Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 118 of 133
Found at i:22691570 original size:136 final size:134
Alignment explanation
Indices: 22691332--22691577 Score: 352
Period size: 136 Copynumber: 1.8 Consensus size: 134
22691322 ATAAAATTAT
* * * * *
22691332 AAATTTTTATATACGTAGAAATTTCGTGGAGGGGGCATAGTGCTTTCAACCCTTTCTTTTGCTTC
1 AAATTGTTATATACGTAGAAATTTCGTGGAGGGGACATAGCGCTTTCAACCCTTTCTTTGGCTCC
* * *
22691397 AATCCAACAATAATCAATATTATAGCATTGAACAAGACAAATAACGTGGATCGGTTCCAAGATAA
66 AATCCAAAAAGAATCAATATCATAGCATTGAACAAGACAAATAACGTGGATCGGTTCCAAGATAA
22691462 ACTC
131 ACTC
*
22691466 AAATTGTTATATATGTAGAAATTTCGTGGAGGGGACATAGCGC-TTCAACCACCTTTTCTTTGGC
1 AAATTGTTATATACGTAGAAATTTCGTGGAGGGGACATAGCGCTTTCAA-C-CC-TTTCTTTGGC
*
22691530 TCCAATCCAAAAAGAATTAATATCATAGCATTG-ACGAAGACAAATAAC
63 TCCAATCCAAAAAGAATCAATATCATAGCATTGAAC-AAGACAAATAAC
22691578 ACGGATCAGT
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
133 5 0.05
134 40 0.41
135 4 0.04
136 49 0.50
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (134 bp):
AAATTGTTATATACGTAGAAATTTCGTGGAGGGGACATAGCGCTTTCAACCCTTTCTTTGGCTCC
AATCCAAAAAGAATCAATATCATAGCATTGAACAAGACAAATAACGTGGATCGGTTCCAAGATAA
ACTC
Found at i:22692391 original size:2 final size:2
Alignment explanation
Indices: 22692384--22692408 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22692374 TCAATTATTG
22692384 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22692409 CTTAGAATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22696320 original size:18 final size:18
Alignment explanation
Indices: 22696297--22696358 Score: 54
Period size: 18 Copynumber: 3.4 Consensus size: 18
22696287 AATATATTTA
22696297 TATTTAAATAATTATAAT
1 TATTTAAATAATTATAAT
* *
22696315 TATTT-ATTATATAATAAT
1 TATTTAAATA-ATTATAAT
* ** *
22696333 TTTTTATTTAAATATAAT
1 TATTTAAATAATTATAAT
22696351 TATTTAAA
1 TATTTAAA
22696359 ATATAAATAA
Statistics
Matches: 33, Mismatches: 9, Indels: 4
0.72 0.20 0.09
Matches are distributed among these distances:
17 3 0.09
18 27 0.82
19 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TATTTAAATAATTATAAT
Found at i:22696330 original size:24 final size:25
Alignment explanation
Indices: 22696285--22696333 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
22696275 TTTATGAATA
*
22696285 ATAATATATTTATATTTAAATAATT
1 ATAATATATTTATATATAAATAATT
22696310 ATAAT-TATTTAT-TATATAATAATT
1 ATAATATATTTATATATA-AATAATT
22696334 TTTTATTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 3 0.14
24 14 0.64
25 5 0.23
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
ATAATATATTTATATATAAATAATT
Found at i:22696355 original size:14 final size:15
Alignment explanation
Indices: 22696336--22696364 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22696326 TAATAATTTT
22696336 TTATTT-AAATATAA
1 TTATTTAAAATATAA
22696350 TTATTTAAAATATAA
1 TTATTTAAAATATAA
22696365 ATAAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TTATTTAAAATATAA
Found at i:22696376 original size:15 final size:17
Alignment explanation
Indices: 22696358--22696391 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
22696348 AATTATTTAA
22696358 AATATAAAT-AA-AATT
1 AATATAAATCAATAATT
22696373 AATATAAATCAATAATT
1 AATATAAATCAATAATT
22696390 AA
1 AA
22696392 ATTTTTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 2 0.12
17 6 0.35
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (17 bp):
AATATAAATCAATAATT
Found at i:22696826 original size:26 final size:26
Alignment explanation
Indices: 22696797--22696853 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
22696787 AATTTTTATA
* * *
22696797 TTATTAATAAATTAAATTATATCATT
1 TTATTAATAAAATAAATCAAATCATT
*
22696823 TTATTAATAAAATAAATCAAATGATT
1 TTATTAATAAAATAAATCAAATCATT
22696849 TTATT
1 TTATT
22696854 TTATTAATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (26 bp):
TTATTAATAAAATAAATCAAATCATT
Found at i:22696837 original size:31 final size:30
Alignment explanation
Indices: 22696802--22696870 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 30
22696792 TTATATTATT
*
22696802 AATAAATTAAATTATATCATTTTATTAATAA
1 AATAAATTAAATGATATCATTTTATTAAT-A
* * * *
22696833 AATAAATCAAATGATTTTATTTTATTAATT
1 AATAAATTAAATGATATCATTTTATTAATA
22696863 AATAAATT
1 AATAAATT
22696871 TTTTGAAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 7 0.22
31 25 0.78
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.46
Consensus pattern (30 bp):
AATAAATTAAATGATATCATTTTATTAATA
Found at i:22698300 original size:10 final size:9
Alignment explanation
Indices: 22698284--22698393 Score: 51
Period size: 9 Copynumber: 11.6 Consensus size: 9
22698274 CCTTAGAAAG
22698284 AAAAATTTA
1 AAAAATTTA
22698293 AGAAAATTCTA
1 A-AAAATT-TA
*
22698304 AAAACTTTTA
1 AAAA-ATTTA
22698314 AAAAATTATGA
1 AAAAATT-T-A
* *
22698325 AATATTTTA
1 AAAAATTTA
*
22698334 AGAAATTATA
1 AAAAATT-TA
22698344 AAAAA-TTA
1 AAAAATTTA
* **
22698352 AAAAGTCCGA
1 AAAAAT-TTA
**
22698362 AAATTTTTA
1 AAAAATTTA
**
22698371 AAATTTTTA
1 AAAAATTTA
22698380 AAAAATTTA
1 AAAAATTTA
22698389 AAAAA
1 AAAAA
22698394 AATTATGAAA
Statistics
Matches: 76, Mismatches: 17, Indels: 16
0.70 0.16 0.15
Matches are distributed among these distances:
8 6 0.08
9 31 0.41
10 28 0.37
11 11 0.14
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.34
Consensus pattern (9 bp):
AAAAATTTA
Found at i:22698318 original size:20 final size:19
Alignment explanation
Indices: 22698284--22698347 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
22698274 CCTTAGAAAG
*
22698284 AAAAA-TTTAAGAAAATTCT
1 AAAAATTTTAA-AAAATTAT
22698303 AAAAACTTTTAAAAAATTAT
1 AAAAA-TTTTAAAAAATTAT
* *
22698323 GAAATATTTTAAGAAATTAT
1 -AAAAATTTTAAAAAATTAT
22698343 AAAAA
1 AAAAA
22698348 ATTAAAAAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
19 9 0.24
20 20 0.53
21 9 0.24
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (19 bp):
AAAAATTTTAAAAAATTAT
Found at i:22698319 original size:30 final size:31
Alignment explanation
Indices: 22698284--22698350 Score: 77
Period size: 30 Copynumber: 2.2 Consensus size: 31
22698274 CCTTAGAAAG
*
22698284 AAAAATTTAAGAAA-ATTCTAA-AAACTTTTA
1 AAAAATTTAAGAAATATTCTAAGAAA-TTATA
* *
22698314 AAAAA-TTATGAAATATTTTAAGAAATTATA
1 AAAAATTTAAGAAATATTCTAAGAAATTATA
22698344 AAAAATT
1 AAAAATT
22698351 AAAAAGTCCG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
29 7 0.23
30 20 0.65
31 4 0.13
ACGTcount: A:0.58, C:0.03, G:0.04, T:0.34
Consensus pattern (31 bp):
AAAAATTTAAGAAATATTCTAAGAAATTATA
Found at i:22698604 original size:10 final size:10
Alignment explanation
Indices: 22698589--22698621 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
22698579 AAGAAATATG
22698589 AAAATTTTAA
1 AAAATTTTAA
*
22698599 AAAATTCTAA
1 AAAATTTTAA
22698609 AAAATTTTAA
1 AAAATTTTAA
22698619 AAA
1 AAA
22698622 TAAAAAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:22698627 original size:16 final size:16
Alignment explanation
Indices: 22698606--22698674 Score: 57
Period size: 16 Copynumber: 4.1 Consensus size: 16
22698596 TAAAAAATTC
22698606 TAAAAAATTTTAAAAA
1 TAAAAAATTTTAAAAA
*
22698622 TAAAAAATTTCCAAAAA
1 TAAAAAATTT-TAAAAA
* * *
22698639 TGAAACATTCTAAAAA
1 TAAAAAATTTTAAAAA
*
22698655 GTTATAAAAAATTTAAAAA
1 --TA-AAAAATTTTAAAAA
22698674 T
1 T
22698675 TTCAGAAAAA
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
16 15 0.38
17 13 0.32
18 1 0.03
19 11 0.28
ACGTcount: A:0.62, C:0.06, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAAAAATTTTAAAAA
Found at i:22698705 original size:22 final size:22
Alignment explanation
Indices: 22698660--22698706 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22698650 AAAAAGTTAT
***
22698660 AAAAAATTTAAAAATTTCAGAA
1 AAAAAATTTAAAAATAAAAGAA
*
22698682 AAAAAATTTAAAAATAAAATAA
1 AAAAAATTTAAAAATAAAAGAA
22698704 AAA
1 AAA
22698707 TAAAAAATCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (22 bp):
AAAAAATTTAAAAATAAAAGAA
Found at i:22698732 original size:21 final size:20
Alignment explanation
Indices: 22698708--22698750 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
22698698 AAATAAAAAT
*
22698708 AAAAAATCTAAAAAAATTCAA
1 AAAAAATATAAAAAAATT-AA
* *
22698729 AAAATATATAAAGAAATTAA
1 AAAAAATATAAAAAAATTAA
22698749 AA
1 AA
22698751 TTGAAAGATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (20 bp):
AAAAAATATAAAAAAATTAA
Found at i:22699157 original size:2 final size:2
Alignment explanation
Indices: 22699150--22699174 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
22699140 TTTGGTTGCC
22699150 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
22699175 TGCAAAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22699601 original size:23 final size:25
Alignment explanation
Indices: 22699556--22699601 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
22699546 TTATCAAAAA
* *
22699556 AATAATAATTTAAATATTTATTATT
1 AATAATAATTTAAAAATTGATTATT
22699581 AATAA-AA-TTAAAAATTGATTA
1 AATAATAATTTAAAAATTGATTA
22699602 AAATTTCATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 12 0.63
24 2 0.11
25 5 0.26
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
AATAATAATTTAAAAATTGATTATT
Found at i:22713848 original size:369 final size:364
Alignment explanation
Indices: 22713146--22714142 Score: 1350
Period size: 369 Copynumber: 2.7 Consensus size: 364
22713136 CTAATGCAAG
* *
22713146 TGTCAC-AGACCTAAGGAGGAGTCTTGAATCCTACATCGAACATAAAAGGAGGGTCACTAGGGTA
1 TGTCACGA-ACCTAA-GAGGAGTCTTGAATCCCACATCG-ACATAAAAGGAGGGTCACTGGGGTA
* * *
22713210 TAAAAGGGTTCACACTACCTTCCCCTTGTGAGGTGCCTTTTGTAGGATAAAACCATGAGGTTAGG
63 TAAAAGGGTTCACACTATCTTCCCCTTGTGAGGCGCCTTTTGTAGGAT-AAACCATGAGGCTAGG
* * * * *
22713275 GGAGCCAAAGTGGACAATACCTCATAAGAGTGTGAACCCTGGCAGGTAGGCTGATCTGGGAAGCT
127 GG-GCCAGAGCGGACAATACCTCACAAGGGTGTGAACCCTGGCAGGTAGGCTGATCTGGGACGC-
* *
22713340 GGATGAGTGCATGCCTAGGTCCTGGAGCCGCGCAGGTCAGAGCTTAAGTCTCGGCCTGTGACAAG
190 GGATGAGTGCATGCCT-GGTCCCGGAGCCGCGCAGGTCAGAGCTTAAGTCTCGGCCCGTGACAAG
* * *
22713405 TGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCTAAGCACCTTGAGAGAGGTAGGCAGAGT
254 TGGTATCAGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGAGAGGTAGGCAGAGT
* * *
22713470 GGTCAGCCTCCGTGACGAGGGCGTTACGAGGTTGGGTGGGGGAAAA
319 GGCCAGCCTCCATGACGAGGGCATTACGAGGTTGGGTGGGGGAAAA
* *
22713516 TGTCATGAACCTAAGAAGGAGTCATGAATCCCACATCAGACATAAAAGGAGGGTCACTGGGGTAT
1 TGTCACGAACCTAAG-AGGAGTCTTGAATCCCACATC-GACATAAAAGGAGGGTCACTGGGGTAT
* ** *
22713581 AAAAAGGTTCACACTATCTTCCCCTTGTGAGGCGCCTTTTGTAGGATAAACTGTGAGGCCAAGGG
64 AAAAGGGTTCACACTATCTTCCCCTTGTGAGGCGCCTTTTGTAGGATAAACCATGAGG-CTAGGG
* *
22713646 GGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCCTAGCAGGTAGGCTGATTTGGGACGTCGG
