AAATATA
6658 TTAAAAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 3
0.76 0.12 0.12
Matches are distributed among these distances:
16 3 0.16
17 11 0.58
18 5 0.26
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
AAATATAAAAATATATTT
Found at i:6671 original size:22 final size:20
Alignment explanation
Indices: 6634--6677 Score: 52
Period size: 22 Copynumber: 2.1 Consensus size: 20
6624 AAATTTATTT
*
6634 TATATAAAAATATATTTAAA
1 TATATAAAAATATATTAAAA
*
6654 TATATTAAAAATTTTATTAAAA
1 TATA-TAAAAA-TATATTAAAA
6676 TA
1 TA
6678 ACATATACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 6 0.30
22 10 0.50
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TATATAAAAATATATTAAAA
Found at i:19613 original size:26 final size:25
Alignment explanation
Indices: 19576--19625 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
19566 TTTAAACTCC
*
19576 AAATATGTTAAATATCATTTATTAAT
1 AAATATGTTAAAAAT-ATTTATTAAT
19602 AAATAT-TCTAAAAATATTTATTAA
1 AAATATGT-TAAAAATATTTATTAA
19626 GATGATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (25 bp):
AAATATGTTAAAAATATTTATTAAT
Found at i:22005 original size:181 final size:181
Alignment explanation
Indices: 21560--28849 Score: 4312
Period size: 181 Copynumber: 40.7 Consensus size: 181
21550 NNNNNAATAA
** * *
21560 AAGCTTATTCAAAATAAAATAATACTAATTTACTAATATTTCAAAAATTAATAAGTAAGCGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * * * * *
21625 AAAAAGTAAA-TCGTTTACCAAA-TCAGTTCAAATAATTATGGCCATTTCAACAATTATCTATTT
66 AAAAAATAAATTTGTTTACTAAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * * * *
21688 TAAATCA-TTATAACCTTTTGTTTGGTTATATAACAA-T-TTTTTATT-ATAC
130 CAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * **
21737 AAAGTTTATTAG-AATAAAATAATAGTAATTTATTAAT-CCTCAAAAA-T--TAA-TAAGAGATT
1 -AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATT
* * * * * *
21796 TAAAAAATAAATTTATTTA-TCGAACTAGTTTAAATAGTTATGACTATTTGAATAATTGTATACT
65 TAAAAAATAAATTTGTTTACT-AAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATT
* * * *
21860 TCAAATAGTTATAACCTTTTGTTCTGCCATAAAACAATTATTTTTATTTATAC
129 TCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
** * ** * * *
21913 AAGCTTATTCAAAATAAAATAATACTAATATAAAAATATTCCAAAAATTAATAACTGAGAGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * ***
21978 AAAAAATAAATTTGTTTGCTAAACTAGTTAAAATAGTTAAGACTATATGAACCTTTATCTATTT-
66 AAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
* * * *
22042 TAA-A-TCAT----TTTTGTTTTGTCATAAAACAATT-TTTTGAATTCACAC
131 AAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTT-TATTCATAC
* * * *
22087 TAA-CTTATTT-AGAATAAAATAA-A-TGAATTTATTCATA-CTAAAAAATTAATATGTAAGAGA
1 -AAGCTTATTTGA-AATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGA
* * * * * *
22147 TTTAAAAAGT-AATTCTTTTTACCT-AACCAGTTTAAATAATTATGACTATTTGAACAATTATCT
63 TTTAAAAAATAAATT-TGTTTA-CTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * * **
22210 -TTTCAAATAGCTATGACCTTTTGTTTTGTCATAAAACAAATGTTTTTGTTCATGT
126 ATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * *
22265 AAG-TT-TTCTCAAATAAAAGAATACTAATCTATTAATATTTCAAAAATTAATAAG---G-GATT
1 AAGCTTATT-TGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATT
* * * *
22324 TAAAAAATAAATCTGTTTAAC-AAACTAGTTCAAATAGTTATGATTATTT-AAGCAATTATTTAT
65 TAAAAAATAAATTTGTTT-ACTAAACTAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTAT
* * * * * * *
22387 TTTAAATTGTTATGACTTTTTGTTCTATTATAAAACAA-TAGTTTTTGTTCATAC
128 TTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTA-TTTTTATTCATAC
* * * * * *
22441 AAGCTTATTTGGATTAAAATAATACCAATTTATTAATATTTCAACAATTAATAAGTAAAAAATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * *
22506 AAAAAATAAATATGCTTACCAAACTAGATCAAATAGTCATGACTATTTGAATAATTATCTATTTC
66 AAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
* * * * ** *
22571 AAATTGTTATGGCCTTTTGTTTTGTCATAAAAAAATCATTTTGGTTCATAT
131 AAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
*** *
22622 AAGCTTATTTGAAATAAAATAATACTAAGCCATTAATA-TTCTAAAAATTAATAATTAAGAGATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGATT
* * * ** * * ** *
22686 TAAAAAATGAATCTATTTAAGAAACAAGTTTAAATAACTATGACTATTTGAACAATTATCTATTT
65 TAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * * * * *
22751 GAAATTGCTATAACCTTTTATTTTG-CGATAAAATGAATT-TTTTCTATTCATAC
130 CAAATAGTTATGACCTTTTGTTTTGTC-ATAAAA-CAATTATTTT-TATTCATAC
* * * *
22804 AAACTTATTTCG-AATAAAATAATACAAATTTATTAATA-TT-AAGACAATTAATAAGTAAAAAA
1 AAGCTTATTT-GAAATAAAATAATACTAATTTATTAATATTTCAA-A-AATTAATAAGTAAGAGA
* * * * *** *
22866 TTTAAAAAATAAATTTATTTACTGAACAAGTTCAAATCGTTATGACTATTTGTGCAATTATTTAT
63 TTTAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* * * * * *
22931 TTCAAATTGTTATGACCTTTTTTTTTGTTATAAGACAA-TAGTTTTTGTTCATAT
128 TTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTA-TTTTTATTCATAC
* * * * * * *
22985 AAGCTTAGTCGAATTAAAATAATACCAATTTATTAATATTTCAACAATTAATAAGTAAAAAATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * * * *
23050 TAAAAATAAATATGCTTACTGAACTAGATCAAATAGTCATGACCATTT-AACTAATTATCTATTT
66 AAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAA-TAATTATCTATTT
* * ** * ** * **
23114 CGAATGGTTATGATATTTTCTTTCATCATAAAAAAATTATTTCAATTCATAC
130 CAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * *
23166 AAGCTTATTTGAAATAAAATAATACTAAGTTATTAATATTAT-GAAAATTAATAATTAAGAGA-T
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTAAGAGATT
* * * * * * *
23229 TAAGAAAATGAATCTGTTT-GTCGAA-TAAGTTTAAATAATTTTGACTATTTTG-ATAATTATCT
65 TAA-AAAATAAATTTGTTTACT-AAACT-AGTTCAAATAGTTATGACTA-TTTGAATAATTATCT
* * * ** *
23291 ATTTGAAATCACTGTA--AACTTTTGTTTTGTCATAAAATGATT-TTTTCTGTTCATAC
126 ATTTCAAAT-AGT-TATGACCTTTTGTTTTGTCATAAAACAATTATTTT-TATTCATAC
* *
23347 AAGCTTATTTTG-AATAAAATAATA-TAAATTTATT-A-ATTT-AAGGCAATTAATAAGTAAAAG
1 AAGCTTA-TTTGAAATAAAATAATACT-AATTTATTAATATTTCAA--AAATTAATAAGTAAGAG
* * * * * ** * *
23407 ATTTAAAAAATAAATCTATTTATTGAAC-AATATCAAATCTTTATGACTATTTGAAAAATTATTT
62 ATTTAAAAAATAAATTTGTTTACTAAACTAGT-TCAAATAGTTATGACTATTTGAATAATTATCT
* * * * * * * *
23471 ATTTTAAATTGGTATGA-CTTTTGTCTTATCATAAAATAATTGTTTTT-GTCATAC
126 ATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * * ** * *
23525 ATGTTTATTTCG-ATTAACAA-AATATTAATTTATTAATATTTTGACAATTAATAAGT-AGAATA
1 AAGCTTATTT-GAAATAA-AATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAG-AGA
* ** * * * * * *
23587 TTTAAAAAATAAATATGTTTTTTGAACAAGTTCAACTAGTCATAATTATTTGAATAATTATCTAT
63 TTTAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* * *
23652 TTCAAATCA-TTATGACCTTTTATTTTGTAATAAAACAATTA-TTTTAGTTCATAT
128 TTCAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTA-TTCATAC
* * * * * * *
23706 AAGCTTATTTGAAATAAAATACTACTAATTTTTTAATATTCCAAAAATTAATGAGAAAGAAAATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
** * * *
23771 AAAAAAGGAATCTT-ATTACCT-AAC-ATGTTCAAATAGTTATGACTATCTGAATTATTATCTAT
66 AAAAAATAAAT-TTGTTTA-CTAAACTA-GTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* * * * * *
23833 TTCAAATCA-TTGTGACCTTTTATTTTGTAATAAAACAACT-GTTTTAGTTCATAT
128 TTCAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTA-TTCATAC
* * * * *
23887 ACA-CTTATTTGAAATAAAATAATACTAATTTATTAATA-TTCTAGAAATTAATGAGAAAAAGAA
1 A-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGAT
* *
23950 TTAAAAAATAAATCTTG-TTACCTAAAC-ATGTTCAAATAGTTATGACTGTATGAATAATTATCT
64 TTAAAAAATAAAT-TTGTTTA-CTAAACTA-GTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * ** * *
24013 ATTTTAAAATA-TTATGACATTTTGTTTTGTCATAAAACATTTGGTTCTATTCATGC
126 A-TTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * *
24069 AAGCATATTTTG-AATAAAATAATA-AAATTTTATTAATATTTCAAAAATTAATAAGTAA-AAAT
1 AAGCTTA-TTTGAAATAAAATAATACTAA-TTTATTAATATTTCAAAAATTAATAAGTAAGAGAT
* * * *
24131 TT-TAAAATAAA------TA-T--A-T-TTTCAAATAGTTATGACTATTTAAACAATTATCTATT
64 TTAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATT
* * * * * * *
24184 TCAAATTGTTATGACATTTTGTTTTGTCATAAACCAATTGTTTCTATTTATAA
129 TCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * * *
24237 AAGCTTATTTGAAATGAAATAATACTAACTTATTAAAATTCCAAAAATTAATAAGTAAAAGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * *
24302 AAAAAATAAATTTGTTTA-TCGAGCAAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTT
66 AAAAAATAAATTTGTTTACT-AAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * * *
24366 CAAATCA-TTATGATCTTTTGTTTTGTCATAAAATAATTGTTTCTATTCATAC
130 CAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * *
24418 AAGTTTATTCGAAATAAAATAATATTAATTTATTAATATTTTAAAAATTAATAAGTTGAA-A-AT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-T-AAGAGAT
* * * * * * *
24481 TTAAAAGATAAATTTGTTCACCAAGCAAGCTT-AAATAGTTATGTCCATTTGAACT-ATTATCTA
64 TTAAAAAATAAATTTGTTTACTAAACTAG-TTCAAATAGTTATGACTATTTGAA-TAATTATCTA
* * ** * * *
24544 TATT-AAATTGTTATTATATTTTGTTTTGTCATAAAATAATTGTTTCTATTCATAC
127 T-TTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
** **
24599 AAAATTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT-A--AA-AGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * * * * * * * * * *
24660 AAAAACTAAATCTT-TATATTGAACCAATTCAAATAATTATAATTTTTTAAACAATTATCTATCT
66 AAAAAATAAAT-TTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * *
24724 CAAATCA-TTATGA--TATTT-TTTTGTCATAAAGCAATTGTTTTTGTTCATAC
130 CAAAT-AGTTATGACCT-TTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * * *
24774 AAGCTTATTTGGAGTAAAATATTGA-TAAATTAATAATA-TTCTAAAAATTAAT-A--AA-AGAT
1 AAGCTTATTTGAAATAAAATAAT-ACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGAT
* * * * ** * ** * * *
24833 TTAAAAAATAAATGTGTTTGCCAAACTAATTCAAATAAATAAGAAAATTAGAACAGTTATCTATT
64 TTAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATT
* * * * * * *
24898 TTAAATCGTTTTGACCTTTTG-CTTGTCATAAAA-TAGTATTTTCAGTTCATAC
129 TCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTA-TTCATAC
* * * * ** * *
24950 ATGCTTATTTAAAATAAAATAATACTAATTTATTCACA-TTCAGAAAATTAATAAAAAACAAATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAAGAGA-T
* *
25014 TTAAAAAATAAATTTGTTTA-TCAAACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTAT
64 TTAAAAAATAAATTTGTTTACT-AAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* *** * * * * *
25078 TTAAAATAAAAATGACCTTTTGTTTTATCATAAAATAATT-TTTTCAATTTATAA
128 TTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTT-TATTCATAC
* * * * * *
25132 AAGCTTATCTGAAATAAAATAATATTACTTTATTAATACTTCAAAAATTGATATA-TTAGAGATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATA-AGTAAGAGATT
* * * * * * *
25196 TAAAAAATACA------T-C-GAACTAGTTCAAATAATTATGGCCATTTGAACAATTATATATTT
65 TAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
** * * * *
25253 CAAATCA-TTACAAACTTTTGTTTTTTTCATAAAATAATTGTTTTTCA-TCATAC
130 CAAAT-AGTTATGACCTTTTG-TTTTGTCATAAAACAATTATTTTT-ATTCATAC
* * * * * * * * * *
25306 AAACCTATTTGGAACAAAATAGTATTAGTTTATTAAAATTTAAAAAATTAAT-AGGAAGGAGATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAA-GAGATT
* * * * * * *
25370 TAAAAAATATATCTATTTACT-GA--A--TC--A-A--T-T-CCTATTTAAACAATTATCTATTT
65 TAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTA-TT
* * * * * * ** * * ** * *
25423 TTAAATTGTTGTAACCTTTTGTTCTATTGTAAAATAATTGTTTCAATTCGTAT
129 TCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * * * *
25476 GAGCTTATTTGGAATAAAATAATACTAATTTAATAATATTCCCAAAATTAATAACTAAGAGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * * * * * * * *
25541 AAAAAATAAATTTGTTTGCTGAAGTAGCTCAAACAATTAAGACTATATGGACAATTATCTATTTG
66 AAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
** * * * ** * *
25606 AAATCA-TTATGACAATTTATTTTATCATAAAACAATTGTTTCAAGTCATAG
131 AAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
** * * * **
25657 AAGCTTATTCAAAATAAAATAATATTAATTTATTAATATTCCAAAAATTAATAGGTAAGTTATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * * * * * *
25722 AAAAAGTGAATCTGTTTATCGAATC-AATTTAAATAATTATGATTATGTT--ATCAATTATCTAT
66 AAAAAATAAATTTGTTTA-CTAAACTAGTTCAAATAGTTATGACTAT-TTGAAT-AATTATCTAT
* * * * * * *
25784 TTCAAATTGTTATTACCTTTTGTTTTGTCATATAACAATTGTATTTGA-ACATTC
128 TTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTAT-TTTTATTCATAC
** * * * * *
25838 AATTTTATTCGCAATACAATAATACT-ATTTATTAATCTTTTAAAAATTAATAAGTAAGAGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* * * * * * * * ** *
25902 AAAAAATAAATCTATTTACTGAACTAGTTCAAACAGTAATGACTATTTAAACAATTGTAAACTTC
66 AAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
* * * * *
25967 AAATTGTTATAACCTTTTGTTTTATCATAAAATAATTTTTTTTTATTCATAC
131 AAATAGTTATGACCTTTTGTTTTGTCATAAAACAA-TTATTTTTATTCATAC
* * * * *
26019 AAGCTTATTCGAAATAAAATAATACTAATATAATAATATTAT-GAAAATTAA-AAGATAAGAGAA
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATT-TCAAAAATTAATAAG-TAAGAGAT
* ** * * * * * *
26082 TTAAAAAATAAATTTATTTACCGAA-TCAGTTCCAATATTTAAGACTATATGAACAGTTATCTAT
64 TTAAAAAATAAATTTGTTTACTAAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCTAT
* * *
26146 TTCAAATCGTTATGACCTTTTGTTTTGTCATAAAATAAAATT-TTTTAAATTCATA-
128 TTCAAATAGTTATGACCTTTTGTTTTGTCAT-AAA-ACAATTATTTT-TATTCATAC
* * * ** *
26201 ATAGCTTACTTGGAATAAAATAAAAAAAATTTATTAATATTTCAAAAATAAATAAGTAAGAGATT
1 A-AGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATT
* * * *
26266 TAAAAAAT-AATTCTATTTAC----CTA-TTCAAATAATTATGATTATTTGAACAATTATCTATT
65 TAAAAAATAAATT-TGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATT
** * * * *
26325 TCAAATCA-TTATGACCTTTTGTTTCATCAAAAAACAAATGTTTTTATTCATAT
129 TCAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * * *
26378 AAGGTTTTGTTCAGAATAAAATAATACT-ATCTATTTAATATTTTC--AAA-TATTAA-TAAGAG
1 AAGCTTAT-TTGA-AATAAAATAATACTAATTTA-TTAATA-TTTCAAAAATTAATAAGTAAGAG
* * * * *
26438 ATTTAAAAAATAAATCTATTTA-TCAAACTAGTTCAAATAGTTTTGACTACTTTG-GTAATTATT
62 ATTTAAAAAATAAATTTGTTTACT-AAACTAGTTCAAATAGTTATGACTA-TTTGAATAATTATC
* * ** * * *
26501 TATTTTAAAT-CTTATGAATTTTTGTATTTGTTATTAAAATAGATTGTTTTCTATTCATAC
125 TATTTCAAATAGTTATGACCTTTTGT-TTTGTCA-TAAAACA-ATTATTTT-TATTCATAC
* * * * *
26561 ATGCTTATTTGGACTAAAATAATACTAATTTATTAATATTTTCAAGCAATT-GTAAGTAA-A-A-
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATA-TTTCAA-AAATTAATAAGTAAGAGAT
* * * * * * *
26622 -TAAAAAATAAATATGTCTGACTGAACTAGATCAAATAATCATTGA-T-TTTGAATGATTATCTA
64 TTAAAAAATAAATTTGT-TTACTAAACTAGTTCAAATAGTTA-TGACTATTTGAATAATTATCTA
* * *
26684 TTTCAAATCACTTATGACCTTTTGTTTTGCTCATAGAA-GA--ATTTTTAGTTCATA-
127 TTTCAAAT-AGTTATGACCTTTTGTTTTG-TCATAAAACAATTATTTTTA-TTCATAC
** * * *
26738 AAGCTTATTCAAAATAAAATTAATA-TAATTTA-TAGTAATTCAAAAATTAATAA-TAAAGAAAT
1 AAGCTTATTTGAAATAAAA-TAATACTAATTTATTAATATTTCAAAAATTAATAAGT-AAGAGAT
* * * * * * *
26800 TTAAAAGATGAATCTGGTTACTGAAA-AAGTT-ATAATAGATATATAACTATTTGAACAATTATC
64 TTAAAAAATAAATTTGTTTACT-AAACTAGTTCA-AATAG-T-TATGACTATTTGAATAATTATC
* * * * * **
26863 TATTTGAAATAGCTATAACCTTTTGTTTTGTCACAAAAGAATT-TTACCTATTCATAC
125 TATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATT-TTTATTCATAC
* * * * * *
26920 AATCTTATTTCAAATAATATAA-ATCAAATTTATTAATA-TT-AAGACAATTAAAAATGTAAAAG
1 AAGCTTATTTGAAATAAAATAATA-CTAATTTATTAATATTTCAA-A-AATTAATAA-GTAAGAG
* * ** *
26982 ATTTAAAAAATAAATTTGTTTACCAAACAAGTTCAAATCA-TTATGACTATTTGTGTAATTATTT
62 ATTTAAAAAATAAATTTGTTTACTAAACTAGTTCAAAT-AGTTATGACTATTTGAATAATTATCT
* * * * * * * * **
27046 ATTTCAACTTGTTATGGCTTTTTGTTTTATCATAAAATAATTGTTTCTGCTCATAC
126 ATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * ** * * *
27102 AAGTTTATTT-AGATCAAAATAATATTAAATTTATTAATATTTTGACAATTAATAAGGAAAAGAT
1 AAGCTTATTTGAAAT-AAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGA-
** * *
27166 TTTAAAAAATAAATACGTTTGAC-AAA-TAAGTTCAAATAGTCATGACTATTTAAATAATTATCT
63 TTTAAAAAATAAATTTGTTT-ACTAAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * * * *
27229 ATTTCAAATCA-TTATGACTTTTTATTTTGTAATAAAACAATT-GTTTCAGTTCATAT
126 ATTTCAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTA-TTCATAC
* ** * **
27285 AAGTTTATTTGAAGCAAAATAATACTAATTTATTAATATTCCAAAAATTAATAAGTAAGAGAACA
