Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 112 of 133
Found at i:21812567 original size:91 final size:92
Alignment explanation
Indices: 21812454--21812623 Score: 306
Period size: 91 Copynumber: 1.9 Consensus size: 92
21812444 AATAGTAGAT
* *
21812454 GGGTGCAGGTGGCAAAGCAAAAAATCATTTGCACTTATTGTCTAGAACCTTTTCTAGCACTCAGT
1 GGGTACAGGTGGCAAAGCAAAAAATCATCTGCACTTATTGTCTAGAACCTTTTCTAGCACTCAGT
21812519 GCACTTTGTAACATCACTTTAGGAGAC
66 GCACTTTGTAACATCACTTTAGGAGAC
*
21812546 GGGTACAGGT-GCAAAGCAAAAAATCATCTGCACTTATTGTCTAGAACCTTTTCTAGCACTTAGT
1 GGGTACAGGTGGCAAAGCAAAAAATCATCTGCACTTATTGTCTAGAACCTTTTCTAGCACTCAGT
21812610 GCACTTTGTAACAT
66 GCACTTTGTAACAT
21812624 TGCTTCTTCG
Statistics
Matches: 75, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
91 66 0.88
92 9 0.12
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (92 bp):
GGGTACAGGTGGCAAAGCAAAAAATCATCTGCACTTATTGTCTAGAACCTTTTCTAGCACTCAGT
GCACTTTGTAACATCACTTTAGGAGAC
Found at i:21821059 original size:2 final size:2
Alignment explanation
Indices: 21821052--21821088 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
21821042 CTTCAAAAAG
*
21821052 TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
21821089 GAAAAACACT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:21822581 original size:40 final size:40
Alignment explanation
Indices: 21822526--21822609 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
21822516 TCCTGAACTA
*
21822526 ATAAAGACCATCAGCATAAGTTTACCTGCAATGTAAGTAT
1 ATAAAGACCATCAGCACAAGTTTACCTGCAATGTAAGTAT
21822566 ATAAAGACCATCAGCACAAGTTTACCTGCAATGTAAGTAT
1 ATAAAGACCATCAGCACAAGTTTACCTGCAATGTAAGTAT
21822606 ATAA
1 ATAA
21822610 CCTAGCAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.42, C:0.18, G:0.14, T:0.26
Consensus pattern (40 bp):
ATAAAGACCATCAGCACAAGTTTACCTGCAATGTAAGTAT
Found at i:21826126 original size:202 final size:202
Alignment explanation
Indices: 21825770--21826206 Score: 480
Period size: 202 Copynumber: 2.2 Consensus size: 202
21825760 TTGAATTCTG
* * * * *
21825770 TTAAGTATCCAACTTAAAATCAATTGGCTATAAGTGGAGGGATCCAACCTGAATATAAGACTATA
1 TTAAGCATCTAACTTAAAACCAATTGACTATAAGTGGAGGGACCCAACCTGAATATAAGACTATA
* * * * *
21825835 AGAAATTAGATATTTATTAGATGTAGGATAACACCACATTAATAGGCCCCTATCATGTGTAAGTA
66 AGAAACTAGATATTCATTAGATGTAGGATAACACCACATTAATAGACCCCTATCATGAGTAAGCA
* * * *
21825900 GAGATAAAAAAAGTCTACCATGTGACAGATTT-GAAATGGACAACAG-AAAGAAATCTTGGCTAT
131 GAGATAAAAAAACTCTACCATGTGACAGATTTAGAAA-GGACAA-AGAAAAAAAATCCTAGCTAT
* * *
21825963 GATATCATG
194 AATACCATA
* *
21825972 TTAAGCATTTAACTTAAAACCAATTGAC-AGTAAGTGGAGAGG-CCCAA-CTTAAGTATAAGACT
1 TTAAGCATCTAACTTAAAACCAATTGACTA-TAAGTGGAG-GGACCCAACCTGAA-TATAAGACT
* *
21826034 ATATGAAACTAGATATTCATTAGATGTAGGATACCACCACATTAGCA-AGACCCC-ATCATGAGT
63 ATAAGAAACTAGATATTCATTAGATGTAGGATAACACCACATTA--ATAGACCCCTATCATGAGT
* * * *
21826097 -AGACAGAGATAGAAAAAACT-TATCATGTGATAGATTTAGAAAGGGCAATGAAAAAAAATCCTA
126 AAG-CAGAGATA-AAAAAACTCTACCATGTGACAGATTTAGAAAGGACAAAGAAAAAAAATCCTA
*
21826160 GCTCTAATACCATA
189 GCTATAATACCATA
21826174 TTAAGCATCTAACTTAAAACCAATT-AGCTATAA
1 TTAAGCATCTAACTTAAAACCAATTGA-CTATAA
21826207 ATGAAAGAAC
Statistics
Matches: 197, Mismatches: 27, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
201 9 0.05
202 167 0.85
203 20 0.10
204 1 0.01
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (202 bp):
TTAAGCATCTAACTTAAAACCAATTGACTATAAGTGGAGGGACCCAACCTGAATATAAGACTATA
AGAAACTAGATATTCATTAGATGTAGGATAACACCACATTAATAGACCCCTATCATGAGTAAGCA
GAGATAAAAAAACTCTACCATGTGACAGATTTAGAAAGGACAAAGAAAAAAAATCCTAGCTATAA
TACCATA
Found at i:21826361 original size:212 final size:209
Alignment explanation
Indices: 21826111--21826532 Score: 607
Period size: 212 Copynumber: 2.0 Consensus size: 209
21826101 AGAGATAGAA
*
21826111 AAAACTTATCATGTGATAGATTTAGAAAGGGCAATGAAAAAAAATCCTAGCTCTAATACCATATT
1 AAAACTTATCATGTGATAGATTTAGAAAGGGCAATGAAAAAAAATACTAGCTCTAATACCATATT
* *
21826176 AAGCA-TCTAACTTAAAACCAATTAGCTATAAATGAAAGAACTTGTTTGGGGCATTTAATGGTCG
66 AAGCATTC-AACTTAAAACCAATTAGCTATAAATG--AGAACTTGTTAGGGGCATTTAATGGTCA
* * *
21826240 AAAGGGCATGGTGGTCTTTTTTC-TTCTTAAAAGCATTCAATAGACAATTAGGGGTATTTTTGTC
128 AAAGGGCATGGTGGT-TTTTTTCTTTCTTAAAAGCATTCAACAGACAACTA-GGATATTTTTGTC
21826304 ATTTATG-CTGACTTGACAT
191 ATTTATGTC-GACTTGACAT
* * * *
21826323 AAAACTTATCATGTGATAGATTTAGAAAGGGTAATGAAAAGAAATATTGGCTCTAATACCATATT
1 AAAACTTATCATGTGATAGATTTAGAAAGGGCAATGAAAAAAAATACTAGCTCTAATACCATATT
** * * *
21826388 AAGCATTCAGTTTAGAACCAATTGGCTATAAGTGAGAACTTGTTAGGGGCATTTAATGGTCAAAA
66 AAGCATTCAACTTAAAACCAATTAGCTATAAATGAGAACTTGTTAGGGGCATTTAATGGTCAAAA
** *
21826453 GTTCATGGTGGTTTTTTTCTTTCTTAAAAGCATTCAGCAGACAACTAGGATATTTTTGTCATTTA
131 GGGCATGGTGGTTTTTTTCTTTCTTAAAAGCATTCAACAGACAACTAGGATATTTTTGTCATTTA
21826518 TGTCGACTTGACAT
196 TGTCGACTTGACAT
21826532 A
1 A
21826533 TGAGATTGGT
Statistics
Matches: 189, Mismatches: 18, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
209 37 0.20
210 64 0.34
212 86 0.46
213 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (209 bp):
AAAACTTATCATGTGATAGATTTAGAAAGGGCAATGAAAAAAAATACTAGCTCTAATACCATATT
AAGCATTCAACTTAAAACCAATTAGCTATAAATGAGAACTTGTTAGGGGCATTTAATGGTCAAAA
GGGCATGGTGGTTTTTTTCTTTCTTAAAAGCATTCAACAGACAACTAGGATATTTTTGTCATTTA
TGTCGACTTGACAT
Found at i:21841011 original size:2 final size:2
Alignment explanation
Indices: 21840998--21841038 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
21840988 TGGTTCATAG
*
21840998 AT AT AG AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
21841039 AAAGATATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (2 bp):
AT
Found at i:21844563 original size:36 final size:36
Alignment explanation
Indices: 21844523--21844685 Score: 119
Period size: 36 Copynumber: 4.4 Consensus size: 36
21844513 ATAAATCCTG
** * *
21844523 CAAATCAAAATGTATGATTTTTTTTAATACATTTGA
1 CAAATCAAAATGTATGACATCTTTTAATAGATTTGA
* * * * *
21844559 CAAATCAACATATGTGACATCTTTTAATGGATTTAA
1 CAAATCAAAATGTATGACATCTTTTAATAGATTTGA
* * * * * *
21844595 TAAATCAAAATGTCTTATATGATATTTTTTTAATATACTTGG
1 CAAATCAAAATG-----TATGACA-TCTTTTAATAGATTTGA
*
21844637 TAAATCAAAATGTATGACATCTTTTAATAGATTTGA
1 CAAATCAAAATGTATGACATCTTTTAATAGATTTGA
*
21844673 CAAATCAAGATGT
1 CAAATCAAAATGT
21844686 GTTACTATAT
Statistics
Matches: 94, Mismatches: 27, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
36 60 0.64
37 6 0.06
41 5 0.05
42 23 0.24
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.40
Consensus pattern (36 bp):
CAAATCAAAATGTATGACATCTTTTAATAGATTTGA
Found at i:21844642 original size:78 final size:77
Alignment explanation
Indices: 21844535--21844685 Score: 194
Period size: 78 Copynumber: 1.9 Consensus size: 77
21844525 AATCAAAATG
* * * * *
21844535 TATGATTTTTTTTAATACATTTGACAAATCAACATATGTGACATCTTTTAATGGATTTAATAAAT
1 TATGATTTTTTTTAATACACTTGACAAATCAAAATATATGACATCTTTTAATAGATTTAACAAAT
21844600 CAAAATGTCTTA
66 CAAAATGTCTTA
* ** * *
21844612 TATGATATTTTTTTAATATACTTGGTAAATCAAAATGTATGACATCTTTTAATAGATTTGACAAA
1 TATGAT-TTTTTTTAATACACTTGACAAATCAAAATATATGACATCTTTTAATAGATTTAACAAA
*
21844677 TCAAGATGT
65 TCAAAATGT
21844686 GTTACTATAT
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
77 6 0.10
78 56 0.90
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (77 bp):
TATGATTTTTTTTAATACACTTGACAAATCAAAATATATGACATCTTTTAATAGATTTAACAAAT
CAAAATGTCTTA
Found at i:21850325 original size:15 final size:16
Alignment explanation
Indices: 21850305--21850337 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
21850295 AATAATAAAA
*
21850305 TAAAAAGATTAT-TTT
1 TAAAAAAATTATATTT
21850320 TAAAAAAATTATATTT
1 TAAAAAAATTATATTT
21850336 TA
1 TA
21850338 TTTATTCAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
TAAAAAAATTATATTT
Found at i:21853202 original size:30 final size:30
Alignment explanation
Indices: 21853147--21853212 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
21853137 CTAATATGCT
*
21853147 CTTAACCTTTAATTTGTATTCAAATAAACC
1 CTTAACCTTTAATTTGTACTCAAATAAACC
* * *
21853177 CTTAATCTTTAATTTGTAC-CTAAATAAGCT
1 CTTAACCTTTAATTTGTACTC-AAATAAACC
21853207 CTTAAC
1 CTTAAC
21853213 ATAAATTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 1 0.03
30 29 0.97
ACGTcount: A:0.35, C:0.20, G:0.05, T:0.41
Consensus pattern (30 bp):
CTTAACCTTTAATTTGTACTCAAATAAACC
Found at i:21854770 original size:14 final size:14
Alignment explanation
Indices: 21854753--21854784 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
21854743 ATTAAAATTA
21854753 AAATAATATTTAAT
1 AAATAATATTTAAT
21854767 AAATAATATTTAAT
1 AAATAATATTTAAT
21854781 AAAT
1 AAAT
21854785 TTGATATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AAATAATATTTAAT
Found at i:21864970 original size:13 final size:13
Alignment explanation
Indices: 21864952--21864976 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21864942 TTTAATATTT
21864952 GTAATATCACATA
1 GTAATATCACATA
21864965 GTAATATCACAT
1 GTAATATCACAT
21864977 GATATATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (13 bp):
GTAATATCACATA
Found at i:21865484 original size:19 final size:18
Alignment explanation
Indices: 21865440--21865475 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
21865430 AATATTTTAT
21865440 TAATTAAAATAATAAAAA
1 TAATTAAAATAATAAAAA
21865458 TATATTAAAAT-ATAAAAA
1 TA-ATTAAAATAATAAAAA
21865476 CTCAATTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
TAATTAAAATAATAAAAA
Found at i:21874389 original size:16 final size:16
Alignment explanation
Indices: 21874345--21874391 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
21874335 CCACACACTG
*
21874345 AATTTTTTATTATATT
1 AATTTTATATTATATT
21874361 --TTTTATAATTTATATT
1 AATTTTAT-A-TTATATT
21874377 AATTTTATATTATAT
1 AATTTTATATTATAT
21874392 GTAAATAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 5 0.19
15 1 0.04
16 13 0.50
17 1 0.04
18 6 0.23
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (16 bp):
AATTTTATATTATATT
Found at i:21874664 original size:18 final size:18
Alignment explanation
Indices: 21874638--21874675 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
21874628 CATGAAAGGT
*
21874638 TTTAGTATAAAACTAAAA
1 TTTAATATAAAACTAAAA
21874656 TTTAATATAAAACTAAAA
1 TTTAATATAAAACTAAAA
21874674 TT
1 TT
21874676 ACATACAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (18 bp):
TTTAATATAAAACTAAAA
Found at i:21888040 original size:86 final size:85
Alignment explanation
Indices: 21887882--21888043 Score: 191
Period size: 86 Copynumber: 1.9 Consensus size: 85
21887872 GTTGATTATG
* ** * *
21887882 AACCTTTCTGTTGCATGAACATGCTATGTGGAAGGCTTATATGGTAGTTAGACCTCAAATTTTCT
1 AACCTTTCTGTTACATGAACACACTATGTGGAAGGCTTATATGATAGTTAGACCTCAAATTTCCT
*
21887947 CATATTAAGCTCTAATTGTA
66 CACATTAAGCTCTAATTGTA
* * * * * *
21887967 AACCTTTCTGTTACATGAGCACACTGTGTCGTAAGGCTTCTATGATAGTT-GAACCTTAAGTTTC
1 AACCTTTCTGTTACATGAACACACTATGT-GGAAGGCTTATATGATAGTTAG-ACCTCAAATTTC
21888031 CTCACATTAAGCT
64 CTCACATTAAGCT
21888044 ATAGTGGCTG
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
85 25 0.40
86 38 0.60
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.36
Consensus pattern (85 bp):
AACCTTTCTGTTACATGAACACACTATGTGGAAGGCTTATATGATAGTTAGACCTCAAATTTCCT
CACATTAAGCTCTAATTGTA
Found at i:21894040 original size:32 final size:32
Alignment explanation
Indices: 21893975--21894077 Score: 80
Period size: 32 Copynumber: 3.0 Consensus size: 32
21893965 AAATTTGAGG
* * *
21893975 ATTTGTATATTTATATAATATAAAATGTTAAA
1 ATTTATATATTTATATAATATAAAATATAAAA
***
21894007 ATTTATATATTTATATAATATTTTATATAAAA
1 ATTTATATATTTATATAATATAAAATATAAAA
*
21894039 ATTACATATCATAATTCATATAAATATAAAAATATAAAA
1 ATT---TAT-AT-ATTTATAT-AATAT-AAAATATAAAA
21894078 TAATATTTTT
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
32 29 0.54
35 3 0.06
36 2 0.04
37 7 0.13
38 5 0.09
39 8 0.15
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (32 bp):
ATTTATATATTTATATAATATAAAATATAAAA
Found at i:21899835 original size:32 final size:32
Alignment explanation
Indices: 21899794--21899854 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
21899784 CTTGACTAAA