128 GGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCCTGGCAGGTAGGCTGATCTGGGACG-CGG
* *
22713711 ATGAGTGCATGCCTGTGTCCCGCAGCCGCGCAGGTC-GAAGCTTAAGTCTCAGCCCGTGACAAGT
192 ATGAGTGCATGCCTG-GTCCCGGAGCCGCGCAGGTCAG-AGCTTAAGTCTCGGCCCGTGACAAGT
* * *
22713775 GGTATCAGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGGGAGGTTGGCAGGGTG
255 GGTATCAGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGAGAGGTAGGCAGAGTG
*
22713840 GCCAGCCTCCATGACGAGGGCATTACGAGGTTGGGTGGGGGAGAA
320 GCCAGCCTCCATGACGAGGGCATTACGAGGTTGGGTGGGGGAAAA
* * *
22713885 TGTCACGGACCTAATGAGGAGTCTTGAATCCCACATCGGACATAAAAGGAGAGTCATTGGGGTAT
1 TGTCACGAACCTAA-GAGGAGTCTTGAATCCCACATC-GACATAAAAGGAGGGTCACTGGGGTAT
* * * * *
22713950 AGAAGGGTTCACACTATCTTCCCCTTATGAGGCACTTTTTGTAGGACAAAACCATGAGGCTAGAG
64 AAAAGGGTTCACACTATCTTCCCCTTGTGAGGCGCCTTTTGTAGGA-TAAACCATGAGGCTAG-G
* * * * *
22714015 GGGTCAGAGCGAACAATACCTCACAAGGGTGTGAACCATGGCAGGTAGGTTGAGCTGAGGACGCC
127 GGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCCTGGCAGGTAGGCTGATCTG-GGACG-C
* * * * *
22714080 GGATGAGTGCATGCCCGGATCTCGGAGCCTCGTAGGTTAGAGCTTAAGTCTCGGCCCGTGACA
190 GGATGAGTGCATGCCTGG-TCCCGGAGCCGCGCAGGTCAGAGCTTAAGTCTCGGCCCGTGACA
22714143 CAAAAACTAA
Statistics
Matches: 552, Mismatches: 62, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
368 2 0.00
369 322 0.58
370 167 0.30
371 60 0.11
372 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.20
Consensus pattern (364 bp):
TGTCACGAACCTAAGAGGAGTCTTGAATCCCACATCGACATAAAAGGAGGGTCACTGGGGTATAA
AAGGGTTCACACTATCTTCCCCTTGTGAGGCGCCTTTTGTAGGATAAACCATGAGGCTAGGGGGC
CAGAGCGGACAATACCTCACAAGGGTGTGAACCCTGGCAGGTAGGCTGATCTGGGACGCGGATGA
GTGCATGCCTGGTCCCGGAGCCGCGCAGGTCAGAGCTTAAGTCTCGGCCCGTGACAAGTGGTATC
AGAGCCAACCCTAAACCGTTCGATCCACGCCAAGCACCTCGAGAGAGGTAGGCAGAGTGGCCAGC
CTCCATGACGAGGGCATTACGAGGTTGGGTGGGGGAAAA
Found at i:22716653 original size:23 final size:21
Alignment explanation
Indices: 22716610--22716653 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
22716600 ATCCATCATC
*
22716610 TCTTTCTAAAACCAAATCAAT
1 TCTTTCTAAAACCAAACCAAT
*
22716631 TCTTTCTCTAAACCTAAACCAAT
1 TCTTTCT-AAAACC-AAACCAAT
22716654 CCACAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 7 0.37
22 5 0.26
23 7 0.37
ACGTcount: A:0.39, C:0.27, G:0.00, T:0.34
Consensus pattern (21 bp):
TCTTTCTAAAACCAAACCAAT
Found at i:22717780 original size:23 final size:23
Alignment explanation
Indices: 22717750--22717793 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
22717740 TTATTTGTGG
22717750 ATTAGTTTGAGTTTAGAGAGAAA
1 ATTAGTTTGAGTTTAGAGAGAAA
*
22717773 ATTAGTTTGATTTTAGAGAGA
1 ATTAGTTTGAGTTTAGAGAGA
22717794 GAGAATGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.25, T:0.39
Consensus pattern (23 bp):
ATTAGTTTGAGTTTAGAGAGAAA
Found at i:22717807 original size:21 final size:21
Alignment explanation
Indices: 22717783--22717846 Score: 85
Period size: 21 Copynumber: 3.0 Consensus size: 21
22717773 ATTAGTTTGA
*
22717783 TTTTAGAGAG-AGAGAATGAAT
1 TTTTAGAGAGAAAAG-ATGAAT
*
22717804 TTTTAAAGAGAAAAGATGAAT
1 TTTTAGAGAGAAAAGATGAAT
*
22717825 TTTTAGAGAGAAATGATGAAT
1 TTTTAGAGAGAAAAGATGAAT
22717846 T
1 T
22717847 GAGATGAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
21 35 0.92
22 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.23, T:0.31
Consensus pattern (21 bp):
TTTTAGAGAGAAAAGATGAAT
Found at i:22719137 original size:16 final size:17
Alignment explanation
Indices: 22719101--22719138 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
22719091 TAATTTATGG
* *
22719101 TAAAAATGTTAAATTAA
1 TAAATATGTTAAATAAA
22719118 TAAATATGTTAAA-AAA
1 TAAATATGTTAAATAAA
22719134 TAAAT
1 TAAAT
22719139 TACTTAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 7 0.37
17 12 0.63
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (17 bp):
TAAATATGTTAAATAAA
Found at i:22719195 original size:23 final size:25
Alignment explanation
Indices: 22719157--22719202 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
22719147 AAATTGAGCA
22719157 TTTTATAATCTAATAAAATTATATT
1 TTTTATAATCTAATAAAATTATATT
*
22719182 TTTTA-AATCT-ATAATATTATA
1 TTTTATAATCTAATAAAATTATA
22719203 ATACATGAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 10 0.50
24 5 0.25
25 5 0.25
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.52
Consensus pattern (25 bp):
TTTTATAATCTAATAAAATTATATT
Found at i:22719882 original size:16 final size:18
Alignment explanation
Indices: 22719852--22719884 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
22719842 TCTTTTTTTT
22719852 ATATATAAATCAATTATA
1 ATATATAAATCAATTATA
22719870 ATATA-AAAT-AATTAT
1 ATATATAAATCAATTAT
22719885 TATTCTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 4 0.27
18 5 0.33
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
ATATATAAATCAATTATA
Found at i:22730757 original size:18 final size:18
Alignment explanation
Indices: 22730734--22730769 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22730724 TATTATAATT
22730734 AAATAAAAAAAATTTAAA
1 AAATAAAAAAAATTTAAA
22730752 AAATAAAAAAAATTTAAA
1 AAATAAAAAAAATTTAAA
22730770 TTCATAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (18 bp):
AAATAAAAAAAATTTAAA
Found at i:22731345 original size:22 final size:22
Alignment explanation
Indices: 22731317--22731367 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
22731307 GTAATATTAC
22731317 AATGCACTTAACAATTAAACCA
1 AATGCACTTAACAATTAAACCA
22731339 AATGCACTTAACAATTAAACCA
1 AATGCACTTAACAATTAAACCA
22731361 AATGCAC
1 AATGCAC
22731368 AATTACCTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.49, C:0.24, G:0.06, T:0.22
Consensus pattern (22 bp):
AATGCACTTAACAATTAAACCA
Found at i:22751017 original size:59 final size:58
Alignment explanation
Indices: 22750949--22751103 Score: 186
Period size: 60 Copynumber: 2.6 Consensus size: 58
22750939 CTTCAATATA
*
22750949 TTGGCAAGATTCATTTTTATTCAAAAATTCTTTTTTAGAAATTTAAACCATCCAACATG
1 TTGGTAAGATTCATTTTTATTCAAAAATT-TTTTTTAGAAATTTAAACCATCCAACATG
* * * * *
22751008 TTGGTAAGATTCATTTTTTATTCAAAAATTTATTTTTAGAAGTTTGAACCCTTCAATATG
1 TTGGTAAGATTCA-TTTTTATTCAAAAATTT-TTTTTAGAAATTTAAACCATCCAACATG
* *
22751068 -TGATAAGATTCATTTTTATTTGAAAAGATTTTTTTT
1 TTGGTAAGATTCATTTTTA-TTCAAAA-ATTTTTTTT
22751104 TATTTTTTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
58 6 0.07
59 35 0.42
60 43 0.51
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (58 bp):
TTGGTAAGATTCATTTTTATTCAAAAATTTTTTTTAGAAATTTAAACCATCCAACATG
Found at i:22751137 original size:4 final size:4
Alignment explanation
Indices: 22751128--22751258 Score: 106
Period size: 4 Copynumber: 32.8 Consensus size: 4
22751118 AATTATTTAC
* *
22751128 AAAT AAAT AAAT ACAT AAAT -AAT CAAAT AAAT AAAT AAAAT AAAC AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT AAAT -AAAT AAAT AAAT
* * * * * * *
22751177 AAAT AAAC CACT AAAT AAAT AAAC AAAT AAA- CAAT TAAT AAAGA AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA-T AAAT
* * *
22751225 ATAC AAAT AAAT GAA- AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
22751259 AATGAAATTA
Statistics
Matches: 98, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
3 7 0.07
4 81 0.83
5 10 0.10
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:22758454 original size:22 final size:21
Alignment explanation
Indices: 22758425--22758465 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
22758415 TTTTTCTTTT
22758425 GTTTTTTTTTCTTTTTTTGTG
1 GTTTTTTTTTCTTTTTTTGTG
*
22758446 GTTTGTTTTTTTTTTTTTTG
1 GTTT-TTTTTTCTTTTTTTG
22758466 GCTTGGTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.00, C:0.02, G:0.15, T:0.83
Consensus pattern (21 bp):
GTTTTTTTTTCTTTTTTTGTG
Found at i:22758465 original size:15 final size:15
Alignment explanation
Indices: 22758415--22758464 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
22758405 CTACAAACTA
*
22758415 TTTTTCTTTTGTTTT
1 TTTTTCTTTTTTTTT
*
22758430 TTTTTCTTTTTTTGT
1 TTTTTCTTTTTTTTT
** *
22758445 GGTTTGTTTTTTTTT
1 TTTTTCTTTTTTTTT
22758460 TTTTT
1 TTTTT
22758465 GGCTTGGTTC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.86
Consensus pattern (15 bp):
TTTTTCTTTTTTTTT
Found at i:22759179 original size:15 final size:15
Alignment explanation
Indices: 22759159--22759208 Score: 82
Period size: 15 Copynumber: 3.3 Consensus size: 15
22759149 AAAAGAAAAT
22759159 TTTTTTTTTGTTTTG
1 TTTTTTTTTGTTTTG
22759174 TTTTTTTTTGTTTTG
1 TTTTTTTTTGTTTTG
*
22759189 TTTTGTTTTTTTTTTG
1 TTTT-TTTTTGTTTTG
22759205 TTTT
1 TTTT
22759209 GAAGCAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 19 0.58
16 14 0.42
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (15 bp):
TTTTTTTTTGTTTTG
Found at i:22759187 original size:20 final size:21
Alignment explanation
Indices: 22759158--22759209 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
22759148 CAAAAGAAAA
22759158 TTTTTT-TTTTGTTTTG-TTT
1 TTTTTTGTTTTGTTTTGTTTT
22759177 TTTTTTGTTTTGTTTTGTTTT
1 TTTTTTGTTTTGTTTTGTTTT
22759198 TTTTTTGTTTTG
1 TTTTTTGTTTTG
22759210 AAGCAAATCC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 6 0.19
20 10 0.32
21 15 0.48
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (21 bp):
TTTTTTGTTTTGTTTTGTTTT
Found at i:22759209 original size:5 final size:5
Alignment explanation
Indices: 22759159--22759209 Score: 66
Period size: 5 Copynumber: 10.0 Consensus size: 5
22759149 AAAAGAAAAT
* * *
22759159 TTTTT TTTTG TTTTG TTTTT TTTTG TTTTG TTTTG TTTTTT TTTTG TTTTG
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG -TTTTG TTTTG TTTTG
22759210 AAGCAAATCC
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
5 36 0.90
6 4 0.10
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (5 bp):
TTTTG
Found at i:22763188 original size:22 final size:23
Alignment explanation
Indices: 22763161--22763212 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
22763151 ATAATTAATC
22763161 AAATTAATTT-AA-AAATTAAGAA
1 AAATTAATTTAAATAAATTAA-AA
22763183 AAATTAATTTAAATTAAATTAAAA
1 AAATTAATTTAAA-TAAATTAAAA
22763207 AAATTA
1 AAATTA
22763213 CAAAGAAAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 10 0.37
23 2 0.07
24 8 0.30
25 7 0.26
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (23 bp):
AAATTAATTTAAATAAATTAAAA
Found at i:22764745 original size:12 final size:13
Alignment explanation
Indices: 22764728--22764759 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
22764718 TGGTTCTTAG
22764728 GAAAAAAA-AAAA
1 GAAAAAAACAAAA
22764740 GAAAAAAACAAAA
1 GAAAAAAACAAAA
22764753 -AAAAAAA
1 GAAAAAAA
22764760 GGAAAGGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (13 bp):
GAAAAAAACAAAA
Found at i:22773723 original size:2 final size:2