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAG-ATT
* * *** ** *
27350 AAAAAAAAAGAATCCATTTACCGAA-TAAGTTCAAATAGTTATGACTATATGAATAATTATCTAT
65 TAAAAAATA-AATTTGTTTACTAAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCTA-
* * * * * *
27414 TTTAAAATA-TTATGACCTTTCGTTTTG-CCTCAAAATAATTGA-TTTTGTTCATGC
127 TTTCAAATAGTTATGACCTTTTGTTTTGTCAT-AAAACAATT-ATTTTTATTCATAC
* *
27468 AAGCTTATTTTG-AATAAAATAAT-TTAAATTTATTAATATTCCAAAAATTAATAAG-AA-A-A-
1 AAGCTTA-TTTGAAATAAAATAATACT-AATTTATTAATATTTCAAAAATTAATAAGTAAGAGAT
** ** *** * * *
27527 --AAAATGT-TTTTTGAACACATTCAAA-TAGTT-ATGACTA-TT-TGAAC-AATT--ATCTATT
64 TTAAAAAATAAATTTGTTTAC--T-AAACTAGTTCA--AATAGTTATG-ACTATTTGAAT-AATT
* * ** * ** * *
27582 -T------CAAAT-CTTATGATCTTTTGTTTCATCAT-AAACTAATTGTTTTTGCTCAAAA
122 ATCTATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAAC-AATTATTTTTATTCATAC
* * * *
27634 AAACTTATTCGAAATAGAAATAATACTAATTTATTAAAATTAT-AAAAATTAATAAGTAAAAGAT
1 AAGCTTATTTGAAATA-AAATAATACTAATTTATTAATATT-TCAAAAATTAATAAGTAAGAGAT
* * * * *
27698 TTAAAAAATAAATCTGTTTA--ACGAGTGAGTTCAAATAGTTATGACTATTTGAACAATTATTTA
64 TTAAAAAATAAATTTGTTTACTA-AACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCTA
** * * *
27761 TTTCAAATCA-TTATGATATTTTGTTTTGTCATAAAACAATTGTTTCTATTCATAA
127 TTTCAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
* * * *
27816 AAGTTTATTCGAAATAAAATAATTCTAATTTATTAATA-TTCTAAAAATTAATAAGT-TGAAGAT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAG-AGAT
* * * * * * *
27879 TTAAAAAATAAATATGTTTGCTGAACAAATTCAAATAGTCAT-ATCCATTTGAACT-ATTATCTA
64 TTAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGA-CTATTTGAA-TAATTATCTA
* * **
27942 TTTCAAATCA-TTATGGCATTTTGTTTTGTTGTAAAACAA-T-TTTTTATTCATAC
127 TTTCAAAT-AGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
** * ** * * *
27995 AAAATTAGTT-AGAATCTAGTAATACGAATTTATTAATATTTCAAAAATT-AT---TAAGACATT
1 AAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATT
** * * * * * * *
28055 TAAAAGCTAAATCTGTTTACCAAACCAGTTTAAATAGTTATGACTATTTCAACAATTATCTATCT
65 TAAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * * *
28120 CAAATAG-TATGATC-TTTGTTTTGTCATAAAACAAATTGTTTCTATTCATGC
130 CAAATAGTTATGACCTTTTGTTTTGTCATAAAAC-AATTATTTTTATTCATAC
* * * * *
28171 AAGCTTGTTTTG-AATAAAATAATGCTAAATTAATAATA-TTCTAAAAATTAATGAGTAAGAGAT
1 AAGCTT-ATTTGAAATAAAATAATACTAATTTATTAATATTTC-AAAAATTAATAAGTAAGAGAT
* * ** * * * * *
28234 TTAAAAAATAAATGTGCTTGTTGAACCAGTT-ATAATAGTTAAGACTATTAGAATAATTGTCTAT
64 TTAAAAAATAAATTTGTTTACTAAACTAGTTCA-AATAGTTATGACTATTTGAATAATTATCTAT
* ** *
28298 TTCAAATCA-TTTTGACCTTTTGTTTTGT--TAGAAA-TTTTTTTTTTAGTTCATAC
128 TTCAAAT-AGTTATGACCTTTTGTTTTGTCATA-AAACAATTATTTTTA-TTCATAC
* * * * * * *
28351 AAGCTAATTTGAAATTAAAGAATA-TAATTATATTGACA-TTCAGAAAATTAATAAGCAAGAAAT
1 AAGCTTATTTGAAATAAAATAATACTAATT-TATTAATATTTCA-AAAATTAATAAGTAAGAGA-
* * * * * *
28414 TTTTAAAAAATAAATCTGTGTACTGAA-TAAGTTTAAATAGTTATGACTATTTGAACAATTAACT
63 -TTTAAAAAATAAATTTGTTTACTAAACT-AGTTCAAATAGTTATGACTATTTGAATAATTATCT
* * * * * *
28478 ATTTAAAATTGTTATAAACTTTTGTTTTATCATAAAACAATTA-TTTTAGTTTAATAC
126 ATTTCAAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTA--TTCATAC
*** * * * * **
28535 AA-CTTATCCAAAATAAAATAATATTACTTTATTAATATTTCAAAAATTGAGAAGTTGGAGATTT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
** * * * * *
28599 AAAAAATAAATCAGTTTA-TCGAATTAGTTCAAATAATTATGGCTATTTGAACAATTATCTATTT
66 AAAAAATAAATTTGTTTACT-AAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
* * * * *
28663 CAAATCGTTATGAACTTTTTATTTTGTTATAAAACAATTGTTTTTCA-TCATAC
130 CAAATAGTTATG-ACCTTTTGTTTTGTCATAAAACAATTATTTTT-ATTCATAC
* * * * * * *
28716 AAGGTTATTTGGAATAAAATAATATTAATTTATTAATATTTCAAAAACTAATAAATAGGAGAATT
1 AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
* ** ** * * * * *
28781 AAAAAATAAATATACTTA-TCGGACCAGTTTAAATAGTTATTACTATTTAAATAATTATATATTT
66 AAAAAATAAATTTGTTTACT-AAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTT
28845 CAAAT
130 CAAAT
28850 CATAAAATAA
Statistics
Matches: 5541, Mismatches: 1176, Indels: 786
0.74 0.16 0.10
Matches are distributed among these distances:
165 6 0.00
166 40 0.01
167 46 0.01
168 116 0.02
169 10 0.00
170 112 0.02
171 33 0.01
172 95 0.02
173 167 0.03
174 160 0.03
175 314 0.06
176 239 0.04
177 194 0.04
178 189 0.03
179 248 0.04
180 417 0.08
181 1691 0.31
182 917 0.17
183 457 0.08
184 82 0.01
185 8 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (181 bp):
AAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGAGATTT
AAAAAATAAATTTGTTTACTAAACTAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTC
AAATAGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTTTATTCATAC
Found at i:27232 original size:16 final size:17
Alignment explanation
Indices: 27211--27243 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27201 ATAGTCATGA
27211 CTATTT-AAATAATTAT
1 CTATTTCAAATAATTAT
*
27227 CTATTTCAAATCATTAT
1 CTATTTCAAATAATTAT
27244 GACTTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.48
Consensus pattern (17 bp):
CTATTTCAAATAATTAT
Found at i:27273 original size:183 final size:181
Alignment explanation
Indices: 25452--27507 Score: 811
Period size: 183 Copynumber: 11.4 Consensus size: 181
25442 TGTTCTATTG
** * ** * * *
25452 TAAAATAATTGTTTCAATTCGTATGAGCTTATTTGGAAT-AAAATAATACT-AATTTAATAATAT
1 TAAAATAATTGTTTCTGTTCATACAAGTTTATTT-GAATCAAAATAATATTAAATTTATTAATAT
*** * * * ** * * * * * *
25515 TCCCAAAATTAATAACTAAGAGATTTAAAAAATAAATTTGTTTGCTGAAGT-AGCTCAAACAATT
65 TAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATACGTTTAC-CAAATAAGTTCAAATAGTT
* * * * * ** * *
25579 AAGACTATATGGACAATTATCTATTTGAAATCATTATGACAATTTATTTTATCA
129 ATGACTATTTGAATAATTATCTATTTCAAAT-ATTATGACTTTTTGTTTTGTCA
* * * * **
25633 TAAAACAATTGTTTCAAG-TCATAGAAGCTTATTCAAAAT-AAAATAATATT-AATTTATTAATA
1 TAAAATAATTGTTTC-TGTTCATACAAGTTTATT-TGAATCAAAATAATATTAAATTTATTAATA
* *** * * * * *
25695 TTCCAA-A-AATTAATAGGTAAGTTATTTAAAAAGTGAAT-CTGTTTATCGAATCAA-TTTAAAT
64 TT--AAGACAATTAATAAGTAAAAGATTTAAAAAATAAATAC-GTTTACCAAAT-AAGTTCAAAT
* * * * *
25756 AATTATGATTATGTT--ATCAATTATCTATTTCAAATTGTTATTACCTTTTGTTTTGTCA
125 AGTTATGACTAT-TTGAAT-AATTATCTATTTCAAA-TATTATGACTTTTTGTTTTGTCA
* * ** * * * * *
25814 TATAACAATTGTATT-TGAACATTCAATTTTATTCGCAAT-ACAATAATACT--ATTTATTAATC
1 TAAAATAATTGT-TTCTGTTCATACAAGTTTATTTG-AATCAAAATAATATTAAATTTATTAA--
* * * * * *
25875 TTTTAA-A-AATTAATAAGTAAGAGATTTAAAAAATAAAT-CTATTTACTGAACT-AGTTCAAAC
62 TATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATAC-GTTTAC-CAAATAAGTTCAAAT
* * * * ** * * * * *
25936 AGTAATGACTATTTAAACAATTGTAAACTTCAAATTGTTATAACCTTTTGTTTTATCA
125 AGTTATGACTATTTGAATAATTATCTATTTCAAA-TATTATGACTTTTTGTTTTGTCA
* * * * * * * *
25994 TAAAATAATTTTTTTTTATTCATACAAGCTTATTCGAAAT-AAAATAATACT-AATATAATAATA
1 TAAAATAA-TTGTTTCTGTTCATACAAGTTTATTTG-AATCAAAATAATATTAAATTTATTAATA
* * * * *** * * * *
26057 TTATGAAAATTAA-AAGATAAGAGAATTAAAAAATAAATTTATTTACCGAATCAGTTCCAATATT
64 TTAAGACAATTAATAAG-TAAAAGATTTAAAAAATAAATACGTTTACCAAATAAGTTCAAATAGT
* * * * * *
26121 TAAGACTATATGAACAGTTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCA
128 TATGACTATTTGAATAATTATCTATTTCAAAT-ATTATGACTTTTTGTTTTGTCA
* *** * * **
26176 TAAAATAAAATTTTTTAAATTCATA-ATAGCTTACTTGGAAT-AAAATAA-AAAAAATTTATTAA
1 TAAAAT--AATTGTTTCTGTTCATACA-AGTTTA-TTTGAATCAAAATAATATTAAATTTATTAA
* * * *
26238 TATTTCAA-A-AATAAATAAGTAAGAGATTTAAAAAAT-AATTCTATTTACC---T-A-TTCAAA
62 TA-TT-AAGACAATTAATAAGTAAAAGATTTAAAAAATAAATAC-GTTTACCAAATAAGTTCAAA
* * * * **
26295 TAATTATGATTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTCATCA
124 TAGTTATGACTATTTGAATAATTATCTATTTCAAAT-ATTATGACTTTTTGTTTTGTCA
* * * * * * * *
26354 AAAAACAAATGTTTTTATTCATATAAGGTTT-TGTTCAGAAT-AAAATAATACT--ATCTATTTA
1 TAAAATAATTGTTTCTGTTCATACAA-GTTTAT-TT--GAATCAAAATAATATTAAATTTA-TTA
** * * * * *
26415 ATATT--TTCAAATATTAA-TAAGAGATTTAAAAAATAAAT-CTATTTATCAAACT-AGTTCAAA
61 ATATTAAGACAATTAATAAGTAAAAGATTTAAAAAATAAATAC-GTTTACCAAA-TAAGTTCAAA
* * * * * * *
26475 TAGTTTTGACTACTTTG-GTAATTATTTATTTTAAATCTTATGAATTTTTGTATTTGTTA
124 TAGTTATGACTA-TTTGAATAATTATCTATTTCAAATATTATGACTTTTTGT-TTTGTCA
* * * * *
26534 TTAAAATAGATTGTTTTCTATTCATACATGCTTATTTGGA-CTAAAATAATACT-AATTTATTAA
1 -TAAAATA-ATTG-TTTCTGTTCATACAAGTTTATTTGAATC-AAAATAATATTAAATTTATTAA
* * * * * *
26597 TATTTTCAAG-CAATT-GTAAGT-AAA-A--TAAAAAATAAATATGTCTGACTGAACT-AGATCA
62 TA--TT-AAGACAATTAATAAGTAAAAGATTTAAAAAATAAATACGT-TTAC-CAAATAAGTTCA
* * * *
26655 AATAATCATTGA-T-TTTGAATGATTATCTATTTCAAATCACTTATGACCTTTTGTTTTGCTCA
122 AATAGTTA-TGACTATTTGAATAATTATCTATTTCAAAT-A-TTATGACTTTTTGTTTTG-TCA
* * * * **
26717 TAGAAGAATT-TTT-AGTTCATA-AAGCTTATTCAAAAT-AAAATTAATA-T-AATTTATAGTAA
1 TAAAATAATTGTTTCTGTTCATACAAGTTTATT-TGAATCAAAA-TAATATTAAATTTAT--TAA
* * * * * *
26776 T-TCAA-A-AATTAATAA-TAAAGAAATTTAAAAGATGAAT-CTGGTTACTGAAA-AAGTT-ATA
62 TATTAAGACAATTAATAAGTAAA-AGATTTAAAAAATAAATAC-GTTTAC-CAAATAAGTTCA-A
* * * * * *
26834 ATAGATATATAACTATTTGAACAATTATCTATTTGAAATAGCTATAACCTTTTGTTTTGTCA
123 ATAG-T-TATGACTATTTGAATAATTATCTATTTCAAATA-TTATGACTTTTTGTTTTGTCA
* * * * * * *
26896 CAAAAGAATT-TTACCTATTCATACAA-TCTTATTTCAAAT-AATATAA-ATCAAATTTATTAAT
1 TAAAATAATTGTT-TCTGTTCATACAAGT-TTATTT-GAATCAAAATAATATTAAATTTATTAAT
* ** *
26957 ATTAAGACAATTAAAAATGTAAAAGATTTAAAAAATAAATTTGTTTACCAAACAAGTTCAAATCA
63 ATTAAGACAATTAATAA-GTAAAAGATTTAAAAAATAAATACGTTTACCAAATAAGTTCAAAT-A
** * * * * *
27022 -TTATGACTATTTGTGTAATTATTTATTTCAACTTGTTATGGCTTTTTGTTTTATCA
126 GTTATGACTATTTGAATAATTATCTATTTCAA-ATATTATGACTTTTTGTTTTGTCA
*
27078 TAAAATAATTGTTTCTGCTCATACAAGTTTATTT-AGATCAAAATAATATTAAATTTATTAATAT
1 TAAAATAATTGTTTCTGTTCATACAAGTTTATTTGA-ATCAAAATAATATTAAATTTATTAATAT
** *
27142 TTTGACAATTAATAAGGAAAAGATTTTAAAAAATAAATACGTTTGA-CAAATAAGTTCAAATAGT
65 TAAGACAATTAATAAGTAAAAGA-TTTAAAAAATAAATACGTTT-ACCAAATAAGTTCAAATAGT
* * * *
27206 CATGACTATTTAAATAATTATCTATTTCAAATCATTATGACTTTTTATTTTGTAA
128 TATGACTATTTGAATAATTATCTATTTCAAAT-ATTATGACTTTTTGTTTTGTCA
* * * * *
27261 TAAAACAATTGTTTCAGTTCATATAAGTTTATTTGAAGCAAAATAATACT-AATTTATTAATATT
1 TAAAATAATTGTTTCTGTTCATACAAGTTTATTTGAATCAAAATAATATTAAATTTATTAATATT
* *** * * * *
27325 CCAA-A-AATTAATAAGTAAGAGAACAAAAAAAAAAGAATCCATTTACCGAATAAGTTCAAATAG
66 --AAGACAATTAATAAGTAAAAG-ATTTAAAAAATA-AATACGTTTACCAAATAAGTTCAAATAG
* * * * *
27388 TTATGACTATATGAATAATTATCTATTTTAAAATATTATGACCTTTCGTTTTG-CC
127 TTATGACTATTTGAATAATTATCTA-TTTCAAATATTATGACTTTTTGTTTTGTCA
* *
27443 TCAAAATAATTGATTT-TGTTCATGCAAGCTTATTTTGAAT-AAAATAAT-TTAAATTTATTAAT
1 T-AAAATAATTG-TTTCTGTTCATACAAGTTTA-TTTGAATCAAAATAATATTAAATTTATTAAT
27505 ATT
63 ATT
27508 CCAAAAATTA
Statistics
Matches: 1445, Mismatches: 299, Indels: 260
0.72 0.15 0.13
Matches are distributed among these distances:
174 5 0.00
175 33 0.02
176 26 0.02
177 32 0.02
178 103 0.07
179 53 0.04
180 174 0.12
181 291 0.20
182 286 0.20
183 369 0.26
184 61 0.04
185 12 0.01
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (181 bp):
TAAAATAATTGTTTCTGTTCATACAAGTTTATTTGAATCAAAATAATATTAAATTTATTAATATT
AAGACAATTAATAAGTAAAAGATTTAAAAAATAAATACGTTTACCAAATAAGTTCAAATAGTTAT
GACTATTTGAATAATTATCTATTTCAAATATTATGACTTTTTGTTTTGTCA
Found at i:27508 original size:183 final size:183
Alignment explanation
Indices: 27190--27871 Score: 455
Period size: 183 Copynumber: 3.8 Consensus size: 183
27180 ACGTTTGACA
* * * *
27190 AATAAGTTCAAATAGTCATGACTATTTAAATAATTATCTATTTCAAATCATTATGACTTTTTATT
1 AATAAGTTCAAATAGTCATGACTATATAAATAATTATCTATTTAAAATCATTATGACCTTTCATT
* *
27255 TTGTAATAAAACAATTGTTTCAGTTCATATAAGTTTATTTGAAGCAAAATAATACTAATTTATTA
66 TTGTAATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAGCAAAATAATACTAATTTATTA
27320 ATATTCCAAAAATTAATAAGTAAGAGAACAAAAAAAAAAGAATCCATTTACCG
131 ATATTCCAAAAATTAATAAGTAAGAGAACAAAAAAAAAAGAATCCATTTACCG
* * *
27373 AATAAGTTCAAATAGTTATGACTATATGAATAATTATCTATTTTAAAAT-ATTATGACCTTTCGT
1 AATAAGTTCAAATAGTCATGACTATATAAATAATTATCTA-TTTAAAATCATTATGACCTTTCAT
** * * * * *
27437 TTTG-CCTCAAAATAATTGATTT-TGTTCATGCAAGCTTATTTTGAA-TAAAATAAT-TTAAATT
65 TTTGTAAT-AAAACAATTG-TTTCAGTTCATACAAGCTTA-TTTGAAGCAAAATAATACT-AATT
* **
27498 TATTAATATTCCAAAAA-T--TAA-T-A-AG----AAAAAAAATG--T---TTT-TTG
126 TATTAATATTCCAAAAATTAATAAGTAAGAGAACAAAAAAAAAAGAATCCATTTACCG
* * * * * * * **
27540 AACACA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC-TTATGATCTTTTGT
1 AATA-AGTTCAAATAGTCATGACTATATAAATAATTATCTATTTAAAATCATTATGACCTTTCAT
** * ** * * * * * **
27603 TTCATCAT-AAACTAATTGTTTTTGCTCAAAAAAACTTATTCGAAATAGAAATAATACTAATTTA
65 TTTGTAATAAAAC-AATTGTTTCAGTTCATACAAGCTTATTTGAAGCA-AAATAATACTAATTTA
* ** * *** * ** *
27667 TTAAAATTATAAAAATTAATAAGTAAAAG-ATTTAAAAAATA-AATCTGTTTAACG
128 TTAATATTCCAAAAATTAATAAGTAAGAGAACAAAAAAAAAAGAATCCATTTACCG
* * * * * * * * ** **
27721 AGTGAGTTCAAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGATATTTTGTT
1 AATAAGTTCAAATAGTCATGACTATATAAATAATTATCTATTTAAAATCATTATGACCTTTCATT
* * * * ** *
27786 TTGTCATAAAACAATTGTTTCTA-TTCATAAAAGTTTATTCGAAATAAAATAATTCTAATTTATT
66 TTGTAATAAAACAATTGTTTC-AGTTCATACAAGCTTATTTGAAGCAAAATAATACTAATTTATT
*
27850 AATATTCTAAAAATTAATAAGT
130 AATATTCCAAAAATTAATAAGT
27872 TGAAGATTTA
Statistics
Matches: 407, Mismatches: 60, Indels: 66
0.76 0.11 0.12
Matches are distributed among these distances:
165 11 0.03
166 39 0.10
167 63 0.15
168 6 0.01
170 3 0.01
171 2 0.00
172 1 0.00
173 11 0.03
176 6 0.01
177 3 0.01
178 1 0.00
179 1 0.00
180 7 0.02
181 81 0.20
182 49 0.12
183 107 0.26
184 16 0.04
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (183 bp):
AATAAGTTCAAATAGTCATGACTATATAAATAATTATCTATTTAAAATCATTATGACCTTTCATT
TTGTAATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGAAGCAAAATAATACTAATTTATTA
ATATTCCAAAAATTAATAAGTAAGAGAACAAAAAAAAAAGAATCCATTTACCG
Found at i:28850 original size:182 final size:180
Alignment explanation
Indices: 27549--28852 Score: 998
Period size: 182 Copynumber: 7.2 Consensus size: 180
27539 GAACACATTC
**
27549 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATC-TTATGA-TCTTTTGTTTCATCAT-
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACT-TTTTGTTTTGTCATA
** * * * * *
27611 AAACTAATTGTTTTTGCTCAAAAAAACTTATTCGAAATAGAAATAATACTAATTTATTAAAATTA
65 AAAC-AATTGTTTTTATTCATACAAGCTTATTTGAAATA-AAATAATACTAATTTATTAATATT-
* * * * *** *
27676 T-AAAAATTAATAAGTAAAAGATTTAAAAAATAAATCTGTTTAACGAGTGAGTTC
127 TCAAAAATTAATAAGTAAGAGATTTAAAAAATAAATAT-CTTATCGAACCAGTTT
*
27730 AAATAGTTATGACTATTTGAACAATTATTTATTTCAAATCATTATGA-TATTTTGTTTTGTCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACT-TTTTGTTTTGTCATA
* * * * *
27794 AAACAATTGTTTCTATTCATAAAAGTTTATTCGAAATAAAATAATTCTAATTTATTAATA-TTCT
65 AAACAATTGTTTTTATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC-
* * * * *
27858 AAAAATTAATAAGT-TGAAGATTTAAAAAATAAATATGTT-TGCTGAACAAATTC
129 AAAAATTAATAAGTAAG-AGATTTAAAAAATAAATATCTTAT-C-GAACCAGTTT
* * * * * **
27911 AAATAGTCAT-ATCCATTTGAACTATTATCTATTTCAAATCATTATGGCATTTTGTTTTGTTGTA
1 AAATAGTTATGA-CTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATA
** * ** * *
27975 AAACAA-T-TTTTTATTCATACAAAATTAGTT-AGAATCTAGTAATACGAATTTATTAATATTTC
65 AAACAATTGTTTTTATTCATACAAGCTTATTTGA-AATAAAATAATACTAATTTATTAATATTTC
* ** * * * *
28037 AAAAATT-AT---TAAGACATTTAAAAGCTAAATCTGTTTACCAAACCAGTTT
129 AAAAATTAATAAGTAAGAGATTTAAAAAATAAATAT-CTTATCGAACCAGTTT
* * * *
28086 AAATAGTTATGACTATTTCAACAATTATCTATCTCAAAT-AGTATGA-TCTTTGTTTTGTCATAA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAA
* * * * * *
28149 AACAAATTGTTTCTATTCATGCAAGCTTGTTTTG-AATAAAATAATGCTAAATTAATAATA-TTC
66 AAC-AATTGTTTTTATTCATACAAGCTT-ATTTGAAATAAAATAATACTAATTTATTAATATTTC
* * * *
28212 TAAAAATTAATGAGTAAGAGATTTAAAAAATAAATGTGCTTGTTGAACCAG-TT
129 -AAAAATTAATAAGTAAGAGATTTAAAAAATAAATAT-CTTATCGAACCAGTTT
* * * * * *
28265 ATAATAGTTAAGACTATTAGAATAATTGTCTATTTCAAATCATTTTGACCTTTTGTTTTGT--TA
1 A-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATA
** * * * * * *
28328 GAAA-TTTTTTTTTTAGTTCATACAAGCTAATTTGAAATTAAAGAATA-TAATTATATTGACA-T