21899794 TATATATTGGATTCAATTGAAAATGAGAAGTT
1 TATATATTGGATTCAATTGAAAATGAGAAGTT
21899826 TATATATTGGATTCAATTGAAAATGAGAA
1 TATATATTGGATTCAATTGAAAATGAGAA
21899855 AATGGTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.43, C:0.03, G:0.18, T:0.36
Consensus pattern (32 bp):
TATATATTGGATTCAATTGAAAATGAGAAGTT
Found at i:21900875 original size:23 final size:22
Alignment explanation
Indices: 21900849--21900892 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
21900839 ATAATTTTTG
*
21900849 TTTAATATTAATTAAAATTAAAA
1 TTTAATATT-ATAAAAATTAAAA
21900872 TTTAATATTATAAAAATTAAA
1 TTTAATATTATAAAAATTAAA
21900893 CGAATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TTTAATATTATAAAAATTAAAA
Found at i:21901924 original size:54 final size:54
Alignment explanation
Indices: 21901849--21902041 Score: 188
Period size: 54 Copynumber: 3.6 Consensus size: 54
21901839 CGACCCGGAT
* * * * * * * *
21901849 CGGAATTTGAATCTGGATATGGCCGAAAACCTGAATTTGAGCGGCCGCCTCCTC
1 CGGAATTTGGATCTGGGTATGGCCGGAGACCAGAATTTGAGCAGCCACCTCCAC
* * ** * *
21901903 CGGAGTTTGGATCTGGGTATGGCCGGAGACCCGAATACGAACAGCCACATCCAC
1 CGGAATTTGGATCTGGGTATGGCCGGAGACCAGAATTTGAGCAGCCACCTCCAC
* ** * * * *
21901957 CGGAATTCGGATCTGATTATGGACGGAGACCAGAATTTGAGCAGCCTCCGCCGC
1 CGGAATTTGGATCTGGGTATGGCCGGAGACCAGAATTTGAGCAGCCACCTCCAC
*
21902011 CTGAATTTGGATCTGGGTATGGCCGGAGACC
1 CGGAATTTGGATCTGGGTATGGCCGGAGACC
21902042 CGAGTATGGG
Statistics
Matches: 108, Mismatches: 31, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
54 108 1.00
ACGTcount: A:0.24, C:0.25, G:0.30, T:0.21
Consensus pattern (54 bp):
CGGAATTTGGATCTGGGTATGGCCGGAGACCAGAATTTGAGCAGCCACCTCCAC
Found at i:21902094 original size:51 final size:51
Alignment explanation
Indices: 21902023--21902269 Score: 289
Period size: 51 Copynumber: 4.8 Consensus size: 51
21902013 GAATTTGGAT
* * * * * *
21902023 CTGGGTATGGCCGGAGACCCGAGTATGGGGAAGACGGATCCGACTATGGAA
1 CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGGATCCGAGTACGGAA
*
21902074 CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGGATCAGAGTACGGAA
1 CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGGATCCGAGTACGGAA
* * * *
21902125 CTGGATATGGCAGGAAACCCGAGTACGGGAAACATGGATCTGAGTACGGAA
1 CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGGATCCGAGTACGGAA
* * *
21902176 CTGGATATGGCGGGAAACCTGAGTATGGAGAACA-GGAATCCGAGTACGGAA
1 CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGG-ATCCGAGTACGGAA
* * ** * * *
21902227 CTGAATATGGCAGAAAACAAGAGTATGGAGAATATGGATCCGA
1 CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGGATCCGA
21902270 ATATGGGAGG
Statistics
Matches: 171, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
50 2 0.01
51 167 0.98
52 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.34, T:0.16
Consensus pattern (51 bp):
CTGGATATGGCAGGAAACCCGAGTATGGGGAACACGGATCCGAGTACGGAA
Found at i:21906633 original size:20 final size:22
Alignment explanation
Indices: 21906594--21906633 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
21906584 ATAGTTTTAA
*
21906594 CTTATATCTTATTAAGTTGAAG
1 CTTATATCTAATTAAGTTGAAG
21906616 CTTA-ATCTAATT-AGTTGA
1 CTTATATCTAATTAAGTTGA
21906634 TATAATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 7 0.41
22 4 0.24
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (22 bp):
CTTATATCTAATTAAGTTGAAG
Found at i:21909858 original size:20 final size:20
Alignment explanation
Indices: 21909835--21909875 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
21909825 TGATAAAGTT
*
21909835 TAATAAAA-ATTAATAATATA
1 TAATAAAATA-TAAAAATATA
21909855 TAATAAAATATAAAAATATA
1 TAATAAAATATAAAAATATA
21909875 T
1 T
21909876 TATTTATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 18 0.95
21 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (20 bp):
TAATAAAATATAAAAATATA
Found at i:21910671 original size:3 final size:3
Alignment explanation
Indices: 21910665--21910692 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
21910655 TTTTTTTCGT
21910665 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA A
21910693 CGAAATTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:21933218 original size:12 final size:10
Alignment explanation
Indices: 21933178--21933212 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
21933168 ATAAAAATAA
*
21933178 TTATATTATCT
1 TTATATT-TTT
21933189 TTATATTTTT
1 TTATATTTTT
21933199 TTATATTTTT
1 TTATATTTTT
21933209 TTAT
1 TTAT
21933213 TCATTTATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 16 0.70
11 7 0.30
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (10 bp):
TTATATTTTT
Found at i:21933219 original size:18 final size:18
Alignment explanation
Indices: 21933198--21933236 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
21933188 TTTATATTTT
* *
21933198 TTTATATTTTTTTATTCA
1 TTTATATCTTTTTATACA
21933216 TTTATATCTTTTTATACA
1 TTTATATCTTTTTATACA
21933234 TTT
1 TTT
21933237 CAATTATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATATCTTTTTATACA
Found at i:21934659 original size:23 final size:21
Alignment explanation
Indices: 21934631--21934695 Score: 58
Period size: 24 Copynumber: 2.8 Consensus size: 21
21934621 GGATTGAAAT
21934631 ATTTAAAAATAAAAAATTATA
1 ATTTAAAAATAAAAAATTATA
* *
21934652 GATATTAAAATTTAAAAGAGATTGTA
1 -AT-TTAAAA-ATAAAA-A-ATTATA
21934678 ATTTAAAAATAAATAAAT
1 ATTTAAAAATAAA-AAAT
21934696 AAATTACAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
22 4 0.11
23 11 0.31
24 12 0.34
25 3 0.09
26 5 0.14
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (21 bp):
ATTTAAAAATAAAAAATTATA
Found at i:21937897 original size:149 final size:153
Alignment explanation
Indices: 21937632--21937908 Score: 388
Period size: 152 Copynumber: 1.8 Consensus size: 153
21937622 ATAAATGATG
* * * *
21937632 TAAATATTTTTATAAAATTTTAAAAATAATAAATTTATCTTTAAATTTTTAATATTTTTTATTTA
1 TAAATATCTTTATAAAATTTTAAAAATAACAAATTTACCTATAAATTTTTAATATTTTTTATTTA
*
21937697 TATAATAAAGATTATTTTTCATTAAATATATAACTTTTATTAGTTAATTATTTAAA-TTAAATTC
66 TATAATAAAGATTATTTGTCATTAAATATATAACTTTTATTAGTTAATTATTTAAATTTAAATTC
21937761 AAAAGTGTTAAAAATGAATAACA
131 AAAAGTGTTAAAAATGAATAACA
*
21937784 TAAATATCTTTAT-GAATTTTAAAAAATAACAAATTTACCTATAAATTTTTAATATTTATTTATT
1 TAAATATCTTTATAAAATTTT-AAAAATAACAAATTTACCTATAAATTTTTAATATTT-TTTATT
* ** *
21937848 TA-AT-A-AAA-ATTATTTGTCATTAAATATTTAGTTTTTATTTA-TTAGTTATTTAAATTTAAA
64 TATATAATAAAGATTATTTGTCATTAAATATATAACTTTTA-TTAGTTAATTATTTAAATTTAAA
21937908 T
128 T
21937909 CAATTAAAAA
Statistics
Matches: 111, Mismatches: 10, Indels: 10
0.85 0.08 0.08
Matches are distributed among these distances:
149 37 0.33
150 12 0.11
151 7 0.06
152 47 0.42
153 8 0.07
ACGTcount: A:0.44, C:0.04, G:0.03, T:0.49
Consensus pattern (153 bp):
TAAATATCTTTATAAAATTTTAAAAATAACAAATTTACCTATAAATTTTTAATATTTTTTATTTA
TATAATAAAGATTATTTGTCATTAAATATATAACTTTTATTAGTTAATTATTTAAATTTAAATTC
AAAAGTGTTAAAAATGAATAACA
Found at i:21938938 original size:4 final size:4
Alignment explanation
Indices: 21938921--21938973 Score: 54
Period size: 4 Copynumber: 13.5 Consensus size: 4
21938911 GAATGCATTG
* * ** *
21938921 TTTA TTTA TGTA TTTA TTTA ATT- TTTA GGTA TTTA TTTA TTTA TTAA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
21938968 TTTA TT
1 TTTA TT
21938974 ATAAAATTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
3 2 0.05
4 36 0.95
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:21939071 original size:16 final size:16
Alignment explanation
Indices: 21939035--21939069 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
21939025 ATTTTTGTAT
21939035 TAAATAATAATTTTAA
1 TAAATAATAATTTTAA
*
21939051 TAAATAA-AATTTTAG
1 TAAATAATAATTTTAA
21939066 TAAA
1 TAAA
21939070 ATTATTTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.61
16 7 0.39
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (16 bp):
TAAATAATAATTTTAA
Found at i:21939183 original size:40 final size:42
Alignment explanation
Indices: 21939114--21939200 Score: 101
Period size: 40 Copynumber: 2.1 Consensus size: 42
21939104 TTTTATTTAT
*
21939114 TTATATGATTATTTTATTTTAAAAAATTAT-T-ATTATGTAA
1 TTATATGATTATTTTATTTTAAAAAATTATGTAATTATATAA
**
21939154 TTATATGATTA-TTTATTAATT-AATTATTATGTAATTATATAA
1 TTATATGATTATTTTATT--TTAAAAAATTATGTAATTATATAA
21939196 TTATA
1 TTATA
21939201 CTTATTTATA
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
39 6 0.15
40 18 0.45
41 3 0.08
42 13 0.32
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (42 bp):
TTATATGATTATTTTATTTTAAAAAATTATGTAATTATATAA
Found at i:21939715 original size:11 final size:11
Alignment explanation
Indices: 21939689--21939727 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
21939679 ATTAGATTAA
21939689 ATAATATTATTTT
1 ATAATA-TA-TTT
21939702 ATAATATATTT
1 ATAATATATTT
*
21939713 ATAATATATAT
1 ATAATATATTT
21939724 ATAA
1 ATAA
21939728 AGATTATGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 17 0.68
12 2 0.08
13 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATAATATATTT
Found at i:21939897 original size:24 final size:23
Alignment explanation
Indices: 21939870--21939915 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
21939860 TCTATTTTAG
21939870 AAAT-ATTGAATTATTTTATATAAA
1 AAATAATT-AATT-TTTTATATAAA
*
21939894 AAATAATTAATTTTTTTTATAA
1 AAATAATTAATTTTTTATATAA
21939916 TCTTATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 8 0.40
25 3 0.15
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
AAATAATTAATTTTTTATATAAA
Found at i:21944506 original size:2 final size:2
Alignment explanation
Indices: 21944499--21944524 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21944489 GGAAATATGC
21944499 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
21944525 CAGCTGATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21948638 original size:22 final size:21
Alignment explanation
Indices: 21948612--21948670 Score: 57
Period size: 22 Copynumber: 2.7 Consensus size: 21
21948602 TTTTAATAAA
21948612 TAAATAAAATAATTAATTTTAT
1 TAAATAAAATAA-TAATTTTAT
* *
21948634 TAAATTAAATCATAATTTT-T
1 TAAATAAAATAATAATTTTAT
*
21948654 TATTATAAAATCAATAA
1 TA-AATAAAAT-AATAA
21948671 ATAAAATAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
20 3 0.10
21 13 0.43
22 14 0.47
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (21 bp):
TAAATAAAATAATAATTTTAT
Found at i:21950314 original size:42 final size:42
Alignment explanation
Indices: 21950246--21950340 Score: 120
Period size: 42 Copynumber: 2.3 Consensus size: 42
21950236 TATTATGCCT
* * * *
21950246 GAACTCGTTTAATAGTACTTCGTTAAAATTTGATTCAAATTC
1 GAACTCGTTTAATAATACTTCATTAAAACTTGATTAAAATTC
*
21950288 GAACTCGTTTAATAATA-TATCATTAAAACTTGATTAAAATTT
1 GAACTCGTTTAATAATACT-TCATTAAAACTTGATTAAAATTC
*
21950330 GAACTTGTTTA
1 GAACTCGTTTA
21950341 TTTAATTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.02
42 45 0.98
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (42 bp):
GAACTCGTTTAATAATACTTCATTAAAACTTGATTAAAATTC
Found at i:21950738 original size:18 final size:19
Alignment explanation
Indices: 21950691--21950739 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
21950681 TCAAGGGTCC
*
21950691 ATTATATTATTTTATAAAA
1 ATTAAATTATTTTATAAAA
* *
21950710 GTTAAAATATTTT-TAAAA
1 ATTAAATTATTTTATAAAA
*
21950728 ATTGAATTATTT
1 ATTAAATTATTT
21950740 CATTTTTTAA
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (19 bp):
ATTAAATTATTTTATAAAA
Found at i:21952080 original size:20 final size:20
Alignment explanation
Indices: 21952043--21952094 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 20
21952033 TTTTTAAGAC
21952043 AAAATTTTAAAATAATTATTT
1 AAAA-TTTAAAATAATTATTT
* *
21952064 AAAATTTAATATTATTATTT
1 AAAATTTAAAATAATTATTT
21952084 AAAATTTAAAA
1 AAAATTTAAAA
21952095 CTATTTTATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 24 0.86
21 4 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAATTTAAAATAATTATTT
Found at i:21954064 original size:14 final size:14
Alignment explanation
Indices: 21954045--21954107 Score: 58
Period size: 14 Copynumber: 4.4 Consensus size: 14
21954035 TTTAATTTTT