Alignment explanation
Indices: 22773718--22773752 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
22773708 TGTGTGCCAC
* *
22773718 AT AT AT GT AT AT AA AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22773753 AAGAGATCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:22774221 original size:18 final size:18
Alignment explanation
Indices: 22774198--22774233 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
22774188 TATTATAATT
*
22774198 AAATAAAAAATATTTAAA
1 AAATAAAAAAAATTTAAA
22774216 AAATAAAAAAAATTTAAA
1 AAATAAAAAAAATTTAAA
22774234 TTCATAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (18 bp):
AAATAAAAAAAATTTAAA
Found at i:22776232 original size:16 final size:16
Alignment explanation
Indices: 22776190--22776239 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
22776180 GTCTACATTG
* *
22776190 GACCTCACTTATACTA
1 GACCTTACTTATATTA
22776206 GACC-T--TTATATTA
1 GACCTTACTTATATTA
22776219 GACCTTACTTATATTA
1 GACCTTACTTATATTA
*
22776235 AACCT
1 GACCT
22776240 ATCTCAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
13 11 0.39
14 1 0.04
16 16 0.57
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (16 bp):
GACCTTACTTATATTA
Found at i:22777070 original size:12 final size:14
Alignment explanation
Indices: 22777053--22777084 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
22777043 ATCATAAAAG
22777053 ATAAAAGAT-GC-A
1 ATAAAAGATGGCAA
22777065 ATAAAAGATGGCAA
1 ATAAAAGATGGCAA
22777079 ATAAAA
1 ATAAAA
22777085 ATCAACTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 2 0.11
14 7 0.39
ACGTcount: A:0.62, C:0.06, G:0.16, T:0.16
Consensus pattern (14 bp):
ATAAAAGATGGCAA
Found at i:22777228 original size:25 final size:25
Alignment explanation
Indices: 22777194--22777241 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
22777184 ATAATTTTGA
*
22777194 AAAAATATTTACATTT-TTTGAATTG
1 AAAAAGATTTAC-TTTATTTGAATTG
*
22777219 AAAAAGATTTTCTTTATTTGAAT
1 AAAAAGATTTACTTTATTTGAAT
22777242 GCGTTAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 3 0.15
25 17 0.85
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
AAAAAGATTTACTTTATTTGAATTG
Found at i:22777435 original size:18 final size:18
Alignment explanation
Indices: 22777412--22777452 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
22777402 TATTTTAATG
*
22777412 ATATTAT-TTAGTATTAAA
1 ATATTATGTTAATA-TAAA
22777430 ATATTATGTTAATATAAA
1 ATATTATGTTAATATAAA
22777448 ATATT
1 ATATT
22777453 TAAAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (18 bp):
ATATTATGTTAATATAAA
Found at i:22777562 original size:22 final size:23
Alignment explanation
Indices: 22777537--22777604 Score: 68
Period size: 22 Copynumber: 2.9 Consensus size: 23
22777527 AAAATAATAA
*
22777537 TATTATGATATTATTTATT-AAT
1 TATTATAATATTATTTATTAAAT
* *
22777559 TATTACAATATTATTTCTTAAAT
1 TATTATAATATTATTTATTAAAT
22777582 TATTATTTAATA-TATTTGATTAA
1 TATTA--TAATATTATTT-ATTAA
22777605 TAGTATATTA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
22 16 0.43
23 8 0.22
24 5 0.14
25 8 0.22
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (23 bp):
TATTATAATATTATTTATTAAAT
Found at i:22777888 original size:14 final size:15
Alignment explanation
Indices: 22777869--22777897 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22777859 CCAAAAAATA
22777869 TGAAAA-TCATTTTC
1 TGAAAAGTCATTTTC
22777883 TGAAAAGTCATTTTC
1 TGAAAAGTCATTTTC
22777898 CGATGAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (15 bp):
TGAAAAGTCATTTTC
Found at i:22778048 original size:16 final size:18
Alignment explanation
Indices: 22778034--22778079 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
22778024 TAATATTTTT
22778034 AAATAA-ATTTATTTTAA
1 AAATAATATTTATTTTAA
*
22778051 AAATAATATTTA-TTAATA
1 AAATAATATTTATTTTA-A
22778069 AAATAATATTT
1 AAATAATATTT
22778080 TGTACTAGTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
AAATAATATTTATTTTAA
Found at i:22782889 original size:23 final size:18
Alignment explanation
Indices: 22782834--22782879 Score: 92
Period size: 18 Copynumber: 2.6 Consensus size: 18
22782824 TTAGATCATT
22782834 TATTAAAACAATAAAATC
1 TATTAAAACAATAAAATC
22782852 TATTAAAACAATAAAATC
1 TATTAAAACAATAAAATC
22782870 TATTAAAACA
1 TATTAAAACA
22782880 GAACAATAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (18 bp):
TATTAAAACAATAAAATC
Found at i:22785089 original size:17 final size:17
Alignment explanation
Indices: 22785067--22785115 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
22785057 AATTTTGCTT
22785067 TTATTTTGTATTTTA-TA
1 TTATTTT-TATTTTATTA
*
22785084 TTATTTTTATTTTTATTT
1 TTATTTTTA-TTTTATTA
22785102 TTATTTTATATTTT
1 TTATTTT-TATTTT
22785116 TTTCCTTTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
16 2 0.07
17 12 0.43
18 12 0.43
19 2 0.07
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (17 bp):
TTATTTTTATTTTATTA
Found at i:22785095 original size:6 final size:6
Alignment explanation
Indices: 22785065--22785116 Score: 63
Period size: 6 Copynumber: 8.7 Consensus size: 6
22785055 CCAATTTTGC
*
22785065 TTTTAT TTTGTA- TTTTA- TATTAT TTTTAT TTTTAT TTTTAT TTTATAT
1 TTTTAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT-TAT
22785113 TTTT
1 TTTT
22785117 TTCCTTTGTA
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 6 0.15
6 27 0.66
7 8 0.20
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:22785106 original size:28 final size:28
Alignment explanation
Indices: 22785065--22785159 Score: 95
Period size: 28 Copynumber: 3.2 Consensus size: 28
22785055 CCAATTTTGC
22785065 TTTTATTTTGTATTTTATATTATTTTTAT
1 TTTTATTTTGTATTTTATATT-TTTTTAT
*
22785094 TTTTATTTT-TATTTTATATTTTTTTCCT
1 TTTTATTTTGTATTTTATATTTTTTT-AT
* *
22785122 TTGTATCTTATGTA-TTTATTATTTATTTAT
1 TTTTAT-TT-TGTATTTTA-TATTTTTTTAT
22785152 TTATTATT
1 TT-TTATT
22785160 ACTATGTATT
Statistics
Matches: 55, Mismatches: 5, Indels: 11
0.77 0.07 0.15
Matches are distributed among these distances:
27 5 0.09
28 17 0.31
29 11 0.20
30 9 0.16
31 13 0.24
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (28 bp):
TTTTATTTTGTATTTTATATTTTTTTAT
Found at i:22785110 original size:23 final size:24
Alignment explanation
Indices: 22785065--22785115 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
22785055 CCAATTTTGC
22785065 TTTTATTTTGTATTTTATATTAT-
1 TTTTATTTTGTATTTTATATTATA
*
22785088 TTTTATTTT-TATTTTTATTTTATA
1 TTTTATTTTGTA-TTTTATATTATA
22785112 TTTT
1 TTTT
22785116 TTTCCTTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
22 2 0.08
23 19 0.76
24 4 0.16
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (24 bp):
TTTTATTTTGTATTTTATATTATA
Found at i:22785238 original size:12 final size:11
Alignment explanation
Indices: 22785223--22785282 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
22785213 TATATGTATT
22785223 TTATTTATCTA
1 TTATTTATCTA
* *
22785234 GTTATATATTTA
1 -TTATTTATCTA
22785246 TTATTATAT-TA
1 TTATT-TATCTA
*
22785257 TAATTTATCTA
1 TTATTTATCTA
22785268 TTA-TTAT-TA
1 TTATTTATCTA
22785277 TTATTT
1 TTATTT
22785283 TATTTATCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
9 5 0.12
10 9 0.22
11 14 0.35
12 12 0.30
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (11 bp):
TTATTTATCTA
Found at i:22785244 original size:21 final size:20
Alignment explanation
Indices: 22785219--22785333 Score: 64
Period size: 21 Copynumber: 5.7 Consensus size: 20
22785209 TTTATATATG
22785219 TATTTTATTTATCTAGTTATA
1 TATTTTATTTATCTA-TTATA
22785240 TA-TTTA-TTAT-TA-TATTA
1 TATTTTATTTATCTATTA-TA
* *
22785257 TAATTTATCTAT-TATTATTA
1 TATTTTATTTATCTATTA-TA
22785277 TTATTTTATTTATCT-TGTA-A
1 -TATTTTATTTATCTAT-TATA
*
22785297 TATTTTTGATTTATCTTATTATT
1 TA-TTTT-ATTTATC-TATTATA
* *
22785320 TTTTTTAATTATCT
1 TATTTTATTTATCT
22785334 GTTAATTTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 25
0.71 0.06 0.23
Matches are distributed among these distances:
16 2 0.03
17 4 0.05
18 6 0.08
19 11 0.14
20 15 0.20
21 26 0.34
22 10 0.13
23 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.65
Consensus pattern (20 bp):
TATTTTATTTATCTATTATA
Found at i:22785271 original size:25 final size:25
Alignment explanation
Indices: 22785243--22785291 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
22785233 AGTTATATAT
22785243 TTATTATTA-TATTATAATTTATCTA
1 TTATTATTATTATT-TAATTTATCTA
*
22785268 TTATTATTATTATTTTATTTATCT
1 TTATTATTATTATTTAATTTATCT
22785292 TGTAATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (25 bp):
TTATTATTATTATTTAATTTATCTA
Found at i:22785289 original size:12 final size:12
Alignment explanation
Indices: 22785065--22785289 Score: 54
Period size: 12 Copynumber: 18.8 Consensus size: 12
22785055 CCAATTTTGC
22785065 TTTTATTT-TGTA
1 TTTTATTTAT-TA
22785077 TTTTA--TATTA
1 TTTTATTTATTA
22785087 TTTTTATTT-TTA
1 -TTTTATTTATTA
22785099 TTTTTATTT-TATA
1 -TTTTATTTAT-TA
**
22785112 TTTT-TTTCCT-
1 TTTTATTTATTA
*
22785122 TTGTATCTTATGTA
1 TTTTAT-TTAT-TA
22785136 -TTTA-TTATT-
1 TTTTATTTATTA
22785145 TATTTATTTATTA
1 T-TTTATTTATTA
* *
22785158 TTACTATGTATTA
1 TT-TTATTTATTA
* * *
22785171 ATATATGTA-TA
1 TTTTATTTATTA
22785182 TCTTTATTTATT-
1 T-TTTATTTATTA
*
22785194 TTTT-TTCTGTTAA
1 TTTTATT-TATT-A
*
22785207 TATTTATATATGTA
1 T-TTTATTTAT-TA
22785221 TTTTATTTATCTA
1 TTTTATTTAT-TA
22785234 GTTATATATTTATTA
1 -TT-T-TATTTATTA
*
22785249 TTATA-TTA-TA
1 TTTTATTTATTA
* *
22785259 ATTTATCTATTA
1 TTTTATTTATTA
22785271 --TTA-TTATTA
1 TTTTATTTATTA
22785280 TTTTATTTAT
1 TTTTATTTAT
22785290 CTTGTAATAT
Statistics
Matches: 160, Mismatches: 22, Indels: 62
0.66 0.09 0.25
Matches are distributed among these distances:
9 5 0.03
10 17 0.11
11 35 0.22
12 51 0.32
13 29 0.18
14 11 0.07
15 5 0.03
16 7 0.04
ACGTcount: A:0.26, C:0.04, G:0.04, T:0.67
Consensus pattern (12 bp):
TTTTATTTATTA
Found at i:22785300 original size:25 final size:28
Alignment explanation
Indices: 22785244--22785300 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 28
22785234 GTTATATATT
*
22785244 TATTATTATATTATAATTTATCTATTAT
1 TATTATTATATTATAATTTATCTATTAA
22785272 TATTATTAT-TT-T-ATTTATCT-TGTAA
1 TATTATTATATTATAATTTATCTAT-TAA
22785297 TATT
1 TATT
22785301 TTTGATTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
24 1 0.04
25 14 0.52
26 1 0.04
27 2 0.07
28 9 0.33
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.63
Consensus pattern (28 bp):
TATTATTATATTATAATTTATCTATTAA
Found at i:22785348 original size:38 final size:43
Alignment explanation
Indices: 22785259--22785348 Score: 100
Period size: 42 Copynumber: 2.1 Consensus size: 43
22785249 TTATATTATA
*
22785259 ATTTATCTATTATTATTATTATTTTATTTATCTTGTAATATTTTT