65 -AAACAATTGTTTTTA-TTCATACAAGCTTATTTGAAATAAAATAATACTAATT-TATTAATATT
* * * * **
28390 TCAGAAAATTAATAAGCAAGAAATTTTTAAAAAATAAATCTGTGTA-CTGAATAAGTTT
127 TCA-AAAATTAATAAGTAAGAGA--TTTAAAAAATAAATATCT-TATC-GAACCAGTTT
* * ** * *
28448 AAATAGTTATGACTATTTGAACAATTAACTATTTAAAATTGTTATAAAC-TTTTGTTTTATCATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTAT-GACTTTTTGTTTTGTCATA
* * *** * *
28512 AAACAATT-ATTTTAGTTTAATACAA-CTTATCCAAAATAAAATAATATTACTTTATTAATATTT
65 AAACAATTGTTTTTA--TTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTT
* * ** ** *
28575 CAAAAATTGAGAAGTTGGAGATTTAAAAAATAAATCAGT-TTATCGAATTAGTTC
128 CAAAAATTAATAAGTAAGAGATTTAAAAAATAAAT-A-TCTTATCGAACCAGTTT
* * * * *
28629 AAATAATTATGGCTATTTGAACAATTATCTATTTCAAATCGTTATGAACTTTTTATTTTGTTATA
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATG-ACTTTTTGTTTTGTCATA
* * *
28694 AAACAATTGTTTTTCA-TCATACAAGGTTATTTGGAATAAAATAATATTAATTTATTAATATTTC
65 AAACAATTGTTTTT-ATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTC
* * * * *
28758 AAAAACTAATAAATAGGAGAATTAAAAAATAAATATACTTATCGGACCAGTTT
129 AAAAATTAATAAGTAAGAGATTTAAAAAATAAATAT-CTTATCGAACCAGTTT
* * * *
28811 AAATAGTTATTACTATTTAAATAATTATATATTTCAAATCAT
1 AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCAT
28853 AAAATAATTA
Statistics
Matches: 883, Mismatches: 185, Indels: 109
0.75 0.16 0.09
Matches are distributed among these distances:
173 16 0.02
174 7 0.01
175 58 0.07
176 46 0.05
177 4 0.00
178 3 0.00
179 65 0.07
180 116 0.13
181 239 0.27
182 252 0.29
183 56 0.06
184 21 0.02
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (180 bp):
AAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACTTTTTGTTTTGTCATAA
AACAATTGTTTTTATTCATACAAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTTCAA
AAATTAATAAGTAAGAGATTTAAAAAATAAATATCTTATCGAACCAGTTT
Found at i:28896 original size:160 final size:160
Alignment explanation
Indices: 28714--29012 Score: 368
Period size: 160 Copynumber: 1.9 Consensus size: 160
28704 TTTTCATCAT
* * * * *
28714 ACAAGGTTATTTGGAATAAAATAATA-TTAATTTATTAATATT-TCAAAAACTAATAAATAGGAG
1 ACAAGCTTATTCGGAATAAAATAATACTT-ATCTAATAATATTATCAAAAAC-AATAAATAAGAG
* * * ** *
28777 AATTAAAAAATAAATATACTTATCGGACCAGTTTAAATAGTTATTACTATTTAAATAATTATATA
64 AATTAAAAAATAAATATACTTATCGAACCAATTCAAATAGTTAAGACTATATAAATAATTATATA
28842 TTTCAAATCATAAAATAATTATTTATGTTCAC
129 TTTCAAATCATAAAATAATTATTTATGTTCAC
* * * *
28874 ACAAGCTTATTCGGAATAAAATAATACTTATCTAATAATATTATGAAAATCAATAACTAAGAGAT
1 ACAAGCTTATTCGGAATAAAATAATACTTATCTAATAATATTATCAAAAACAATAAATAAGAGAA
* * * * * * *
28939 TTAAAAAATAAATTTATTTGTCGAACTAATTCAAATAGTTAAGGCTATATGAATAATTATCTATT
66 TTAAAAAATAAATATACTTATCGAACCAATTCAAATAGTTAAGACTATATAAATAATTATATATT
29004 TCAAATCAT
131 TCAAATCAT
29013 TATGACCTTT
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
160 107 0.93
161 8 0.07
ACGTcount: A:0.46, C:0.09, G:0.08, T:0.37
Consensus pattern (160 bp):
ACAAGCTTATTCGGAATAAAATAATACTTATCTAATAATATTATCAAAAACAATAAATAAGAGAA
TTAAAAAATAAATATACTTATCGAACCAATTCAAATAGTTAAGACTATATAAATAATTATATATT
TCAAATCATAAAATAATTATTTATGTTCAC
Found at i:29220 original size:20 final size:20
Alignment explanation
Indices: 29188--29225 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
29178 TTATTTCAAA
29188 TCATTATAACAATTTGTTTTG
1 TCATTATAACAA-TTGTTTTG
29209 TCATTA-AACAATTGTTT
1 TCATTATAACAATTGTTT
29226 CTATTGATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 5 0.29
21 6 0.35
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.50
Consensus pattern (20 bp):
TCATTATAACAATTGTTTTG
Found at i:29652 original size:177 final size:176
Alignment explanation
Indices: 29343--31673 Score: 678
Period size: 181 Copynumber: 12.7 Consensus size: 176
29333 TAGTTAAACA
* * *
29343 AATTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAAATATTATTAGATTAGTATTATTTTATT
1 AATTTATTTTTTAAATCTCTTAG-TATAAATTTT-AAAATATTAATAAATTAGTATTATTTTA-T
* * * * *
29408 TTGAATAAGCTTGTATGAATAGAAATAATTATTTTATGAGAAAACAAAAGGTTATAATAAATTAA
63 TTAAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTAA
*
29473 AATATATAATTGTTCAAATAGGT-ATAATAATTTGAAGTGGTTCCATAAAT
128 AATATATAATTGTTCAAATA-GTCATAAT-ATTTGAACTGGTTCCATAAAT
*
29523 AACTTTATTTTTTAAATCTCTTA-TA-AAATTTTAAAATATTAATAAATTAGTTTTATTTTATTA
1 AA-TTTATTTTTTAAATCTCTTAGTATAAATTTTAAAATATTAATAAATTAGTATTATTTTATT-
* * * * * *
29586 TGAATAAACTTGGATGAGTTGAAATAATTGTTTTATAACAAAACAAAAGGTTATAACAATTTAAA
64 TAAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTAAA
* * *
29651 ATAATAGATAATTATTCATATAGTCATAACTATTTGAACTGGTTCGATACACA-
129 AT-AT--ATAATTGTTCAAATAGTCATAA-TATTTGAACTGGTTCCATA-A-AT
* * * *
29704 AATTTATTTTTTAAATCTCTTAGTTATGAATTTTTAGAATATTATTAATTTAGTATTATTTTATT
1 AATTTATTTTTTAAATCTCTTAG-TAT-AAATTTTAAAATATTAATAAATTAGTATTATTTTATT
* * * * * ** *
29769 CCAAATAAATTTATATGAACAAAAATAATTATTTTATGACCGAACAAAAGGTTATAACAATTTGA
64 -TAAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTAA
* * * * ** *
29834 AATAGAGAATTGTTCTAATAGTCATAATTGTTTGAACTTATT-TAGTAAAT
128 AATATATAATTGTTCAAATAGTCATAA-TATTTGAACTGGTTCCA-TAAAT
* * * *
29884 AGATTTATTTTTTGAATCTC--A-TACTAATTTTTGAAATATTAATATATTAGTATTATTTTTAT
1 A-ATTTATTTTTTAAATCTCTTAGTA-TAAATTTTAAAATATTAATAAATTAGTATTA-TTTTAT
** * * * * *
29946 TTCAAATAAACTTGTAT-CTTCAAAAATTATTGTTTTATGACAAAATGAAAA-G-TACTACCAAT
63 TT-AAATAAACTTGTATGAAT-AGAAATAATTATTTTATGACAAAA-CAAAAGGTTA-TAACAAT
* ** * * * * * * * *****
30008 TTTATTTCAAACAAGCTTGTATGTTAAA-A-ACA-ATTGTTT-TA-TGACAAAATGAAAGGT
124 TTAAAAT-ATATAA--TTG--T-TCAAATAGTCATAATATTTGAACTGGTTCCAT-AAA--T
* * * * * * *
30065 AA-TAATGATTTGAAATAGATAATTA-TTTAAACTGATTTAGGAAACTGATTTATTTTTTAAATC
1 AATTTAT-TTTTTAAAT--CT-CTTAGTATAAA-T--TTTA--AAA-T-A-TTA----ATAAAT-
** * * * * *
30128 TCTTATTAATTTTTAAAATATTAATAAACTAGTATTATTTTATTTTGGATAAACTTTTGTGAACT
49 TAGTATT-A-TTTT---ATTTAAATAAACTTGTATGA----A---T--AGAAA------T-AA-T
* * * * * * * * *
30193 AAAACAATTTTTTATGATAAAACAAAA-GTTCATATCGATTTTAAATAGATAATTATTTAAATAG
92 -TAT------TTTATGACAAAACAAAAGGTT-ATAACAATTTAAAATATATAATTGTTCAAATAG
* * *
30257 TTATAGCTATTTGAACTTGTT-CAGTAAAT
149 TCATA-ATATTTGAACTGGTTCCA-TAAAT
* * * *
30286 AGATTTATTTTTCAAATCTCTT-GCTTATTAATTTTTTGAAA-GTTAATAAATTAGTATTATTTT
1 A-ATTTATTTTTTAAATCTCTTAG--TA-TAA-ATTTTAAAATATTAATAAATTAGTATTATTTT
* * * * * * * * * **
30349 CTTTCGAATAAGCTTGTTTGAACTA-AAACAATTATTTTATGACTAAACAAAAGCTCAAAATGAT
61 ATTT-AAATAAACTTGTATGAA-TAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAAT
* * * * * * * * * * *
30413 TTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAATTGATTCAACAAAC
124 TTAAAATATATAATTGTTCAAATAGTCATAA-TATTTGAACTGGTTCCATAAAT
* * *
30467 ACATTTATTTTTTAAAT-TATT--TATTAATTTTGAAAATATTATTAAATTAGTATTATTTTTAT
1 A-ATTTATTTTTTAAATCTCTTAGTATAAATTTT-AAAATATTAATAAATTAGTATTA-TTTTAT
* * * * * * * * ** *
30529 CTGAATTAACTTGTATG-ATCAGAAACAATTGTTTTATGACAAAA-TAAAGATCATAATGATTTG
63 TTAAATAAACTTGTATGAAT-AGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTA
* * * * * * * * *
30592 AGAT-TGATATTTGTCCAAATAGTCGTAACTATTAGAATTGCTT-TAGAAAAT
127 AAATAT-ATAATTGTTCAAATAGTCATAA-TATTTGAACTGGTTCCA-TAAAT
* * * * *
30643 AGCTTTAGTTTTTAAATCTCTTACTTAATAATTTTTAAAATATTAATAAAGTAGTATTATTTTAT
1 A-ATTTATTTTTTAAATCTCTTA-GT-ATAAATTTTAAAATATTAATAAATTAGTATTATTTTAT
* * * * * * *
30708 TTCAAAT--ACGTT-TATTAATTGAAACAATTGTTTTATGACAAGACAAAAAGTTAAAACAATTT
63 TT-AAATAAAC-TTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTT
* * * * * * * * * *
30770 TAAATAGATAATTGTTCAAATGGTCATATCTAATTAAAATTGTT-TAGTAAACA
126 AAAATATATAATTGTTCAAATAGTCATA-ATATTTGAACTGGTTCCA-TAAA-T
* * * * *
30823 AATTTATTTTTTTAAATCTCTT-GCTTATTAATTTTTAGAATGTTAATACATTAGTATTATTTTG
1 AATTTA-TTTTTTAAATCTCTTAG--TA-TAAATTTTAAAATATTAATAAATTAGTATTATTTTA
* ** * **
30887 TTCTGAATAAGTTTGTATGAACTA-AAATAA-TAGTTTTATGACTAAAA-AAAAGGTTACAATGA
62 TT-TAAATAAACTTGTATGAA-TAGAAATAATTA-TTTTATGAC-AAAACAAAAGGTTATAACAA
* * * * * *
30949 TTTGAAATAGATAATTGTTCAAATAGTCTTAATCTATTT-ATACTAGTTCGATAAAC
123 TTTAAAATATATAATTGTTCAAATAGTCATAA--TATTTGA-ACTGGTTCCATAAAT
* * * * * *
31005 ATATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTATTAAATTAGTATCATTTTAA
1 A-ATTTATTTTTTAAATCTCTTA-GTA-TAAATTTTAAAATATTAATAAATTAGTATTATTTTAT
** * * * * * * * * * * * * *
31070 TCGAATAAGCTTATGTGAAAAGAAACAATTGTTGTATGACAAAA-TAAAGATCATTACGATTTGA
63 TTAAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTAA
* * * *
31134 GATAGATAATTGTTCAAATAGTTATAACT-TTTGAACTGGTT-TAGTAAAT
128 AATATATAATTGTTCAAATAGTCATAA-TATTTGAACTGGTTCCA-TAAAT
* * * *
31183 AGATTTAGTTTTTAAATCT-TT--TATTAATTTTCAAAATATTAATAAATTTGTATTACTTTATT
1 A-ATTTATTTTTTAAATCTCTTAGTATAAATTTT-AAAATATTAATAAATTAGTATTATTTTATT
* ** * * * ** * *
31245 TCGAATAATTTTGTATGAACAGAAACAATTGTTTTACCACAAAACAAAAGGTCATAATAATTTAA
64 T-AAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTAA
** * ** ** *
31310 AATAGCTAATTGTTCAAATGGAT-ATAACTATTTGAACTTATTTGACAAAT
128 AATATATAATTGTTCAAATAG-TCATAA-TATTTGAACTGGTTCCATAAAT
* * * * ** *
31360 AGATATATTTTTTAAATCTCCTACCTATTAACTTGCAAAATATTAATAAAGTAGTATTATTTTAT
1 A-ATTTATTTTTTAAATCTCTTA-GTA-TAAATTTTAAAATATTAATAAATTAGTATTATTTTAT
* * * * * ** * *
31425 TCTGAATAAACTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGATCCTAACTATTTG
63 T-TAAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTA
* * * * * * * *
31490 AAATAAAAAATTGCTCAAACAGTCATAACAATTTGAGCT--TACTCAGTAAAC
127 AAATATATAATTGTTCAAATAGTCATAA-TATTTGAACTGGTTC-CA-TAAAT
* * * * * * *
31541 AGATTCATTTTATAAATCTTTTACTTATTAATTTTTGAAATATTAATAAACTAGTATTATTTTAT
1 A-ATTTATTTTTTAAATCTCTTA-GTA-TAAATTTTAAAATATTAATAAATTAGTATTATTTTAT
* * * * * * *
31606 TTCAAATAAGCTTGTATG--GACAAACAATTCA-TTTATCACAAAACAAAAGGTCATAACTATTT
63 TT-AAATAAACTTGTATGAATAGAAATAATT-ATTTTATGACAAAACAAAAGGTTATAACAATTT
*
31668 GAAATA
126 AAAATA
31674 AATAGAAAAT
Statistics
Matches: 1620, Mismatches: 374, Indels: 315
0.70 0.16 0.14
Matches are distributed among these distances:
173 6 0.00
174 26 0.02
175 40 0.02
176 112 0.07
177 200 0.12
178 127 0.08
179 129 0.08
180 196 0.12
181 369 0.23
182 124 0.08
183 25 0.02
184 92 0.06
185 3 0.00
187 4 0.00
188 1 0.00
189 5 0.00
190 1 0.00
191 1 0.00
192 3 0.00
196 7 0.00
197 6 0.00
198 6 0.00
199 1 0.00
200 12 0.01
201 4 0.00
204 2 0.00
205 11 0.01
207 4 0.00
208 2 0.00
209 9 0.01
210 5 0.00
214 3 0.00
215 1 0.00
216 1 0.00
217 1 0.00
218 8 0.00
219 4 0.00
220 5 0.00
221 6 0.00
222 16 0.01
223 17 0.01
224 24 0.01
225 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (176 bp):
AATTTATTTTTTAAATCTCTTAGTATAAATTTTAAAATATTAATAAATTAGTATTATTTTATTTA
AATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAATTTAAAAT
ATATAATTGTTCAAATAGTCATAATATTTGAACTGGTTCCATAAAT
Found at i:29817 original size:184 final size:180
Alignment explanation
Indices: 29337--29962 Score: 596
Period size: 177 Copynumber: 3.5 Consensus size: 180
29327 TACAAATAGT
*
29337 TAAACAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTCAAAATATTATTAGATTAGTATTAT
1 TAAACAAATTTATTTTTTAAATCTCTTAGTTA-TAATTTTTAAAATATTATTA-ATTAGTATTAT
* * * *
29402 TTTATTTTGAATAAGCTTGTATGAATAGAAATAATTATTTTATGAGAAAACAAAAGGTTATAATA
64 TTTATTATGAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACA
* * *
29467 AATTAAAAT-ATATAATTGTTCAAATAGGTATAATAATTTGAAGTGGTTCCA
129 ATTTAAAATAATATAATTATTCAAATAGGTATAATAATTTGAACTGGTTCCA
* * * * *
29518 TAAATAACTTTATTTTTTAAATCTCTTA--TA-AAATTTTAAAATATTAATAAATTAGTTTTATT
1 TAAACAAATTTATTTTTTAAATCTCTTAGTTATAATTTTTAAAATATT-ATTAATTAGTATTATT
* * * * *
29580 TTATTATGAATAAACTTGGATGAGTTGAAATAATTGTTTTATAACAAAACAAAAGGTTATAACAA
65 TTATTATGAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAA
* *
29645 TTTAAAATAATAGATAATTATTCATATA-GTCATAACT-ATTTGAACTGGTTCGA
130 TTTAAAATAAT--ATAATTATTCAAATAGGT-ATAA-TAATTTGAACTGGTTCCA
* *
29698 TACACAAATTTATTTTTTAAATCTCTTAGTTATGAATTTTTAGAATATTATTAATTTAGTATTAT
1 TAAACAAATTTATTTTTTAAATCTCTTAGTTAT-AATTTTTAAAATATTATTAA-TTAGTATTAT
*** * * * * **
29763 TTTATTCCAAATAAATTTATATGAACAAAAATAATTATTTTATGACCGAACAAAAGGTTATAACA
64 TTTATTATGAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACA
* * * * * ** ** *
29828 ATTTGAAAT-AGAGAATTGTTCTAATA-GTCATAATTGTTTGAACTTATT-TA
129 ATTTAAAATAATATAATTATTCAAATAGGT-ATAATAATTTGAACTGGTTCCA
* * * * *
29878 GTAAATAGATTTATTTTTTGAATCTC--A--TACTAATTTTTGAAATATTAATATATTAGTATTA
1 -TAAACAAATTTATTTTTTAAATCTCTTAGTTA-TAATTTTTAAAATATTATTA-ATTAGTATTA
*
29939 TTTTTATT-TCAAATAAACTTGTAT
63 -TTTTATTAT-GAATAAACTTGTAT
29963 CTTCAAAAAT
Statistics
Matches: 367, Mismatches: 61, Indels: 37
0.79 0.13 0.08
Matches are distributed among these distances:
177 114 0.31
178 26 0.07
179 5 0.01
180 58 0.16
181 76 0.21
182 2 0.01
183 5 0.01
184 81 0.22
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (180 bp):
TAAACAAATTTATTTTTTAAATCTCTTAGTTATAATTTTTAAAATATTATTAATTAGTATTATTT
TATTATGAATAAACTTGTATGAATAGAAATAATTATTTTATGACAAAACAAAAGGTTATAACAAT
TTAAAATAATATAATTATTCAAATAGGTATAATAATTTGAACTGGTTCCA
Found at i:30705 original size:180 final size:179
Alignment explanation
Indices: 30111--31673 Score: 1210
Period size: 181 Copynumber: 8.7 Consensus size: 179
30101 TTAGGAAACT
*
30111 GATTTATTTTTTAAA--TC-T-CTTATTAATTTTTAAAATATTAATAAACTAGTATTA-TTTTAT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTA-
* * * * * * *
30171 TTTGGATAAACTTTTGTGAACTA-AAACAATT-TTTTATGATAAAACAAAAGTTCAT-ATCGATT
65 TCTGAATAAGCTTGTATGAAC-AGAAACAATTGTTTTATGACAAAA-AAAAGATCATAAT-GATT
* * * * * * *
30233 TTAAATAGATAATTATTTAAATAGTTATAGCTATTTGAACTTGTTCAGTAAATA
127 TGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TTGTTTAGAAAATA
* * * *
30287 GATTTATTTTTCAAATCTCTTGCTTATTAATTTTTTGAAA-GTTAATAAATTAGTATTATTTTCT
1 GATTTATTTTTTAAATCTCTTACTTATTAA-TTTTTAAAATATTAATAAATTAGTATTATTTT-T
* * * * * *
30351 TTC-GAATAAGCTTGTTTGAACTA-AAACAATTATTTTATGACTAAACAAAAGCTCAAAATGATT
64 ATCTGAATAAGCTTGTATGAAC-AGAAACAATTGTTTTATGAC-AAAAAAAAGATCATAATGATT
* * * * * *
30414 TGAAATAGATAATTATTCTAATAATCTTAACTATTTGAATTGATTCA-ACAAACA
127 TGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTG-TTTAGA-AAATA
* * * *
30468 CATTTATTTTTTAAA----TTATTTATTAATTTTGAAAATATTATTAAATTAGTATTATTTTTAT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTAT
* *
30529 CTGAATTAA-CTTGTATGATCAGAAACAATTGTTTTATGACAAAATAAAGATCATAATGATTTGA
66 CTGAA-TAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAAAAAAGATCATAATGATTTGA
* * * * * *
30593 GATTGATATTTGTCCAAATAGTCGTAACTATTAGAATTGCTTTAGAAAATA
130 AATAGATAATTGTTCAAATAGTCATAACTATTTGAATTG-TTTAGAAAATA
* * * *
30644 GCTTTAGTTTTTAAATCTCTTACTTAATAATTTTTAAAATATTAATAAAGTAGTATTA-TTTTAT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTAT
* * * * ** * * **
30708 TTCAAATACG-TT-TATTAATTGAAACAATTGTTTTATGACAAGACAAAAAG-TTAAAACAATTT
66 CT-GAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAA-A-AAAAAGATCATAATGATTT
* * * ** * *
30770 TAAATAGATAATTGTTCAAATGGTCATATCTAATTAAAATTGTTTAGTAAACA
128 GAAATAGATAATTGTTCAAATAGTCATAACT-ATTTGAATTGTTTAGAAAATA
* * * * *
30823 AATTTATTTTTTTAAATCTCTTGCTTATTAATTTTTAGAATGTTAATACATTAGTATTATTTTGT
1 GATTTA-TTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTT-T
* * * * * *
30888 -TCTGAATAAGTTTGTATGAACTA-AAATAATAGTTTTATGACTAAAAAAAAGGTTACAATGATT
64 ATCTGAATAAGCTTGTATGAAC-AGAAACAATTGTTTTATGAC-AAAAAAAAGATCATAATGATT
* * * *
30951 TGAAATAGATAATTGTTCAAATAGTCTTAATCTATTT-ATACTAG-TTCGATAAACA
127 TGAAATAGATAATTGTTCAAATAGTCATAA-CTATTTGA-A-TTGTTTAGA-AAATA
* * * * *
31006 TATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTATTAAATTAGTATCATTTTAAT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTAT
* * * * * * * *
31071 C-GAATAAGCTTATGTGAAAAGAAACAATTGTTGTATGACAAAATAAAGATCATTACGATTTGAG
66 CTGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAAAAAAGATCATAATGATTTGAA
* * *
31135 ATAGATAATTGTTCAAATAGTTATAACT-TTTGAACTGGTTTAGTAAATA
131 ATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TTGTTTAGAAAATA
* * *
31184 GATTTAGTTTTTAAA--TCTT--TTATTAATTTTCAAAATATTAATAAATTTGTATTACTTTATT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTA-TTT-TT