21954045 TATTTATAAATATA
1 TATTTATAAATATA
21954059 TATTTATATAATA-A
1 TATTTATA-AATATA
*
21954073 TATTTTTAAATATTTA
1 TATTTATAAATA--TA
*
21954089 TATTTA-AAAAATAA
1 TATTTATAAATAT-A
21954103 TATTT
1 TATTT
21954108 TATTAATTCG
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
13 5 0.12
14 22 0.54
15 8 0.20
16 6 0.15
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTTATAAATATA
Found at i:21954093 original size:30 final size:28
Alignment explanation
Indices: 21954045--21954108 Score: 83
Period size: 30 Copynumber: 2.2 Consensus size: 28
21954035 TTTAATTTTT
* * *
21954045 TATTTATAAATATATATTTATATAATAA
1 TATTTTTAAATATATATTTAAAAAATAA
21954073 TATTTTTAAATATTTATATTTAAAAAATAA
1 TATTTTTAAATA--TATATTTAAAAAATAA
21954103 TATTTT
1 TATTTT
21954109 ATTAATTCGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 11 0.35
30 20 0.65
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
TATTTTTAAATATATATTTAAAAAATAA
Found at i:21962624 original size:14 final size:13
Alignment explanation
Indices: 21962591--21962624 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
21962581 TTTGTTCATA
21962591 TTAAATTTTGAAT
1 TTAAATTTTGAAT
*
21962604 GTAAATTTTGAAGT
1 TTAAATTTTGAA-T
21962618 TTAAATT
1 TTAAATT
21962625 ATTTAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (13 bp):
TTAAATTTTGAAT
Found at i:21962706 original size:3 final size:3
Alignment explanation
Indices: 21962694--21962736 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
21962684 TATTTATTTT
21962694 TAA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
21962737 GCATGAAGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:21971661 original size:13 final size:13
Alignment explanation
Indices: 21971639--21971670 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
21971629 GTTTTAATTA
21971639 TATTAT-TTATAT
1 TATTATATTATAT
21971651 TATTATATTATAT
1 TATTATATTATAT
21971664 TATTATA
1 TATTATA
21971671 AGTTTTATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTATAT
Found at i:21971678 original size:22 final size:22
Alignment explanation
Indices: 21971629--21971678 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 22
21971619 TTTATGTTTT
21971629 GTTTTA-ATTATATTATTTATA
1 GTTTTATATTATATTATTTATA
21971650 -TTATTATATTATATTA-TTATAA
1 GTT-TTATATTATATTATTTAT-A
21971672 GTTTTAT
1 GTTTTAT
21971679 CTTCTTAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
20 2 0.08
21 7 0.28
22 14 0.56
23 2 0.08
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (22 bp):
GTTTTATATTATATTATTTATA
Found at i:21971732 original size:25 final size:26
Alignment explanation
Indices: 21971686--21971734 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
21971676 TATCTTCTTA
*
21971686 GATTTTATTATTTTTTTGTTATCTCT
1 GATTTTATTATTTTTATGTTATCTCT
21971712 GATTTT-TTATTATTTAT-TTATCT
1 GATTTTATTATT-TTTATGTTATCT
21971735 TTAAGTTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.18, C:0.06, G:0.06, T:0.69
Consensus pattern (26 bp):
GATTTTATTATTTTTATGTTATCTCT
Found at i:21972232 original size:19 final size:19
Alignment explanation
Indices: 21972210--21972256 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
21972200 CAGATTTCAG
21972210 TGAATTTTTA-AGCGTCGGT
1 TGAATTTTTAGA-CGTCGGT
*
21972229 TGAATTTTTTGACGTCGGT
1 TGAATTTTTAGACGTCGGT
*
21972248 TAAATTTTT
1 TGAATTTTT
21972257 TAGCAAGCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 24 0.96
20 1 0.04
ACGTcount: A:0.21, C:0.09, G:0.21, T:0.49
Consensus pattern (19 bp):
TGAATTTTTAGACGTCGGT
Found at i:21972863 original size:25 final size:23
Alignment explanation
Indices: 21972806--21972864 Score: 59
Period size: 25 Copynumber: 2.4 Consensus size: 23
21972796 TATTTAATGA
21972806 TAAATTTTTTAAAAATTTTAAATAG
1 TAAATTTTTTAAAAATTTT--ATAG
21972831 TAAA-TTTTTATAAAATTTT-TAGG
1 TAAATTTTTTA-AAAATTTTATA-G
21972854 TGAAATTTTTT
1 T-AAATTTTTT
21972865 TTTCAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
22 2 0.07
23 2 0.07
24 9 0.30
25 17 0.57
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.53
Consensus pattern (23 bp):
TAAATTTTTTAAAAATTTTATAG
Found at i:21973282 original size:14 final size:14
Alignment explanation
Indices: 21973263--21973297 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
21973253 ATTTTCACAA
* *
21973263 AAAAATCCAAAATT
1 AAAAATACAAAAAT
21973277 AAAAATACAAAAAT
1 AAAAATACAAAAAT
21973291 AAAAATA
1 AAAAATA
21973298 ATTGAGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.74, C:0.09, G:0.00, T:0.17
Consensus pattern (14 bp):
AAAAATACAAAAAT
Found at i:21985253 original size:33 final size:33
Alignment explanation
Indices: 21985177--21985263 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 33
21985167 TTTTAGTTTC
* * *
21985177 TTTTTAACTTTAAATAAAATTTGAATTCAAATTA
1 TTTTTAAATTTAAAT-CATTTTGAATTCAAATTA
* *
21985211 TTTTT-AATTTAAATCATTTTGAATTCAATTTT
1 TTTTTAAATTTAAATCATTTTGAATTCAAATTA
*
21985243 TTTTTAAATTTAAACCATTTT
1 TTTTTAAATTTAAATCATTTT
21985264 ATACTAAGAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
32 19 0.41
33 22 0.48
34 5 0.11
ACGTcount: A:0.37, C:0.07, G:0.02, T:0.54
Consensus pattern (33 bp):
TTTTTAAATTTAAATCATTTTGAATTCAAATTA
Found at i:21986497 original size:21 final size:21
Alignment explanation
Indices: 21986442--21986491 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
21986432 TTGGTTAAGG
*
21986442 TAACGATAAAATTAATTATTA
1 TAACGATAAAATTAAATATTA
21986463 T-ACTGATAAAATTAAATATTA
1 TAAC-GATAAAATTAAATATTA
21986484 TAACGATA
1 TAACGATA
21986492 TGATTATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
20 2 0.08
21 22 0.85
22 2 0.08
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (21 bp):
TAACGATAAAATTAAATATTA
Found at i:21991386 original size:21 final size:21
Alignment explanation
Indices: 21991345--21991406 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 21
21991335 GAGACATTCA
* *
21991345 AATTAGTAATAAAAATTATTAT
1 AATTA-TATTAAAAAATATTAT
21991367 AATTATGATTAAAAAAATTATTAT
1 AATTAT-ATT-AAAAAA-TATTAT
21991391 AATTATATTAAAAAAT
1 AATTATATTAAAAAAT
21991407 TATAAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
21 2 0.06
22 13 0.37
23 8 0.23
24 12 0.34
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
AATTATATTAAAAAATATTAT
Found at i:21991387 original size:24 final size:22
Alignment explanation
Indices: 21991355--21991409 Score: 92
Period size: 24 Copynumber: 2.4 Consensus size: 22
21991345 AATTAGTAAT
21991355 AAAAATTATTATAATTATGATTAA
1 AAAAATTATTATAATTAT-ATT-A
21991379 AAAAATTATTATAATTATATTA
1 AAAAATTATTATAATTATATTA
21991401 AAAAATTAT
1 AAAAATTAT
21991410 AAAAATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 10 0.32
23 3 0.10
24 18 0.58
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAAAATTATTATAATTATATTA
Found at i:21998572 original size:21 final size:22
Alignment explanation
Indices: 21998546--21998586 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
21998536 CTTTAATTTG
21998546 ATTAATAAAAATA-AAATAACA
1 ATTAATAAAAATATAAATAACA
**
21998567 ATTAATTTAAATATAAATAA
1 ATTAATAAAAATATAAATAA
21998587 TTTGATTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (22 bp):
ATTAATAAAAATATAAATAACA
Found at i:22000241 original size:44 final size:44
Alignment explanation
Indices: 22000178--22000265 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
22000168 TATACCTAAG
22000178 ATTGAACTTATAAATCACATACTTTTCACCCTATCAATAAGCTC
1 ATTGAACTTATAAATCACATACTTTTCACCCTATCAATAAGCTC
*
22000222 ATTGAACTTATAAATCACATACTTTTCACTCTATCAATAAGCTC
1 ATTGAACTTATAAATCACATACTTTTCACCCTATCAATAAGCTC
22000266 CTTAAGGTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.35
Consensus pattern (44 bp):
ATTGAACTTATAAATCACATACTTTTCACCCTATCAATAAGCTC
Found at i:22004967 original size:22 final size:22
Alignment explanation
Indices: 22004941--22004987 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
22004931 CAAGACAAAT
*
22004941 ATAAACTAATAAAAATTAACCA
1 ATAAACTAATAAAAATTAACAA
22004963 ATAAACTAATAAAAATTAACAA
1 ATAAACTAATAAAAATTAACAA
22004985 ATA
1 ATA
22004988 CTCAATCATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (22 bp):
ATAAACTAATAAAAATTAACAA
Found at i:22005716 original size:20 final size:20
Alignment explanation
Indices: 22005677--22005716 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22005667 ATGACCTCTG
**
22005677 CAAAATAATAGGCATGATAT
1 CAAAATAATAGGCACAATAT
22005697 CAAAATAATAGGCACAATAT
1 CAAAATAATAGGCACAATAT
22005717 TGGATGTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.23
Consensus pattern (20 bp):
CAAAATAATAGGCACAATAT
Found at i:22009089 original size:13 final size:13
Alignment explanation
Indices: 22009071--22009098 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
22009061 CATCAAAGTT
22009071 TTTTTTTAATTTA
1 TTTTTTTAATTTA
22009084 TTTTTTTAATTTA
1 TTTTTTTAATTTA
22009097 TT
1 TT
22009099 GTGATAAGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTTAATTTA
Found at i:22011812 original size:39 final size:40
Alignment explanation
Indices: 22011735--22011813 Score: 99
Period size: 40 Copynumber: 2.0 Consensus size: 40
22011725 CGAGAAGAAA
* * **
22011735 AATGGTGATGTTAGTTATTAATCTATTGATCAGGAATACT
1 AATGGTGATATCAGTTACCAATCTATTGATCAGGAATACT
22011775 AATGGTGATATCAGTTACCAAT-TATTGA-CTAGGAATACT
1 AATGGTGATATCAGTTACCAATCTATTGATC-AGGAATACT
22011814 TTTGTGGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.03
39 15 0.44
40 18 0.53
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (40 bp):
AATGGTGATATCAGTTACCAATCTATTGATCAGGAATACT
Found at i:22023962 original size:25 final size:25
Alignment explanation
Indices: 22023934--22024000 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 25
22023924 AAACAGATAG
*
22023934 TTAAGTCTATTCAAAATGAATAATT
1 TTAAGTCTATTCAAAATAAATAATT
*
22023959 TTAA-T-TGTTCAAAAATAAATAATT
1 TTAAGTCTATTC-AAAATAAATAATT
*
22023983 TT-TGTCTATTCAAAATAA
1 TTAAGTCTATTCAAAATAA
22024001 TCAATCATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
23 4 0.11
24 23 0.66
25 8 0.23
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (25 bp):
TTAAGTCTATTCAAAATAAATAATT
Found at i:22030726 original size:2 final size:2
Alignment explanation
Indices: 22030719--22030745 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22030709 GTGTGATATT
22030719 GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA G
22030746 TGACGATAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22035938 original size:22 final size:24
Alignment explanation
Indices: 22035913--22035962 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
22035903 GTTTAATTAA
22035913 GAGTCT-CTAA-AATAATATA-TTC
1 GAGTCTACTAACAA-AATATAGTTC
22035935 GAGTCTACTAACTAAAATATAGTTC
1 GAGTCTACTAAC-AAAATATAGTTC
22035960 GAG
1 GAG
22035963 AGTTCGATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 6 0.25
23 4 0.17
24 6 0.25
25 8 0.33
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.32
Consensus pattern (24 bp):
GAGTCTACTAACAAAATATAGTTC
Found at i:22036245 original size:208 final size:208
Alignment explanation
Indices: 22035882--22036298 Score: 701
Period size: 208 Copynumber: 2.0 Consensus size: 208
22035872 TAAATATTTT
* *
22035882 ATCTATTTAAGGAACTCTTAAGTTTAATTAAGAGTCTCTAAAATAATATATTCGAGTCTACTAAC
1 ATCTATTTAAGGAACTCTTAAGCTTAATTAAGAGTCTCTAAAAAAATATATTCGAGTCTACTAAC
* *
22035947 TAAAATATAGTTCGAGAGTTCGATTACATGTGGACAAGGTGATAGTACCCGCACATATCCATTCA
66 TAAAATATAGTTCGAGAGTTCGATTACATGTGGACAAGGTGATAGCACCCGCACATACCCATTCA
* *
22036012 AATGATGATACCATTTTATTTTAAATTTATCATAAAGTATTATTTCTAATGGTTTTAAAATTTAA
131 AAGGATGATACCATTTTATTTTAAATTTATCATAAAGTATTAATTCTAATGGTTTTAAAATTTAA
22036077 TATTGAATATTAG
196 TATTGAATATTAG
* * *
22036090 ATCTTTTTAAGGTACTCTTAAGCTTGATTAAGAGTCTCTAAAAAAATATATTCGAGTCTACTAAC
1 ATCTATTTAAGGAACTCTTAAGCTTAATTAAGAGTCTCTAAAAAAATATATTCGAGTCTACTAAC
* * *
22036155 TAGAATAT-GATTCGAGAGTTCGATTACATGTGGACAAGGTGATGGCATCCGCACATACCCATTC
66 TAAAATATAG-TTCGAGAGTTCGATTACATGTGGACAAGGTGATAGCACCCGCACATACCCATTC
*
22036219 AAAGGATGATACTATTTTATTTTAAATTTATCATAAAGTATTAATTCTAATGGTTTTAAAATTTA
130 AAAGGATGATACCATTTTATTTTAAATTTATCATAAAGTATTAATTCTAATGGTTTTAAAATTTA