1 ATTTATC--TTATTATTATTATTTTAATTATCTTGTAATATTTTT
*
22785304 GATTTATCTTATTATT-TT-TTTTAATTATC-TGTTA-ATTTTT
1 -ATTTATCTTATTATTATTATTTTAATTATCTTGTAATATTTTT
22785344 -TTTAT
1 ATTTAT
22785349 TCGTTTGTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
38 5 0.12
40 6 0.14
41 4 0.10
42 10 0.24
43 2 0.05
44 8 0.19
46 7 0.17
ACGTcount: A:0.24, C:0.04, G:0.03, T:0.68
Consensus pattern (43 bp):
ATTTATCTTATTATTATTATTTTAATTATCTTGTAATATTTTT
Found at i:22786230 original size:5 final size:5
Alignment explanation
Indices: 22786206--22786377 Score: 66
Period size: 5 Copynumber: 32.8 Consensus size: 5
22786196 GCTCCAGGTT
* *
22786206 TTTTT TTTTAA TTTTAA TTTTA -TTTA -TTTA -TTTA TTTATT TTTTA
1 TTTTA TTTT-A TTTT-A TTTTA TTTTA TTTTA TTTTA TTT-TA TTTTA
** * * * *
22786251 TTATTA GATTA GGTTTA TTTAA TATTC TTTTA TCTTTA TTTTA TTTTTA
1 TT-TTA TTTTA -TTTTA TTTTA TTTTA TTTTA T-TTTA TTTTA -TTTTA
* * * * *
22786300 TTTTTG TTTTA CTTTTC TTTATT TTTTA TTTTT TTATTT TTTTA TTTTCA
1 -TTTTA TTTTA -TTTTA TTT-TA TTTTA TTTTA TT-TTA TTTTA TTTT-A
*
22786350 CTTTTA TTTTG TTTTA --TTA TTTTA TTTT
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
22786378 CTTTAAATAA
Statistics
Matches: 131, Mismatches: 22, Indels: 28
0.72 0.12 0.15
Matches are distributed among these distances:
3 3 0.02
4 12 0.09
5 61 0.47
6 51 0.39
7 4 0.03
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:22786231 original size:4 final size:4
Alignment explanation
Indices: 22786224--22786252 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
22786214 TAATTTTAAT
22786224 TTTA TTTA TTTA TTTA TTTA TTT- TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
22786253 ATTAGATTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (4 bp):
TTTA
Found at i:22786252 original size:11 final size:11
Alignment explanation
Indices: 22786223--22786347 Score: 53
Period size: 11 Copynumber: 11.2 Consensus size: 11
22786213 TTAATTTTAA
22786223 TTTTATTTATT
1 TTTTATTTATT
22786234 TATTTATTTATT
1 T-TTTATTTATT
22786246 TTTTA-TTATT
1 TTTTATTTATT
**
22786256 AGATTAGGTTTATT
1 -TTTTA--TTTATT
** *
22786270 TAATA-TTCTT
1 TTTTATTTATT
* *
22786280 TTATCTTTATT
1 TTTTATTTATT
22786291 TTATT-TTTATT
1 TT-TTATTTATT
*
22786302 TTTGT-TTTA-C
1 TTT-TATTTATT
*
22786312 TTTTCTTTATT
1 TTTTATTTATT
*
22786323 TTTTATTTTTT
1 TTTTATTTATT
*
22786334 TATTTTTTTATT
1 T-TTTATTTATT
22786346 TT
1 TT
22786348 CACTTTTATT
Statistics
Matches: 88, Mismatches: 15, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
9 1 0.01
10 20 0.23
11 38 0.43
12 21 0.24
13 3 0.03
14 5 0.06
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.75
Consensus pattern (11 bp):
TTTTATTTATT
Found at i:22786318 original size:39 final size:39
Alignment explanation
Indices: 22786275--22786377 Score: 104
Period size: 39 Copynumber: 2.6 Consensus size: 39
22786265 TTATTTAATA
* *
22786275 TTCTTTTATCTTTATTTTATTTTTATTTTTGTTTT-ACTT
1 TTCTTTTATTTTTATTTTATTTTT-TTTTTATTTTCACTT
22786314 TTC-TTTATTTTTTATTTT-TTTATTTTTTTATTTTCACTT
1 TTCTTTTA-TTTTTATTTTATTT-TTTTTTTATTTTCACTT
* *
22786353 TTATTTTGTTTTATTATTTTATTTT
1 TTCTTTT-ATTT-TTATTTTATTTT
22786378 CTTTAAATAA
Statistics
Matches: 53, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
38 16 0.30
39 20 0.38
40 6 0.11
41 8 0.15
42 3 0.06
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.79
Consensus pattern (39 bp):
TTCTTTTATTTTTATTTTATTTTTTTTTTATTTTCACTT
Found at i:22786319 original size:32 final size:31
Alignment explanation
Indices: 22786283--22786382 Score: 93
Period size: 30 Copynumber: 3.2 Consensus size: 31
22786273 TATTCTTTTA
22786283 TCTTTA-TTTTATTTTTATT-TTTGTTTTACTTT
1 TCTTTATTTTTATTTTT-TTATTT-TTTTA-TTT
22786315 TCTTTATTTTTTATTTTTTTATTTTTTTATTT
1 TCTTTA-TTTTTATTTTTTTATTTTTTTATTT
* *
22786347 TC---ACTTTTATTTTGTTTTATTATTTTATTT
1 TCTTTATTTTTA-TTT-TTTTATTTTTTTATTT
22786377 TCTTTA
1 TCTTTA
22786383 AATAAAATCA
Statistics
Matches: 58, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
28 5 0.09
29 4 0.07
30 17 0.29
32 11 0.19
33 8 0.14
34 13 0.22
ACGTcount: A:0.14, C:0.06, G:0.02, T:0.78
Consensus pattern (31 bp):
TCTTTATTTTTATTTTTTTATTTTTTTATTT
Found at i:22786342 original size:38 final size:38
Alignment explanation
Indices: 22786285--22786382 Score: 110
Period size: 38 Copynumber: 2.5 Consensus size: 38
22786275 TTCTTTTATC
* * *
22786285 TTTATTTTATTT-TTATTTTTGTTTT-ACTTTTCTTTATTT
1 TTTATTTT-TTTATT-TTTTTATTTTCACTTTTATTT-TGT
22786324 TTTATTTTTTTATTTTTTTATTTTCACTTTTATTTTGT
1 TTTATTTTTTTATTTTTTTATTTTCACTTTTATTTTGT
*
22786362 TTTATTATTTTATTTTCTTTA
1 TTTATTTTTTTATTTT-TTTA
22786383 AATAAAATCA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
38 29 0.56
39 23 0.44
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (38 bp):
TTTATTTTTTTATTTTTTTATTTTCACTTTTATTTTGT
Found at i:22786463 original size:57 final size:56
Alignment explanation
Indices: 22786395--22786834 Score: 454
Period size: 58 Copynumber: 7.7 Consensus size: 56
22786385 TAAAATCAAA
* *
22786395 AAAAAATGTTTTTGGGGAAAAGTTGAAAGTATCAACTTTTCTTAAAAATAAATTTTC
1 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTAAAAATAAATTTTC
* *
22786452 AAAAAAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
1 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTT-CTTAAAAATAAATTTTC
* * * ** * *
22786509 AAAAATGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCC
1 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTT-TCTTAAAAATAAA-TTTTC
** * * *
22786567 AAAAAATATTTTTG-GAAAAAAATTGAAAGTATTAATTTTCCTTAAAAATAAATTTT-
1 AAAAAAGGTTTTTGAG-GAAAAGTTGAAAGTATCAATTTT-CTTAAAAATAAATTTTC
* * * * * **
22786623 TAAAACGGTTTTTGAGGAAAAGTTGAAAGTATCAAATTTCTTCGAAATTAAGGTTTC
1 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTT-AAAAATAAATTTTC
** * * *
22786680 AAAAAAATATTTTTGGGGAAAAATTGAAATTATCAATTTTCCTTAAAAATAAATTTTC
1 -AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTT-CTTAAAAATAAATTTTC
** * *
22786738 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTC
1 AAAAAA-GGTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTTAAAAATAAATTTTC
* *
22786796 AAAAGA-TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
1 AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTC
22786835 CTCGAGATTA
Statistics
Matches: 311, Mismatches: 60, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
55 8 0.03
56 69 0.22
57 103 0.33
58 124 0.40
59 7 0.02
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (56 bp):
AAAAAAGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTAAAAATAAATTTTC
Found at i:22786533 original size:114 final size:113
Alignment explanation
Indices: 22786396--22786836 Score: 586
Period size: 114 Copynumber: 3.9 Consensus size: 113
22786386 AAAATCAAAA
* ** * * **
22786396 AAAAAT-GTTTTTGGGGAAAAGTTGAAAGTATCAACTTTTCTTAAAAATAAATTTTCAAAAAAGG
1 AAAAATGGTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTCGAAATTAAAGTTTCAAAAAATA
22786460 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
65 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
* *
22786509 AAAAATGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCCAAAAAAT
1 AAAAATGGTTTTTGAGGAAAAGTTGAAAGTATCAATTT-TCTCGAAATTAAAGTTT-CAAAAAAT
* *
22786574 ATTTTTG-GAAAAAAATTGAAAGTATTAATTTTCCTTAAAAATAAATTTTT
64 ATTTTTGAG-AAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
* * *
22786624 -AAAACGGTTTTTGAGGAAAAGTTGAAAGTATCAAATTTCTTCGAAATTAAGGTTTCAAAAAAAT
1 AAAAATGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTC-TCGAAATTAAAGTTTC-AAAAAAT
* * *
22786688 ATTTTTGGGGAAAAA-TTGAAATTATCAATTTTCCTTAAAAATAAATTTTCA
64 ATTTTT-GAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-T
* *
22786739 AAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAGAT-
1 AAAAATGGTTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCTCGAAATTAAAGTTTCAAAAAATA
*
22786803 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
65 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCT
22786837 CGAGATTAAA
Statistics
Matches: 290, Mismatches: 26, Indels: 23
0.86 0.08 0.07
Matches are distributed among these distances:
113 17 0.06
114 156 0.54
115 64 0.22
116 49 0.17
117 4 0.01
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (113 bp):
AAAAATGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTCGAAATTAAAGTTTCAAAAAATAT
TTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTT
Found at i:22786597 original size:58 final size:58
Alignment explanation
Indices: 22786395--22786890 Score: 438
Period size: 57 Copynumber: 8.7 Consensus size: 58
22786385 TAAAATCAAA
* * ** * *
22786395 AAAAAATGTTTTTGGGGAAAAGTTGAAAGTATCAACTTTT-CTTAAAAATAAA-TTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTCGAAATTAAAGTTTCC
** * ** * *
22786452 AAAAAAGGTTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTT-T
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
* * * *
22786508 TAAAAATGGTTTTTGAGGGAAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCC
1 AAAAAAT-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
* * * ** * *
22786567 AAAAAATATTTTTG-GAAAAAAATTGAAAGTATTAATTTTCCTTAAAAATAAA-TTT-T
1 AAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
* *** * * * *
22786623 TAAAACGGTTTTTGAGGAAAAGTTGAAAGTATCAAATTTCTTCGAAATTAAGGTTTCA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
* * * ** * *
22786681 AAAAAATATTTTTGGGGAAAAATTGAAATTATCAATTTTCCTTAAAAATAAA-TTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
** *
22786738 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTT-C
1 AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
* * * *
22786796 AAAAGAT-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAGATTAAAATTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
* * *
22786853 AAAAAATATTTTAG-GGAAAAGTTAAAAGTGTCAATTTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
22786891 TCCTGCACAA
Statistics
Matches: 355, Mismatches: 72, Indels: 24
0.79 0.16 0.05
Matches are distributed among these distances:
56 91 0.26
57 131 0.37
58 124 0.35
59 9 0.03
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCC
Found at i:22786894 original size:172 final size:170
Alignment explanation
Indices: 22786395--22786890 Score: 534
Period size: 172 Copynumber: 2.9 Consensus size: 170
22786385 TAAAATCAAA
* * *
22786395 AAAAAATGTTTTTGGGGAAAAGTTGAAAGTATCAACTTTTCTTAAAAATAAATTTTCAAAAAAGG
1 AAAAAAGGTTTTT-GGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAGA-G
* ** * * *
22786460 TTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTT-TTAAAAATGGTTTTTG
64 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTCTAAAAAAT--ATTTT-
* * *
22786523 AGGG-AAAGTTGAAAGTATCAATTTCCCTCGAAATTAAAGTTTCC