** ** * *
31245 -TC-GAATAATTTTGTATGAACAGAAACAATTGTTTTACCACAAAACAAAAGGTCATAATAATTT
64 ATCTGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAA-AAAAGATCATAATGATTT
* * * *
31308 AAAATAGCTAATTGTTCAAATGGAT-ATAACTATTTGAACTTATTT-GACAAATA
128 GAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAA-TTGTTTAGA-AAATA
* * * * ** *
31361 GATATATTTTTTAAATCTCCTACCTATTAACTTGCAAAATATTAATAAAGTAGTATTA-TTTTAT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTA-
* * * *
31425 TCTGAATAAACTTGTATGAATAGAAACAATTGTTTTATGATAAAACAAAAGATCCTAACT-ATTT
65 TCTGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAA-AAAAGATCATAA-TGATTT
* * * * * * ** * * *
31489 GAAATAAAAAATTGCTCAAACAGTCATAACAATTTGAGCTTACTCAGTAAACA
128 GAAATAGATAATTGTTCAAATAGTCATAACTATTTGA-ATTGTTTAGAAAATA
* * * * *
31542 GATTCATTTTATAAATCTTTTACTTATTAATTTTTGAAATATTAATAAACTAGTATTA-TTTTAT
1 GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTAT
* * * ** * *
31606 TTCAAATAAGCTTGTATGGAC--AAACAATTCATTTATCACAAAACAAAAGGTCATAACT-ATTT
66 CT-GAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAA-AAAAGATCATAA-TGATTT
31668 GAAATA
128 GAAATA
31674 AATAGAAAAT
Statistics
Matches: 1111, Mismatches: 216, Indels: 117
0.77 0.15 0.08
Matches are distributed among these distances:
174 30 0.03
175 39 0.04
176 138 0.12
177 89 0.08
178 56 0.05
179 109 0.10
180 199 0.18
181 310 0.28
182 125 0.11
183 16 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.42
Consensus pattern (179 bp):
GATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTAGTATTATTTTTAT
CTGAATAAGCTTGTATGAACAGAAACAATTGTTTTATGACAAAAAAAAGATCATAATGATTTGAA
ATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGTTTAGAAAATA
Found at i:31491 original size:537 final size:534
Alignment explanation
Indices: 30094--31623 Score: 1564
Period size: 537 Copynumber: 2.8 Consensus size: 534
30084 TAATTATTTA
* * *
30094 AACTGATTTAGGAAACT-GATTTATTTTTTAAATCTCTTATTAATTTTTAAAATATTAATAAACT
1 AACTGATTTA-GAAAATAGATTTAGTTTTTAAATCTTTTATTAATTTTTAAAATATTAATAAACT
* * *
30158 AGTATTATTTTATTTTGGATAAACTTTTG--TGAACTA-AAACAATT-TTTTATGATAAAACAAA
65 AGTATTATTTTATTTCGAAT-AA-TTTTGTATGAAC-AGAAACAATTGTTTTATGACAAAACAAA
* * * * * * *
30219 AGTTCAT-ATCGATTTTAAATAGATAATTATTTAAATAGTTATAGCTATTTGAACTTGTTCAGTA
127 AGGTCATAAT-AATTTTAAATAGATAATTGTTCAAAT-GGTATAACTATTTGAACTT-TTTAGTA
* *
30283 AATAGATTTATTTTTCAAATCTCTTGCTTATTAATTTTTTGAAA-GTTAATAAATTAGTATTATT
189 AATAGATTTATTTTTTAAATCTCTTGCTTATTAA-TTTTTAAAATGTTAATAAATTAGTATTATT
* * * * *
30347 TTCTT-TCGAATAAGCTTGTTTGAACTAAAACAATTATTTTATGACT-AAACAAAAGCTCAAAAT
253 TTATTCT-GAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACTAAAACAAAAGATCTAAAT
* * * * *
30410 GATTTGAAATAGATAATTATTCTAATAATCTTAACTATTTGAA-TTGATTCAACAAACACATTTA
317 GATTTGAAATAGATAATTGTTCAAATAGTCTTAACTATTTGAACTAG-TTC-ATAAACACATTTA
* * * *
30474 TTTTTTAAA---TTATTTATTAATTTTGAAAATATTATTAAATTAGTATTATTTTTATCTGAATT
380 TTTTTTAAATCTTTACTTATTAATTTTTAGAATATTATTAAATTAGTATTATTTTAATC-GAA-T
* ** * * *
30536 AA-CTTGTATGATCAGAAACAATTGTTTTATGACAAAATAAAGATCATAATGATTTGAGATTGAT
443 AAGCTTATATGAAAAGAAACAATTGTTGTATGACAAAATAAAGATCATAACGATTTGAGATAGAT
* *
30600 ATTTGTCCAAATAGTCGTAACTATTAG
508 AATTGTCCAAATAGTCATAACTATTAG
* * * *
30627 AATTGCTTTAGAAAATAGCTTTAGTTTTTAAATCTCTTACTTAATAATTTTTAAAATATTAATAA
1 AACTGATTTAGAAAATAGATTTAGTTTTTAAA--TCTT--TTATTAATTTTTAAAATATTAATAA
* * ** * ** *
30692 AGTAGTATTATTTTATTTCAAAT-ACGTT-TATTAATTGAAACAATTGTTTTATGACAAGACAAA
62 ACTAGTATTATTTTATTTCGAATAATTTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAA
* * * * * * * *
30755 AAGTTAAAACAATTTTAAATAGATAATTGTTCAAATGGTCATATCTAATTAAAATTGTTTAGTAA
127 AGGTCATAATAATTTTAAATAGATAATTGTTCAAATGGT-ATAACTATTTGAACTT-TTTAGTAA
* * * *
30820 ACAAATTTATTTTTTTAAATCTCTTGCTTATTAATTTTTAGAATGTTAATACATTAGTATTATTT
190 ATAGATTTA-TTTTTTAAATCTCTTGCTTATTAATTTTTAAAATGTTAATAAATTAGTATTATTT
* * * * *
30885 TGTTCTGAATAAGTTTGTATGAACTAAAATAATAGTTTTATGACTAAAA-AAAAGGT-TACAATG
254 TATTCTGAATAAGCTTGTATGAACTAAAACAATTGTTTTATGACTAAAACAAAAGATCTA-AATG
*
30948 ATTTGAAATAGATAATTGTTCAAATAGTCTTAATCTATTT-ATACTAGTTCGATAAACATATTTA
318 ATTTGAAATAGATAATTGTTCAAATAGTCTTAA-CTATTTGA-ACTAGTTC-ATAAACACATTTA
*
31012 TTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTATTAAATTAGTATCATTTTAATCGAATA
380 TTTTTTAAATCT-TTACTTATTAATTTTTAGAATATTATTAAATTAGTATTATTTTAATCGAATA
* *
31077 AGCTTATGTGAAAAGAAACAATTGTTGTATGACAAAATAAAGATCATTACGATTTGAGATAGATA
444 AGCTTATATGAAAAGAAACAATTGTTGTATGACAAAATAAAGATCATAACGATTTGAGATAGATA
* * *
31142 ATTGTTCAAATAGTTATAACT-TTTG
509 ATTGTCCAAATAGTCATAACTATTAG
* * * * *
31167 AACTGGTTTAGTAAATAGATTTAGTTTTTAAATCTTTTATTAATTTTCAAAATATTAATAAATTT
1 AACTGATTTAGAAAATAGATTTAGTTTTTAAATCTTTTATTAATTTTTAAAATATTAATAAACTA
* **
31232 GTATTACTTTATTTCGAATAATTTTGTATGAACAGAAACAATTGTTTTACCACAAAACAAAAGGT
66 GTATTATTTTATTTCGAATAATTTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGT
* * *
31297 CATAATAATTTAAAATAGCTAATTGTTCAAATGGATATAACTATTTGAACTTATTT-GACAAATA
131 CATAATAATTTTAAATAGATAATTGTTCAAATGG-TATAACTATTTGAACTT-TTTAG-TAAATA
* * * * * ** * *
31361 GATATATTTTTTAAATCTCCTACCTATTAACTTGCAAAATATTAATAAAGTAGTATTATTTTATT
193 GATTTATTTTTTAAATCTCTTGCTTATTAATTTTTAAAATGTTAATAAATTAGTATTATTTTATT
* *
31426 CTGAATAAACTTGTATGAA-TAGAAACAATTGTTTTATGA-TAAAACAAAAGATCCTAACT-ATT
258 CTGAATAAGCTTGTATGAACTA-AAACAATTGTTTTATGACTAAAACAAAAGAT-CTAAATGATT
* * * * * * * * * *
31488 TGAAATAAAAAATTGCTCAAACAGTCATAACAATTTGAGCTTA-CTCAGTAAACAGATTCATTTT
321 TGAAATAGATAATTGTTCAAATAGTCTTAACTATTTGAAC-TAGTTCA-TAAACACATTTATTTT
* * * * *
31552 ATAAATCTTTTACTTATTAATTTTT-GAAATATTAATAAACTAGTATTATTTTATTTCAAATAAG
384 TTAAATC-TTTACTTATTAATTTTTAG-AATATTATTAAATTAGTATTATTTTA-ATCGAATAAG
*
31616 CTTGTATG
446 CTTATATG
31624 GACAAACAAT
Statistics
Matches: 820, Mismatches: 139, Indels: 72
0.80 0.13 0.07
Matches are distributed among these distances:
532 5 0.01
533 21 0.03
534 2 0.00
535 19 0.02
536 192 0.23
537 301 0.37
538 124 0.15
539 5 0.01
540 34 0.04
541 75 0.09
542 42 0.05
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (534 bp):
AACTGATTTAGAAAATAGATTTAGTTTTTAAATCTTTTATTAATTTTTAAAATATTAATAAACTA
GTATTATTTTATTTCGAATAATTTTGTATGAACAGAAACAATTGTTTTATGACAAAACAAAAGGT
CATAATAATTTTAAATAGATAATTGTTCAAATGGTATAACTATTTGAACTTTTTAGTAAATAGAT
TTATTTTTTAAATCTCTTGCTTATTAATTTTTAAAATGTTAATAAATTAGTATTATTTTATTCTG
AATAAGCTTGTATGAACTAAAACAATTGTTTTATGACTAAAACAAAAGATCTAAATGATTTGAAA
TAGATAATTGTTCAAATAGTCTTAACTATTTGAACTAGTTCATAAACACATTTATTTTTTAAATC
TTTACTTATTAATTTTTAGAATATTATTAAATTAGTATTATTTTAATCGAATAAGCTTATATGAA
AAGAAACAATTGTTGTATGACAAAATAAAGATCATAACGATTTGAGATAGATAATTGTCCAAATA
GTCATAACTATTAG
Found at i:33144 original size:19 final size:19
Alignment explanation
Indices: 33120--33163 Score: 88
Period size: 19 Copynumber: 2.3 Consensus size: 19
33110 TGAAGCTGAA
33120 TTCACCAAGTGTTGGATTG
1 TTCACCAAGTGTTGGATTG
33139 TTCACCAAGTGTTGGATTG
1 TTCACCAAGTGTTGGATTG
33158 TTCACC
1 TTCACC
33164 CATTAATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.36
Consensus pattern (19 bp):
TTCACCAAGTGTTGGATTG
Found at i:37487 original size:105 final size:101
Alignment explanation
Indices: 37279--37487 Score: 278
Period size: 105 Copynumber: 2.0 Consensus size: 101
37269 TTTTATGGCT
* * * * **
37279 TGTAAATTCATAAAATGCTAACCAACACCCGCACCTAGGCTTGGCTCAATTTTGCCAAACCTGAA
1 TGTAAATTCATAAAATGCTAACCAACACCCACACCTAGGCCTAGCTCAATTCTGCCAAACCCAAA
*
37344 CATCGGGCCTAATCCTCTAGAGTCTTGATCACTACC
66 CATCAGGCCTAATCCTCTAGAGTCTTGATCACTACC
*
37380 TGTAAATTCATAAAATGCTAACCAACACACACACACCCCTTAGGCCTAGCTCAATTCTGTCAAAC
1 TGTAAATTCATAAAATGCTAACCAACAC-C-CACA--CC-TAGGCCTAGCTCAATTCTGCCAAAC
37445 CCAAACA-CTAGGCCT-ATCCTCTAGAGTCTTGATCACTACC
61 CCAAACATC-AGGCCTAATCCTCTAGAGTCTTGATCACTACC
37485 TGT
1 TGT
37488 TCCATTGTTT
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
101 28 0.30
102 1 0.01
103 3 0.03
105 31 0.33
106 31 0.33
ACGTcount: A:0.31, C:0.31, G:0.13, T:0.25
Consensus pattern (101 bp):
TGTAAATTCATAAAATGCTAACCAACACCCACACCTAGGCCTAGCTCAATTCTGCCAAACCCAAA
CATCAGGCCTAATCCTCTAGAGTCTTGATCACTACC
Found at i:50581 original size:59 final size:57
Alignment explanation
Indices: 50439--50584 Score: 199
Period size: 55 Copynumber: 2.6 Consensus size: 57
50429 TGATAAATGG
* * * *
50439 AAAAACGAAAAAAAAATTGATAGGGCATAATGCCAATGTGTTCCACCAAGAAAAAAG
1 AAAAACGAAAAAAAAATTGATGGGGCAAAATGCCAATGTGCTCCACCAAGAAAAAAA
*
50496 AAAAA--AAAAAAAAATTGATGGGGCAAAATGCCAATGTGCTCTACCAA-AAAAAAA
1 AAAAACGAAAAAAAAATTGATGGGGCAAAATGCCAATGTGCTCCACCAAGAAAAAAA
50550 AAAGAAGCGAAAAAGAAAATTGATGGGGCAAAATG
1 AAA-AA-CGAAAAA-AAAATTGATGGGGCAAAATG
50585 TCAAAGTACC
Statistics
Matches: 79, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
54 9 0.11
55 40 0.51
57 5 0.06
58 5 0.06
59 20 0.25
ACGTcount: A:0.55, C:0.12, G:0.19, T:0.14
Consensus pattern (57 bp):
AAAAACGAAAAAAAAATTGATGGGGCAAAATGCCAATGTGCTCCACCAAGAAAAAAA
Found at i:52063 original size:68 final size:68
Alignment explanation
Indices: 51875--52167 Score: 268
Period size: 68 Copynumber: 4.2 Consensus size: 68
51865 GAAACCCTTA
* * * * *
51875 CGAATCTTGCATCTTTACGAATCTAGAACTTTTGTGAAACTTGAAATCTTACAAATCTTTCTTGT
1 CGAATCTGGAATCTTTATGAATCTAGAACCTTTGTGAAACTTGAAATCTTGCAAATCTTTCTT-T
51940 GAACTTG
65 ---CTTG
** * * * * * ** * *
51947 AAAATCTTTGCAAAC-CT-TGTATCTTTGAACCTTTGCAAAACTTAAAATCTTGCAAATCTTTTT
1 CGAATC--TGGAATCTTTATGAATC-TAGAACCTTTGTGAAACTTGAAATCTTGCAAATCTTTCT
52010 TTCTTG
63 TTCTTG
* * ***
52016 CGAATTTGGAATCTTTATGAATTTAGAACCTTTGTGAAACTTGAAATCTTATGAATCTTTCTTTC
1 CGAATCTGGAATCTTTATGAATCTAGAACCTTTGTGAAACTTGAAATCTTGCAAATCTTTCTTTC
*
52081 TTA
66 TTG
*
52084 CGAATCTGGAATCTTTGTGAATCTAGAACCTTTGTGAAACTTG-AATCTTGCAAATCTTTCTTTC
1 CGAATCTGGAATCTTTATGAATCTAGAACCTTTGTGAAACTTGAAATCTTGCAAATCTTTCTTTC
52148 TTG
66 TTG
* *
52151 TGAATCTGAAAATCTTT
1 CGAATCTG-GAATCTTT
52168 GACAAAACTT
Statistics
Matches: 173, Mismatches: 42, Indels: 16
0.75 0.18 0.07
Matches are distributed among these distances:
67 32 0.18
68 84 0.49
69 11 0.06
72 9 0.05
73 34 0.20
74 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (68 bp):
CGAATCTGGAATCTTTATGAATCTAGAACCTTTGTGAAACTTGAAATCTTGCAAATCTTTCTTTC
TTG
Found at i:52105 original size:17 final size:17
Alignment explanation
Indices: 52085--52132 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
52075 TCTTTCTTAC
*
52085 GAATCTGGAATCTTTGT
1 GAATCTAGAATCTTTGT
*
52102 GAATCTAGAACCTTTGT
1 GAATCTAGAATCTTTGT
* *
52119 GAAACTTGAATCTT
1 GAATCTAGAATCTT
52133 GCAAATCTTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.38
Consensus pattern (17 bp):
GAATCTAGAATCTTTGT
Found at i:52130 original size:34 final size:34
Alignment explanation
Indices: 52024--52132 Score: 91
Period size: 34 Copynumber: 3.2 Consensus size: 34
52014 TGCGAATTTG
*
52024 GAATCTTTATGAATTTAGAACCTTTGTGAAACTT
1 GAATCTTTATGAATCTAGAACCTTTGTGAAACTT
** * * *
52058 GAAATC-TTATGAATCT---TTCTTTCTTACGAATCTG
1 G-AATCTTTATGAATCTAGAACCTTT-GT--GAAACTT
*
52092 GAATCTTTGTGAATCTAGAACCTTTGTGAAACTT
1 GAATCTTTATGAATCTAGAACCTTTGTGAAACTT
52126 GAATCTT
1 GAATCTT
52133 GCAAATCTTT
Statistics
Matches: 55, Mismatches: 12, Indels: 16
0.66 0.14 0.19
Matches are distributed among these distances:
31 4 0.07
32 1 0.02
33 4 0.07
34 37 0.67
35 4 0.07
36 1 0.02
37 4 0.07
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (34 bp):
GAATCTTTATGAATCTAGAACCTTTGTGAAACTT
Found at i:52193 original size:53 final size:52
Alignment explanation
Indices: 52120--52221 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 52
52110 AACCTTTGTG
* **
52120 AAACTTGAATCTTGCAAATCTTTCTTTCTTGTGAATCTGAAAAT-CTTTGACA
1 AAACTTGAATCTTGCAAATCTTTCATTCTTGCAAATCT-AAAATCCTTTGACA
**
52172 AAACTTGAAATCTTGTGAATCTTTCATTCTTGCAAATCTAAAATCCTTTG
1 AAACTTG-AATCTTGCAAATCTTTCATTCTTGCAAATCTAAAATCCTTTG
52222 CAGATCCTAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
52 12 0.28
53 31 0.72
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (52 bp):
AAACTTGAATCTTGCAAATCTTTCATTCTTGCAAATCTAAAATCCTTTGACA
Found at i:52554 original size:119 final size:119
Alignment explanation
Indices: 52338--52865 Score: 387
Period size: 119 Copynumber: 4.5 Consensus size: 119
52328 TGACCTATGG
* * * * **
52338 TTTCATCCCGATAATTTATTTTTGCCCTCAACTTGCTCTTGGTCACTTCATTTTGACTTGTAGTT
1 TTTCATCCTGATAATTTATTTTTGACCTCGACTTGATCTTGGTCACTTCATTTTGACTCATAGTT
* *
52403 TAATCCCAATCACTTGATCTTTGCTTAATCCAGATCATTTCTTATGACTAATGA
66 TAATCCCAATCACTTGATCTTAGCTCAATCCAGATCATTTCTTATGACTAATGA
* * * *
52457 TTTCATCCTGATTATTTATTTTTGACCTCGCCTTGGTCTTGGTCACTTCATTTTGACTCATGGTT
1 TTTCATCCTGATAATTTATTTTTGACCTCGACTTGATCTTGGTCACTTCATTTTGACTCATAGTT
* * * **
52522 TAGTCCCGATCACTTGATCTTAGCTCAGTCCAGATCATTTCTTATGACTCGTGA
66 TAATCCCAATCACTTGATCTTAGCTCAATCCAGATCATTTCTTATGACTAATGA
* * * * * * ** *
52576 TTTCATCCTGATCATTTATTTTTTTACCTAGACTCGATCTTGATCACTTCTTTTTGACTTGTGGT
1 TTTCATCCTGATAATTTA-TTTTTGACCTCGACTTGATCTTGGTCACTTCATTTTGACTCATAGT
* * * * * * * * *
52641 TTCATCCTATTCA-TCTGATCTTGGCTTAGTCTAGATCATTT-TATAAT-TCTCA-G-
65 TTAATCCCAATCACT-TGATCTTAGCTCAATCCAGATCATTTCT-T-ATGACTAATGA
* * * * *
52694 TTTCAT-CTCAATCATTTA-TTTTGACCTTGACTTGATCTCGATCACTTCATTTTTTTGACTCAT
1 TTTCATCCT-GATAATTTATTTTTGACCTCGACTTGATCTTGGTCACTTCA---TTTTGACTCAT
* * * * ** * **
52757 -GATTTTATCCCAGTCACTTGATCTTGGCTCAGTATAGATCA-TT-TTATGATTCGTGA
62 AG-TTTAATCCCAATCACTTGATCTTAGCTCAATCCAGATCATTTCTTATGACTAATGA
* * * * * *
52813 TTTCATCCCCG-TCATTTA-TTTTGACCTCGACTCGATCCTAGTCATTTCATTTT
1 TTTCAT-CCTGATAATTTATTTTTGACCTCGACTTGATCTTGGTCACTTCATTTT
52866 TTGACTCGTG
Statistics
Matches: 333, Mismatches: 61, Indels: 33
0.78 0.14 0.08
Matches are distributed among these distances:
116 32 0.10
117 5 0.02
118 19 0.06
119 201 0.60
120 73 0.22
121 3 0.01
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (119 bp):
TTTCATCCTGATAATTTATTTTTGACCTCGACTTGATCTTGGTCACTTCATTTTGACTCATAGTT
TAATCCCAATCACTTGATCTTAGCTCAATCCAGATCATTTCTTATGACTAATGA
Found at i:52866 original size:119 final size:118
Alignment explanation
Indices: 52400--52929 Score: 420
Period size: 119 Copynumber: 4.5 Consensus size: 118
52390 TTGACTTGTA
* * * * * * * **
52400 GTTTAATCCCAATCACTTGATCTTTGCTTAATCCAGATCATTTCTTATGACTAATGATTTCAT-C
1 GTTTCATCCCGATCACTTGATCTTGGCTCAGTCTAGATCA-TT-TTATGATTCGTGATTTCATCC
* * * * * * * *
52464 CTGATTATTTATTTTTGACCTCGCCTTGGTCTTGGTCACTTCA--TTTTGACTCATG
64 CAG-TCATTTA-TTTTGACCTAGACTCGATCTAGATCACTTCATTTTTTGACTCATG
* * *
52519 GTTT-AGTCCCGATCACTTGATCTTAGCTCAGTCCAGATCATTTCTTATGACTCGTGATTTCAT-
1 GTTTCA-TCCCGATCACTTGATCTTGGCTCAGTCTAGATCA-TT-TTATGATTCGTGATTTCATC
* * * **
52582 CCTGATCATTTATTTTTTTACCTAGACTCGATCTTGATCACTTC--TTTTTGACTTGTG
63 CCAG-TCATTTA--TTTTGACCTAGACTCGATCTAGATCACTTCATTTTTTGACTCATG
* * * *
52639 GTTTCAT-CCTATTCA-TCTGATCTTGGCTTAGTCTAGATCATTTTATAATTC-TCAGTTTCATC
1 GTTTCATCCCGA-TCACT-TGATCTTGGCTCAGTCTAGATCATTTTATGATTCGTGA-TTTCATC
* * * * *
52701 TCAATCATTTATTTTGACCTTGACTTGATCTCGATCACTTCATTTTTTTGACTCATG
63 CCAGTCATTTATTTTGACCTAGACTCGATCTAGATCACTTCA-TTTTTTGACTCATG
* * *
52758 ATTTTATCCC-AGTCACTTGATCTTGGCTCAGTATAGATCATTTTATGATTCGTGATTTCATCCC
1 GTTTCATCCCGA-TCACTTGATCTTGGCTCAGTCTAGATCATTTTATGATTCGTGATTTCATCCC
* * * *
52822 CGTCATTTATTTTGACCTCGACTCGATCCTAG-TCATTTCATTTTTTGACTCGTG
65 AGTCATTTATTTTGACCTAGACTCGAT-CTAGATCACTTCATTTTTTGACTCATG
* * *
52876 GTTTCATCTCGATTACTTGATCTTGAC-CTAGTCTAGATCATTTTATGATTCGTG
1 GTTTCATCCCGATCACTTGATCTTGGCTC-AGTCTAGATCATTTTATGATTCGTG
52930 GTTTTGTCCT
Statistics
Matches: 342, Mismatches: 52, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
116 26 0.08
117 3 0.01
118 78 0.23
119 163 0.48
120 71 0.21
121 1 0.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (118 bp):
GTTTCATCCCGATCACTTGATCTTGGCTCAGTCTAGATCATTTTATGATTCGTGATTTCATCCCA
GTCATTTATTTTGACCTAGACTCGATCTAGATCACTTCATTTTTTGACTCATG
Found at i:53355 original size:52 final size:52
Alignment explanation
Indices: 53278--53422 Score: 161
Period size: 50 Copynumber: 2.8 Consensus size: 52
53268 AACCGTAATT
* ** * *