22036284 ATATTGAATATTAG
195 ATATTGAATATTAG
22036298 A
1 A
22036299 AATAATTCTT
Statistics
Matches: 195, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
207 1 0.01
208 194 0.99
ACGTcount: A:0.36, C:0.12, G:0.14, T:0.37
Consensus pattern (208 bp):
ATCTATTTAAGGAACTCTTAAGCTTAATTAAGAGTCTCTAAAAAAATATATTCGAGTCTACTAAC
TAAAATATAGTTCGAGAGTTCGATTACATGTGGACAAGGTGATAGCACCCGCACATACCCATTCA
AAGGATGATACCATTTTATTTTAAATTTATCATAAAGTATTAATTCTAATGGTTTTAAAATTTAA
TATTGAATATTAG
Found at i:22036955 original size:12 final size:12
Alignment explanation
Indices: 22036938--22036995 Score: 64
Period size: 12 Copynumber: 4.8 Consensus size: 12
22036928 GCAAAAATAC
*
22036938 TAAATAAACACA
1 TAAATAAACAAA
22036950 TAAATAAACAAA
1 TAAATAAACAAA
*
22036962 TAAATAAATAAA
1 TAAATAAACAAA
*
22036974 TAAA-ATACAAA
1 TAAATAAACAAA
*
22036985 AAAATGAAACA
1 TAAAT-AAACA
22036996 GCTTAGCTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
11 8 0.21
12 26 0.68
13 4 0.11
ACGTcount: A:0.72, C:0.09, G:0.02, T:0.17
Consensus pattern (12 bp):
TAAATAAACAAA
Found at i:22036956 original size:4 final size:4
Alignment explanation
Indices: 22036938--22036977 Score: 53
Period size: 4 Copynumber: 10.0 Consensus size: 4
22036928 GCAAAAATAC
* * *
22036938 TAAA TAAA CACA TAAA TAAA CAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
22036978 ATACAAAAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.20
Consensus pattern (4 bp):
TAAA
Found at i:22038774 original size:17 final size:17
Alignment explanation
Indices: 22038740--22038774 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
22038730 TCATAAATGT
*
22038740 TAAGATCACTTTAATAA
1 TAAGATCACTTCAATAA
*
22038757 TAAGATCACTTCAGTAA
1 TAAGATCACTTCAATAA
22038774 T
1 T
22038775 TACATTACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (17 bp):
TAAGATCACTTCAATAA
Found at i:22047921 original size:18 final size:18
Alignment explanation
Indices: 22047898--22047932 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22047888 TTCTCTTTCC
22047898 TCTTTTTGA-TTTTTTTTT
1 TCTTTTT-ACTTTTTTTTT
22047916 TCTTTTTACTTTTTTTT
1 TCTTTTTACTTTTTTTT
22047933 CAATGTCCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 15 0.94
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.83
Consensus pattern (18 bp):
TCTTTTTACTTTTTTTTT
Found at i:22048352 original size:19 final size:19
Alignment explanation
Indices: 22048303--22048352 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
22048293 AATATGACAC
22048303 AACACAATTAATATAATTA
1 AACACAATTAATATAATTA
* *
22048322 TATACGAA-TAATATAATTA
1 AACAC-AATTAATATAATTA
22048341 AACACAATTAAT
1 AACACAATTAAT
22048353 TACCTAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 2 0.08
19 21 0.84
20 2 0.08
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.32
Consensus pattern (19 bp):
AACACAATTAATATAATTA
Found at i:22048402 original size:19 final size:19
Alignment explanation
Indices: 22048378--22048426 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
22048368 ATATGGTATA
*
22048378 ATATGATTAATACGATTAT
1 ATATGATTAATACGATTAG
* *
22048397 ATATGAATAACACGATTAG
1 ATATGATTAATACGATTAG
*
22048416 ATATAATTAAT
1 ATATGATTAAT
22048427 TTATTTATTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (19 bp):
ATATGATTAATACGATTAG
Found at i:22048448 original size:29 final size:29
Alignment explanation
Indices: 22048416--22048473 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
22048406 ACACGATTAG
*
22048416 ATAT-AATTAATTTATTTATTTAAATAAAT
1 ATATCAATTAATTTA-GTATTTAAATAAAT
*
22048445 ATATCATTTAATTTAGTATTTAAATAAAT
1 ATATCAATTAATTTAGTATTTAAATAAAT
22048474 TTATTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.50
Consensus pattern (29 bp):
ATATCAATTAATTTAGTATTTAAATAAAT
Found at i:22053440 original size:25 final size:25
Alignment explanation
Indices: 22053410--22053465 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
22053400 AAAAAATGTA
*
22053410 ATTATTACATTAAT-ATAA-ATTAATT
1 ATTATT-CAATAATAATAATATT-ATT
*
22053435 CTTATTCAATAATAATAATATTATT
1 ATTATTCAATAATAATAATATTATT
22053460 ATTATT
1 ATTATT
22053466 GTTAATATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 6 0.23
25 17 0.65
26 3 0.12
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (25 bp):
ATTATTCAATAATAATAATATTATT
Found at i:22053977 original size:16 final size:16
Alignment explanation
Indices: 22053956--22053987 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22053946 AGGGTGTGAC
*
22053956 ACATGCATTTGATCAA
1 ACATGCATCTGATCAA
22053972 ACATGCATCTGATCAA
1 ACATGCATCTGATCAA
22053988 GTACCGAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (16 bp):
ACATGCATCTGATCAA
Found at i:22054345 original size:20 final size:21
Alignment explanation
Indices: 22054320--22054361 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22054310 TTTAGTATAA
*
22054320 AGTTGAT-TATCCTTAAAATT
1 AGTTGATATATCATTAAAATT
22054340 AGTTGATATATCATTAAAATT
1 AGTTGATATATCATTAAAATT
22054361 A
1 A
22054362 ATACTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (21 bp):
AGTTGATATATCATTAAAATT
Found at i:22060416 original size:14 final size:13
Alignment explanation
Indices: 22060365--22060412 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 13
22060355 CTTAGAAAAG
22060365 AAATTAAAAAAGTT
1 AAATTAAAAAA-TT
*
22060379 AAAATAAAAAATT
1 AAATTAAAAAATT
*
22060392 AGTAATTTAAAAATT
1 A--AATTAAAAAATT
22060407 AAATTA
1 AAATTA
22060413 TAAATAAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
13 7 0.25
14 10 0.36
15 11 0.39
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
AAATTAAAAAATT
Found at i:22060525 original size:23 final size:23
Alignment explanation
Indices: 22060495--22060541 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
22060485 CATCAGGTGA
* *
22060495 CCATCACGTGGTAGTAGGAAAAT
1 CCATCACGTGATAGGAGGAAAAT
22060518 CCATCACGTGATAGGAGGAAAAT
1 CCATCACGTGATAGGAGGAAAAT
22060541 C
1 C
22060542 TTTGAGTAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.19, G:0.26, T:0.19
Consensus pattern (23 bp):
CCATCACGTGATAGGAGGAAAAT
Found at i:22061314 original size:24 final size:24
Alignment explanation
Indices: 22061281--22061330 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
22061271 AATGTAGGGC
*
22061281 AATTGAAAGAACAAAAACGATTAA
1 AATTGAAAGAACAAAAAAGATTAA
*
22061305 AATTGGAAGAACAAAAAAGATTAA
1 AATTGAAAGAACAAAAAAGATTAA
22061329 AA
1 AA
22061331 AGTTTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.64, C:0.06, G:0.14, T:0.16
Consensus pattern (24 bp):
AATTGAAAGAACAAAAAAGATTAA
Found at i:22062192 original size:24 final size:24
Alignment explanation
Indices: 22062165--22062218 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
22062155 TCATGTTCTA
* * *
22062165 TGATTATTAATTTTTAAGGTTTTG
1 TGATTATTAAATTTGAAGGATTTG
22062189 TGATTATTAAATTTGAAGGATTTG
1 TGATTATTAAATTTGAAGGATTTG
*
22062213 AGATTA
1 TGATTA
22062219 CATATAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.19, T:0.50
Consensus pattern (24 bp):
TGATTATTAAATTTGAAGGATTTG
Found at i:22062361 original size:11 final size:11
Alignment explanation
Indices: 22062345--22062404 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
22062335 GGAAGGGTCA
*
22062345 AATAATAAGTT
1 AATAATAAATT
22062356 AATAATAAATT
1 AATAATAAATT
*
22062367 AATTAAAAATAAGTT
1 AA-T---AATAAATT
22062382 AATAATAAATT
1 AATAATAAATT
*
22062393 AA-ATTAAATT
1 AATAATAAATT
22062403 AA
1 AA
22062405 AAATGGTTAA
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
10 9 0.22
11 21 0.51
12 1 0.02
14 1 0.02
15 9 0.22
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (11 bp):
AATAATAAATT
Found at i:22062377 original size:15 final size:15
Alignment explanation
Indices: 22062354--22062408 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
22062344 AAATAATAAG
*
22062354 TTAATAATAAATTAA
1 TTAAAAATAAATTAA
*
22062369 TTAAAAATAAGTTAA
1 TTAAAAATAAATTAA
22062384 -TAATAAATTAAATTAAA
1 TTAA-AAA-TAAATT-AA
22062401 TTAAAAAT
1 TTAAAAAT
22062409 GGTTAAAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 3 0.09
15 16 0.48
16 6 0.18
17 5 0.15
18 3 0.09
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (15 bp):
TTAAAAATAAATTAA
Found at i:22062383 original size:26 final size:27
Alignment explanation
Indices: 22062348--22062400 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
22062338 AGGGTCAAAT
22062348 AATAAGTTAATAATAAATT-AATTAAA
1 AATAAGTTAATAATAAATTAAATTAAA
22062374 AATAAGTTAATAATAAATTAAATTAAA
1 AATAAGTTAATAATAAATTAAATTAAA
22062401 TTAAAAATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (27 bp):
AATAAGTTAATAATAAATTAAATTAAA
Found at i:22062973 original size:16 final size:16
Alignment explanation
Indices: 22062952--22063009 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
22062942 ATTATTTTTT
*
22062952 AAATATAAATATTTAA
1 AAATATAAATATATAA
* *
22062968 AAATATCATTATATAA
1 AAATATAAATATATAA
22062984 ATATATATAAATA-A-AA
1 A-A-ATATAAATATATAA
22063000 AAAT-TAAATA
1 AAATATAAATA
22063010 ATTAATTAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 6 0.17
14 2 0.06
15 1 0.03
16 17 0.49
17 2 0.06
18 7 0.20
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATATAAATATATAA
Found at i:22062999 original size:30 final size:30
Alignment explanation
Indices: 22062929--22063000 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 30
22062919 ATCCGACCTG
* * * *
22062929 AAATTAAT-AAAATATTATTTTTTAAATAT
1 AAATAAATAAAAATATCATTATATAAATAT
**
22062958 AAATATTTAAAAATATCATTATATAAATAT
1 AAATAAATAAAAATATCATTATATAAATAT
*
22062988 ATATAAATAAAAA
1 AAATAAATAAAAA
22063001 AATTAAATAA
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
29 5 0.15
30 28 0.85
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (30 bp):
AAATAAATAAAAATATCATTATATAAATAT
Found at i:22063021 original size:21 final size:23
Alignment explanation
Indices: 22062981--22063022 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
22062971 TATCATTATA
22062981 TAAATATATATAAATAAAAAAAT
1 TAAATATATATAAATAAAAAAAT
*
22063004 TAAATA-AT-TAATTAAAAAA
1 TAAATATATATAAATAAAAAA
22063023 TAATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 10 0.56
22 2 0.11
23 6 0.33
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (23 bp):
TAAATATATATAAATAAAAAAAT
Found at i:22063299 original size:20 final size:21
Alignment explanation
Indices: 22063253--22063292 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
22063243 TTTATTTGAT
*
22063253 ATTATTATAAATTAAATTTTA
1 ATTATTATAAATAAAATTTTA
22063274 ATTATTA-AAATAAAATTTT
1 ATTATTATAAATAAAATTTT
22063293 TAATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
ATTATTATAAATAAAATTTTA
Found at i:22071598 original size:17 final size:17
Alignment explanation
Indices: 22071572--22071606 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22071562 TTAATACAAA
22071572 ATACAGATTGCAAACAT
1 ATACAGATTGCAAACAT
*
22071589 ATACATATTGCAAACAT
1 ATACAGATTGCAAACAT
22071606 A
1 A
22071607 CTGTTTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.49, C:0.17, G:0.09, T:0.26
Consensus pattern (17 bp):
ATACAGATTGCAAACAT
Found at i:22087568 original size:26 final size:26
Alignment explanation
Indices: 22087524--22087576 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22087514 TTAATATGGA
* * *
22087524 TTGCAATGGGTTTTTATACCAATTTG
1 TTGCAATGGGCTCTCATACCAATTTG
22087550 TTGCAATGGGCTCTCATACCAATTTG
1 TTGCAATGGGCTCTCATACCAATTTG
22087576 T
1 T
22087577 CATGATTTAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.42
Consensus pattern (26 bp):
TTGCAATGGGCTCTCATACCAATTTG
Found at i:22087686 original size:31 final size:31
Alignment explanation
Indices: 22087608--22087686 Score: 83
Period size: 31 Copynumber: 2.5 Consensus size: 31
22087598 TTAGGGTTTT
*
22087608 AGAGACTAAGAAGAGAACAGATAAGCAATTGA
1 AGAGATTAAGAAGAGAACA-ATAAGCAATTGA
*
22087640 AGAGATTAATG-AGAGAAC-ATAAGAGAATTG-
1 AGAGATTAA-GAAGAGAACAATAAG-CAATTGA
22087670 AGAAGATTAAGAAGAGA
1 AG-AGATTAAGAAGAGA
22087687 CTAGAAAGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
30 8 0.20
31 17 0.41
32 15 0.37
33 1 0.02