126 AGGGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCC
** * * * * *
22786567 AAAAAATATTTTTGGAAAAAAATTGAAAGTATTAATTTTCCTTAAAAATAAATTTTTAAAACG-G
1 AAAAAAGGTTTTTGG-GAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAA-GAG
* * ** * *
22786631 TTTTTGAGGAAAAGTTGAAAGTATCAAATTTCTTCGAAATTAAGGTTTCAAAAAAATATTTTTGG
64 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTCTAAAAAATA-TTTTAG
* * * *
22786696 GGAAAAATTGAAATTATCAATTTTCCTTAAAAATAAA-TTTTC
128 GGAAAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCC
** * * *
22786738 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAGTTTCAAAAGAT
1 AAAAAA-GGTTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAGAG
*
22786803 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAGATTAAAATTTCTAAAAAATATTTTAGG
64 TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTCTAAAAAATATTTTAGG
* *
22786868 GAAAAGTTAAAAGTGTCAATTTT
129 GAAAAGTTGAAAGTATCAATTTT
22786891 TCCTGCACAA
Statistics
Matches: 265, Mismatches: 50, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
171 77 0.29
172 181 0.68
173 7 0.03
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (170 bp):
AAAAAAGGTTTTTGGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAGAGTT
TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAATTTCTAAAAAATATTTTAGGGA
AAAGTTGAAAGTATCAATTTTCCTCAAAAATAAAGTTTCC
Found at i:22792155 original size:236 final size:236
Alignment explanation
Indices: 22791538--22792398 Score: 1274
Period size: 236 Copynumber: 3.7 Consensus size: 236
22791528 TATCCCCTAA
* *
22791538 TTATTGAAGGTGACTTTAATTATAAAATACCTTCAATATACCATGATGGTAATGGAAGGCATTTA
1 TTATTGAAGGCGACTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
* * *
22791603 ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACTGAAGGCGTTTGTTATAA
66 ATAGAAAAGACACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATAA
* * *
22791668 TTGAAAATGCCTTCAAAATTTTCCTACAAAAATCTTTTGGGAATTAATAAAGTTGACTTGTATTG
131 CTGAAAATGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGCTGACTTGTATTG
* * *
22791733 AAACATGCCTTCTATATTGAGGCAGATAAATTGCATCACTA
196 AAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTG
* * * * *
22791774 TTATTGAAGGCGGCTTTGATTATAAAATACCTT-TATATCCCACGATGGTAATGAAAGGCATTTA
1 TTATTGAAGGCGACTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
* * *
22791838 ATAGAAAAGACGCCTTCAGTATACCTTTAAATTTAATAATCTATTACCAAAGGCATTTGTTATAA
66 ATAGAAAAGACACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATAA
** * *
22791903 CTGAAAACACCTTCAAAATTTTCCCATAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTATTG
131 CTGAAAATGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGCTGACTTGTATTG
* * *
22791968 AAACATGCCTTTTATACAGAGGCAAACAAATTGCATCACTG
196 AAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTG
* * * * *
22792009 TTATTAAAGGTGGCTTTAATTATAAAACACCTTTAATATACCACGATGGTAATGGAAGGCATTTA
1 TTATTGAAGGCGACTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
* **
22792074 ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATATATTACCGAAGGCATTTGTTATAA
66 ATAGAAAAGACACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATAA
* * * * *
22792139 TTGAAAATGCCTTCAAAATTTTTCCACAAAAATCTTTTAGGAATTAATAAAGCCGACTTGTACTG
131 CTGAAAATGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGCTGACTTGTATTG
* *
22792204 AAACATGCCTTCTATATAGATGCAGACATATTGCATCACTG
196 AAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTG
* * *
22792245 TTATTGAAGGCGACTTTGATTATAAAATGCCTTCAATATGCCACGATGGTAATGGAAGGCATTTA
1 TTATTGAAGGCGACTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
** * *
22792310 ATAGAAAAGATGCCTTTAGTATACCTTTAAATTTAATAATCCATTACCGAAGGTATTTGTTATAA
66 ATAGAAAAGACACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATAA
*
22792375 CTGAAAATGCCTTTAAAATTTTCC
131 CTGAAAATGCCTTCAAAATTTTCC
22792399 TTCCATATAT
Statistics
Matches: 556, Mismatches: 68, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
235 209 0.38
236 347 0.62
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (236 bp):
TTATTGAAGGCGACTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
ATAGAAAAGACACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATAA
CTGAAAATGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGCTGACTTGTATTG
AAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTG
Found at i:22792427 original size:471 final size:471
Alignment explanation
Indices: 22791538--22792454 Score: 1392
Period size: 471 Copynumber: 1.9 Consensus size: 471
22791528 TATCCCCTAA
* * *
22791538 TTATTGAAGGTGACTTTAATTATAAAATACCTTCAATATACCATGATGGTAATGGAAGGCATTTA
1 TTATTAAAGGTGACTTTAATTATAAAACACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
* * *
22791603 ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACTGAAGGCGTTTGTTATAA
66 ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATACATTACCGAAGGCATTTGTTATAA
* ** *
22791668 TTGAAAATGCCTTCAAAATTTTCCTACAAAAATCTTTTGGGAATTAATAAAGTTGACTTGTATTG
131 TTGAAAATGCCTTCAAAATTTTCCTACAAAAATCTTTTAGGAATTAATAAAGCCGACTTGTACTG
* * *
22791733 AAACATGCCTTCTATATTGAGGCAGATAAATTGCATCACTATTATTGAAGGCGGCTTTGATTATA
196 AAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTATTATTGAAGGCGACTTTGATTATA
*
22791798 AAATACCTTTATATCCCACGATGGTAATGAAAGGCATTTAATAGAAAAGACGCCTTCAGTATACC
261 AAATACCTTAATATCCCACGATGGTAATGAAAGGCATTTAATAGAAAAGACGCCTTCAGTATACC
*
22791863 TTTAAATTTAATAATCTATTACCAAAGGCATTTGTTATAACTGAAAACACCTTCAAAATTTTCCC
326 TTTAAATTTAATAATCCATTACCAAAGGCATTTGTTATAACTGAAAACACCTTCAAAATTTTCCC
* * * *
22791928 ATAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTA-TTGAAACATGCCTTTTATACAGAGGCA
391 ATAAAAATATTTTGAGAATTAATAAAGGTGACTTCTACTTGAAA-ATGCCTTCTATACAGAGGCA
22791992 AACAAATTGCATCACTG
455 AACAAATTGCATCACTG
* *
22792009 TTATTAAAGGTGGCTTTAATTATAAAACACCTTTAATATACCACGATGGTAATGGAAGGCATTTA
1 TTATTAAAGGTGACTTTAATTATAAAACACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
*
22792074 ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATATATTACCGAAGGCATTTGTTATAA
66 ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATACATTACCGAAGGCATTTGTTATAA
22792139 TTGAAAATGCCTTCAAAATTTTTCC-ACAAAAATCTTTTAGGAATTAATAAAGCCGACTTGTACT
131 TTGAAAATGCCTTCAAAA-TTTTCCTACAAAAATCTTTTAGGAATTAATAAAGCCGACTTGTACT
* * *
22792203 GAAACATGCCTTCTATATAGATGCAGACATATTGCATCACTGTTATTGAAGGCGACTTTGATTAT
195 GAAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTATTATTGAAGGCGACTTTGATTAT
* * * * *
22792268 AAAATGCCTTCAATATGCCACGATGGTAATGGAAGGCATTTAATAGAAAAGATGCCTTTAGTATA
260 AAAATACCTT-AATATCCCACGATGGTAATGAAAGGCATTTAATAGAAAAGACGCCTTCAGTATA
* * ** *
22792333 CCTTTAAATTTAATAATCCATTACCGAAGGTATTTGTTATAACTGAAAATGCCTTTAAAATTTT-
324 CCTTTAAATTTAATAATCCATTACCAAAGGCATTTGTTATAACTGAAAACACCTTCAAAATTTTC
* ** * * * *
22792397 CCTTCCATATATTTTCGAG-ATTATTAAAGGTGTCTTCTACTTTAAAATGCCTTCTATA
389 CCATAAAAATATTTT-GAGAATTAATAAAGGTGACTTCTACTTGAAAATGCCTTCTATA
22792455 AACCGCCACA
Statistics
Matches: 400, Mismatches: 42, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
471 280 0.70
472 120 0.30
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.34
Consensus pattern (471 bp):
TTATTAAAGGTGACTTTAATTATAAAACACCTTCAATATACCACGATGGTAATGGAAGGCATTTA
ATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATACATTACCGAAGGCATTTGTTATAA
TTGAAAATGCCTTCAAAATTTTCCTACAAAAATCTTTTAGGAATTAATAAAGCCGACTTGTACTG
AAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACTATTATTGAAGGCGACTTTGATTATA
AAATACCTTAATATCCCACGATGGTAATGAAAGGCATTTAATAGAAAAGACGCCTTCAGTATACC
TTTAAATTTAATAATCCATTACCAAAGGCATTTGTTATAACTGAAAACACCTTCAAAATTTTCCC
ATAAAAATATTTTGAGAATTAATAAAGGTGACTTCTACTTGAAAATGCCTTCTATACAGAGGCAA
ACAAATTGCATCACTG
Found at i:22799566 original size:34 final size:34
Alignment explanation
Indices: 22799528--22799593 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
22799518 ATTGTAGTGG
*
22799528 TCAAACTATATATAGAATTATTAAAGTAATTCGA
1 TCAAACAATATATAGAATTATTAAAGTAATTCGA
*
22799562 TCAAACAATATGTAGAATTATTAAAGTAATTC
1 TCAAACAATATATAGAATTATTAAAGTAATTC
22799594 TAGGCCAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.47, C:0.09, G:0.09, T:0.35
Consensus pattern (34 bp):
TCAAACAATATATAGAATTATTAAAGTAATTCGA
Found at i:22803562 original size:23 final size:23
Alignment explanation
Indices: 22803530--22803576 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
22803520 TTGCTTTTCC
22803530 TTTTGCTTTTTTTTGTAAACATT
1 TTTTGCTTTTTTTTGTAAACATT
* *
22803553 TTTTGTTTTTTTTTTTAAACATT
1 TTTTGCTTTTTTTTGTAAACATT
22803576 T
1 T
22803577 GACTCCACCT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.70
Consensus pattern (23 bp):
TTTTGCTTTTTTTTGTAAACATT
Found at i:22804052 original size:33 final size:33
Alignment explanation
Indices: 22803983--22804058 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
22803973 TTTTCTTTTT
* * * *
22803983 TTTTATCTATTAATATTTTTATTATTTATCTGC
1 TTTTATTTATTAATATTATTATTATCTATCTCC
*
22804016 TTTTATTTATTATTATTATTATTTATCTAT-TCC
1 TTTTATTTATTAATATTATTA-TTATCTATCTCC
22804049 TTTTATTTAT
1 TTTTATTTAT
22804059 CTTTTTTTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.81
34 7 0.19
ACGTcount: A:0.24, C:0.08, G:0.01, T:0.67
Consensus pattern (33 bp):
TTTTATTTATTAATATTATTATTATCTATCTCC
Found at i:22804059 original size:17 final size:16
Alignment explanation
Indices: 22804015--22804078 Score: 62
Period size: 17 Copynumber: 4.0 Consensus size: 16
22804005 TATTTATCTG
22804015 CTTTTATTTAT-TATT
1 CTTTTATTTATCTATT
*
22804030 ATTATTATTTATCTATT
1 CTT-TTATTTATCTATT
22804047 CCTTTTATTTATCT-TT
1 -CTTTTATTTATCTATT
*
22804063 -TTTTTTGTTATCTATT
1 CTTTTAT-TTATCTATT
22804079 AATATATTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
14 5 0.12
15 8 0.20
16 12 0.29
17 14 0.34
18 2 0.05
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (16 bp):
CTTTTATTTATCTATT
Found at i:22804080 original size:85 final size:79
Alignment explanation
Indices: 22803937--22804089 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 79
22803927 GGGCTTTTAT
* * *
22803937 TTTTATTTTTATTATTTAATATATCTATCTTTTTCTTTTTCTTTTTTTTTATCTATTAATATTTT
1 TTTTATTTTTATTATTTAATATATCTATCCTTTTATTTTTCTTTTTTTTTATCTATTAATATATT
22804002 TATTATTTATCTGC
66 TATTATTTATCTGC
* * *
22804016 TTTTATTTATTATTATTATTATTTATCTATTCCTTTTATTTATCTTTTTTTTTGTTATCTATTAA
1 TTTTATTT-TTATTATT-TAATATATCTA-TCCTTTTATTT-T-TCTTTTTTT-TTATCTATTAA
22804081 TATATTTAT
60 TATATTTAT
22804090 CTTTTTATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
79 8 0.13
80 8 0.13
81 9 0.15
82 9 0.15
83 1 0.02
84 8 0.13
85 19 0.31
ACGTcount: A:0.22, C:0.08, G:0.01, T:0.69
Consensus pattern (79 bp):
TTTTATTTTTATTATTTAATATATCTATCCTTTTATTTTTCTTTTTTTTTATCTATTAATATATT
TATTATTTATCTGC
Found at i:22804999 original size:5 final size:5