53278 GAGAGATTTTT-AGATTTAATTCCATAATCAATTGGCATTAAAAATGATATG
1 GAGAGATTTTTGGGATTTAATTCCATAATCAATTCACATTAAAAATGAAAGG
*
53329 GAGAGATTTTTGGGATTTAATTCCATAATCAATTCACATT-AAATTGAAAGG
1 GAGAGATTTTTGGGATTTAATTCCATAATCAATTCACATTAAAAATGAAAGG
* * * * **
53380 GAAAGA-TTTTGGGATTTGATTTCAGAATCAATTTTCATTAAAA
1 GAGAGATTTTTGGGATTTAATTCCATAATCAATTCACATTAAAA
53423 CAAAAATCAA
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
50 28 0.35
51 27 0.34
52 25 0.31
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (52 bp):
GAGAGATTTTTGGGATTTAATTCCATAATCAATTCACATTAAAAATGAAAGG
Found at i:53991 original size:18 final size:18
Alignment explanation
Indices: 53964--54005 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
53954 GATCGCAGGT
*
53964 TTTTTCTTTTTCATTTTA
1 TTTTTATTTTTCATTTTA
*
53982 TTTTTATTTTTTATTTTA
1 TTTTTATTTTTCATTTTA
54000 TTTTTA
1 TTTTTA
54006 ACCCATTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTATTTTTCATTTTA
Found at i:54162 original size:25 final size:23
Alignment explanation
Indices: 54109--54162 Score: 54
Period size: 24 Copynumber: 2.3 Consensus size: 23
54099 TCTGAAATTT
* *
54109 AAAAAAAATAAATATTTTTATAA
1 AAAAAAAAAAAATATTTTTAGAA
* *
54132 AGAAAAAAAAAACATCTTTTTAGAT
1 A-AAAAAAAAAA-ATATTTTTAGAA
54157 AAAAAA
1 AAAAAA
54163 CTATCTTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 14 0.56
25 10 0.40
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (23 bp):
AAAAAAAAAAAATATTTTTAGAA
Found at i:56821 original size:21 final size:20
Alignment explanation
Indices: 56797--56842 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
56787 TTTGCCTTTG
*
56797 ATTTTATTTGATTTTGTTTAA
1 ATTTTATTTGAATTTG-TTAA
*
56818 ATTTTGTTTGAATTTGTTAA
1 ATTTTATTTGAATTTGTTAA
56838 ATTTT
1 ATTTT
56843 GGTTGAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.65
Consensus pattern (20 bp):
ATTTTATTTGAATTTGTTAA
Found at i:56839 original size:20 final size:21
Alignment explanation
Indices: 56797--56850 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
56787 TTTGCCTTTG
* *
56797 ATTTTATTTGATTTTGTTTAA
1 ATTTTGTTTGAATTTGTTTAA
56818 ATTTTGTTTGAATTTG-TTAA
1 ATTTTGTTTGAATTTGTTTAA
*
56838 ATTTTGGTTGAAT
1 ATTTTGTTTGAAT
56851 ATAATTAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.24, C:0.00, G:0.15, T:0.61
Consensus pattern (21 bp):
ATTTTGTTTGAATTTGTTTAA
Found at i:56843 original size:10 final size:11
Alignment explanation
Indices: 56807--56843 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
56797 ATTTTATTTG
56807 ATTTTGTTTAA
1 ATTTTGTTTAA
*
56818 ATTTTGTTTGA
1 ATTTTGTTTAA
56829 A-TTTG-TTAA
1 ATTTTGTTTAA
56838 ATTTTG
1 ATTTTG
56844 GTTGAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.17
10 8 0.35
11 11 0.48
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (11 bp):
ATTTTGTTTAA
Found at i:56941 original size:123 final size:124
Alignment explanation
Indices: 56797--57047 Score: 450
Period size: 123 Copynumber: 2.0 Consensus size: 124
56787 TTTGCCTTTG
56797 ATTTTATTTGATTTTGTTTAAATTTTGTTTGAATTTGTTAAATTTTGGTTGAATATAATTAGTGA
1 ATTTTATTTGATTTTGTTTAAATTTTGTTTGAATTTGTTAAATTTTGGTTGAATATAATTAGTGA
*
56862 ATTTTTTGTTGTCAAATTCGTATTTTTG-AAATTTTTAAAATTCTTTAAAAGTTTTCAA
66 AATTTTTGTTGTCAAATTCGTATTTTTGAAAATTTTTAAAATTCTTTAAAAGTTTTCAA
*
56920 ATTTTATTTGATTTTGTTTAAATTTTGTTTGAATTTGTTAAATTTTGGTTGAATATAATTGGTGA
1 ATTTTATTTGATTTTGTTTAAATTTTGTTTGAATTTGTTAAATTTTGGTTGAATATAATTAGTGA
* * *
56985 AATTTTTGTTTTCAAATTTGTATTTTTGAAAATTTTTAAAATTTTTTAAAAGTTTTCAA
66 AATTTTTGTTGTCAAATTCGTATTTTTGAAAATTTTTAAAATTCTTTAAAAGTTTTCAA
57044 ATTT
1 ATTT
57048 GCATTTTTGA
Statistics
Matches: 122, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
123 89 0.73
124 33 0.27
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (124 bp):
ATTTTATTTGATTTTGTTTAAATTTTGTTTGAATTTGTTAAATTTTGGTTGAATATAATTAGTGA
AATTTTTGTTGTCAAATTCGTATTTTTGAAAATTTTTAAAATTCTTTAAAAGTTTTCAA
Found at i:56942 original size:21 final size:20
Alignment explanation
Indices: 56918--56965 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
56908 AAAAGTTTTC
*
56918 AAATTTTATTTGATTTTGTTT
1 AAATTTTATTTGAATTTG-TT
*
56939 AAATTTTGTTTGAATTTGTT
1 AAATTTTATTTGAATTTGTT
56959 AAATTTT
1 AAATTTT
56966 GGTTGAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.62
Consensus pattern (20 bp):
AAATTTTATTTGAATTTGTT
Found at i:56962 original size:20 final size:21
Alignment explanation
Indices: 56918--56973 Score: 78
Period size: 20 Copynumber: 2.7 Consensus size: 21
56908 AAAAGTTTTC
* *
56918 AAATTTTATTTGATTTTGTTT
1 AAATTTTGTTTGAATTTGTTT
56939 AAATTTTGTTTGAATTTG-TT
1 AAATTTTGTTTGAATTTGTTT
*
56959 AAATTTTGGTTGAAT
1 AAATTTTGTTTGAAT
56974 ATAATTGGTG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (21 bp):
AAATTTTGTTTGAATTTGTTT
Found at i:56966 original size:10 final size:11
Alignment explanation
Indices: 56930--56966 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
56920 ATTTTATTTG
56930 ATTTTGTTTAA
1 ATTTTGTTTAA
*
56941 ATTTTGTTTGA
1 ATTTTGTTTAA
56952 A-TTTG-TTAA
1 ATTTTGTTTAA
56961 ATTTTG
1 ATTTTG
56967 GTTGAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
9 4 0.17
10 8 0.35
11 11 0.48
ACGTcount: A:0.24, C:0.00, G:0.14, T:0.62
Consensus pattern (11 bp):
ATTTTGTTTAA
Found at i:57028 original size:19 final size:19
Alignment explanation
Indices: 57006--57047 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
56996 TCAAATTTGT
*
57006 ATTTTTGAAAATTTTTAAA
1 ATTTTTGAAAAGTTTTAAA
* *
57025 ATTTTTTAAAAGTTTTCAA
1 ATTTTTGAAAAGTTTTAAA
57044 ATTT
1 ATTT
57048 GCATTTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTTTTGAAAAGTTTTAAA
Found at i:57916 original size:110 final size:110
Alignment explanation
Indices: 57723--57928 Score: 306
Period size: 110 Copynumber: 1.9 Consensus size: 110
57713 ACATCTATTC
* * *
57723 TTTTTTATTATAATTTTATAATTATTCAATCGTATTAAAAATTAAAAAAATTTAAATTATAATTA
1 TTTTTTATTATAATATTATAATTATTCAATCATAATAAAAATTAAAAAAATTTAAATTATAATTA
*
57788 ATTATAAGTGTAAACATCACATAAAATTTTATAAAAATATATCTA
66 ATTATAAGTATAAACATCACATAAAATTTTATAAAAATATATCTA
* * * *
57833 TTTTTTATTATAATATTATAATTATTCAATCATAATAAAAATT-AAAATATTCTAAGTTGTGATT
1 TTTTTTATTATAATATTATAATTATTCAATCATAATAAAAATTAAAAAAATT-TAAATTATAATT
* *
57897 GATTATAAGTATAGACATCACATAAAATTTTA
65 AATTATAAGTATAAACATCACATAAAATTTTA
57929 GTGAATCCTA
Statistics
Matches: 85, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
109 7 0.08
110 78 0.92
ACGTcount: A:0.46, C:0.06, G:0.04, T:0.44
Consensus pattern (110 bp):
TTTTTTATTATAATATTATAATTATTCAATCATAATAAAAATTAAAAAAATTTAAATTATAATTA
ATTATAAGTATAAACATCACATAAAATTTTATAAAAATATATCTA
Found at i:59303 original size:16 final size:16
Alignment explanation
Indices: 59278--59308 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
59268 TCACCCACGA
59278 AATACCCAAAACCCAT
1 AATACCCAAAACCCAT
*
59294 AATACTCAAAACCCA
1 AATACCCAAAACCCA
59309 ATAGACAACC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.35, G:0.00, T:0.13
Consensus pattern (16 bp):
AATACCCAAAACCCAT
Found at i:59524 original size:29 final size:28
Alignment explanation
Indices: 59482--59542 Score: 95
Period size: 29 Copynumber: 2.1 Consensus size: 28
59472 GAAAGGTTTC
*
59482 AAGTGTAGGATTCTTGACTAAAATTTTGA
1 AAGTGCAGGATTCTTGACTAAAATTTT-A
*
59511 AAGTGCAGGATTCTTGACTAGAATTTTA
1 AAGTGCAGGATTCTTGACTAAAATTTTA
59539 AAGT
1 AAGT
59543 TGGAGAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 5 0.17
29 25 0.83
ACGTcount: A:0.34, C:0.08, G:0.21, T:0.36
Consensus pattern (28 bp):
AAGTGCAGGATTCTTGACTAAAATTTTA
Found at i:60090 original size:58 final size:59
Alignment explanation
Indices: 60023--60182 Score: 270
Period size: 59 Copynumber: 2.7 Consensus size: 59
60013 AAATTATTTA
*
60023 AGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAATTTTCAAAA-ATATTTTTTG
1 AGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAGATATTTTTTG
*
60081 AGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAGATATTTTTTG
1 AGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAGATATTTTTTG
*
60140 AGAAAAAGTTGAGAA-TATCAATTTTCCTTGAAAATAAATTTTT
1 AGAAAAAGTTGA-AAGTATCAATTTTCCTTGAAAATAAAATTTT
60183 TTTAAAAAAT
Statistics
Matches: 96, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
58 46 0.48
59 48 0.50
60 2 0.02
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (59 bp):
AGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTCAAAAGATATTTTTTG
Found at i:60161 original size:187 final size:188
Alignment explanation
Indices: 59828--60247 Score: 480
Period size: 187 Copynumber: 2.2 Consensus size: 188
59818 AAATATTTTC
* * *
59828 AAATTTTTTAA-AAAAAGTT-AAAGAATTAATTTTTCTTAAAAATAAAAATTTTCAAAAAAAAAT
1 AAATTTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTTCAAAAAAAAAT
** *
59891 TTGAGGAAAAATTGAAGTATCAATTTTCCTTCAATAACTTCAATAATAAAAAAGAAGTTTTAAGG
66 TTGAGGAAAAATTGAAGTATCAATTTTCCTTCAATAACTAAAATAATAAAAAAGAAGTTTTAAGA
*
59956 AAGAGTTGAAAGTATCAATTTTCCGTAGAAAAT-AATTTTTTTT-TGTATTTCTCAAGA
131 AAAAGTTGAAAGTATCAATTTTCC-TAGAAAATAAATTTTTTTTATGTATTTCTCAAGA
* ***
60013 AAATTATTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAAT-AAAATTTTCAAAAATATTT
1 AAATTTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTTCAAAAA-AAAA
* * * ** *
60077 TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAA-AA-TAAAAT-TTTCAAAAGATATTTTTT
65 TTTGAGGAAAAATTG-AAGTATCAATTTTCCTTCAATAACTAAAATAATAAAAAAGA-A-GTTTT
* *
60139 GAGAAAAAGTTGAGAA-TATCAATTTTCCTTGAAAATAAATTTTTTTTAAAAAATGTATTTCTCA
127 AAGAAAAAGTTGA-AAGTATCAATTTTCCTAGAAAATAAATTTTTTTT-----ATGTATTTCTCA
*
60203 ATA
186 AGA
* *
60206 AACTTTTTTAAGAAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 AAATTTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAA
60248 TAAATGCATT
Statistics
Matches: 198, Mismatches: 23, Indels: 20
0.82 0.10 0.08
Matches are distributed among these distances:
185 17 0.09
186 34 0.17
187 74 0.37
188 21 0.11
193 52 0.26
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (188 bp):
AAATTTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAAAATTTTCAAAAAAAAAT
TTGAGGAAAAATTGAAGTATCAATTTTCCTTCAATAACTAAAATAATAAAAAAGAAGTTTTAAGA
AAAAGTTGAAAGTATCAATTTTCCTAGAAAATAAATTTTTTTTATGTATTTCTCAAGA
Found at i:60180 original size:76 final size:75
Alignment explanation
Indices: 60100--60247 Score: 169
Period size: 76 Copynumber: 1.9 Consensus size: 75
60090 TGAAAGTATC
*
60100 AATTTTCCTTGAAAATAA-AATTT-TCAA-AAGATATTTTTTGAGAAAAAGTTGAGAA-TATCAA
1 AATTTT-CTTGAAAA-AAGAATTTCTCAATAA-A-ATTTTTTAAGAAAAAGTTGA-AAGTATCAA
60161 TTTTCCTTGAAAATA
61 TTTTCCTTGAAAATA
* * * *
60176 AATTTTTTTTAAAAAATGTATTTCTCAATAAACTTTTTTAAGAAAAAGTTGAAAGTATCAATTTT
1 AATTTTCTTGAAAAAA-GAATTTCTCAATAAAATTTTTTAAGAAAAAGTTGAAAGTATCAATTTT
60241 CCTTGAA
65 CCTTGAA
60248 TAAATGCATT
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
74 2 0.03
75 8 0.13
76 45 0.73
77 5 0.08
78 2 0.03
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (75 bp):
AATTTTCTTGAAAAAAGAATTTCTCAATAAAATTTTTTAAGAAAAAGTTGAAAGTATCAATTTTC
CTTGAAAATA
Found at i:75987 original size:19 final size:19
Alignment explanation
Indices: 75966--76001 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
75956 TTTAGATTTT
75966 TTTTTTGTTT-TGTTTTCA
1 TTTTTTGTTTGTGTTTTCA
75984 TTTTTTGTTTGTGTTTTC
1 TTTTTTGTTTGTGTTTTC
76002 TATTACACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.03, C:0.06, G:0.14, T:0.78
Consensus pattern (19 bp):
TTTTTTGTTTGTGTTTTCA
Found at i:76456 original size:7 final size:7
Alignment explanation
Indices: 76444--76496 Score: 65
Period size: 7 Copynumber: 7.7 Consensus size: 7
76434 TGCAATTTTC
*
76444 TTTTGTG
1 TTTTGTT
76451 TTTTG-T
1 TTTTGTT
76457 TTTTGATT
1 TTTTG-TT
76465 TTTTG-T
1 TTTTGTT
76471 TTTTGTT
1 TTTTGTT
76478 TTTTGTT
1 TTTTGTT
76485 TTTTGTT
1 TTTTGTT
*
76492 CTTTG
1 TTTTG
76497 GTTGCTTGAA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
6 11 0.27
7 24 0.59
8 6 0.15
ACGTcount: A:0.02, C:0.02, G:0.17, T:0.79
Consensus pattern (7 bp):
TTTTGTT
Found at i:76473 original size:6 final size:6
Alignment explanation
Indices: 76444--76487 Score: 52
Period size: 6 Copynumber: 6.7 Consensus size: 6
76434 TGCAATTTTC
76444 TTTTGT GTTTTGT TTTTGATT TTTTGT TTTTGTT TTTTGT TTTT
1 TTTTGT -TTTTGT TTTTG--T TTTTGT TTTTG-T TTTTGT TTTT
76488 TGTTCTTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
6 16 0.47
7 12 0.35
8 6 0.18
ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82
Consensus pattern (6 bp):
TTTTGT
Found at i:76496 original size:14 final size:13
Alignment explanation
Indices: 76444--76487 Score: 70
Period size: 13 Copynumber: 3.3 Consensus size: 13
76434 TGCAATTTTC
*
76444 TTTTGTGTTTTGT
1 TTTTGTTTTTTGT
76457 TTTTGATTTTTTGT
1 TTTTG-TTTTTTGT
76471 TTTTGTTTTTTGT
1 TTTTGTTTTTTGT
76484 TTTT
1 TTTT
76488 TGTTCTTTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.02, C:0.00, G:0.16, T:0.82
Consensus pattern (13 bp):
TTTTGTTTTTTGT
Found at i:76496 original size:27 final size:27
Alignment explanation
Indices: 76444--76496 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
76434 TGCAATTTTC
*
76444 TTTTGTGTTTTGTTTTTGATTTTTTGT
1 TTTTGTGTTTTGTTTTTGATTCTTTGT
*
76471 TTTTGTTTTTTGTTTTTTG-TTCTTTG
1 TTTTGTGTTTTG-TTTTTGATTCTTTG
76497 GTTGCTTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.02, C:0.02, G:0.17, T:0.79
Consensus pattern (27 bp):
TTTTGTGTTTTGTTTTTGATTCTTTGT
Found at i:77781 original size:16 final size:16
Alignment explanation
Indices: 77760--77790 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77750 ATTTATTTTT
*
77760 ATTTATTTTAACAAAA
1 ATTTATTCTAACAAAA
77776 ATTTATTCTAACAAA
1 ATTTATTCTAACAAA
77791 TATAAACATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTTATTCTAACAAAA
Found at i:78847 original size:17 final size:16
Alignment explanation
Indices: 78820--78861 Score: 68
Period size: 17 Copynumber: 2.6 Consensus size: 16
78810 ACCAGAAAAG
78820 AAAAG-AAAATGAAGA
1 AAAAGAAAAATGAAGA
78835 AAAATGAAAAATGAAGA
1 AAAA-GAAAAATGAAGA
78852 AAAAGAAAAA
1 AAAAGAAAAA
78862 AAACATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.16
16 7 0.28
17 14 0.56
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (16 bp):
AAAAGAAAAATGAAGA
Found at i:78959 original size:6 final size:6
Alignment explanation
Indices: 78948--78997 Score: 57
Period size: 6 Copynumber: 8.0 Consensus size: 6
78938 TTGTAAGTTT
*
78948 TTTTTA TTTTTA TTTTTA TTTTT- TTCAATTTA TTTTTA TTTTTA CTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TT---TTTA TTTTTA TTTTTA TTTTTA
78998 ATTAGATAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 2 0.05
6 32 0.82
8 3 0.08
9 2 0.05
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:81633 original size:46 final size:46
Alignment explanation
Indices: 81566--81658 Score: 150
Period size: 46 Copynumber: 2.0 Consensus size: 46
81556 TGCAGCAAAT
* *
81566 TTCTGTATAATTTAATCAAAACCAATAAACACTATTTGCAATGAAA
1 TTCTGTATAATTTAATCAAAACAAATAAACACAATTTGCAATGAAA
* *
81612 TTCTGTGTAATTTAATGAAAACAAATAAACACAATTTGCAATGAAA
1 TTCTGTATAATTTAATCAAAACAAATAAACACAATTTGCAATGAAA
81658 T
1 T
81659 GAAGCATGCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.32
Consensus pattern (46 bp):
TTCTGTATAATTTAATCAAAACAAATAAACACAATTTGCAATGAAA
Found at i:85905 original size:23 final size:22
Alignment explanation
Indices: 85854--85917 Score: 80
Period size: 21 Copynumber: 3.0 Consensus size: 22
85844 TACTGTTTTT
*
85854 TTCTTTTTTTTTAATTTAA-TC
1 TTCTTTTTTTGTAATTTAATTC
85875 -TCTTTTTTGTGTAATTTAATTC
1 TTCTTTTTT-TGTAATTTAATTC
85897 TTCTTTTTTTTGTAA-TTAATT
1 TTC-TTTTTTTGTAATTTAATT
85918 TTTATATTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
20 8 0.21
21 9 0.24
22 8 0.21
23 7 0.18
24 6 0.16
ACGTcount: A:0.19, C:0.08, G:0.05, T:0.69
Consensus pattern (22 bp):
TTCTTTTTTTGTAATTTAATTC
Found at i:85915 original size:22 final size:23
Alignment explanation
Indices: 85854--85917 Score: 91
Period size: 23 Copynumber: 3.0 Consensus size: 23
85844 TACTGTTTTT