ACGTcount: A:0.53, C:0.05, G:0.27, T:0.15
Consensus pattern (31 bp):
AGAGATTAAGAAGAGAACAATAAGCAATTGA
Found at i:22088995 original size:20 final size:20
Alignment explanation
Indices: 22088962--22089037 Score: 61
Period size: 20 Copynumber: 3.9 Consensus size: 20
22088952 CGTGTGGAAA
* *
22088962 GATTGGATGGGGTGGGGAGG
1 GATTGGGTGTGGTGGGGAGG
22088982 GATTGGGTGTGGT---GAGG
1 GATTGGGTGTGGTGGGGAGG
* *
22088999 CG-TTGGGGGGAAGGTGGGGAGG
1 -GATT-GGGTG-TGGTGGGGAGG
22089021 GATTGGGTGTGGTGGGG
1 GATTGGGTGTGGTGGGG
22089038 TGTTTGGAGG
Statistics
Matches: 43, Mismatches: 6, Indels: 14
0.68 0.10 0.22
Matches are distributed among these distances:
17 6 0.14
18 5 0.12
19 3 0.07
20 18 0.42
21 5 0.12
22 6 0.14
ACGTcount: A:0.12, C:0.01, G:0.64, T:0.22
Consensus pattern (20 bp):
GATTGGGTGTGGTGGGGAGG
Found at i:22089554 original size:26 final size:26
Alignment explanation
Indices: 22089526--22089574 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
22089516 TAAAAAATAA
*
22089526 AAAATATAGGTTTGAAAA-TTTTATT
1 AAAATATAAGTTTGAAAACTTTTATT
22089551 AAAATATAAGTTTGAAAACTTTTA
1 AAAATATAAGTTTGAAAACTTTTA
22089575 ATTTTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.47, C:0.02, G:0.10, T:0.41
Consensus pattern (26 bp):
AAAATATAAGTTTGAAAACTTTTATT
Found at i:22096535 original size:1 final size:1
Alignment explanation
Indices: 22096489--22096519 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
22096479 TGTTTTAGGG
22096489 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
22096520 CAGTTCATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:22099382 original size:253 final size:253
Alignment explanation
Indices: 22099117--22099625 Score: 885
Period size: 253 Copynumber: 2.0 Consensus size: 253
22099107 TGAAGACATA
* *
22099117 TATATATATATATATATATTATACATACATGAAAAGAAACTTTTAAACTTTCTACCCTTGTA-CA
1 TATATATATATATATATATTATACATACATGAAAAGAAACATTCAAACTTTCTACCCTTGTAGCA
* * * * *
22099181 CAATACAACCGAAGTTCAAACATAGAAAGGTGGATCTCGAGGAGAGAAAGATTCTCTTCTAAAAG
66 CAATACAACCCAAGTCCAAACAAAGAAAGGTGGATCTCGAGGAGAGAAAGATTCTCTGCTAAAAA
* * *
22099246 TCTGGATGCTGTGCTTGAAAGAAAAAAACCAAAATTTAATCTGTTCTTGTGGCTGATAACACATG
131 TCTGGATGCTGTGCTTGAAAG-AAAAAACCAAAATTTAATCTGTCCTTGTGGCTAATAACACAAG
*
22099311 TGAAAGACAAAAGATCATAGGGAGTTCCATGAAGATTTTCTTATGATAGGCTGGTACTT
195 TGAAAGACAAAAGATCATAGGGAGTTCCATGAAGATTTTCTCATGATAGGCTGGTACTT
*
22099370 TATATATATATATATATTTTATACATACATGAAAAGAAACATTCAAACTTTCTACCCTTGTAGCA
1 TATATATATATATATATATTATACATACATGAAAAGAAACATTCAAACTTTCTACCCTTGTAGCA
22099435 CAATACAACCCAAGTCCAAACAAAGAAAGGTGGATCTCGAGGAGAGAAAGATTCTCTGCTAAAAA
66 CAATACAACCCAAGTCCAAACAAAGAAAGGTGGATCTCGAGGAGAGAAAGATTCTCTGCTAAAAA
22099500 TCTGGATGCTGTGCTTGAAAGAAAAAACCAAAATTTAATCTGTCCTTGTGGCTAATAACACAAGT
131 TCTGGATGCTGTGCTTGAAAGAAAAAACCAAAATTTAATCTGTCCTTGTGGCTAATAACACAAGT
*
22099565 GAAAGCCAAAAGATCATAGGGAGTTCCATGAAGATTTTCTCATGATAGGCTGGTACTT
196 GAAAGACAAAAGATCATAGGGAGTTCCATGAAGATTTTCTCATGATAGGCTGGTACTT
22099623 TAT
1 TAT
22099626 CAGTCAGCAA
Statistics
Matches: 242, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
253 159 0.66
254 83 0.34
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (253 bp):
TATATATATATATATATATTATACATACATGAAAAGAAACATTCAAACTTTCTACCCTTGTAGCA
CAATACAACCCAAGTCCAAACAAAGAAAGGTGGATCTCGAGGAGAGAAAGATTCTCTGCTAAAAA
TCTGGATGCTGTGCTTGAAAGAAAAAACCAAAATTTAATCTGTCCTTGTGGCTAATAACACAAGT
GAAAGACAAAAGATCATAGGGAGTTCCATGAAGATTTTCTCATGATAGGCTGGTACTT
Found at i:22100049 original size:55 final size:55
Alignment explanation
Indices: 22099977--22100087 Score: 222
Period size: 55 Copynumber: 2.0 Consensus size: 55
22099967 ATCGAGATGA
22099977 AGAAAACTTTTGTCTGAATTTAGAGAACACTCCAAATAACTCAAGAATACATTAC
1 AGAAAACTTTTGTCTGAATTTAGAGAACACTCCAAATAACTCAAGAATACATTAC
22100032 AGAAAACTTTTGTCTGAATTTAGAGAACACTCCAAATAACTCAAGAATACATTAC
1 AGAAAACTTTTGTCTGAATTTAGAGAACACTCCAAATAACTCAAGAATACATTAC
22100087 A
1 A
22100088 TTATAGCAAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.44, C:0.18, G:0.11, T:0.27
Consensus pattern (55 bp):
AGAAAACTTTTGTCTGAATTTAGAGAACACTCCAAATAACTCAAGAATACATTAC
Found at i:22105259 original size:21 final size:21
Alignment explanation
Indices: 22105233--22105326 Score: 93
Period size: 21 Copynumber: 4.5 Consensus size: 21
22105223 TTACCAGAAT
*
22105233 CAAAATTATATTTAAGATTAC
1 CAAAATTATATTAAAGATTAC
*
22105254 CAAAATTATATTAAAGATTAT
1 CAAAATTATATTAAAGATTAC
* * *
22105275 CAAAATTATATCAAA-CTTAT
1 CAAAATTATATTAAAGATTAC
* * *
22105295 TAAAATTTTATTAAATG-TTAT
1 CAAAATTATATTAAA-GATTAC
22105316 CAAAATTATAT
1 CAAAATTATAT
22105327 AAATAATCAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
20 16 0.26
21 46 0.74
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.40
Consensus pattern (21 bp):
CAAAATTATATTAAAGATTAC
Found at i:22105288 original size:11 final size:11
Alignment explanation
Indices: 22105254--22105326 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 11
22105244 TTAAGATTAC
22105254 CAAAATTATAT
1 CAAAATTATAT
*
22105265 TAAAGA-T-TAT
1 CAAA-ATTATAT
22105275 CAAAATTATAT
1 CAAAATTATAT
*
22105286 CAAACTTAT-T
1 CAAAATTATAT
*
22105296 -AAAATTTTAT
1 CAAAATTATAT
*
22105306 -TAAATGT-TAT
1 CAAAAT-TATAT
22105316 CAAAATTATAT
1 CAAAATTATAT
22105327 AAATAATCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 14
0.70 0.10 0.20
Matches are distributed among these distances:
9 7 0.15
10 17 0.35
11 23 0.48
12 1 0.02
ACGTcount: A:0.49, C:0.07, G:0.03, T:0.41
Consensus pattern (11 bp):
CAAAATTATAT
Found at i:22106433 original size:18 final size:17
Alignment explanation
Indices: 22106388--22106433 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
22106378 TAGAATCCAA
*
22106388 AATTT-ATTTATTTTTG
1 AATTTAATTTATTTTTC
22106404 AATTTAAGTTTATCTTTTC
1 AATTTAA-TTTAT-TTTTC
22106423 AATTTAATTTA
1 AATTTAATTTA
22106434 ATATTATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
16 5 0.19
17 1 0.04
18 9 0.35
19 11 0.42
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (17 bp):
AATTTAATTTATTTTTC
Found at i:22107307 original size:32 final size:31
Alignment explanation
Indices: 22107247--22107313 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 31
22107237 CTTATTAATC
* *
22107247 TATATTTGTATAATATAAAATATTAAAATTTA
1 TATATTTATATAATATAAAATA-TAAAAATTA
***
22107279 TATATTTATATAATATTTTATATAAAAATTA
1 TATATTTATATAATATAAAATATAAAAATTA
22107310 TATA
1 TATA
22107314 ATATAATTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
31 12 0.40
32 18 0.60
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (31 bp):
TATATTTATATAATATAAAATATAAAAATTA
Found at i:22107321 original size:13 final size:13
Alignment explanation
Indices: 22107278--22107325 Score: 50
Period size: 12 Copynumber: 4.0 Consensus size: 13
22107268 ATTAAAATTT
*
22107278 ATATATTTATATA
1 ATATAATTATATA
*
22107291 ATAT-TTTATATA
1 ATATAATTATATA
22107303 A-A-AATTATATA
1 ATATAATTATATA
22107314 ATATAATT-TATA
1 ATATAATTATATA
22107326 TTGATATGAA
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
11 9 0.29
12 14 0.45
13 8 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATAATTATATA
Found at i:22107327 original size:32 final size:32
Alignment explanation
Indices: 22107270--22107381 Score: 87
Period size: 30 Copynumber: 3.7 Consensus size: 32
22107260 TATAAAATAT
* *
22107270 TAAAATT-TAT-ATATTTATATAATATTTTATA
1 TAAAATTATATAATATATAT-TTATATTTTATA
*
22107301 TAAAAATTATATAATATA-ATTTATA-TTGATA
1 T-AAAATTATATAATATATATTTATATTTTATA
*
22107332 TGAAAA-TATAAAATATATATTT-TATTTTAT-
1 T-AAAATTATATAATATATATTTATATTTTATA
* *
22107362 TAAATTTATATATTAT-TATT
1 TAAAATTATATAATATATATT
22107382 ATTAAATTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
29 7 0.11
30 21 0.32
31 19 0.29
32 10 0.15
33 5 0.08
34 4 0.06
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (32 bp):
TAAAATTATATAATATATATTTATATTTTATA
Found at i:22107403 original size:22 final size:22
Alignment explanation
Indices: 22107342--22107390 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 22
22107332 TGAAAATATA
* *
22107342 AAATATATATTTTATT-TTATT
1 AAATTTATATATTATTATTATT
22107363 AAATTTATATATTATTATTATT
1 AAATTTATATATTATTATTATT
22107385 AAATTT
1 AAATTT
22107391 TAATTTATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 14 0.56
22 11 0.44
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
AAATTTATATATTATTATTATT
Found at i:22108268 original size:6 final size:6
Alignment explanation
Indices: 22108246--22108292 Score: 51
Period size: 6 Copynumber: 7.5 Consensus size: 6
22108236 GCAATAAGAT
*
22108246 ATTTTA ATTTATCA ATTTTA ATTTTTA ATTTTA ATTTTG A-TTTA ATT
1 ATTTTA ATTT-T-A ATTTTA A-TTTTA ATTTTA ATTTTA ATTTTA ATT
22108293 ATTTTTAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
5 4 0.11
6 18 0.51
7 8 0.23
8 5 0.14
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (6 bp):
ATTTTA
Found at i:22108277 original size:13 final size:13
Alignment explanation
Indices: 22108246--22108283 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
22108236 GCAATAAGAT
22108246 ATTTTAATTTATCA
1 ATTTTAATTT-TCA
*
22108260 ATTTTAATTTTTA
1 ATTTTAATTTTCA
22108273 ATTTTAATTTT
1 ATTTTAATTTT
22108284 GATTTAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 13 0.57
14 10 0.43
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (13 bp):
ATTTTAATTTTCA
Found at i:22110638 original size:50 final size:50
Alignment explanation
Indices: 22110562--22110656 Score: 154
Period size: 50 Copynumber: 1.9 Consensus size: 50
22110552 TAGGTTTCAT
* * *
22110562 TCATAGCAAATTGGATTGACATGATGCCATTGCAAATTGAGAAGTTTGAC
1 TCATAGCAAATTGGATGGACACGATGCCATTGCAAATAGAGAAGTTTGAC
*
22110612 TCATAGCAAATTGGATGGACACGATGCCATTGCTAATAGAGAAGT
1 TCATAGCAAATTGGATGGACACGATGCCATTGCAAATAGAGAAGT
22110657 GGAAAGTTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (50 bp):
TCATAGCAAATTGGATGGACACGATGCCATTGCAAATAGAGAAGTTTGAC
Found at i:22115193 original size:46 final size:45
Alignment explanation
Indices: 22115138--22115303 Score: 161
Period size: 41 Copynumber: 3.8 Consensus size: 45
22115128 AAATAATAAT
22115138 TAAAGATGAAAATAATGATAATAAGTAAAAGTAAAAAAATCTAAAAA
1 TAAAGATGAAAATAAT-A-AATAAGTAAAAGTAAAAAAATCTAAAAA
* * *
22115185 TAAA-ATGAAAAT-A-AAAT-AGAAAAAGTAAAATAAA-ATAATAAT
1 TAAAGATGAAAATAATAAATAAGTAAAAGTAAAA-AAATCTAA-AAA
* *
22115227 TAAAGATGAAAATAATAACAATAAGTAAAAATAGAAAAATCTAAAAA
1 TAAAGATGAAAATAAT-A-AATAAGTAAAAGTAAAAAAATCTAAAAA
*
22115274 TAAA-ATGAAAAT-A-AAAT-AGAAAAAGTAAAA
1 TAAAGATGAAAATAATAAATAAGTAAAAGTAAAA
22115304 TAAAATCAAA
Statistics
Matches: 99, Mismatches: 11, Indels: 24
0.74 0.08 0.18
Matches are distributed among these distances:
41 25 0.25
42 15 0.15
43 10 0.10
44 1 0.01
45 2 0.02
46 17 0.17
47 16 0.16
48 13 0.13
ACGTcount: A:0.69, C:0.02, G:0.09, T:0.20
Consensus pattern (45 bp):
TAAAGATGAAAATAATAAATAAGTAAAAGTAAAAAAATCTAAAAA
Found at i:22115233 original size:89 final size:89
Alignment explanation
Indices: 22115126--22115309 Score: 332
Period size: 89 Copynumber: 2.1 Consensus size: 89
22115116 AATTAATTAG
* * *
22115126 TAAAATAATAATTAAAGATGAAAATAATGATAATAAGTAAAAGTAAAAAAATCTAAAAATAAAAT
1 TAAAATAATAATTAAAGATGAAAATAATAACAATAAGTAAAAATAAAAAAATCTAAAAATAAAAT
22115191 GAAAATAAAATAGAAAAAGTAAAA
66 GAAAATAAAATAGAAAAAGTAAAA
*
22115215 TAAAATAATAATTAAAGATGAAAATAATAACAATAAGTAAAAATAGAAAAATCTAAAAATAAAAT
1 TAAAATAATAATTAAAGATGAAAATAATAACAATAAGTAAAAATAAAAAAATCTAAAAATAAAAT
22115280 GAAAATAAAATAGAAAAAGTAAAA
66 GAAAATAAAATAGAAAAAGTAAAA
22115304 TAAAAT
1 TAAAAT
22115310 CAAAACAGAA
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 91 1.00
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (89 bp):
TAAAATAATAATTAAAGATGAAAATAATAACAATAAGTAAAAATAAAAAAATCTAAAAATAAAAT
GAAAATAAAATAGAAAAAGTAAAA
Found at i:22115290 original size:32 final size:30
Alignment explanation
Indices: 22115254--22115314 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
22115244 ACAATAAGTA
*
22115254 AAAATAGAAAAATCTAAAAATAAAATGAAAAT
1 AAAATAGAAAAA-CT-AAAATAAAATCAAAAT
*
22115286 AAAATAGAAAAAGTAAAATAAAATCAAAA
1 AAAATAGAAAAACTAAAATAAAATCAAAA