Alignment explanation
Indices: 22804985--22805033 Score: 64
Period size: 5 Copynumber: 9.4 Consensus size: 5
22804975 GTTTAATACT
22804985 TTTTA TTTTTA TTTTA TTTT- TCTTTA TTTTTA TTTTA TTTTA TTTTA
1 TTTTA -TTTTA TTTTA TTTTA T-TTTA -TTTTA TTTTA TTTTA TTTTA
22805032 TT
1 TT
22805034 ATTTTCTTTA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
4 1 0.03
5 29 0.73
6 9 0.22
7 1 0.03
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:22805010 original size:21 final size:21
Alignment explanation
Indices: 22804985--22805033 Score: 82
Period size: 21 Copynumber: 2.3 Consensus size: 21
22804975 GTTTAATACT
22804985 TTTTATTTTTATTTTATTTT-
1 TTTTATTTTTATTTTATTTTA
22805005 TCTTTATTTTTATTTTATTTTA
1 T-TTTATTTTTATTTTATTTTA
22805027 TTTTATT
1 TTTTATT
22805034 ATTTTCTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.04
21 25 0.93
22 1 0.04
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTATTTTTATTTTATTTTA
Found at i:22805107 original size:58 final size:58
Alignment explanation
Indices: 22805043--22805330 Score: 336
Period size: 58 Copynumber: 4.9 Consensus size: 58
22805033 TATTTTCTTT
22805043 AAATAAGCTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAGCTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
** *
22805101 AAATAAGCTTTCTAAAAAATATTTTTGAGGAAAGGTTGAAAGTATCAATTTTCCTTGA
1 AAATAAGCTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* *
22805159 AAATAAGCTTTCTAAAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTCTCCTTAA
1 AAATAAGC-TT-T--AAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGA
** * * *
22805221 AAATAAG-TTT-TCAAAAATGAGTTTTTGAGGAAAAGTTGAAAATATCAAATTTCC-TCA
1 AAATAAGCTTTAAAAAAAAT-A-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* *
22805278 AAATTAAAGTTTTCAAAAAAATA-TTTT-AGGAAAAAGTTGAAAGTATCAATTTT
1 AAA-T-AAGCTTTAAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTT
22805331 TCCTGTACAA
Statistics
Matches: 199, Mismatches: 18, Indels: 26
0.82 0.07 0.11
Matches are distributed among these distances:
56 6 0.03
57 9 0.05
58 115 0.58
59 8 0.04
60 7 0.04
61 8 0.04
62 46 0.23
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
AAATAAGCTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
Found at i:22805218 original size:120 final size:117
Alignment explanation
Indices: 22805051--22805328 Score: 361
Period size: 120 Copynumber: 2.4 Consensus size: 117
22805041 TTAAATAAGC
* *
22805051 TTTAAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTA
1 TTTAAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTCTCCTTAAAAATAAG-TTT-TA
* * * *
22805115 AAAAAT-A-TTTTTGAGGAAAGGTTGAAAGTATCAATTTTCCTTGAAAA-T-AAGCT
63 AAAAATGAGTTTTTGAGGAAAAGTTGAAAATATCAAATTTCC-TCAAAATTAAAG-T
*
22805168 TTCTAAAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTCTCCTTAAAAATAAGTTTTC
1 TT-T--AAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTCTCCTTAAAAATAAGTTTTA
22805233 AAAAATGAGTTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTCAAAATTAAAGT
63 AAAAATGAGTTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTCAAAATTAAAGT
* *
22805288 TTTCAAAAAAATA-TTTTAGGAAAAAGTTGAAAGTATCAATT
1 TTTAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATT
22805329 TTTCCTGTAC
Statistics
Matches: 144, Mismatches: 9, Indels: 17
0.85 0.05 0.10
Matches are distributed among these distances:
116 27 0.19
117 11 0.08
118 8 0.06
119 12 0.08
120 83 0.58
121 3 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (117 bp):
TTTAAAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTCTCCTTAAAAATAAGTTTTAAAA
AATGAGTTTTTGAGGAAAAGTTGAAAATATCAAATTTCCTCAAAATTAAAGT
Found at i:22808501 original size:8 final size:8
Alignment explanation
Indices: 22808488--22808550 Score: 51
Period size: 8 Copynumber: 8.1 Consensus size: 8
22808478 AAGATGATTA
22808488 AAAAAAAG
1 AAAAAAAG
22808496 AAAAAATAG
1 AAAAAA-AG
22808505 -AAAAAA-
1 AAAAAAAG
*
22808511 AAAGAAAG
1 AAAAAAAG
*
22808519 -AAAGAAG
1 AAAAAAAG
*
22808526 AAAAAATG
1 AAAAAAAG
* *
22808534 AGAAAATG
1 AAAAAAAG
22808542 AAAAAAAG
1 AAAAAAAG
22808550 A
1 A
22808551 TATTCAAATT
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
7 11 0.26
8 30 0.70
9 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (8 bp):
AAAAAAAG
Found at i:22808509 original size:19 final size:19
Alignment explanation
Indices: 22808487--22808548 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
22808477 AAAGATGATT
22808487 AAAAAAAAGAAAAAATAGA
1 AAAAAAAAGAAAAAATAGA
*
22808506 AAAAAAAAGAAAGAA-AGA
1 AAAAAAAAGAAAAAATAGA
* *
22808524 AGAAAAAATGAGAAAAT-GA
1 A-AAAAAAAGAAAAAATAGA
22808543 AAAAAA
1 AAAAAA
22808549 GATATTCAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
18 9 0.24
19 28 0.76
ACGTcount: A:0.81, C:0.00, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAAAAAAGAAAAAATAGA
Found at i:22809676 original size:22 final size:22
Alignment explanation
Indices: 22809651--22809709 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
22809641 GAATATTTTG
*
22809651 ATGAGAATTTTTGAGAACTC-AA
1 ATGAGAATCTTTGAG-ACTCAAA
**
22809673 ATGAGAATCTTTGAGTTTCAAA
1 ATGAGAATCTTTGAGACTCAAA
22809695 ATGAGAATCTTTGAG
1 ATGAGAATCTTTGAG
22809710 GAGTGAAACT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 2 0.06
22 31 0.94
ACGTcount: A:0.37, C:0.08, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGAGAATCTTTGAGACTCAAA
Found at i:22810218 original size:41 final size:40
Alignment explanation
Indices: 22810173--22810260 Score: 70
Period size: 41 Copynumber: 2.1 Consensus size: 40
22810163 ATGATTATCA
* * **
22810173 AGGAGCAATTTACTTTTCAAAGTTTTGGTGCCTCTGTTTAG
1 AGGAGCCATTTACTTTTCAAAGTTTT-GAGCCTCTAATTAG
* * * *
22810214 AGGAGCAATTTA-TTTTCCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCCATTTACTTTT-CAAAGTT-TTGAGCCTCTAATTAG
22810255 AGGAGC
1 AGGAGC
22810261 AAAGAGGAGC
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
40 4 0.09
41 38 0.88
42 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (40 bp):
AGGAGCCATTTACTTTTCAAAGTTTTGAGCCTCTAATTAG
Found at i:22810261 original size:41 final size:41
Alignment explanation
Indices: 22810173--22810601 Score: 309
Period size: 42 Copynumber: 10.1 Consensus size: 41
22810163 ATGATTATCA
* * *
22810173 AGGAGCAATTTACTTTT-CAAAGTT-TTGGTGCCTCTGTTTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTT-GAGCCTCT-ATTAG
* * *
22810214 AGGAGCAATTTA-TTTTCCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCTCTA-TTAG
** *
22810255 AGGAGCAAAGAGGAGCAATTTAC-TTTCCAAAAGTTGAGGTGCCTCTATTTAG
1 AGGAGC---------C-ATTTACTTTTCC-AAAGTTGTTGAGCCTCTA-TTAG
* * *
22810307 AGGAGCAATTTAC-TTTCCAAA--AGTTAAGCCTCTAATTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCTCT-ATTAG
22810346 AGGAGCCATTTACTTTT-CAAAGTTGTTGAGCCTCTGATTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCTCT-ATTAG
* * * *
22810387 ATGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTAATTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCTCT-ATTAG
* * *
22810429 ATGAGCCATTTACTTTT-CAAAGTTGTTGAGCCTCCGATTAA
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCT-CTATTAG
* * *
22810470 AGGAGCCATTTATTTTTCCAAAGTCGTTGAGCCTCCGATTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCT-CTATTAG
* * *
22810512 AGGAGCCATTTATTTTTCCAAAATCGTTGAGCCTCTGATTAG
1 AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCTCT-ATTAG
* * * * *
22810554 AGAAGCCTTGTTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAG
1 AGGAGCC--ATTTACTTTTCCAAAGTTGTTGAGCCTCT-ATTAG
22810598 AGGA
1 AGGA
22810602 TCTTTGTTTA
Statistics
Matches: 330, Mismatches: 33, Indels: 47
0.80 0.08 0.11
Matches are distributed among these distances:
39 27 0.08
40 8 0.02
41 105 0.32
42 117 0.35
44 35 0.11
51 10 0.03
52 28 0.08
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (41 bp):
AGGAGCCATTTACTTTTCCAAAGTTGTTGAGCCTCTATTAG
Found at i:22810306 original size:52 final size:51
Alignment explanation
Indices: 22810212--22810314 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 51
22810202 GCCTCTGTTT
* *
22810212 AGAGGAGCAATTTATTTTCCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
1 AGAGGAGCAATTTACTTTCCAAAGTTGAGGTGCCTCTATTTAGAGGAGCAA
22810263 AGAGGAGCAATTTACTTTCCAAAAGTTGAGGTGCCTCTATTTAGAGGAGCAA
1 AGAGGAGCAATTTACTTTCC-AAAGTTGAGGTGCCTCTATTTAGAGGAGCAA
22810315 TTTACTTTCC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 19 0.39
52 30 0.61
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (51 bp):
AGAGGAGCAATTTACTTTCCAAAGTTGAGGTGCCTCTATTTAGAGGAGCAA
Found at i:22810438 original size:83 final size:82
Alignment explanation
Indices: 22810333--22810601 Score: 369
Period size: 83 Copynumber: 3.2 Consensus size: 82
22810323 CCAAAAGTTA
22810333 AGCCTCTAATTAGAGGAGCCATTTACTTTTCAAAGTTGTTGAGCCTCTGATTAGATGAGCCATTT
1 AGCCTCTAATTAGAGGAGCCATTTACTTTTCAAAGTTGTTGAGCCTCTGATTAGA-GAGCCATTT
22810398 ATTTTTTCAAAGTCGTTG
65 ATTTTTTCAAAGTCGTTG
* * *
22810416 AGCCTCTAATTAGATGAGCCATTTACTTTTCAAAGTTGTTGAGCCTCCGATTAAAGGAGCCATTT
1 AGCCTCTAATTAGAGGAGCCATTTACTTTTCAAAGTTGTTGAGCCTCTGATTAGA-GAGCCATTT
*
22810481 ATTTTTCCAAAGTCGTTG
65 ATTTTTTCAAAGTCGTTG
** * * *
22810499 AGCCTCCGATTAGAGGAGCCATTTATTTTTCCAAAATCGTTGAGCCTCTGATTAGAGAAGCC-TT
1 AGCCTCTAATTAGAGGAGCCATTTACTTTT-CAAAGTTGTTGAGCCTCTGATTAGAG-AGCCATT
*
22810563 GTTTATTTTTCAAAAGTCGTTG
64 -TAT-TTTTTC-AAAGTCGTTG
*
22810585 AGCCTCTGATTAGAGGA
1 AGCCTCTAATTAGAGGA
22810602 TCTTTGTTTA
Statistics
Matches: 165, Mismatches: 16, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
83 107 0.65
84 27 0.16
85 5 0.03
86 26 0.16
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (82 bp):
AGCCTCTAATTAGAGGAGCCATTTACTTTTCAAAGTTGTTGAGCCTCTGATTAGAGAGCCATTTA
TTTTTTCAAAGTCGTTG
Found at i:22811372 original size:25 final size:24
Alignment explanation
Indices: 22811324--22811373 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
22811314 TCAGTGGGAA
* **
22811324 TTTTTTAGAAATTTTTGGTGAATT
1 TTTTTTAAAAATTTTTGGAAAATT
22811348 TTTTTCTAAAAATTTTTGGAAAATT
1 TTTTT-TAAAAATTTTTGGAAAATT
22811373 T
1 T
22811374 CCAGATTTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.30, C:0.02, G:0.12, T:0.56
Consensus pattern (24 bp):
TTTTTTAAAAATTTTTGGAAAATT
Found at i:22811896 original size:23 final size:23
Alignment explanation
Indices: 22811870--22811918 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
22811860 ATTTTTCATT
* *
22811870 TTATT-TTTTTATATATTTATTTA
1 TTATTATTATTAT-TATTTATTGA
22811893 TTATTATTATTATTATTTATTGA
1 TTATTATTATTATTATTTATTGA
22811916 TTA
1 TTA
22811919 GATTAGAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (23 bp):
TTATTATTATTATTATTTATTGA
Found at i:22811923 original size:19 final size:19