85854 TTCTTTTTTTT-TAATTTAA-TC
1 TTCTTTTTTTTGTAATTTAATTC
*
85875 -TCTTTTTTGTGTAATTTAATTC
1 TTCTTTTTTTTGTAATTTAATTC
85897 TTCTTTTTTTTGTAA-TTAATT
1 TTCTTTTTTTTGTAATTTAATT
85918 TTTATATTAT
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
20 9 0.24
21 8 0.21
22 8 0.21
23 13 0.34
ACGTcount: A:0.19, C:0.08, G:0.05, T:0.69
Consensus pattern (23 bp):
TTCTTTTTTTTGTAATTTAATTC
Found at i:87315 original size:35 final size:35
Alignment explanation
Indices: 87275--87376 Score: 127
Period size: 33 Copynumber: 3.0 Consensus size: 35
87265 GTAAAAGTTA
* *
87275 TGTCAAATTTTTATTGATGATTGAAATATTTTTAG
1 TGTCAAATTTTTATTTATGATTGTAATATTTTTAG
* * **
87310 TGTCAAATTTTGATTTACGATTGTAAT-CGTTT-G
1 TGTCAAATTTTTATTTATGATTGTAATATTTTTAG
*
87343 TGTTAAATTTTTATTTATGATTGTAATATTTTTA
1 TGTCAAATTTTTATTTATGATTGTAATATTTTTA
87377 TTTGTACATG
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
33 25 0.46
34 6 0.11
35 23 0.43
ACGTcount: A:0.28, C:0.04, G:0.14, T:0.54
Consensus pattern (35 bp):
TGTCAAATTTTTATTTATGATTGTAATATTTTTAG
Found at i:87536 original size:2 final size:2
Alignment explanation
Indices: 87529--87560 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
87519 ATGTTTTGTA
87529 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
87561 GTATGTGAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99075 original size:2 final size:2
Alignment explanation
Indices: 99068--99099 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
99058 CTATTCTCGA
99068 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99100 TAGTTTTTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99281 original size:21 final size:21
Alignment explanation
Indices: 99257--99324 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
99247 AATAATTTTG
99257 ATTTTGATAATTTTTGATAAA
1 ATTTTGATAATTTTTGATAAA
* * *
99278 ATTTT-AGTAACTTTTGGTATA
1 ATTTTGA-TAATTTTTGATAAA
** *
99299 ATTTTGATAATCATTAATAAA
1 ATTTTGATAATTTTTGATAAA
99320 ATTTT
1 ATTTT
99325 AGTTACCTCT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
20 1 0.03
21 34 0.94
22 1 0.03
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (21 bp):
ATTTTGATAATTTTTGATAAA
Found at i:99709 original size:22 final size:21
Alignment explanation
Indices: 99684--99900 Score: 94
Period size: 22 Copynumber: 9.9 Consensus size: 21
99674 TTATTATTAT
*
99684 ATTATCATCAATTTACTACTAA
1 ATTATCAT-GATTTACTACTAA
* * * *
99706 ATTATTAGTGATATATTATTAA
1 ATTATCA-TGATTTACTACTAA
99728 ATTATCAATGATTTACTACTAA
1 ATTATC-ATGATTTACTACTAA
* *
99750 ATTAGCATTGATTTACTATTAA
1 ATTATCA-TGATTTACTACTAA
* * *
99772 CTTATGAATGATTTATTACTAA
1 ATTAT-CATGATTTACTACTAA
* * * * *
99794 GTTATGAATAATTTATTATTAA
1 ATTAT-CATGATTTACTACTAA
* * *
99816 ATTGTTAATGATTTATTACTAA
1 ATT-ATCATGATTTACTACTAA
* * *
99838 ATTACTGATGATTT-GTAATAAA
1 ATTA-TCATGATTTACTACT-AA
* * *
99860 ATTATAACTAATTTACTATTAA
1 ATTATCA-TGATTTACTACTAA
* *
99882 TTTATTAATGATTTACTAC
1 ATTA-TCATGATTTACTAC
99901 AAAGATATCA
Statistics
Matches: 151, Mismatches: 34, Indels: 20
0.74 0.17 0.10
Matches are distributed among these distances:
21 6 0.04
22 135 0.89
23 10 0.07
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (21 bp):
ATTATCATGATTTACTACTAA
Found at i:99767 original size:66 final size:66
Alignment explanation
Indices: 99694--99900 Score: 163
Period size: 66 Copynumber: 3.1 Consensus size: 66
99684 ATTATCATCA
* * * * *
99694 ATTTACTACTAAATTATTAGTGATATATTATTAAATTATCAATGATTTACTACTAAATTAG-CAT
1 ATTTACTACTAAATTATGAATGATATATTACTAAATTATCAATAATTTACTACTAAATT-GTCAA
99758 TG
65 TG
* * * * * * * *
99760 ATTTACTATTAACTTATGAATGATTTATTACTAAGTTATGAATAATTTATTATTAAATTGTTAAT
1 ATTTACTACTAAATTATGAATGATATATTACTAAATTATCAATAATTTACTACTAAATTGTCAAT
99825 G
66 G
* * * * *
99826 ATTTATTACTAAATTACTG-ATGAT-T-TGTAATAAAATTAT-AACTAATTTACTATTAATTTAT
1 ATTTACTACTAAATTA-TGAATGATATAT-TACT-AAATTATCAA-TAATTTACTACTAAATTGT
*
99887 TAATG
62 CAATG
99892 ATTTACTAC
1 ATTTACTAC
99901 AAAGATATCA
Statistics
Matches: 114, Mismatches: 22, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
64 1 0.01
65 7 0.06
66 104 0.91
67 2 0.02
ACGTcount: A:0.39, C:0.07, G:0.07, T:0.46
Consensus pattern (66 bp):
ATTTACTACTAAATTATGAATGATATATTACTAAATTATCAATAATTTACTACTAAATTGTCAAT
G
Found at i:99770 original size:44 final size:43
Alignment explanation
Indices: 99673--99841 Score: 160
Period size: 44 Copynumber: 3.9 Consensus size: 43
99663 TTATCATTAC
* * * *
99673 TTTATTATTATATTATC-ATCAATTTACTACTAAATTATTAGTGA
1 TTTATTATTAAATTATCAAT-GATTTACTACTAAATTA-GAATGA
* *
99717 TATATTATTAAATTATCAATGATTTACTACTAAATTAGCATTGA
1 TTTATTATTAAATTATCAATGATTTACTACTAAATTAG-AATGA
* * * * * *
99761 TTTACTATTAACTTATGAATGATTTATTACTAAGTTATGAATAA
1 TTTATTATTAAATTATCAATGATTTACTACTAAATTA-GAATGA
* * *
99805 TTTATTATTAAATTGTTAATGATTTATTACTAAATTA
1 TTTATTATTAAATTATCAATGATTTACTACTAAATTA
99842 CTGATGATTT
Statistics
Matches: 104, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
44 101 0.97
45 3 0.03
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.48
Consensus pattern (43 bp):
TTTATTATTAAATTATCAATGATTTACTACTAAATTAGAATGA
Found at i:99862 original size:44 final size:44
Alignment explanation
Indices: 99778--99862 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
99768 TTAACTTATG
* * *
99778 AATGATTTATTACTAAGTTATGAATAATTTATTATTAAATTGTT
1 AATGATTTATTACTAAATTATGAATAATTTATAATAAAATTGTT
* *
99822 AATGATTTATTACTAAATTACTG-ATGATTTGTAATAAAATT
1 AATGATTTATTACTAAATTA-TGAATAATTTATAATAAAATT
99863 ATAACTAATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.40, C:0.04, G:0.09, T:0.47
Consensus pattern (44 bp):
AATGATTTATTACTAAATTATGAATAATTTATAATAAAATTGTT
Found at i:99928 original size:52 final size:52
Alignment explanation
Indices: 99864--99968 Score: 140
Period size: 52 Copynumber: 2.0 Consensus size: 52
99854 AATAAAATTA
* * * *
99864 TAACTAATTTACTATTAATTTATTAATGATTTACTAC-AAAGATATCAATAAT
1 TAACTAATTTACTACTAAATTATTAATAATTTAATACTAAA-ATATCAATAAT
* *
99916 TAACTAATTTACTACTAAATTATTACTAATTTAATACTAAACTATCAATAAT
1 TAACTAATTTACTACTAAATTATTAATAATTTAATACTAAAATATCAATAAT
99968 T
1 T
99969 TACATATAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
52 43 0.93
53 3 0.07
ACGTcount: A:0.45, C:0.11, G:0.02, T:0.42
Consensus pattern (52 bp):
TAACTAATTTACTACTAAATTATTAATAATTTAATACTAAAATATCAATAAT
Found at i:99944 original size:22 final size:22
Alignment explanation
Indices: 99918--99995 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
99908 TCAATAATTA
*
99918 ACTAATTTACTACTAAATTATT
1 ACTAATTTACTACTAAATTATC
* *
99940 ACTAATTTAATACTAAACTATC
1 ACTAATTTACTACTAAATTATC
*
99962 AATAATTTACATA-TAAATTATC
1 ACTAATTTAC-TACTAAATTATC
* *
99984 AATGATTTACTA
1 ACTAATTTACTA
99996 TTTTGTTATT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
21 2 0.04
22 44 0.92
23 2 0.04
ACGTcount: A:0.45, C:0.13, G:0.01, T:0.41
Consensus pattern (22 bp):
ACTAATTTACTACTAAATTATC
Found at i:100004 original size:22 final size:22
Alignment explanation
Indices: 99979--100042 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
99969 TACATATAAA
99979 TTATCAATGATTTACTATTTTG
1 TTATCAATGATTTACTATTTTG
*
100001 TTAT-TATGTATTTACTATTTTG
1 TTATCAATG-ATTTACTATTTTG
* *
100023 TTATCATTAATTTACTATTT
1 TTATCAATGATTTACTATTT
100043 AGTTTTTGAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.06, T:0.59
Consensus pattern (22 bp):
TTATCAATGATTTACTATTTTG
Found at i:100057 original size:22 final size:21
Alignment explanation
Indices: 99988--100061 Score: 85
Period size: 22 Copynumber: 3.4 Consensus size: 21
99978 ATTATCAATG
*
99988 ATTTACTATTTTGTTATTATGT
1 ATTTACTATTTTGTTTTTAT-T
* *
100010 ATTTACTATTTTGTTATCATT
1 ATTTACTATTTTGTTTTTATT
*
100031 AATTTACTATTTAGTTTTTGATT
1 -ATTTACTATTTTGTTTTT-ATT
100054 ATTTACTA
1 ATTTACTA
100062 CAAAATAATC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.02
22 42 0.91
23 3 0.07
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.61
Consensus pattern (21 bp):
ATTTACTATTTTGTTTTTATT
Found at i:100101 original size:23 final size:23
Alignment explanation
Indices: 100055--100101 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
100045 TTTTTGATTA
*
100055 TTTACTACAAAATAATCATAGAT
1 TTTACTACAAAATAACCATAGAT
*
100078 TTTATTACAAAATTAACCAT-GAT
1 TTTACTACAAAA-TAACCATAGAT
100101 T
1 T
100102 CATTATCAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.45, C:0.13, G:0.04, T:0.38
Consensus pattern (23 bp):
TTTACTACAAAATAACCATAGAT
Found at i:100136 original size:21 final size:23
Alignment explanation
Indices: 100112--100159 Score: 57
Period size: 21 Copynumber: 2.2 Consensus size: 23
100102 CATTATCAAG
100112 TTATTAC-TAATTTA-TATTAAA
1 TTATTACATAATTTACTATTAAA
* *
100133 TTA-TCCATAATTTACTATTAAG
1 TTATTACATAATTTACTATTAAA
100155 TTATT
1 TTATT
100160 TGACTATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.09
21 10 0.45
22 9 0.41
23 1 0.05
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (23 bp):
TTATTACATAATTTACTATTAAA
Found at i:100177 original size:15 final size:16
Alignment explanation
Indices: 100142--100184 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
100132 ATTATCCATA
*
100142 ATTT-ACTATTAAGTT
1 ATTTGACTATTAAATT
100157 ATTTGACTATTAAATT
1 ATTTGACTATTAAATT
*
100173 A-TTGATTATTAA
1 ATTTGACTATTAA
100185 CTACTACTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.37, C:0.05, G:0.07, T:0.51
Consensus pattern (16 bp):
ATTTGACTATTAAATT
Found at i:100278 original size:44 final size:42
Alignment explanation
Indices: 100186--100284 Score: 110
Period size: 44 Copynumber: 2.3 Consensus size: 42
100176 GATTATTAAC
* *
100186 TACTACTAAATTGTATTGTTTTACTTTTAAATTTCAATAATA
1 TACTACTAAATTATATTGATTTACTTTTAAATTTCAATAATA
* ** *
100228 AACTACTAAATTATCATTGATTTA-TTATTAAATTATTTATAATT
1 TACTACTAAATTAT-ATTGATTTACTT-TTAAATT-TCAATAATA
100272 TACTACTAAATTA
1 TACTACTAAATTA
100285 ATCAATTAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
42 14 0.30
43 15 0.32
44 18 0.38
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.48
Consensus pattern (42 bp):
TACTACTAAATTATATTGATTTACTTTTAAATTTCAATAATA
Found at i:100361 original size:22 final size:22
Alignment explanation
Indices: 100316--100382 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
100306 TGAAATTTAC
*
100316 TTACTATTAAGTTATCACTAAT
1 TTACTATTAAGTTATAACTAAT
* *
100338 TTACTATTAAGTTATAATTGAT
1 TTACTATTAAGTTATAACTAAT
**
100360 TTTTTATTAAGTTATTAA-TAAT
1 TTACTATTAAGTTA-TAACTAAT
100382 T
1 T
100383 AAAAACTAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 35 0.92
23 3 0.08
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (22 bp):
TTACTATTAAGTTATAACTAAT
Found at i:100697 original size:22 final size:22
Alignment explanation
Indices: 100672--100787 Score: 90
Period size: 22 Copynumber: 5.2 Consensus size: 22
100662 ATAAAAAAAG
* * *
100672 TTATCAATGATTGACAATTAAT
1 TTATCAATGATTTACTATTAAA
* **
100694 TTATCAATTATTTACTATTACG
1 TTATCAATGATTTACTATTAAA
* *
100716 TTATCAAAGATTTACTACTAAA
1 TTATCAATGATTTACTATTAAA
*
100738 TTATCAATGATATTTACT-TCTAAT
1 TTATCAATG--ATTTACTAT-TAAA
* * *
100762 TTATGAATGATTTACCATTAAG
1 TTATCAATGATTTACTATTAAA
100784 TTAT
1 TTAT
100788 AAAATATTTA
Statistics
Matches: 74, Mismatches: 16, Indels: 8
0.76 0.16 0.08
Matches are distributed among these distances:
22 55 0.74
23 1 0.01
24 18 0.24
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.45
Consensus pattern (22 bp):
TTATCAATGATTTACTATTAAA
Found at i:100755 original size:24 final size:24
Alignment explanation
Indices: 100725--100772 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
100715 GTTATCAAAG
100725 ATTTACTACTAAATTATCAATGAT
1 ATTTACTACTAAATTATCAATGAT
* * *
100749 ATTTACTTCTAATTTATGAATGAT
1 ATTTACTACTAAATTATCAATGAT
100773 TTACCATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.38, C:0.10, G:0.06, T:0.46
Consensus pattern (24 bp):
ATTTACTACTAAATTATCAATGAT
Found at i:100818 original size:22 final size:22
Alignment explanation
Indices: 100762--100818 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
100752 TACTTCTAAT
*
100762 TTATGAATGATTTACCATTAAG
1 TTATGAATAATTTACCATTAAG
* *
100784 TTAT-AAAATATTTATCATTAAG
1 TTATGAATA-ATTTACCATTAAG
*
100806 TTGTGAATAATTT
1 TTATGAATAATTT
100819 CTCTTAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
21 2 0.07
22 23 0.82
23 3 0.11
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.46
Consensus pattern (22 bp):
TTATGAATAATTTACCATTAAG
Found at i:101068 original size:22 final size:21
Alignment explanation
Indices: 101016--101069 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
101006 TACATTATTA
101016 ATTTACTATTAAATTTCAATT
1 ATTTACTATTAAATTTCAATT
* * **
101037 ATTTATTATTACATTTTTATAT
1 ATTTACTATTAAATTTCAAT-T
101059 ATTTACTATTA
1 ATTTACTATTA
101070 GGGTATCATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.35, C:0.07, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTACTATTAAATTTCAATT
Found at i:101206 original size:22 final size:21
Alignment explanation
Indices: 101169--101303 Score: 67
Period size: 22 Copynumber: 6.2 Consensus size: 21
101159 GTTATTACTA
* *
101169 ATTTA-TATTAAATTATGCATG
1 ATTTATTATTAAGTTAT-AATG
*
101190 ATTTATTATTAAGTTATTATTG
1 ATTTATTATTAAGTTA-TAATG
* * * *
101212 ATTAACTATTATGTTATAAATT
1 ATTTATTATTAAGTTAT-AATG
* *
101234 ATTTATTACTAAGTTATATTG
1 ATTTATTATTAAGTTATAATG
* *
101255 ACTTACTT-TTAAGTTTTCAATG
1 ATTTA-TTATTAAGTTAT-AATG
* * * *
101277 ATTAACTATTAAATTATCAATT
1 ATTTATTATTAAGTTAT-AATG
101299 ATTTA
1 ATTTA
101304 CTGCTAATTT
Statistics
Matches: 83, Mismatches: 25, Indels: 11
0.70 0.21 0.09
Matches are distributed among these distances:
21 20 0.24
22 62 0.75
23 1 0.01
ACGTcount: A:0.36, C:0.06, G:0.07, T:0.51
Consensus pattern (21 bp):
ATTTATTATTAAGTTATAATG
Found at i:101364 original size:22 final size:22
Alignment explanation
Indices: 101339--101635 Score: 82
Period size: 22 Copynumber: 13.6 Consensus size: 22
101329 TCAATTAATT
* *
101339 CTATTAAACTAAAATTGATTTA
1 CTATTAAATTATAATTGATTTA
* * *
101361 CTATTAAATTATTACTAATTTA
1 CTATTAAATTATAATTGATTTA
*
101383 CTATTAAATTATCATTGATTTA
1 CTATTAAATTATAATTGATTTA
* * * * *
101405 TTACTAAGTTATCAA-TAATTAA
1 CTATTAAATTAT-AATTGATTTA
* * * *
101427 CTACTAAATTATCATTTATTTT
1 CTATTAAATTATAATTGATTTA
* * * **
101449 TTGTTAAGTTATCCTTGATTTA
1 CTATTAAATTATAATTGATTTA
* ** * **
101471 ATATTATGTTATTATACATTTA
1 CTATTAAATTATAATTGATTTA
* * *
101493 CAACTATATTATAATTGATTT-
1 CTATTAAATTATAATTGATTTA
* ** * * *
101514 CCATTAAGGTATTA-TCATATA
1 CTATTAAATTATAATTGATTTA
* * * *
101535 TTATTATATTATTACTGATTTA
1 CTATTAAATTATAATTGATTTA
** *
101557 C-AAAAAAGTTATCAATT-ATTTG
1 CTATTAAA-TTAT-AATTGATTTA
* * * *
101579 TTACTAAATTATCATTTATTTA
1 CTATTAAATTATAATTGATTTA
* * * *
101601 TTATTAAGTTATCATTAATTTA
1 CTATTAAATTATAATTGATTTA
101623 CTATTAAATTATA
1 CTATTAAATTATA
101636 GATGATTATT
Statistics
Matches: 193, Mismatches: 74, Indels: 16
0.68 0.26 0.06
Matches are distributed among these distances:
20 4 0.02
21 24 0.12
22 158 0.82
23 7 0.04
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.49
Consensus pattern (22 bp):
CTATTAAATTATAATTGATTTA
Found at i:101424 original size:44 final size:44
Alignment explanation
Indices: 101327--101461 Score: 130
Period size: 44 Copynumber: 3.1 Consensus size: 44
101317 ATTGATTTGC
* ** * *
101327 TATCAATTAA-TT-CTATTAAACTAAAATTGATTTACTATTAAAT
1 TATCAA-TAATTTACTATTAAATTATCATTGATTTATTATTAAGT
* * *
101370 TATTACTAATTTACTATTAAATTATCATTGATTTATTACTAAGT
1 TATCAATAATTTACTATTAAATTATCATTGATTTATTATTAAGT
* * * * *
101414 TATCAATAATTAACTACTAAATTATCATTTATTTTTTGTTAAGT
1 TATCAATAATTTACTATTAAATTATCATTGATTTATTATTAAGT
101458 TATC
1 TATC
101462 CTTGATTTAA
Statistics
Matches: 74, Mismatches: 16, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 3 0.04
43 6 0.08
44 65 0.88
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.48
Consensus pattern (44 bp):
TATCAATAATTTACTATTAAATTATCATTGATTTATTATTAAGT
Found at i:102596 original size:148 final size:149