22115315 CAGAAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 14 0.52
31 1 0.04
32 12 0.44
ACGTcount: A:0.74, C:0.03, G:0.07, T:0.16
Consensus pattern (30 bp):
AAAATAGAAAAACTAAAATAAAATCAAAAT
Found at i:22115297 original size:25 final size:25
Alignment explanation
Indices: 22115269--22115321 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
22115259 AGAAAAATCT
*
22115269 AAAAATAAAATGAAAAT-AAAATAGA
1 AAAAATAAAAT-AAAATCAAAACAGA
*
22115294 AAAAGTAAAATAAAATCAAAACAGA
1 AAAAATAAAATAAAATCAAAACAGA
22115319 AAA
1 AAA
22115322 TATGATGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.75, C:0.04, G:0.08, T:0.13
Consensus pattern (25 bp):
AAAAATAAAATAAAATCAAAACAGA
Found at i:22115314 original size:6 final size:5
Alignment explanation
Indices: 22115181--22115314 Score: 67
Period size: 5 Copynumber: 24.8 Consensus size: 5
22115171 AAAAAATCTA
* *
22115181 AAAAT AAAAT GAAAAT AAAAT AGAA- AAAGT AAAAT AAAAT AATAATT
1 AAAAT AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AA-AA-T
* **
22115228 AAAGAT GAAAAT AATAAC AATAAGT AAAAAT AGAAA- AATCT AAAAAT AAAAT
1 AAA-AT -AAAAT AA-AAT AA-AA-T -AAAAT A-AAAT AAAAT -AAAAT AAAAT
* *
22115280 GAAAAT AAAAT AGAA- AAAGT AAAAT AAAAT CAAAA
1 -AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAA
22115315 CAGAAAATAT
Statistics
Matches: 100, Mismatches: 14, Indels: 29
0.70 0.10 0.20
Matches are distributed among these distances:
4 5 0.05
5 50 0.50
6 34 0.34
7 9 0.09
8 2 0.02
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:22115314 original size:18 final size:19
Alignment explanation
Indices: 22115280--22115323 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
22115270 AAAATAAAAT
*
22115280 GAAAATAAAATAGAAAA-A
1 GAAAATAAAATACAAAACA
22115298 GTAAAATAAAAT-CAAAACA
1 G-AAAATAAAATACAAAACA
22115317 GAAAATA
1 GAAAATA
22115324 TGATGAAAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.73, C:0.05, G:0.09, T:0.14
Consensus pattern (19 bp):
GAAAATAAAATACAAAACA
Found at i:22116519 original size:64 final size:64
Alignment explanation
Indices: 22116405--22116566 Score: 159
Period size: 64 Copynumber: 2.5 Consensus size: 64
22116395 ACTGAGCAAT
* ** *
22116405 TGGGATTGAACTGTACGTTTGAAAAATAAAATGATTTAGAGTAAGCTGAGATCGAAAT-GAGTGA
1 TGGGATTGAATTGTA-GTCAGAAAAATAAAATGATTTAGAGTAAGCTGAGATCAAAATAG-GTGA
22116469 C
64 C
* * *
22116470 TGGGATTGAATTGTAGTCAGAAAAATAAAATGATTT-GAATTGAGTTGAGATCAAAATAGGTGAC
1 TGGGATTGAATTGTAGTCAGAAAAATAAAATGATTTAG-AGTAAGCTGAGATCAAAATAGGTGAC
* * * *
22116534 AGGGATTAAATAGCGAGTTCA-AAAAATAAAATG
1 TGGGATTGAATTG-TAG-TCAGAAAAATAAAATG
22116567 GTATGGACTA
Statistics
Matches: 82, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
63 1 0.01
64 49 0.60
65 29 0.35
66 3 0.04
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.27
Consensus pattern (64 bp):
TGGGATTGAATTGTAGTCAGAAAAATAAAATGATTTAGAGTAAGCTGAGATCAAAATAGGTGAC
Found at i:22116917 original size:65 final size:64
Alignment explanation
Indices: 22116421--22116960 Score: 215
Period size: 65 Copynumber: 8.3 Consensus size: 64
22116411 TGAACTGTAC
* * * * * *
22116421 GTTTGAAAAATAAAATGATTTAGAGTAAG-CTGAGATCGAAATGAGTGACTGGGATTGAATTGTA
1 GTTTAAAAAATAAAATGATTTGGA-CAAGTC-GAGATCGAAACGAGTGACTGGGATTGAATCGCA
22116485 -
64 G
* * ** * ** * * *
22116485 G-TCAGAAAAATAAAATGATTTGAATTGAGTTGAGATC-AAAATAGGTGACAGGGATTAAATAGC
1 GTTTA-AAAAATAAAATGATTTGGA-CAAGTCGAGATCGAAACGA-GTGACTGGGATTGAATCGC
22116548 -G
63 AG
* * * * * * *
22116549 AGTTCAAAAAATAAAATGGTATGGACTAAGTCAAGATCGAAACTATGTGATTGGGATT-AAACTG
1 -GTTTAAAAAATAAAATGATTTGGAC-AAGTCGAGATCGAAACGA-GTGACTGGGATTGAATC-G
*
22116613 CAA
62 CAG
* * * * * * * **
22116616 CTTTAAAAGATAAAATGATCTAGACTGAGTAGAGATCAAAACGAGTGA-TCGAAATTGAATCGCA
1 GTTTAAAAAATAAAATGATTTGGAC-AAGTCGAGATCGAAACGAGTGACT-GGGATTGAATCGCA
22116680 G
64 G
* * * * ***
22116681 G-TCAGAAAAATAAAATGATTTGGATCGAG-CTGAGATTGAAACGAGTTACCATGATTGAATCGC
1 GTTTA-AAAAATAAAATGATTTGGA-CAAGTC-GAGATCGAAACGAGTGACTGGGATTGAATCGC
*
22116744 AA
63 AG
* * * *** * * * * * * ***
22116746 GTCTGAAAAATAAAATGATATGG-GTTGTGCCAAGGTCGAGATGAGTGACTGAGATTAAATTATA
1 GTTTAAAAAATAAAATGATTTGGACAAGT--CGAGATCGAAACGAGTGACTGGGATTGAATCGCA
22116810 G
64 G
*
22116811 GTTTAAAAAATAAAATGATTTGGACTAAG-CTAAGAGT-GAAACGAGTGACTGGGATTGAATCGC
1 GTTTAAAAAATAAAATGATTTGGAC-AAGTC-GAGA-TCGAAACGAGTGACTGGGATTGAATCGC
22116874 AG
63 AG
* * * * *
22116876 GTTTAAAAAATAAAATGATTTTGAGCAAGTCGAGATCGAAACTAGGTGACTAGGATTAAATTGC-
1 GTTTAAAAAATAAAATGATTTGGA-CAAGTCGAGATCGAAACGA-GTGACTGGGATTGAATCGCA
22116940 G
64 G
* *
22116941 GCCTCAAAAAATAAAATGAT
1 G-TTTAAAAAATAAAATGAT
22116961 CTAGACTGAG
Statistics
Matches: 348, Mismatches: 99, Indels: 56
0.69 0.20 0.11
Matches are distributed among these distances:
63 6 0.02
64 47 0.14
65 201 0.58
66 93 0.27
67 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.24, T:0.26
Consensus pattern (64 bp):
GTTTAAAAAATAAAATGATTTGGACAAGTCGAGATCGAAACGAGTGACTGGGATTGAATCGCAG
Found at i:22118033 original size:15 final size:16
Alignment explanation
Indices: 22118015--22118049 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
22118005 TAAAATAACA
22118015 AAAAATTC-AAAATAT
1 AAAAATTCAAAAATAT
22118030 AAAAATTCAAAAATAT
1 AAAAATTCAAAAATAT
22118046 AAAA
1 AAAA
22118050 TAGATAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (16 bp):
AAAAATTCAAAAATAT
Found at i:22118915 original size:3 final size:3
Alignment explanation
Indices: 22118907--22118949 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
22118897 AAGAAAATGA
22118907 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
22118950 TATTTATAAG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:22121331 original size:25 final size:26
Alignment explanation
Indices: 22121276--22121337 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 26
22121266 ATAAAAACAT
22121276 TATTTAATTATCTTTTAAATTTCAAA
1 TATTTAATTATCTTTTAAATTTCAAA
* * *
22121302 AATTTAA-TAT-TTTATATATTTTAAA
1 TATTTAATTATCTTT-TAAATTTCAAA
22121327 TATTTCAATTA
1 TATTT-AATTA
22121338 CTAATAACAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
24 3 0.10
25 16 0.55
26 8 0.28
27 2 0.07
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (26 bp):
TATTTAATTATCTTTTAAATTTCAAA
Found at i:22124519 original size:375 final size:373
Alignment explanation
Indices: 22123533--22127866 Score: 6476
Period size: 375 Copynumber: 11.6 Consensus size: 373
22123523 TATATAGATA
* *
22123533 TTGTT-ATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAATTTGACTTTTATAAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
* *
22123597 ATTTTTTGTCAATAATAGTATGTTTTCCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
66 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
* *
22123662 AATTTTTATAAGTGATCGATAAGTTGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATT
131 AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATT
22123727 GACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGA
196 GACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGA
22123792 ATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAG
261 ATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGAC--AAAAAATAG
* * *
22123857 CAAAATCTGATCTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
324 CAGAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
* *
22123907 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATAAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
22123971 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
66 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
* *
22124036 AATTTTTATAAGTGATCGATAAGTTGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATT
131 AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATT
22124101 GACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGA
196 GACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGA
22124166 ATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAAATAATTAGACAAAAAATAGC
261 ATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAAT-AAAAAAAATAATTAGACAAAAAATAGC
**
22124231 AGAATCTGATCCAATGATCTTGATTTTCAAAATTTTTCTATTATTTTCT
325 AGAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
* * *
22124280 TTGTTGATGATTTCTTTTTTTTTTTGGCAAAGGTTCACTACCAGAAATTTGACTTTTATAAATGA
1 TTGTTGATGATTTC-TTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGA
*
22124345 AATTTTTTGTCAATAATAATAT-TTTTTCCATTGATAACAACATTACTAATAAAATTTACCAACG
65 AATTTTTTGTCAATAATAATATGTTTTT-CGTTGATAACAACATTACTAATAAAATTTACCAACG
*
22124409 AAAACTTTTT-TAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCAC-AATTAGCAAATTG
129 AAAA-TTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCA-TAGCAAATTG
* * * * * * *
22124472 GATTGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCAT
192 GATTGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTAT
* * * * * **
22124537 TGGAATAATTTCATTGA-GAAAGTTTTTGCCTAGGAAACAATAAAATAATTGTTTAGACCAAAAA
257 TGGAATCATTTCATTGATG-GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGA-CAAAAA
* * *
22124601 ATTAGCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTTCTGTTATTTTCT
320 A-TAGCAGAATCTGATCCAATGATCTTGATTTTCAA--TTTTTTTCTATTATTTTCT
*
22124658 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
*
22124723 ATTTTTTGTCAATAATAGA-ATGTTTTTTGTTGATAACAACATTACTAATAAAA-TTACCAACGA
66 ATTTTTTGTCAATAATA-ATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGA
*
22124786 AAATTTTTATAAGTGATAGATAAGTTGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
130 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
*
22124851 TGACATGATGCCATAGCAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
22124916 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATA
260 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGAC--AAAAAATA
* * *
22124981 GCAGAATTTGATCTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
323 GCAGAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
*
22125032 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
* * * * * *
22125096 ATTTTTTGTTAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAA
66 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
* **
22125161 AATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAAATAGCAAATTGGATT
131 AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATT
* * * * * * *
22125226 GATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGA
196 GACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGA
* * * * **
22125291 ATAATTTCATTGA-GAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTA
261 ATCATTTCATTGATG-GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGA-CAAAAAA-TA
* * *
22125355 GCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCT
323 GCAGAATCTGATCCAATGATCTTGATTTTCAA-TTTTTTTCTATTATTTTCT
* * *
22125407 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACTAGTAAATTGACTTTTATTAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
* *
22125472 ATTTTTTGTCAATAATAGA-ATGTTTTTTGTTGATAACAACATTACTAATAAAA-TTACTAACGA
66 ATTTTTTGTCAATAATA-ATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGA
*
22125535 AAATTTTTATAAGTGATAGATAGGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
130 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
*
22125600 TGACATGATGCCATAGCAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
22125665 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATA
260 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGAC--AAAAAATA
* *
22125730 GCAGAATCTGATCTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
323 GCAGAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
*
22125781 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
* * * * *
22125845 ATTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAA
66 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
* *
22125910 AATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCAC-AATTAGCAAATTGGAT
131 AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCA-TAGCAAATTGGAT
* * * * * * *
22125974 TGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
* * * * **