Alignment explanation
Indices: 22811886--22811923 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22811876 TTTTATATAT
*
22811886 TTATTTATTATTATTATTA
1 TTATTTATTATTATGATTA
22811905 TTATTTATTGATTA-GATTA
1 TTATTTATT-ATTATGATTA
22811924 GAATTGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTATTTATTATTATGATTA
Found at i:22811955 original size:5 final size:5
Alignment explanation
Indices: 22811939--22811993 Score: 51
Period size: 6 Copynumber: 10.4 Consensus size: 5
22811929 GTTTAATACT
22811939 TTTTA -TTT- TTTTA TTTTTA TTTTTA TTTTCA TTTTCA TTTTCA TTTTA
1 TTTTA TTTTA TTTTA -TTTTA -TTTTA TTTT-A TTTT-A TTTT-A TTTTA
22811987 TTTTA TT
1 TTTTA TT
22811994 ATTTTCTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
4 6 0.13
5 12 0.26
6 28 0.61
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:22811955 original size:6 final size:6
Alignment explanation
Indices: 22811946--22811990 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
22811936 ACTTTTTATT
* * *
22811946 TTTTTA TTTTTA TTTTTA TTTTCA TTTTCA TTTTCA -TTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
22811991 ATTATTTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 4 0.11
6 32 0.89
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:22811963 original size:12 final size:12
Alignment explanation
Indices: 22811946--22811990 Score: 65
Period size: 12 Copynumber: 3.8 Consensus size: 12
22811936 ACTTTTTATT
*
22811946 TTTTTATTTTTA
1 TTTTTATTTTCA
22811958 TTTTTATTTTCA
1 TTTTTATTTTCA
*
22811970 TTTTCATTTTCA
1 TTTTTATTTTCA
22811982 -TTTTATTTT
1 TTTTTATTTT
22811991 ATTATTTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 8 0.27
12 22 0.73
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTATTTTCA
Found at i:22812088 original size:61 final size:58
Alignment explanation
Indices: 22812003--22812234 Score: 283
Period size: 58 Copynumber: 3.9 Consensus size: 58
22811993 TATTTTCTTT
*
22812003 AAATAAGCTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGA
1 AAATAAG-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* *
22812062 AAATAAGCTTTCTAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTCTCCTT-A
1 AAATAAG-TTTC--AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* ***
22812122 GAAACAAGTTTTCAAAAGTGA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
1 -AAATAAG-TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
* *
22812181 AATTAAAAGTTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AA--ATAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
22812235 CTGTACAAAA
Statistics
Matches: 151, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
57 3 0.02
58 69 0.46
59 22 0.15
60 5 0.03
61 52 0.34
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (58 bp):
AAATAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA
Found at i:22813553 original size:13 final size:13
Alignment explanation
Indices: 22813528--22813560 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
22813518 AGAAAACTTT
*
22813528 TTTTTC-TCTTTC
1 TTTTTCTTCCTTC
22813540 TTTTTCTTCCTTC
1 TTTTTCTTCCTTC
22813553 TTTTTCTT
1 TTTTTCTT
22813561 TAAATTTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTCTTCCTTC
Found at i:22816722 original size:35 final size:35
Alignment explanation
Indices: 22816672--22816750 Score: 122
Period size: 35 Copynumber: 2.3 Consensus size: 35
22816662 CATAAGGATA
* * *
22816672 CATGTACTACCTATTAAGATGCCTGAAATGTGATG
1 CATGTACTACATATTAAGATACCTGAAATGTAATG
*
22816707 CATGTAGTACATATTAAGATACCTGAAATGTAATG
1 CATGTACTACATATTAAGATACCTGAAATGTAATG
22816742 CATGTACTA
1 CATGTACTA
22816751 TTTTATTATG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (35 bp):
CATGTACTACATATTAAGATACCTGAAATGTAATG
Found at i:22818131 original size:20 final size:22
Alignment explanation
Indices: 22818106--22818147 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
22818096 TAAAATGACC
22818106 TTAATTTT-ATTATT-TAAAAT
1 TTAATTTTCATTATTGTAAAAT
*
22818126 TTAATTTTCCTTATTGTAAAAT
1 TTAATTTTCATTATTGTAAAAT
22818148 AACATCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 8 0.42
21 5 0.26
22 6 0.32
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (22 bp):
TTAATTTTCATTATTGTAAAAT
Found at i:22818443 original size:16 final size:16
Alignment explanation
Indices: 22818422--22818453 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
22818412 TAAAAAAATT
22818422 TTATTAGTTTTTTTAA
1 TTATTAGTTTTTTTAA
22818438 TTATTAGTTTTTTTAA
1 TTATTAGTTTTTTTAA
22818454 AAAAAGAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (16 bp):
TTATTAGTTTTTTTAA
Found at i:22820275 original size:12 final size:12
Alignment explanation
Indices: 22820258--22820283 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22820248 AACGGGTCCA
22820258 AAAAGGTTGATG
1 AAAAGGTTGATG
22820270 AAAAGGTTGATG
1 AAAAGGTTGATG
22820282 AA
1 AA
22820284 GGGAACAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.00, G:0.31, T:0.23
Consensus pattern (12 bp):
AAAAGGTTGATG
Found at i:22820568 original size:5 final size:5
Alignment explanation
Indices: 22820558--22820583 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22820548 TGTTGGTTTC
22820558 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
22820584 TAATAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:22821174 original size:59 final size:58
Alignment explanation
Indices: 22821064--22821412 Score: 384
Period size: 59 Copynumber: 5.8 Consensus size: 58
22821054 TTTGTACAAG
* * *
22821064 GGAAAATTGATACTTTTAACTTTT-CTCCAAAATATTTTTTTTGAAATTTTAATTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAAATTTAATTTCAA
* *
22821122 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAACTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT-GAAAATTTAATTTCAA
* * * *
22821181 GGAAAATTGATACTTTCAACTTTTTCTCAAAAAAAAAAAACCTTTTTTCTGAAAATTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC-----AAAAATA--TTTTTT-TGAAAATTTAATTTCA
22821246 A
58 A
* *
22821247 GAAAAATTGATACTTTCAACTTTT-CTCCAAAAATA-TTTTTTGAAAACTTTTAATTTCGA
1 GGAAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTTGAAAA--TTTAATTTCAA
* *
22821306 GGAAAATTGATACTTTCAACTTTTCCTCAAAACCT-TTTTTTTGAAAATTT-ATTCTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAA-ATATTTTTTTGAAAATTTAATT-TCAA
*
22821364 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATAATTTTATTTTAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTT-TTTGAAAA
22821413 AAATAAAATA
Statistics
Matches: 250, Mismatches: 21, Indels: 38
0.81 0.07 0.12
Matches are distributed among these distances:
57 10 0.04
58 72 0.29
59 90 0.36
60 21 0.08
61 6 0.02
64 6 0.02
65 2 0.01
66 42 0.17
67 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.07, T:0.43
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTAATTTCAA
Found at i:22821265 original size:125 final size:117
Alignment explanation
Indices: 22821064--22821403 Score: 452
Period size: 125 Copynumber: 2.8 Consensus size: 117
22821054 TTTGTACAAG
* ** * * *
22821064 GGAAAATTGATACTTTTAACTTTT-CTCCAAAATATTTTTTTTGAAATTTTAATTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCT-CAAAACCTTTTTTTTGAAAATTTATTTTTAAGGAAAA
*
22821128 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGGAAAC-TTTAATTTCGA
65 TTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAACTTTTAATTTCGA
* *
22821181 GGAAAATTGATACTTTCAACTTTTTCTCAAAAAAAAAAAACCTTTTTTCTGAAAATTTATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTC--------AAAACCTTTTTTTTGAAAATTTATTTTTA
*
22821246 AGAAAAATTGATACTTTCAACTTTT-CTCCAAAAATATTTTTTGAAAACTTTTAATTTCGA
58 AGGAAAATTGATACTTTCAACTTTTCCT-CAAAAATATTTTTTGAAAACTTTTAATTTCGA
*
22821306 GGAAAATTGATACTTTCAACTTTTCCTCAAAACCTTTTTTTTGAAAATTTATTCTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAACCTTTTTTTTGAAAATTTATTTTTAAGGAAAAT
*
22821371 TGATACTTTCAACTTTTCCTCAAAAATAATTTT
66 TGATACTTTCAACTTTTCCTCAAAAATATTTTT
22821404 ATTTTAAAAA
Statistics
Matches: 197, Mismatches: 14, Indels: 24
0.84 0.06 0.10
Matches are distributed among these distances:
117 87 0.44
118 4 0.02
124 13 0.07
125 93 0.47
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.43
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAACCTTTTTTTTGAAAATTTATTTTTAAGGAAAAT
TGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAACTTTTAATTTCGA
Found at i:22821420 original size:5 final size:5
Alignment explanation
Indices: 22821412--22821480 Score: 56
Period size: 5 Copynumber: 13.8 Consensus size: 5
22821402 TTATTTTAAA
*
22821412 AAAAT AAAAT --AAT AAAAT AAAAT -AAAT AAAAT AAAAAT GAAGAT -AAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT AAAAT
*
22821460 AAAAA ATAAAT ATAAAT AAAA
1 AAAAT A-AAAT A-AAAT AAAA
22821481 ATATTAAACA
Statistics
Matches: 53, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
3 3 0.06
4 7 0.13
5 24 0.45
6 19 0.36
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:22821430 original size:13 final size:14
Alignment explanation
Indices: 22821408--22821480 Score: 78
Period size: 15 Copynumber: 5.0 Consensus size: 14
22821398 AATTTTATTT
22821408 TAAA-AAAATAAAA
1 TAAATAAAATAAAA
22821421 T-AATAAAATAAAA
1 TAAATAAAATAAAA
22821434 TAAATAAAATAAAAA
1 TAAATAAAAT-AAAA
*
22821449 TGAAGATAAATAAAAAA
1 T-AA-ATAAA-ATAAAA
22821466 TAAATATAAATAAAA
1 TAAATA-AAATAAAA
22821481 ATATTAAACA
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
12 2 0.04
13 11 0.22
14 8 0.16
15 13 0.25
16 6 0.12
17 10 0.20
18 1 0.02
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (14 bp):
TAAATAAAATAAAA
Found at i:22821440 original size:4 final size:4
Alignment explanation
Indices: 22821408--22821526 Score: 54
Period size: 4 Copynumber: 29.0 Consensus size: 4
22821398 AATTTTATTT
*
22821408 TAAA AAAA TAAA -ATAA TAAAA TAAAA TAAA TAAA -ATAA -AAA TGAAGA
1 TAAA TAAA TAAA TA-AA T-AAA T-AAA TAAA TAAA TA-AA TAAA T-AA-A
* * **
22821455 TAAA TAAA -AAA TAAA T--A TAAA TAAA -AATA TTAAA CAATT TTGA TATAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA-A -TAAA TAA-A TAAA TA-AA
22821503 TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA
22821527 CAAAAAAAAA
Statistics
Matches: 90, Mismatches: 10, Indels: 30
0.69 0.08 0.23
Matches are distributed among these distances:
2 2 0.02
3 9 0.10
4 58 0.64
5 16 0.18
6 5 0.06
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:22821459 original size:21 final size:22
Alignment explanation
Indices: 22821408--22821479 Score: 82
Period size: 21 Copynumber: 3.4 Consensus size: 22
22821398 AATTTTATTT
22821408 TAAAA-AAATAAAATAATAAAA
1 TAAAATAAATAAAATAATAAAA
22821429 TAAAATAAATAAAAT-A-AAAA
1 TAAAATAAATAAAATAATAAAA
*
22821449 TGAAGATAAATAAAA-AAT-AAA
1 T-AAAATAAATAAAATAATAAAA