Alignment explanation
Indices: 102317--102597 Score: 332
Period size: 148 Copynumber: 1.9 Consensus size: 149
102307 TATTCTTCAT
* * ** * * * *
102317 AAATTTACTTTTACTAAACAAAAACATGATATATTTTTTATTGTTGCTTTATTCTAATTACCATC
1 AAATTTACTTCTACTAAACAAAAACATAATATATTTTAAATTATTACTTCATTCTAATTACCATA
* * * *
102382 ATTTAAAATAACATTTTTGAAATTTTGATGCCAGTCAACTTCTCTATTTAAAAAGAGTAAAGAAT
66 ATTCAAAATAACATTTTTGAAATTTTGATACCAATCAACTTCTCTATTTAAAAAGAGTAAAAAAT
102447 ATTTTGCATTCTCCATTAA
131 ATTTTGCATTCTCCATTAA
* *
102466 AAATTT-CTTCTACTAAACGAAAACATAATATATTTTAAATTATTACTTCATTCTTATTACCATA
1 AAATTTACTTCTACTAAACAAAAACATAATATATTTTAAATTATTACTTCATTCTAATTACCATA
** * * * * * **
102530 ATTCAAAATGGCTTTTTTGATATTTTGATATCAATTAATTTCT-TCATTTGGAAAGAGTAAAAAA
66 ATTCAAAATAACATTTTTGAAATTTTGATACCAATCAACTTCTCT-ATTTAAAAAGAGTAAAAAA
102594 TATT
130 TATT
102598 ATAAAGGGTC
Statistics
Matches: 108, Mismatches: 23, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
147 1 0.01
148 101 0.94
149 6 0.06
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (149 bp):
AAATTTACTTCTACTAAACAAAAACATAATATATTTTAAATTATTACTTCATTCTAATTACCATA
ATTCAAAATAACATTTTTGAAATTTTGATACCAATCAACTTCTCTATTTAAAAAGAGTAAAAAAT
ATTTTGCATTCTCCATTAA
Found at i:103313 original size:3 final size:3
Alignment explanation
Indices: 103293--103429 Score: 83
Period size: 3 Copynumber: 47.7 Consensus size: 3
103283 ATTCTCTTTG
* * * *
103293 TTA TTA GTA TT- TTT TTA TTA TTA TTA -TA GTA TAA TGTA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* * * *
103336 TTA TTA TTA TTA TTA -TA TTG TACA TTA TTA -TA TTA CTA -TA ATA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA
* * * * *
103379 TGA -TA GTA TTA TTA ATA TTA TTA ATA TTA TCA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
103425 TTA TT
1 TTA TT
103430 TTTCTATCCT
Statistics
Matches: 103, Mismatches: 21, Indels: 20
0.72 0.15 0.14
Matches are distributed among these distances:
2 15 0.15
3 85 0.83
4 3 0.03
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:104076 original size:10 final size:10
Alignment explanation
Indices: 104061--104090 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
104051 GAGGATAAAA
104061 TTATTATTTT
1 TTATTATTTT
104071 TTATTATTTT
1 TTATTATTTT
104081 TTATT-TTTT
1 TTATTATTTT
104090 T
1 T
104091 AATAAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.25
10 15 0.75
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (10 bp):
TTATTATTTT
Found at i:105137 original size:3 final size:3
Alignment explanation
Indices: 105131--105162 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
105121 GATGATGATG
105131 ATA ATA ATA ATA ATA ATA ATA ATA AT- ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
105163 CTATACATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:105798 original size:119 final size:119
Alignment explanation
Indices: 105683--106116 Score: 383
Period size: 119 Copynumber: 3.6 Consensus size: 119
105673 GTGAGTCAGG
* * * *
105683 AAATGATATGGACAGAACCGAGATCGAATGACCAAGATAAAATCGTAAGTCTAAAGATAAAGTGA
1 AAATGATCTAGACTGAACCAAGATCGAATGACCAAGATAAAATCGTAAGTCTAAAGATAAAGTGA
* * ** *
105748 TCAAGATCGAGTCGAGATCGAAGATGACTAATTGAGACAAAATTACGAGTCAAG
66 TCAAGATCGAGTCGAGGTCGAAGATGACTAATTGAGACGAAACCACGAGTCAAA
* * ** * * ** * * *
105802 AAATGATCTAAACTTAGTCGAGATCAAATGACCTGGATAAAATTGTGAGTCTAAAAATAAAGT-A
1 AAATGATCTAGACTGAACCAAGATCGAATGACCAAGATAAAATCGTAAGTCTAAAGATAAAGTGA
* * * * * * * *
105866 ACTAGGATCGAGTCGAGGTCGAAGATGACTAATCGAAATGGAACCATGAGTCATA
66 TC-AAGATCGAGTCGAGGTCGAAGATGACTAATTGAGACGAAACCACGAGTCAAA
* * * *
105921 AAATGATCTAGATTGAACTAAGATCGAATGATC-AGAATAAAATCGTAAGTCTAAAGATAAAATG
1 AAATGATCTAGACTGAACCAAGATCGAATGACCAAG-ATAAAATCGTAAGTCTAAAGATAAAGTG
* * * * *
105985 ATCAGGATTGAGTCGAGGTCGAATGA-GATTAAGTGGGACGAAACCACGAGTCAAA
65 ATCAAGATCGAGTCGAGGTCGAA-GATGACTAATTGAGACGAAACCACGAGTCAAA
* * ** * * *
106040 AAATGATCTTGAC-GAAATCAAGATCGAATGATTAAGATGAAATTGCT-AGTCTAAAGATAAAGC
1 AAATGATCTAGACTG-AACCAAGATCGAATGACCAAGATAAAATCG-TAAGTCTAAAGATAAAGT
*
106103 GATCAAGACCGAGT
64 GATCAAGATCGAGT
106117 TGAAGTAAAA
Statistics
Matches: 245, Mismatches: 63, Indels: 14
0.76 0.20 0.04
Matches are distributed among these distances:
118 4 0.02
119 234 0.96
120 7 0.03
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (119 bp):
AAATGATCTAGACTGAACCAAGATCGAATGACCAAGATAAAATCGTAAGTCTAAAGATAAAGTGA
TCAAGATCGAGTCGAGGTCGAAGATGACTAATTGAGACGAAACCACGAGTCAAA
Found at i:106156 original size:119 final size:120
Alignment explanation
Indices: 106033--106544 Score: 337
Period size: 119 Copynumber: 4.3 Consensus size: 120
106023 CGAAACCACG
* * *
106033 AGTCAAAAAATGATCTTGACGAAATCAAGATCGAATGATTAAG-ATGAAATTGCTAGTCTAAAGA
1 AGTCAAGAAATGATCTAGACGAAATCAAGATCGAATGATTAAGAATGAAATTACTAGTCTAAAGA
* * * * *
106097 TAAAGCGATCAAGACCGAGTTGAAGTAAAAAATGACTGACCGAGATAGAATTGCA
66 TAAAGCGACCAAGACCAAGTTGAAGTCAAAGATGACTGACCGAGATAGAATTACA
* * * * * * *
106152 AGTCAAGAAATTATCTGGAC-TAAGCTAAGATCGAAT-ACT-GGAATGAAATTACAAGTCTAAAG
1 AGTCAAGAAATGATCTAGACGAAATC-AAGATCGAATGATTAAGAATGAAATTACTAGTCTAAAG
** * * * * ** * * * **
106214 ATAAAATGATCAAGATCAAG-TCAAGGTCAAATACAATTGACCTAGACAGAACCACA
65 ATAAAGCGACCAAGACCAAGTTGAA-GTCAAAGATGACTGACCGAGATAGAATTACA
* * ** * *
106270 AGTCAAGAAATGATCTGGACGAAATTAAGATCGAATG-TTCGGAATGAAACTATTAGTCTAAAGA
1 AGTCAAGAAATGATCTAGACGAAATCAAGATCGAATGATTAAGAATGAAATTACTAGTCTAAAGA
* * ** * * * *
106334 TAAAGCAACCAAGACCAAGTCGGGGTTAAAGATGACTGATCGAAATAGAA-TAGGA
66 TAAAGCGACCAAGACCAAGTTGAAGTCAAAGATGACTGACCGAGATAGAATTA-CA
* * * * * * * *
106389 AATCAAGAAATGATCTAGATGGAACCGAGATCGAATAATCAA-AAT-AACA-T-CGTGAGTCAAA
1 AGTCAAGAAATGATCTAGACGAAATCAAGATCGAATGATTAAGAATGAA-ATTAC-T-AGTCTAA
* * * * * * * *
106450 AAATAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGACCAAGATAAAATTACG
63 AGATAAAGCGACCAAGACCAAGTTGAAGTCAAAGATGACTGACCGAGATAGAATTACA
* * *
106508 AGTCAAAAAATGATCTAGATGAAA-CAAGATTGAATGA
1 AGTCAAGAAATGATCTAGACGAAATCAAGATCGAATGA
106545 CCAGGATGAA
Statistics
Matches: 295, Mismatches: 85, Indels: 27
0.72 0.21 0.07
Matches are distributed among these distances:
117 4 0.01
118 105 0.36
119 183 0.62
120 3 0.01
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.21
Consensus pattern (120 bp):
AGTCAAGAAATGATCTAGACGAAATCAAGATCGAATGATTAAGAATGAAATTACTAGTCTAAAGA
TAAAGCGACCAAGACCAAGTTGAAGTCAAAGATGACTGACCGAGATAGAATTACA
Found at i:106751 original size:356 final size:356
Alignment explanation
Indices: 106087--106847 Score: 839
Period size: 356 Copynumber: 2.1 Consensus size: 356
106077 TGAAATTGCT
* * * * * * * * * * *
106087 AGTCTAAAGATAAAGCGATCAAGACCGAGTTGAAGTAAAAAATGACTGACCGAGATAGAATTGCA
1 AGTCAAAAAATAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGACCAAGATAAAATTACA
* * * * * * * *
106152 AGTCAAGAAATTATCTGGACTAAGCTAAGATCGAATACTGGAATGAAATTACAAGTCTAAAGATA
66 AGTCAAAAAATGATCTAGACTAAACTAAGATCGAATACAGGAATGAAATCACAAGTCAAAAAATA
* * * *
106217 AAATGATCAAGATCAAGTCAAGGTCAAATACAATTGACCTAGACAGAACCACAAGTCAAGAAATG
131 AAACGATCAAGATCAAGTCAAGGTCAAAGACAACTGACCGAGACAGAACCACAAGTCAAGAAATG
* * * * * * * * *
106282 ATCTGGACGAAATTAAGATCGAATGTTCGGAATGAAACTATTAGTCTAAAGATAAAGCAACCAAG
196 ATCTGGACAAAATTAAGATCGAATGATCGAAACGAAACCATGAGTCAAAAAATAAAGCAACCAAA
** ** * *
106347 ACCAAGTCGGGGTTAAAGATGACTGATCGAAATAGAATAGGAAATCAAGAAATGATCTAGATGGA
261 ACCAAGTCAAGGCCAAAGATGACTGATCGAAATAGAACAGGAAATCAAGAAATGATCTAGATGAA
* * *
106412 ACCGAGATCGAATAATCAAAATAACATCGTG
326 ACCGAGATCGAATAACCAAAATAACACCGCG
*
106443 AGTCAAAAAATAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGACCAAGATAAAATTACG
1 AGTCAAAAAATAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGACCAAGATAAAATTACA
*
106508 AGTCAAAAAATGATCTAGA-TGAAAC-AAGATTGAATGACCAGG-ATGAAATCACAAGTCAAAAA
66 AGTCAAAAAATGATCTAGACT-AAACTAAGATCGAAT-A-CAGGAATGAAATCACAAGTCAAAAA
* * * * * *
106570 ATAAAACGATCAGGATCGAGTCAAGGTTAAAGATAACTGACCGATACAGAACCATGAA-TCAAGA
128 ATAAAACGATCAAGATCAAGTCAAGGTCAAAGACAACTGACCGAGACAGAACCA-CAAGTCAAGA
* * *
106634 AATGATCTGGATAAAATTGAGATCGAATGATCGAAACGAAACCATGAGTCAAAAAATAAAGCGAC
192 AATGATCTGGACAAAATTAAGATCGAATGATCGAAACGAAACCATGAGTCAAAAAATAAAGCAAC
** * * * * * * *
106699 CAAAACTGATTCAAGGCCAAAGATGATTGATTGAGATAGAACCATG-AATCAAGAAATGATTTGG
257 CAAAACCAAGTCAAGGCCAAAGATGACTGATCGAAATAGAA-CAGGAAATCAAGAAATGATCTAG
* * * *
106763 GTGAAACTGAGATCGAATAACCAGAATGACACCGCG
321 ATGAAACCGAGATCGAATAACCAAAATAACACCGCG
* *
106799 AGTCAAAAAATAAAGTGACCAAGACTGAGTTAAGGTCAAAGATGATTGA
1 AGTCAAAAAATAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGA
106848 TCGGGATGGA
Statistics
Matches: 333, Mismatches: 67, Indels: 10
0.81 0.16 0.02
Matches are distributed among these distances:
355 10 0.03
356 316 0.95
357 7 0.02
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.20
Consensus pattern (356 bp):
AGTCAAAAAATAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGACCAAGATAAAATTACA
AGTCAAAAAATGATCTAGACTAAACTAAGATCGAATACAGGAATGAAATCACAAGTCAAAAAATA
AAACGATCAAGATCAAGTCAAGGTCAAAGACAACTGACCGAGACAGAACCACAAGTCAAGAAATG
ATCTGGACAAAATTAAGATCGAATGATCGAAACGAAACCATGAGTCAAAAAATAAAGCAACCAAA
ACCAAGTCAAGGCCAAAGATGACTGATCGAAATAGAACAGGAAATCAAGAAATGATCTAGATGAA
ACCGAGATCGAATAACCAAAATAACACCGCG
Found at i:106842 original size:119 final size:119
Alignment explanation
Indices: 106389--106882 Score: 406
Period size: 119 Copynumber: 4.2 Consensus size: 119
106379 TAGAATAGGA
* * * * * **
106389 AATCAAGAAATGATCTAGATGGAACCGAGATCGAATAATCAAAAT-AACATCGTGAGTCAAAAAA
1 AATCAAGAAATGATCTAGATGAAACTGAGATCGAATAACCAGAATGAA-ACCACGAGTCAAAAAA
* * * * * ** *
106453 TAAAGTGACCAAGACCGAGTTGAGGTCAAAGATGATTGACCAAGATAAAATTACG
65 TAAAGCGACCAAGACTGAGTTAAGGTCAAAGATGATTGACCGAGATAGAACCATG
* * * * * * * *
106508 AGTCAAAAAATGATCTAGATGAAAC-AAGATTGAATGACCAGGATGAAATCACAAGTCAAAAAAT
1 AATCAAGAAATGATCTAGATGAAACTGAGATCGAATAACCAGAATGAAACCACGAGTCAAAAAAT
* * * * * * * * *
106572 AAAACGATCAGGA-TCGAGTCAAGGTTAAAGATAACTGACCGATACAGAACCATG
66 AAAGCGACCAAGACT-GAGTTAAGGTCAAAGATGATTGACCGAGATAGAACCATG
* * * * * * *
106626 AATCAAGAAATGATCTGGATAAAATTGAGATCGAATGATC-GAAACGAAACCATGAGTCAAAAAA
1 AATCAAGAAATGATCTAGATGAAACTGAGATCGAATAACCAG-AATGAAACCACGAGTCAAAAAA
* * **
106690 TAAAGCGACCAAAACTGA-TTCAAGGCCAAAGATGATTGATTGAGATAGAACCATG
65 TAAAGCGACCAAGACTGAGTT-AAGGTCAAAGATGATTGACCGAGATAGAACCATG
* * * * *
106745 AATCAAGAAATGATTTGGGTGAAACTGAGATCGAATAACCAGAATGACACCGCGAGTCAAAAAAT
1 AATCAAGAAATGATCTAGATGAAACTGAGATCGAATAACCAGAATGAAACCACGAGTCAAAAAAT
* * * * * **
106810 AAAGTGACCAAGACTGAGTTAAGGTCAAAGATGATTGATCGGGATGGAATCGCG
66 AAAGCGACCAAGACTGAGTTAAGGTCAAAGATGATTGACCGAGATAGAACCATG
106864 AATCAA-AAATTGATCTAGA
1 AATCAAGAAA-TGATCTAGA
106883 CTGAGCTGAA
Statistics
Matches: 289, Mismatches: 77, Indels: 18
0.75 0.20 0.05
Matches are distributed among these distances:
118 88 0.30
119 197 0.68
120 4 0.01
ACGTcount: A:0.45, C:0.14, G:0.21, T:0.19
Consensus pattern (119 bp):
AATCAAGAAATGATCTAGATGAAACTGAGATCGAATAACCAGAATGAAACCACGAGTCAAAAAAT
AAAGCGACCAAGACTGAGTTAAGGTCAAAGATGATTGACCGAGATAGAACCATG
Found at i:111638 original size:11 final size:9
Alignment explanation
Indices: 111601--111636 Score: 63
Period size: 9 Copynumber: 3.9 Consensus size: 9
111591 AGGATAAAAT
111601 TATTTTTTA
1 TATTTTTTA
111610 TATTTTTTA
1 TATTTTTTA
111619 TATTTTTTA
1 TATTTTTTA
111628 TATGTTTTT
1 TAT-TTTTT
111637 TAAGAAAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 21 0.81
10 5 0.19
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (9 bp):
TATTTTTTA
Found at i:112337 original size:20 final size:19
Alignment explanation
Indices: 112293--112339 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
112283 CCAGATCCTT
*
112293 CCAAAAACTTAAACCTGAT
1 CCAAAAACTTAAACCTGAA
112312 CCAAAAACTTAAATCCT-AA
1 CCAAAAACTTAAA-CCTGAA
112331 CCTAAAAAC
1 CC-AAAAAC
112340 CTTGAAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 16 0.64
20 9 0.36
ACGTcount: A:0.51, C:0.28, G:0.02, T:0.19
Consensus pattern (19 bp):
CCAAAAACTTAAACCTGAA
Found at i:114640 original size:37 final size:37
Alignment explanation
Indices: 114549--114721 Score: 240
Period size: 37 Copynumber: 4.5 Consensus size: 37
114539 TTATACTTGC
114549 TTAATTAATTATTTATTTATTTCTTATACTTGCTTTAA
1 TTAATTAATTATTTATTTATTTCTTATACTTGC-TTAA
114587 TTAATTAATTATTTATTTATTTATTTCTTATACTTGCTTAA
1 TTAATT-A--A-TTATTTATTTATTTCTTATACTTGCTTAA
114628 TTAATTAATTATTTATTTATTTCTTATACTTGCTTAA
1 TTAATTAATTATTTATTTATTTCTTATACTTGCTTAA
*
114665 TTAATTATTTATTTTTACTTGT-TTTCTTATACTTGCTTAA
1 TTAATTAATTA--TTTA-TT-TATTTCTTATACTTGCTTAA
*
114705 TTAATTATTTATTTATT
1 TTAATTAATTATTTATT
114722 GTATATATAC
Statistics
Matches: 126, Mismatches: 1, Indels: 17
0.88 0.01 0.12
Matches are distributed among these distances:
37 41 0.33
38 11 0.09
39 5 0.04
40 32 0.25
41 12 0.10
42 25 0.20
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.62
Consensus pattern (37 bp):
TTAATTAATTATTTATTTATTTCTTATACTTGCTTAA
Found at i:125718 original size:3 final size:3
Alignment explanation
Indices: 125707--125802 Score: 60
Period size: 3 Copynumber: 33.3 Consensus size: 3
125697 TAGTATAATA
* * *
125707 TAT TA- TAT TAT TAT TAT TAC TAT CTAT TGT ACAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT -TAT TAT TAT TAT TAT
* * * * *
125752 TA- TAG TAT GA- TAG TAT GA- TAG TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
125797 T-T TAT T
1 TAT TAT T
125803 TTTCCTTCCT
Statistics
Matches: 72, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
2 10 0.14
3 58 0.81
4 4 0.06
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:125718 original size:8 final size:8
Alignment explanation
Indices: 125707--125802 Score: 61
Period size: 8 Copynumber: 11.5 Consensus size: 8
125697 TAGTATAATA
125707 TATTATAT
1 TATTATAT
125715 TA-T-TAT
1 TATTATAT
125721 TATTACTAT
1 TATTA-TAT
*
125730 CTATTGTACAT
1 -TA-T-TATAT
125741 TATTATAT
1 TATTATAT
*
125749 TATTATAG
1 TATTATAT
* *
125757 TATGATAG
1 TATTATAT
* *
125765 TATGATAG
1 TATTATAT
125773 TATTATTAT
1 TATTA-TAT
125782 TATTATTAT
1 TATTA-TAT
*
125791 TATTATTT
1 TATTATAT
125799 TATT
1 TATT
125803 TTTCCTTCCT
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
6 5 0.07
7 2 0.03
8 38 0.51
9 20 0.27
10 4 0.05
11 3 0.04
12 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.06, T:0.57
Consensus pattern (8 bp):
TATTATAT
Found at i:126428 original size:51 final size:51
Alignment explanation
Indices: 126370--126469 Score: 146
Period size: 51 Copynumber: 2.0 Consensus size: 51
126360 ATTTCAATAG
* * * * *
126370 CTTTTCCAAAAATTGATGGGTTTTCCAGTTTTCAATTGAATTTTTTGGTAA
1 CTTTTCCAAAAATCGAAGGATTTTCCAATTTTCAATTGAAGTTTTTGGTAA
*
126421 CTTTTCCAAAAATCGAAGGATTTTTCAATTTTCAATTGAAGTTTTTGGT
1 CTTTTCCAAAAATCGAAGGATTTTCCAATTTTCAATTGAAGTTTTTGGT
126470 CGGTGTTCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (51 bp):
CTTTTCCAAAAATCGAAGGATTTTCCAATTTTCAATTGAAGTTTTTGGTAA
Found at i:126687 original size:5 final size:5
Alignment explanation
Indices: 126669--126735 Score: 75
Period size: 5 Copynumber: 13.6 Consensus size: 5
126659 AAGGTTTTCT
* * * *
126669 TTTTT TTTTCA TTTTA -TTT- TTTGA TTTGA TTTGA TTTTA TTTTA TTTTA
1 TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
126718 TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTT
126736 ACCTTATTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
4 5 0.09
5 47 0.84
6 4 0.07
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:133671 original size:50 final size:51
Alignment explanation
Indices: 133608--133705 Score: 135
Period size: 50 Copynumber: 1.9 Consensus size: 51
133598 TCCTAAAAGG
*
133608 TAAAAATTGAAAGCCGCAACACCA-TTGTATACTCACAGAAAATGATACAT
1 TAAAAATTGAAAGCCGCAACACCATTTATATACTCACAGAAAATGATACAT
* * * *
133658 TAAAAATTGAAAGCCTCAAGATCATTTTATATACTCACAGAATATGAT
1 TAAAAATTGAAAGCCGCAACACCA-TTTATATACTCACAGAAAATGAT
133706 GCAGTTAAGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 21 0.51
52 20 0.49
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.27