22126039 AATAATTTCATTGA-GAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATT
260 AATCATTTCATTGATG-GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGA-CAAAAAA-T
* * *
22126103 AGCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCT
322 AGCAGAATCTGATCCAATGATCTTGATTTTCAA-TTTTTTTCTATTATTTTCT
*
22126156 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
*
22126221 ATTTTTTGTCAATAATAGA-ATGTTTTTTGTTGATAACAACATTACTAATAAAA-TTACCAACGA
66 ATTTTTTGTCAATAATA-ATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGA
22126284 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
130 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
*
22126349 TGACATGATGCCATAGCAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
22126414 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAATAG
260 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGAC-AAAAAATAG
*
22126479 CAGAATCTGATCTAATGATCTTGATTTTCAA--------T-TT-TTTTCT
324 CAGAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
*
22126519 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
* * * * * *
22126583 ATTTTTTGTTAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAA
66 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
* *
22126648 AATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCAC-AATTAGCAAATTGGAT
131 AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCA-TAGCAAATTGGAT
* * * * * * *
22126712 TGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
* * * * * **
22126777 AATAATTTCATTGA-GAAAGTTTTTGCCTAGGAAACAATAAAATAATTGTTTAGACCAAAAAATT
260 AATCATTTCATTGATG-GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGA-CAAAAAA-T
* * *
22126841 AGCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTTCTGTTATTTTCT
322 AGCAGAATCTGATCCAATGATCTTGATTTTCAA--TTTTTTTCTATTATTTTCT
*
22126895 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
*
22126960 ATTTTTTGTCAATAATAGA-ATGTTTTTTGTTGATAACAACATTACTAATAAAA-TTACCAACGA
66 ATTTTTTGTCAATAATA-ATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGA
22127023 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
130 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
*
22127088 TGACATGATGCCATAGCAAATGGAGAAGTGGGGTTGAGCCTAGG-TTCAATTTTTGAATTATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
22127152 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATA
260 AATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGAC--AAAAAATA
* * *
22127217 GCAGAATTTGATCTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
323 GCAGAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
*
22127268 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATCAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
* * * * * *
22127332 ATTTTTTGTTAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAA
66 ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
* *
22127397 AATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCAC-AATTAGCAAATTGGAT
131 AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCA-TAGCAAATTGGAT
* * * * * * *
22127461 TGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
* * * * **
22127526 AATAATTTCATTGA-GAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATT
260 AATCATTTCATTGATG-GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGA-CAAAAAA-T
* * *
22127590 AGCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCT
322 AGCAGAATCTGATCCAATGATCTTGATTTTCAA-TTTTTTTCTATTATTTTCT
* * *
22127643 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACTAGTAAATTGACTTTTATTAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
*
22127708 ATTTTTTGTCAATAATAGA-ATGTTTTTTGTTGATAACAACATTACTAATAAAA-TTACCAACGA
66 ATTTTTTGTCAATAATA-ATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGA
22127771 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
130 AAATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGAT
* *
22127836 TAACATGATGCCATTGCAAATAGAGAAGTGG
195 TGACATGATGCCATAGCAAATAGAGAAGTGG
22127867 AAAGTTGATA
Statistics
Matches: 3582, Mismatches: 301, Indels: 153
0.89 0.07 0.04
Matches are distributed among these distances:
361 1 0.00
362 71 0.02
363 222 0.06
364 34 0.01
365 1 0.00
371 1 0.00
372 72 0.02
373 390 0.11
374 945 0.26
375 1030 0.29
376 607 0.17
377 171 0.05
378 37 0.01
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (373 bp):
TTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAAATTGACTTTTATCAATGAA
ATTTTTTGTCAATAATAATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
AATTTTTATAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATT
GACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGA
ATCATTTCATTGATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAATAGCA
GAATCTGATCCAATGATCTTGATTTTCAATTTTTTTCTATTATTTTCT
Found at i:22125666 original size:749 final size:749
Alignment explanation
Indices: 22123533--22127866 Score: 7758
Period size: 749 Copynumber: 5.8 Consensus size: 749
22123523 TATATAGATA
* * *
22123533 TTGTT-ATGATTTCTTATTTTTTTGGCAAAGGTTCACTACCAGAAATTTGACTTTTATAAATGAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATCAATGAA
* * * * * * *
22123597 ATTTTTTGTCAATAATAGTATGTTTTCCGTTGATAACAACATTACTAATAAAATTTACCAACGAA
65 ATTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAA
* * * *
22123662 AATTTTTATAAGTGATCGATAAGTTGATAAAATGTTGCTAGGTTTCACTCA-TAGCAAATTGGAT
130 AATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCAC-AATTAGCAAATTGGAT
* * * * * * *
22123726 TGACATGATGCCATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGG
194 TGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGG
* * * * ** * *
22123791 AATCATTTCATTGATG-GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAAT
259 AATAATTTCATTGA-GAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATT
* * * * **
22123855 AGCAAAATCTGATCTAATGATCTTGATTTTCAA-TTTTTTTCAATTATTTTCTTTGTTGATGATT
323 AGCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATT
* * *
22123919 TCTTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATAAATGAAATTTTTTGTCAA
388 TCTTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAA
*
22123983 TAATA-ATATGTTTTTCGTTGATAACAACATTACTAATAAAATTTACCAACGAAAATTTTTATAA
453 TAATAGA-ATGTTTTTTGTTGATAACAACATTACTAATAAAA-TTACCAACGAAAATTTTTATAA
* *
22124047 GTGATCGATAAGTTGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCC
516 GTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCC
*
22124112 ATAGCAAATAGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATT
581 ATAGCAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATT
22124177 GATGGAGTTTTTGCTTAGGAAACAATAAAAAAAAATAATTAGAC--AAAAAATAGCAGAATCTGA
646 GATGGAGTTTTTGCTTAGGAAACAAT-AAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGA
* ** *
22124240 TCCAATGATCTTGATTTTCAAAATTTTTCTATTATTTTCT
710 TCTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
* * * *
22124280 TTGTTGATGATTTCTTTTTTTTTTTGGCAAAGGTTCACTACCAGAAATTTGACTTTTATAAATGA
1 TTGTTGATGATTTC-TTATTTTTTTGGCAAAAGTTCACTACCA-AAAATTGACTTTTATCAATGA
* * * *
22124345 AATTTTTTGTCAATAATAATAT-TTTTTCCATTGATAACAACATTACTAATAAAATTTACCAACG
64 AATTTTTTGTCAATAATAATATGTTTTT-CATTGACAACAACATTACTAATAAAATTTTCCGATG
22124409 AAAACTTTTT-TAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGG
128 AAAA-TTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGG
22124473 ATTGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATT
192 ATTGATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATT
*
22124538 GGAATAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAATTGTTTAGACCAAAAAAT
257 GGAATAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAAT
22124603 TAGCAGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTTCTGTTATTTTCTTTGTTGATGA
322 TAGCAGAATCTAATCCAATTATCTTGATTTTCAA-TTTTTTTTCTGTTATTTTCTTTGTTGATGA
22124668 TTTCTTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTC
386 TTTCTTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTC
22124733 AATAATAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAA
451 AATAATAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAA
*
22124798 GTGATAGATAAGTTGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCC
516 GTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCC
22124863 ATAGCAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATT
581 ATAGCAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATT
*
22124928 GATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATTTGAT
646 GATGGAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGAT
22124993 CTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
711 CTAATGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
22125032 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
*
22125097 TTTTTTGTTAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
66 TTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
*
22125162 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAAATAGCAAATTGGATTG
131 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
22125227 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
196 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
22125292 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
261 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
22125357 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
326 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
* *
22125422 TATTTTTTTGGCAAAGGTTCACTACTAGTAAATTGACTTTTATTAATGAAATTTTTTGTCAATAA
391 TATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATAA
*
22125487 TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACTAACGAAAATTTTTATAAGTGAT
456 TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGAT
*
22125552 AGATAGGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAGC
521 AGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAGC
22125617 AAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATTGATGG
586 AAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATTGATGG
22125682 AGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGATCTAAT
651 AGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGATCTAAT
22125747 GATCTTGATTTTCAATTTTTTTCAATTATTTTCT
716 GATCTTGATTTTCAATTTTTTTCAATTATTTTCT
22125781 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
22125846 TTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
66 TTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
22125911 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
131 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
22125976 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
196 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
22126041 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
261 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
22126106 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
326 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
22126171 TATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATAA
391 TATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATAA
22126236 TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGAT
456 TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGAT
22126301 AGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAGC
521 AGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAGC
22126366 AAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATTGATGG
586 AAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATTGATGG
22126431 AGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGAC-AAAAAAATAGCAGAATCTGATCTAAT
651 AGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGATCTAAT
22126495 GATCTTGATTTTCAA------T---TT-TTTTCT
716 GATCTTGATTTTCAATTTTTTTCAATTATTTTCT
22126519 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
*
22126584 TTTTTTGTTAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
66 TTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
22126649 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
131 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
22126714 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