22821470 TATAAATAAA
1 TA-AAATAAA
22821480 AATATTAAAC
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
20 6 0.14
21 29 0.66
22 9 0.20
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (22 bp):
TAAAATAAATAAAATAATAAAA
Found at i:22821479 original size:17 final size:17
Alignment explanation
Indices: 22821410--22821481 Score: 78
Period size: 17 Copynumber: 4.3 Consensus size: 17
22821400 TTTTATTTTA
22821410 AAAAAATAAAATAATAAA-
1 AAAAAAT-AAAT-ATAAAT
*
22821428 ATAAAATAAATA-AAAT
1 AAAAAATAAATATAAAT
* *
22821444 -AAAAATGAAGATAAAT
1 AAAAAATAAATATAAAT
22821460 AAAAAATAAATATAAAT
1 AAAAAATAAATATAAAT
22821477 AAAAA
1 AAAAA
22821482 TATTAAACAA
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
15 11 0.24
16 5 0.11
17 23 0.51
18 6 0.13
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (17 bp):
AAAAAATAAATATAAAT
Found at i:22821522 original size:16 final size:16
Alignment explanation
Indices: 22821408--22821526 Score: 54
Period size: 17 Copynumber: 7.2 Consensus size: 16
22821398 AATTTTATTT
*
22821408 TAAAAAAATAAA-ATAA
1 TAAATAAATAAATA-AA
22821424 TAAAATAAAATAAATAAA
1 T-AAAT-AAATAAATAAA
22821442 -ATAA-AAATGAAGATAAA
1 TA-AATAAAT-AA-ATAAA
22821459 TAAA-AAATAAAT--A
1 TAAATAAATAAATAAA
22821472 TAAATAAA-AATATTAAA
1 TAAATAAATAA-A-TAAA
* * **
22821489 CAATTTTGATATAATAAA
1 TAA-ATAAATA-AATAAA
22821507 TAAATAAATAAATAAA
1 TAAATAAATAAATAAA
22821523 TAAA
1 TAAA
22821527 CAAAAAAAAA
Statistics
Matches: 79, Mismatches: 9, Indels: 30
0.67 0.08 0.25
Matches are distributed among these distances:
13 7 0.09
14 4 0.05
15 7 0.09
16 16 0.20
17 23 0.29
18 18 0.23
19 3 0.04
20 1 0.01
ACGTcount: A:0.71, C:0.01, G:0.03, T:0.25
Consensus pattern (16 bp):
TAAATAAATAAATAAA
Found at i:22822378 original size:9 final size:9
Alignment explanation
Indices: 22822364--22822397 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
22822354 TCTTCAGCCG
22822364 AAAAAATCA
1 AAAAAATCA
*
22822373 AAAAAATAA
1 AAAAAATCA
22822382 AAAAAATCA
1 AAAAAATCA
22822391 AATAAAA
1 AA-AAAA
22822398 ATATTAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATCA
Found at i:22822483 original size:22 final size:22
Alignment explanation
Indices: 22822410--22822499 Score: 80
Period size: 22 Copynumber: 4.1 Consensus size: 22
22822400 ATTAATGAAA
** *
22822410 ATAATCAGATAAACCAAAAAAT
1 ATAATCAGATAAATTATAAAAT
22822432 -TAA-CAGATAAATTA-AAAAT
1 ATAATCAGATAAATTATAAAAT
*
22822451 AAATAAT-AGATAAATTATAACAT
1 --ATAATCAGATAAATTATAAAAT
22822474 ATAATCAGATAAATATATATAAAT
1 ATAATCAGATAAAT-TATA-AAAT
22822498 AT
1 AT
22822500 CAACAGAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
19 5 0.09
20 9 0.16
21 8 0.14
22 21 0.38
23 8 0.14
24 5 0.09
ACGTcount: A:0.61, C:0.07, G:0.04, T:0.28
Consensus pattern (22 bp):
ATAATCAGATAAATTATAAAAT
Found at i:22822545 original size:24 final size:23
Alignment explanation
Indices: 22822518--22822626 Score: 82
Period size: 24 Copynumber: 4.7 Consensus size: 23
22822508 AAAAAATAGT
*
22822518 AATAATAATAAAGATATATATACA
1 AATAATAATAAA-ATATATATAAA
*
22822542 AATAATAGTAATAATA-A-ATAAA
1 AATAATAATAA-AATATATATAAA
* *
22822564 TA-AATAATAAATACATAATATAAA
1 AATAATAATAAA-ATAT-ATATAAA
*
22822588 AATAA-AAGAAATATATATATAAA
1 AATAATAATAAA-ATATATATAAA
*
22822611 TAATAAAAATAAAATA
1 -AATAATAATAAAATA
22822627 CAAATATAAA
Statistics
Matches: 68, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
20 1 0.01
21 9 0.13
22 5 0.07
23 9 0.13
24 36 0.53
25 8 0.12
ACGTcount: A:0.68, C:0.02, G:0.03, T:0.28
Consensus pattern (23 bp):
AATAATAATAAAATATATATAAA
Found at i:22822571 original size:15 final size:15
Alignment explanation
Indices: 22822551--22822623 Score: 71
Period size: 15 Copynumber: 4.9 Consensus size: 15
22822541 AAATAATAGT
22822551 AATAATAAATAAATA
1 AATAATAAATAAATA
*
22822566 AATAATAAATACATA
1 AATAATAAATAAATA
*
22822581 ATATAA-AAATAAAAGA
1 A-ATAATAAAT-AAATA
*
22822597 AATATATATATAAAT-
1 AATA-ATAAATAAATA
22822612 AATAA-AAATAAA
1 AATAATAAATAAA
22822624 ATACAAATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
13 6 0.12
14 1 0.02
15 26 0.54
16 12 0.25
17 3 0.06
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.26
Consensus pattern (15 bp):
AATAATAAATAAATA
Found at i:22822572 original size:11 final size:11
Alignment explanation
Indices: 22822551--22822617 Score: 57
Period size: 11 Copynumber: 5.8 Consensus size: 11
22822541 AAATAATAGT
22822551 AATAATAAATA
1 AATAATAAATA
22822562 AATAA-ATAATA
1 AATAATA-AATA
22822573 AATACATAATATA
1 AATA-ATAA-ATA
*
22822586 AA-AATAAAAGA
1 AATAAT-AAATA
*
22822597 AATATATATATA
1 AATA-ATAAATA
22822609 AATAATAAA
1 AATAATAAA
22822618 AATAAAATAC
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
10 1 0.02
11 23 0.51
12 13 0.29
13 8 0.18
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.27
Consensus pattern (11 bp):
AATAATAAATA
Found at i:22822590 original size:26 final size:25
Alignment explanation
Indices: 22822552--22822637 Score: 90
Period size: 26 Copynumber: 3.4 Consensus size: 25
22822542 AATAATAGTA
22822552 ATAATA-AATAAATAAATAATAAATAC
1 ATAATATAA-AAATAAA-AATAAATAC
* *
22822578 ATAATATAAAAAT-AAAAGAAATAT
1 ATAATATAAAAATAAAAATAAATAC
22822602 AT-ATATAAATAATAAAAATAAAATAC
1 ATAATATAAA-AATAAAAAT-AAATAC
22822628 A-AATATAAAA
1 ATAATATAAAA
22822638 TACAAAAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
23 7 0.14
24 12 0.24
25 7 0.14
26 23 0.45
27 2 0.04
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.26
Consensus pattern (25 bp):
ATAATATAAAAATAAAAATAAATAC
Found at i:22822593 original size:30 final size:30
Alignment explanation
Indices: 22822550--22822624 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
22822540 CAAATAATAG
22822550 TAATAATAAATAAATAAATAATAAATACAT-AA
1 TAATAA-AAATAAA-AAA-AATAAATACATAAA
* * *
22822582 T-ATAAAAATAAAAGAAATATATATATAAA
1 TAATAAAAATAAAAAAAATAAATACATAAA
22822611 TAATAAAAATAAAA
1 TAATAAAAATAAAA
22822625 TACAAATATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
28 9 0.24
29 5 0.13
30 19 0.50
31 4 0.11
32 1 0.03
ACGTcount: A:0.71, C:0.01, G:0.01, T:0.27
Consensus pattern (30 bp):
TAATAAAAATAAAAAAAATAAATACATAAA
Found at i:22822635 original size:13 final size:13
Alignment explanation
Indices: 22822619--22822643 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22822609 AATAATAAAA
22822619 ATAAAATACAAAT
1 ATAAAATACAAAT
22822632 ATAAAATACAAA
1 ATAAAATACAAA
22822644 AAAAATGGGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAATACAAAT
Found at i:22822636 original size:43 final size:43
Alignment explanation
Indices: 22822554--22822637 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 43
22822544 TAATAGTAAT
*
22822554 AATAAATAAATAAATAATAAATACATAATATAAAAATAAAAGA
1 AATAAATAAATAAATAATAAATACATAAAATAAAAATAAAAGA
* *
22822597 AATATATATATAAATAATAAA-A-ATAAAATACAAATATAAAA
1 AATAAATAAATAAATAATAAATACATAAAATA-AAA-ATAAAA
22822638 TACAAAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
41 7 0.19
42 4 0.11
43 25 0.69
ACGTcount: A:0.71, C:0.02, G:0.01, T:0.25
Consensus pattern (43 bp):
AATAAATAAATAAATAATAAATACATAAAATAAAAATAAAAGA
Found at i:22822639 original size:24 final size:24
Alignment explanation
Indices: 22822572--22822649 Score: 70
Period size: 24 Copynumber: 3.2 Consensus size: 24
22822562 AATAAATAAT
* *
22822572 AAATACATAATATAAAA-ATAAAAG
1 AAATACA-AATATAAAATACAAAAA
* *
22822596 AAATATATATATAAATAATA-AAAATA
1 AAATACAAATAT-AA-AATACAAAA-A
22822622 AAATACAAATATAAAATACAAAAA
1 AAATACAAATATAAAATACAAAAA
22822646 AAAT
1 AAAT
22822650 GGGCTTACCC
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
23 4 0.09
24 17 0.39
25 12 0.27
26 11 0.25
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (24 bp):
AAATACAAATATAAAATACAAAAA
Found at i:22822905 original size:13 final size:13
Alignment explanation
Indices: 22822884--22822917 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
22822874 AAATTAACTC
* *
22822884 AAATAAAACATGT
1 AAATTAAACATAT
22822897 AAATTAAACATAT
1 AAATTAAACATAT
22822910 AAATTAAA
1 AAATTAAA
22822918 TAATTAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (13 bp):
AAATTAAACATAT
Found at i:22827020 original size:24 final size:24
Alignment explanation
Indices: 22826992--22827040 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
22826982 ATGACATAAT
* *
22826992 TTTATTTATTGACAGTGTATAAAA
1 TTTATATATTGACAGTATATAAAA
* *
22827016 TTTATATATTTACAGTATATCAAA
1 TTTATATATTGACAGTATATAAAA
22827040 T
1 T
22827041 ACAAACTCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (24 bp):
TTTATATATTGACAGTATATAAAA
Found at i:22827500 original size:62 final size:62
Alignment explanation
Indices: 22827424--22827545 Score: 181
Period size: 62 Copynumber: 2.0 Consensus size: 62
22827414 TTACACTTAG
*
22827424 ATTCAATGTATACTAACAAGAGAGGACCAAGGAATTATCAATTCAAGACAGCTGAGATAGGA
1 ATTCAATGTATACTAACAAGAGAGGACCAAGGAATTATCAATACAAGACAGCTGAGATAGGA
* * ** * *
22827486 ATTCAATTTATACTAACATGAGAGGACGGAGGAATTGTCAATACAAGACAGCTGGGATAG
1 ATTCAATGTATACTAACAAGAGAGGACCAAGGAATTATCAATACAAGACAGCTGAGATAG
22827546 TTGCAACAGA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 53 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (62 bp):
ATTCAATGTATACTAACAAGAGAGGACCAAGGAATTATCAATACAAGACAGCTGAGATAGGA
Found at i:22827682 original size:28 final size:28
Alignment explanation
Indices: 22827647--22827716 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
22827637 GGTCATTTAA
22827647 AATATTGATTTTGATT-CCTCAAGAAAAC
1 AATATTGATTTTGATTCCCT-AAGAAAAC
*
22827675 AATATTGATTTTGATTCCCTAAGAAAGC
1 AATATTGATTTTGATTCCCTAAGAAAAC
* *
22827703 AATGTTAATTTTGA
1 AATATTGATTTTGA
22827717 CTTGGTTCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 35 0.92
29 3 0.08
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (28 bp):
AATATTGATTTTGATTCCCTAAGAAAAC
Found at i:22829060 original size:18 final size:19
Alignment explanation
Indices: 22829039--22829076 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
22829029 AATCAAGTTG
22829039 AAAGTTCAT-TAT-CAGCAC
1 AAAGTT-ATCTATACAGCAC
22829057 AAAGTTATCTATACAGCAC
1 AAAGTTATCTATACAGCAC
22829076 A
1 A
22829077 TGGACTGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 9 0.50
19 7 0.39
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (19 bp):
AAAGTTATCTATACAGCAC
Found at i:22829794 original size:14 final size:13
Alignment explanation
Indices: 22829769--22829803 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
22829759 AAATTAAATC
22829769 TAAAATTTTTTTA
1 TAAAATTTTTTTA
*
22829782 TAAAATATTTTTTT
1 TAAAAT-TTTTTTA
22829796 TAAAATTT
1 TAAAATTT
22829804 AAATTCAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TAAAATTTTTTTA
Done.