Consensus pattern (51 bp):
TAAAAATTGAAAGCCGCAACACCATTTATATACTCACAGAAAATGATACAT
Found at i:134959 original size:28 final size:28
Alignment explanation
Indices: 134927--134982 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
134917 CATGAATCCA
*
134927 GGAAAATGACATTTTAATGATTCAATAT
1 GGAAAATAACATTTTAATGATTCAATAT
134955 GGAAAATAACATTTTAATGATTCAATAT
1 GGAAAATAACATTTTAATGATTCAATAT
134983 TATAGTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.36
Consensus pattern (28 bp):
GGAAAATAACATTTTAATGATTCAATAT
Found at i:147966 original size:6 final size:6
Alignment explanation
Indices: 147955--147988 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
147945 AAGAGGTCTA
*
147955 GGCAAT GGCAAT GGCAAT GGCAAT GGCATT GGCA
1 GGCAAT GGCAAT GGCAAT GGCAAT GGCAAT GGCA
147989 CAGGCACATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.29, C:0.18, G:0.35, T:0.18
Consensus pattern (6 bp):
GGCAAT
Found at i:147994 original size:18 final size:17
Alignment explanation
Indices: 147954--147994 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
147944 GAAGAGGTCT
147954 AGGCAATGGCAATGGCA
1 AGGCAATGGCAATGGCA
*
147971 ATGGCAATGGCATTGGCA
1 A-GGCAATGGCAATGGCA
147989 CAGGCA
1 -AGGCA
147995 CATTCACATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.32, C:0.20, G:0.34, T:0.15
Consensus pattern (17 bp):
AGGCAATGGCAATGGCA
Found at i:148183 original size:2 final size:2
Alignment explanation
Indices: 148176--148204 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
148166 CTTGCCAAAC
148176 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
148205 AACTTGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:154886 original size:22 final size:22
Alignment explanation
Indices: 154861--154919 Score: 59
Period size: 22 Copynumber: 2.6 Consensus size: 22
154851 AATTAATGAG
*
154861 TAATTATTAT-AATATTATATTA
1 TAATTATTATAAATA-CATATTA
*
154883 TAATACATT-TAAATACATATTA
1 TAAT-TATTATAAATACATATTA
154905 TAATTATTATTAAAT
1 TAATTATTA-TAAAT
154920 GTAATATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
21 3 0.10
22 15 0.50
23 12 0.40
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.49
Consensus pattern (22 bp):
TAATTATTATAAATACATATTA
Found at i:156218 original size:18 final size:18
Alignment explanation
Indices: 156158--156219 Score: 57
Period size: 17 Copynumber: 3.8 Consensus size: 18
156148 ATTAATCATT
*
156158 TTTATTTAAA-ATTAAAA
1 TTTATTTAAATATAAAAA
156175 TTTATTTAAATAT--AAA
1 TTTATTTAAATATAAAAA
*
156191 -TTA---AAGTATAAAAA
1 TTTATTTAAATATAAAAA
156205 TTTATTTAAATATAA
1 TTTATTTAAATATAA
156220 TAAAATTATC
Statistics
Matches: 36, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
12 5 0.14
14 3 0.08
15 6 0.17
16 3 0.08
17 10 0.28
18 9 0.25
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
TTTATTTAAATATAAAAA
Found at i:156228 original size:19 final size:19
Alignment explanation
Indices: 156191--156228 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
156181 TAAATATAAA
*
156191 TTAAAGTATAAAAATTTAT
1 TTAAAGTATAAAAAATTAT
156210 TTAAA-TATAATAAAATTAT
1 TTAAAGTATAA-AAAATTAT
156229 CAAAGTTTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TTAAAGTATAAAAAATTAT
Found at i:157439 original size:26 final size:27
Alignment explanation
Indices: 157396--157453 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
157386 AATTATTGTA
* *
157396 AAATATTTAATATAATATTTAATTTTT
1 AAATATTTAATATAATATTTAAATTAT
* *
157423 AAAT-TTTAATGTGATATTTAAATTAT
1 AAATATTTAATATAATATTTAAATTAT
157449 AAATA
1 AAATA
157454 CATTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (27 bp):
AAATATTTAATATAATATTTAAATTAT
Found at i:158049 original size:2 final size:2
Alignment explanation
Indices: 158042--158074 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
158032 GGTTTTGAGA
158042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
158075 AGGAAAATTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:158494 original size:2 final size:2
Alignment explanation
Indices: 158487--158512 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
158477 TACTACATAC
158487 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
158513 GCATATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:160379 original size:62 final size:64
Alignment explanation
Indices: 160264--160384 Score: 156
Period size: 64 Copynumber: 1.9 Consensus size: 64
160254 ATTTTTAGCC
* * * * *
160264 AAAAACGCCTTCAATAACCCATTCAAAAAAATTTGGAGATGGATTATTAAAGGTGTTTTCAACT
1 AAAAACGCCTTCAATAACCCATACAAAAAAAGTTGCAGATAGATTATTAAAGGTATTTTCAACT
* * *
160328 AAAAACTCCTTTAATAATCCATAC-AAAAAAGTTGCAGA-AGATTATTAAAGGTATTTT
1 AAAAACGCCTTCAATAACCCATACAAAAAAAGTTGCAGATAGATTATTAAAGGTATTTT
160385 TGATCAGAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
62 17 0.35
63 12 0.24
64 20 0.41
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (64 bp):
AAAAACGCCTTCAATAACCCATACAAAAAAAGTTGCAGATAGATTATTAAAGGTATTTTCAACT
Found at i:162723 original size:2 final size:2
Alignment explanation
Indices: 162678--162712 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
162668 AACATTGTAG
162678 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
162713 CACGTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:162787 original size:3 final size:3
Alignment explanation
Indices: 162779--162811 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
162769 AGTTTTAATC
*
162779 ATT ATT ATT ATT GTT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
162812 TTGACAATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:163505 original size:2 final size:2
Alignment explanation
Indices: 163498--163535 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
163488 TGTCTTATGC
163498 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
163536 TCTTAATTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:167808 original size:17 final size:17
Alignment explanation
Indices: 167786--167827 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
167776 GATAACAACA
167786 AAATAAAAGAAAAAAGC
1 AAATAAAAGAAAAAAGC
167803 AAATAAAAGAAAAAAGC
1 AAATAAAAGAAAAAAGC
167820 AAATAAAA
1 AAATAAAA
167828 ACAGTAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.79, C:0.05, G:0.10, T:0.07
Consensus pattern (17 bp):
AAATAAAAGAAAAAAGC
Found at i:172932 original size:4 final size:4
Alignment explanation
Indices: 172919--172974 Score: 53
Period size: 4 Copynumber: 13.2 Consensus size: 4
172909 GTATCCTATG
172919 TATT TA-T TATT TATT TATT TA-T TATT ACTATT TATT TATAT ATATT
1 TATT TATT TATT TATT TATT TATT TATT --TATT TATT TAT-T -TATT
172965 TATAT TATT T
1 TAT-T TATT T
172975 TTTCTTTTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 14
0.76 0.00 0.24
Matches are distributed among these distances:
3 6 0.13
4 26 0.58
5 6 0.13
6 7 0.16
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (4 bp):
TATT
Found at i:173041 original size:20 final size:17
Alignment explanation
Indices: 173009--173056 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 17
172999 ATTTTATATG
*
173009 TATTTTTATTTATCTAGT
1 TATTATTATTTATCT-GT
173027 TATATATTCATTTATCTGT
1 TAT-TATT-ATTTATCTGT
173046 TATTATTATTT
1 TATTATTATTT
173057 TTTTATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.15
18 7 0.26
19 8 0.30
20 8 0.30
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (17 bp):
TATTATTATTTATCTGT
Found at i:173060 original size:45 final size:43
Alignment explanation
Indices: 173011--173118 Score: 110
Period size: 44 Copynumber: 2.4 Consensus size: 43
173001 TTTATATGTA
*
173011 TTTTTATTTATCTAGTTATA-TATTCATTTATCTGTTATTATTATT
1 TTTTTATTTATCTAGTAATATTATTCATTTATC--TTATTATT-TT
* * * *
173056 TTTTTATTTTTCTTGTAATATTGTTGATTTATCTTATTATTTT
1 TTTTTATTTATCTAGTAATATTATTCATTTATCTTATTATTTT
* *
173099 TTTTCTAATTATCTATTAAT
1 TTTT-TATTTATCTAGTAAT
173119 TTTTTTTATT
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
43 6 0.12
44 19 0.37
45 17 0.33
46 10 0.19
ACGTcount: A:0.23, C:0.06, G:0.05, T:0.66
Consensus pattern (43 bp):
TTTTTATTTATCTAGTAATATTATTCATTTATCTTATTATTTT
Found at i:173464 original size:26 final size:25
Alignment explanation
Indices: 173408--173466 Score: 66
Period size: 26 Copynumber: 2.4 Consensus size: 25
173398 TTTAAGAATC
* *
173408 GAAAA-TTTTTTTTGGAGATTTTTG
1 GAAAATTTTTTTTTGAAAATTTTTG
**
173432 GCGAATTTTTTTTCTGAAAATTTTTG
1 GAAAATTTTTTTT-TGAAAATTTTTG
173458 GAAAATTTT
1 GAAAATTTT
173467 CAGATTCCGG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
24 3 0.11
25 7 0.26
26 17 0.63
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.53
Consensus pattern (25 bp):
GAAAATTTTTTTTTGAAAATTTTTG
Found at i:174041 original size:6 final size:6
Alignment explanation
Indices: 174024--174098 Score: 55
Period size: 6 Copynumber: 12.0 Consensus size: 6
174014 GTTTATTTAA
* *
174024 TATTTT TAATTTT TA-TTT TATTTT TATTTT TGTTTT ACTTTTCTT TATTTT
1 TATTTT T-ATTTT TATTTT TATTTT TATTTT TATTTT --TATT-TT TATTTT
* *
174075 T-TTTAT TATTTT CACTTT TATTTT
1 TATTT-T TATTTT TATTTT TATTTT
174099 GTTTTATTTT
Statistics
Matches: 55, Mismatches: 7, Indels: 14
0.72 0.09 0.18
Matches are distributed among these distances:
5 8 0.15
6 30 0.55
7 12 0.22
8 3 0.05
9 2 0.04
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:174044 original size:5 final size:5
Alignment explanation
Indices: 174034--174108 Score: 50
Period size: 5 Copynumber: 14.8 Consensus size: 5
174024 TATTTTTAAT
* *
174034 TTTTA TTTTA TTTTTA TTTTTG TTTTA CTTTT- CTTTA TTTT- TTTTA
1 TTTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
*
174080 --TTA TTTTCA CTTTTA TTTTG TTTTA TTTT
1 TTTTA TTTT-A -TTTTA TTTTA TTTTA TTTT
174109 CTTTAAATAA
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
3 3 0.05
4 7 0.12
5 26 0.46
6 16 0.29
7 4 0.07
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:174047 original size:18 final size:17
Alignment explanation
Indices: 174024--174098 Score: 64
Period size: 17 Copynumber: 4.4 Consensus size: 17
174014 GTTTATTTAA
174024 TATTTTTAATTTTTATTT
1 TATTTTT-ATTTTTATTT
*
174042 TATTTTTATTTTTGTTT
1 TATTTTTATTTTTATTT
* *
174059 TACTTTTCTTTATT-TTT
1 TATTTTTATTT-TTATTT
* *
174076 T-TTATTATTTTCACTTT
1 TATTTTTATTTTTA-TTT
174093 TATTTT
1 TATTTT
174099 GTTTTATTTT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
15 1 0.02
16 6 0.13
17 26 0.58
18 12 0.27
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (17 bp):
TATTTTTATTTTTATTT
Found at i:174105 original size:34 final size:33
Alignment explanation
Indices: 174033--174113 Score: 85
Period size: 34 Copynumber: 2.5 Consensus size: 33
174023 ATATTTTTAA
**
174033 TTTTTATTTTATTT-TTATTTTTGTTTTACTTT
1 TTTTTATTTTATTTATTATTTTACTTTTACTTT
* *
174065 TCTTTATTTTTTTTATTATTTTCACTTTTA-TTT
1 TTTTTATTTTATTTATTATTTT-ACTTTTACTTT
*
174098 TGTTTTATTTTCTTTA
1 T-TTTTATTTTATTTA
174114 AATAAAAATA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
32 12 0.30
33 11 0.28
34 17 0.43
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (33 bp):
TTTTTATTTTATTTATTATTTTACTTTTACTTT
Found at i:174196 original size:59 final size:58
Alignment explanation
Indices: 174126--174515 Score: 486
Period size: 59 Copynumber: 6.7 Consensus size: 58
174116 TAAAAATAAA
* *
174126 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTTTC
** * *
174185 AAAAAATATTTTT-GAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTT
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTTC
** * * *
174241 AAAAAAGGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTTC
1 AAAAAA-TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTTTC
* * *
174301 AAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAG-TTTC
1 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTTTC
*
174359 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTTTC
1 -AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTTC
** *
174417 AAAAAATAAATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCC-TCAAAATTAAAG-TTTC
1 AAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-TAAAGTTTTC
*
174476 AAAAGAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AAAA-AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
174516 TCCTACACAG
Statistics
Matches: 291, Mismatches: 29, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
56 9 0.03
57 15 0.05
58 107 0.37
59 147 0.51
60 13 0.04
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTTC
Found at i:174511 original size:117 final size:117
Alignment explanation
Indices: 174125--174515 Score: 540
Period size: 118 Copynumber: 3.3 Consensus size: 117
174115 ATAAAAATAA
* * * *
174125 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATCAAAGTTTCCAAAAA
1 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTTCAAAAA
* * * *
174190 ATATTTTTGAA--AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
66 ATATTTTT-AAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTC
*** * *
174241 AAAAAAGGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTCGAAAATAAAAGTTTTCAAAAA
1 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTTCAAAAA
* *
174306 ATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAAGTTTC
66 ATATTTTTAAG-GAAAAGTTGAAAGTATCAATTTTCCTCAAAATT-AAAGTTTC
* *
174359 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTTCAAAAA
1 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTTCAAAAA
174422 ATAAATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTC
66 AT--ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTC
*
174476 AAAAGAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT
174516 TCCTACACAG
Statistics
Matches: 242, Mismatches: 26, Indels: 13
0.86 0.09 0.05
Matches are distributed among these distances:
116 76 0.31
117 78 0.32
118 87 0.36
119 1 0.00
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (117 bp):
AAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAAGTTTTCAAAAA
ATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTC
Found at i:181212 original size:9 final size:9
Alignment explanation
Indices: 181198--181249 Score: 54
Period size: 8 Copynumber: 5.8 Consensus size: 9
181188 CTATGCTTGA
181198 AAAAAAATG
1 AAAAAAATG
181207 -AAAAAATG
1 AAAAAAATG
*
181215 -AAAAAATA
1 AAAAAAATG
*
181223 AAAAAAATA
1 AAAAAAATG
181232 AAAAAAAGTG
1 AAAAAAA-TG
181242 AATAAAAA
1 AA-AAAAA
181250 AAGAGGACTC
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
8 15 0.39
9 15 0.39
10 3 0.08
11 5 0.13
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.12
Consensus pattern (9 bp):
AAAAAAATG
Found at i:182380 original size:41 final size:41
Alignment explanation
Indices: 182254--182424 Score: 180
Period size: 41 Copynumber: 4.1 Consensus size: 41
182244 GATTGTCAAT
* * *
182254 GAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAG
1 GAGCAATTTA-TTTTCCAAAGTCGTGGAGCCTCTGCTTAGAG
* * * *
182296 GAGCAATTTACTTTCCAAAGTCGCGGTGCCTTTGCTTAGAG
1 GAGCAATTTATTTTCCAAAGTCGTGGAGCCTCTGCTTAGAG
* ** * *
182337 GAGCAATTTATTTTCCAAAGTCATTAAGCCTCTGATTATAG
1 GAGCAATTTATTTTCCAAAGTCGTGGAGCCTCTGCTTAGAG
* * *
182378 GAGCCATTTATGTTTCTCAAAGTCGTTGAGTCTCTGCTTAGAG
1 GAGCAATTTAT-TTTC-CAAAGTCGTGGAGCCTCTGCTTAGAG
182421 GAGC
1 GAGC
182425 TTTGATCAAA
Statistics
Matches: 107, Mismatches: 20, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
41 68 0.64
42 14 0.13
43 25 0.23
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.35
Consensus pattern (41 bp):
GAGCAATTTATTTTCCAAAGTCGTGGAGCCTCTGCTTAGAG
Found at i:182776 original size:20 final size:17
Alignment explanation
Indices: 182744--182791 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 17
182734 ATTTTATATG
*
182744 TATTTTTATTTATCTAGT
1 TATTATTATTTATCT-GT
182762 TATATATTCATTTATCTGT
1 TAT-TATT-ATTTATCTGT
182781 TATTATTATTT
1 TATTATTATTT
182792 TTTTATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 4 0.15
18 7 0.26
19 8 0.30
20 8 0.30
ACGTcount: A:0.25, C:0.06, G:0.04, T:0.65
Consensus pattern (17 bp):
TATTATTATTTATCTGT
Done.