196 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
*
22126779 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAATTGTTTAGACCAAAAAATTAGC
261 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
22126844 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTTCTGTTATTTTCTTTGTTGATGATTTC
326 AGAATCTAATCCAATTATCTTGATTTTCAA-TTTTTTTTCTGTTATTTTCTTTGTTGATGATTTC
22126909 TTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATA
390 TTATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATA
22126974 ATAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGA
455 ATAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGA
22127039 TAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAG
520 TAGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAG
22127104 CAAATGGAGAAGTGGGGTTGAGCCTAGG-TTCAATTTTTGAATTATTGGAATCATTTCATTGATG
585 CAAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATTGATG
*
22127168 GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATTTGATCTAA
650 GAGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGATCTAA
22127233 TGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
715 TGATCTTGATTTTCAATTTTTTTCAATTATTTTCT
22127268 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
1 TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
*
22127333 TTTTTTGTTAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
66 TTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
22127398 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
131 ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
22127463 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
196 ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
22127528 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
261 TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
22127593 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
326 AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
* *
22127658 TATTTTTTTGGCAAAGGTTCACTACTAGTAAATTGACTTTTATTAATGAAATTTTTTGTCAATAA
391 TATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATAA
22127723 TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGAT
456 TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGAT
* *
22127788 AGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTAACATGATGCCATTGC
521 AGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAGC
*
22127853 AAATAGAGAAGTGG
586 AAATGGAGAAGTGG
22127867 AAAGTTGATA
Statistics
Matches: 3489, Mismatches: 72, Indels: 51
0.97 0.02 0.01
Matches are distributed among these distances:
738 434 0.12
739 299 0.09
742 1 0.00
745 1 0.00
747 5 0.00
748 296 0.08
749 1735 0.50
750 314 0.09
751 264 0.08
752 139 0.04
753 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.39
Consensus pattern (749 bp):
TTGTTGATGATTTCTTATTTTTTTGGCAAAAGTTCACTACCAAAAATTGACTTTTATCAATGAAA
TTTTTTGTCAATAATAATATGTTTTTCATTGACAACAACATTACTAATAAAATTTTCCGATGAAA
ATTTTTGTAAGTGATAGATAAGTCGATAAAATGTTGCTAGGTTTCACAATTAGCAAATTGGATTG
ATAAGATGCCATTGCAAATATAGAAGTGGGTTTGAGCCTAGGTTTCAAATTTTGAATCATTGGAA
TAATTTCATTGAGAAAGTTTTTGCCTAGGAAACAATAAAATAAATGTTTAGACCAAAAAATTAGC
AGAATCTAATCCAATTATCTTGATTTTCAATTTTTTTTCTGTTATTTTCTTTGTTGATGATTTCT
TATTTTTTTGGCAAAGGTTCACTACTAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATAA
TAGAATGTTTTTTGTTGATAACAACATTACTAATAAAATTACCAACGAAAATTTTTATAAGTGAT
AGATAAGTCGATAAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATAGC
AAATGGAGAAGTGGGGTTGAGCCTAGGTTTCAATTTTTGAATTATTGGAATCATTTCATTGATGG
AGTTTTTGCTTAGGAAACAATAAAAAAAATAATTAGACAAAAAAAATAGCAGAATCTGATCTAAT
GATCTTGATTTTCAATTTTTTTCAATTATTTTCT
Found at i:22131370 original size:367 final size:367
Alignment explanation
Indices: 22130473--22131516 Score: 1536
Period size: 375 Copynumber: 2.8 Consensus size: 367
22130463 ATAGGTCTAA
*
22130473 TTTTTGCTTAGGAAACAA-AGAAAATAAATAATTAGACAAAAAAAAAATTAGCAAAATCTGATCC
1 TTTTTGCTTAGGAAACAATA-AAAATAAATAATTAGAC----AAAAAATTAGCAGAATCTGATCC
* * *
22130537 GATGATCTTAATTTTCAATTTTTTTCAATTATTTTCTTTGTTGATGATTTCTTATTTTTTTAGCA
61 AATGATCTTGATTTTCAATTTTTTT--ATTATTTTCTTTGTTGATGATTTCTTATTTTTTTGGCA
*
22130602 AAGGTTCACTACCAGAAAATTGACTTTTATCAATGAAATTTTTTGTCAATAATAATATGTTTTTC
124 AAGGTTCACTACCAGAAAATTGACTTTTATAAATGAAATTTTTTGTCAATAATAATATGTTTTTC
* * * *
22130667 ATTGATAACAACGTTACTAATTAAATTTACCGATGAAAACTTTTATAAGTGATTGATTAGTTGAT
189 ATTGATAACAACGTTACTAATAAAATTTACCGATGAAAATTTTTATAAGTGATAGATAAGTTGAT
*
22130732 AAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATGATGCCATTGCAAATATAGAAAT
254 AAAATGTTGCTAGGTTTCACTCATAGCAAATTGGATTGAC---AT-CC--TGCAAATAGAGAAAT
* *
22130797 GGGGTTGAGCTTAGGTTTCAATTTTTGAATCATTGTAATCATTTCATTGATAAAG
313 GGGGTTGAGCCTAGGTTTCAATTTTTGAATCATTGGAATCATTTCATTGATAAAG
*
22130852 GTTTTGCTTAGGAAACAATAAAAATAAATAATTAGACCCAAAAAATTAGCAGAATCTGATCCAAT
1 TTTTTGCTTAGGAAACAATAAAAATAAATAATTAGA--CAAAAAATTAGCAGAATCTGATCCAAT
* * *
22130917 GTTCTTGATTTTTAATTTTTTTATTATTTTCTTTGTTGATGATTTCTTATTATTTTGGCAAAGGT
64 GATCTTGATTTTCAATTTTTTTATTATTTTCTTTGTTGATGATTTCTTATTTTTTTGGCAAAGGT
* * * **
22130982 TCACTACTAGAAAAATGACTTTTATAAAAGAAATTTTTTGTCAATAATAATATGTTTTTCGGTGA
129 TCACTACCAGAAAATTGACTTTTATAAATGAAATTTTTTGTCAATAATAATATGTTTTTCATTGA
*
22131047 TAACAACATTACTAATAAAATTTACCGATGAAAATTTTTATAAGTGATAGATAAGTTGATAAAAT
194 TAACAACGTTACTAATAAAATTTACCGATGAAAATTTTTATAAGTGATAGATAAGTTGATAAAAT
* *
22131112 GTTGCTAGGTTTCACTCATAGCAAATTGGATTGACAT-C-GCAAGTAGAGAAGTGGGGTTGAGCC
259 GTTGCTAGGTTTCACTCATAGCAAATTGGATTGACATCCTGCAAATAGAGAAATGGGGTTGAGCC
22131175 TAGGTTTCAATTTTTGAATCATTGGAATCATTTCATTGATAAAG
324 TAGGTTTCAATTTTTGAATCATTGGAATCATTTCATTGATAAAG
* *
22131219 TTTTTGCTTAGGAAACAATAAAAATAAATAATTAGACAAAAAACTTAGTAGAATCTGATCTAATG
1 TTTTTGCTTAGGAAACAATAAAAATAAATAATTAGACAAAAAA-TTAGCAGAATCTGATCCAATG
* * *
22131284 ATCTTGATTTTCAACTTTTTTTGTTATTTTCTTTGTTGAGGATTTCTTATTTTTTTGGCAAGGGT
65 ATCTTGATTTTCAA-TTTTTTTATTATTTTCTTTGTTGATGATTTCTTATTTTTTTGGCAAAGGT
* * * *
22131349 TCACTGCCAGAAAATTGACTTTTATGAATGAAATTTTTTTGTCAATAATAACATGTTTTCCATTG
129 TCACTACCAGAAAATTGACTTTTATAAATGAAA-TTTTTTGTCAATAATAATATGTTTTTCATTG
* ** * * *
22131414 ATAACAACGTTACTAATAAAATTTACCAACAAAAATTTTTATAAATGATAGACACGTTGATAAAA
193 ATAACAACGTTACTAATAAAATTTACCGATGAAAATTTTTATAAGTGATAGATAAGTTGATAAAA
* *
22131479 TGTTACTAGGTTTCACTCATTGCAAATTGGATTGACAT
258 TGTTGCTAGGTTTCACTCATAGCAAATTGGATTGACAT
22131517 GATGCCATTG
Statistics
Matches: 608, Mismatches: 51, Indels: 23
0.89 0.07 0.03
Matches are distributed among these distances:
365 7 0.01
366 31 0.05
367 173 0.28
368 121 0.20
370 1 0.00
372 2 0.00
375 195 0.32
377 43 0.07
379 33 0.05
380 1 0.00
381 1 0.00
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.39
Consensus pattern (367 bp):
TTTTTGCTTAGGAAACAATAAAAATAAATAATTAGACAAAAAATTAGCAGAATCTGATCCAATGA
TCTTGATTTTCAATTTTTTTATTATTTTCTTTGTTGATGATTTCTTATTTTTTTGGCAAAGGTTC
ACTACCAGAAAATTGACTTTTATAAATGAAATTTTTTGTCAATAATAATATGTTTTTCATTGATA
ACAACGTTACTAATAAAATTTACCGATGAAAATTTTTATAAGTGATAGATAAGTTGATAAAATGT
TGCTAGGTTTCACTCATAGCAAATTGGATTGACATCCTGCAAATAGAGAAATGGGGTTGAGCCTA
GGTTTCAATTTTTGAATCATTGGAATCATTTCATTGATAAAG
Found at i:22131563 original size:50 final size:50
Alignment explanation
Indices: 22131488--22131589 Score: 168
Period size: 50 Copynumber: 2.0 Consensus size: 50
22131478 ATGTTACTAG
* *
22131488 GTTTCACTCATTGCAAATTGGATTGACATGATGCCATTGCAAATAAAGAA
1 GTTTCACTCATAGCAAATTAGATTGACATGATGCCATTGCAAATAAAGAA
* *
22131538 GTTTCACTCATAGCAAATTAGATTGACATGATGCCATTTCAAATAGAGAA
1 GTTTCACTCATAGCAAATTAGATTGACATGATGCCATTGCAAATAAAGAA
22131588 GT
1 GT
22131590 GGAAAGTTGA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (50 bp):
GTTTCACTCATAGCAAATTAGATTGACATGATGCCATTGCAAATAAAGAA
Found at i:22132129 original size:20 final size:20
Alignment explanation
Indices: 22132106--22132152 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
22132096 AAAAAAAAAC
22132106 AAAATGCAATAAAA-AAATGA
1 AAAATGCAATAAAAGAAA-GA
*
22132126 AAAATACAATAAAATGAAAGA
1 AAAATGCAATAAAA-GAAAGA
22132147 AAAATG
1 AAAATG
22132153 GATGAACAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 13 0.57
21 7 0.30
22 3 0.13
ACGTcount: A:0.70, C:0.04, G:0.11, T:0.15
Consensus pattern (20 bp):
AAAATGCAATAAAAGAAAGA
Found at i:22134067 original size:65 final size:62
Alignment explanation
Indices: 22133996--22134311 Score: 268
Period size: 65 Copynumber: 4.9 Consensus size: 62
22133986 AACCGCATGT
*
22133996 TCAAAAATTAAAATGATCTGGACTGAGCAGAGATCGAAACGAGTGACTGAGATTGAACAACAAG
1 TCAAAAAATAAAATGATCTGGACTGAGCA-AGATCGAAACGAGTGACTGAGATTGAAC-ACAAG
* * * ***
22134060 TCAAAAAAATAAAATGATCTGGA-TCGTGCTAAGATCGAAATGAGTGA-TCGGGATTGAACTGTG
1 TC-AAAAAATAAAATGATCTGGACT-GAGC-AAGATCGAAACGAGTGACT-GAGATTGAAC-ACA
22134123 AG
61 AG
* * * *
22134125 TTTAAAAAATAAAATGATCTGGACTAGACCAAGATCGAAACGAGTGA-TCAAAATTGAATCACAA
1 -TCAAAAAATAAAATGATCTGGACT-GAGCAAGATCGAAACGAGTGACT-GAGATTGAA-CACAA
22134189 G
62 G
* * *
22134190 T-AAAAAA-AAAATGATTTGGACTGAGCTGAGATCGAAACTAAGTGACTGAGATTGAAC-CGTGA
1 TCAAAAAATAAAATGATCTGGACTGAGC-AAGATCGAAAC-GAGTGACTGAGATTGAACAC---A
*
22134252 AT
61 AG
*
22134254 TCAAAAAATAAAATGATCTGGACTGAGCCAAGATTGAAAACGAGTGACTTG-GATTGAA
1 TCAAAAAATAAAATGATCTGGACTGAG-CAAGATCG-AAACGAGTGAC-TGAGATTGAA
22134312 TCGTGAGTTA
Statistics
Matches: 204, Mismatches: 30, Indels: 34
0.76 0.11 0.13
Matches are distributed among these distances:
61 4 0.02
62 25 0.12
63 18 0.09
64 9 0.04
65 100 0.49
66 41 0.20
67 7 0.03
ACGTcount: A:0.43, C:0.12, G:0.22, T:0.22
Consensus pattern (62 bp):
TCAAAAAATAAAATGATCTGGACTGAGCAAGATCGAAACGAGTGACTGAGATTGAACACAAG
Found at i:22134196 original size:130 final size:127
Alignment explanation
Indices: 22133995--22134302 Score: 365
Period size: 128 Copynumber: 2.4 Consensus size: 127
22133985 TAACCGCATG
* * * *
22133995 TTCAAAAATTAAAATGATCTGGACTGAGCAGAGATCGAAACGAGTGACTGAGATTGAACAACAAG
1 TTCAAAAAATAAAATGATCTGGACTGACCA-AGATCGAAACGAGTGACTAAAATTGAACAACAAG
* * * *
22134060 TCAAAAAAATAAAATGATCTGGA-TCGTGCTAAGATCGAAA-TGAGTGA-TCGGGATTGAACTGT
65 T--AAAAAA-AAAATGATCTGGACT-GAGCTAAGATCGAAACTAAGTGACT-GAGATTGAACCGT
*
22134122 GAG
125 GAA
*
22134125 TTTAAAAAATAAAATGATCTGGACTAGACCAAGATCGAAACGAGTGA-TCAAAATTGAATC-ACA
1 TTCAAAAAATAAAATGATCTGGACT-GACCAAGATCGAAACGAGTGACT-AAAATTGAA-CAACA
* *
22134188 AGTAAAAAAAAAATGATTTGGACTGAGCTGAGATCGAAACTAAGTGACTGAGATTGAACCGTGAA
63 AGTAAAAAAAAAATGATCTGGACTGAGCTAAGATCGAAACTAAGTGACTGAGATTGAACCGTGAA
*
22134253 TTCAAAAAATAAAATGATCTGGACTGAGCCAAGATTGAAAACGAGTGACT
1 TTCAAAAAATAAAATGATCTGGACTGA-CCAAGATCG-AAACGAGTGACT
22134303 TGGATTGAAT
Statistics
Matches: 155, Mismatches: 14, Indels: 18
0.83 0.07 0.10
Matches are distributed among these distances:
127 27 0.17
128 58 0.37
129 12 0.08
130 53 0.34
131 5 0.03
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (127 bp):
TTCAAAAAATAAAATGATCTGGACTGACCAAGATCGAAACGAGTGACTAAAATTGAACAACAAGT
AAAAAAAAAATGATCTGGACTGAGCTAAGATCGAAACTAAGTGACTGAGATTGAACCGTGAA
Found at i:22135659 original size:65 final size:64
Alignment explanation
Indices: 22135580--22135825 Score: 200
Period size: 68 Copynumber: 3.8 Consensus size: 64
22135570 GATCGTGCTC
*
22135580 AGATCGAAATGAGTGATCGAGATTGAA-CTGTGAGTTTAAAAAAATAAAATGATCTGGACTAGAC
1 AGATCGAAACGAGTGATCGAGATTGAATC-GTGAG-TTAAAAAAATAAAATGATCTGGACTAGAC
22135644 A
64 A
* * *** *
22135645 AGATCGAAACGAGTGATCAAAATTGAATCACAAG-T-AAAAAA-AAAATGATTTGGACT-GAGCT
1 AGATCGAAACGAGTGATCGAGATTGAATCGTGAGTTAAAAAAATAAAATGATCTGGACTAGA-C-
*
22135706 G
64 A
* * * *
22135707 AGATCGAAACTAAGTGA-CTGAGATTGAACCGCGTGAATTCAAAAAATAAAATGATCTGGACTGA
1 AGATCGAAAC-GAGTGATC-GAGATTGAA--TCGTGAGTTAAAAAAATAAAATGATCTGGACT-A
*
22135771 GCCA
61 GACA
* *
22135775 AGATTGAAAACGAGTGACTTG-GATTGAATCGTGAGTTAGAAAAAATAAAAT
1 AGATCG-AAACGAGTGA-TCGAGATTGAATCGTGAGTTA-AAAAAATAAAAT
22135826 TAAAAATTTT
Statistics
Matches: 140, Mismatches: 25, Indels: 30
0.72 0.13 0.15
Matches are distributed among these distances:
60 2 0.01
61 15 0.11
62 17 0.12
63 13 0.09
65 28 0.20
66 9 0.06
67 18 0.13
68 31 0.22
69 6 0.04
70 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (64 bp):
AGATCGAAACGAGTGATCGAGATTGAATCGTGAGTTAAAAAAATAAAATGATCTGGACTAGACA
Done.