Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 120 of 133
Found at i:23044637 original size:17 final size:17
Alignment explanation
Indices: 23044617--23044653 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
23044607 TTAAAAATTA
23044617 AAAATCCCCTAAAATCC
1 AAAATCCCCTAAAATCC
* *
23044634 AAAATCTCTTAAAATCC
1 AAAATCCCCTAAAATCC
23044651 AAA
1 AAA
23044654 GTCCTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (17 bp):
AAAATCCCCTAAAATCC
Found at i:23044665 original size:16 final size:17
Alignment explanation
Indices: 23044627--23044666 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
23044617 AAAATCCCCT
*
23044627 AAAATCCAAAATCTCTT
1 AAAATCCAAAATCTCTA
*
23044644 AAAATCCAAAGTC-CTA
1 AAAATCCAAAATCTCTA
23044660 AAAATCC
1 AAAATCC
23044667 TAAGGACTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.50, C:0.25, G:0.03, T:0.23
Consensus pattern (17 bp):
AAAATCCAAAATCTCTA
Found at i:23046144 original size:12 final size:14
Alignment explanation
Indices: 23046127--23046158 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
23046117 ATCATAAAAG
23046127 ATAAAAGAT-GC-A
1 ATAAAAGATGGCAA
23046139 ATAAAAGATGGCAA
1 ATAAAAGATGGCAA
23046153 ATAAAA
1 ATAAAA
23046159 ATCAACTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.50
13 2 0.11
14 7 0.39
ACGTcount: A:0.62, C:0.06, G:0.16, T:0.16
Consensus pattern (14 bp):
ATAAAAGATGGCAA
Found at i:23046444 original size:26 final size:27
Alignment explanation
Indices: 23046392--23046457 Score: 95
Period size: 26 Copynumber: 2.6 Consensus size: 27
23046382 TTAATATAAC
23046392 TATTAAAATA-A-TAAAATTTATTTAT
1 TATTAAAATATATTAAAATTTATTTAT
*
23046417 TATTAAAATATATTGAAA-TTATTTAT
1 TATTAAAATATATTAAAATTTATTTAT
23046443 TATTAAAAT-TATTAA
1 TATTAAAATATATTAA
23046458 TATTAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 15 0.41
26 18 0.49
27 4 0.11
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (27 bp):
TATTAAAATATATTAAAATTTATTTAT
Found at i:23046466 original size:16 final size:16
Alignment explanation
Indices: 23046426--23046465 Score: 55
Period size: 15 Copynumber: 2.6 Consensus size: 16
23046416 TTATTAAAAT
*
23046426 ATATTGAAATTATTTA
1 ATATTAAAATTATTTA
*
23046442 TTATTAAAATTA-TTA
1 ATATTAAAATTATTTA
23046457 ATATTAAAA
1 ATATTAAAA
23046466 AAGAATTACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 11 0.52
16 10 0.48
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATATTAAAATTATTTA
Found at i:23046591 original size:33 final size:34
Alignment explanation
Indices: 23046554--23046684 Score: 119
Period size: 33 Copynumber: 3.9 Consensus size: 34
23046544 ATACTTTATA
*
23046554 TTATTTATTAATA-TATTAATATTAATATAATAT
1 TTATTAATTAATATTATTAATATTAATATAATAT
* * *
23046587 TTATTAATTAA-ATTAATAATATTATTATATTAT
1 TTATTAATTAATATTATTAATATTAATATAATAT
* *
23046620 TTATTAATATAATATTATTTAGTAATTTATTATAATA-
1 TTATTAAT-TAATATTA-TTAAT-A-TTAATATAATAT
**
23046657 TTATTTCTTAATATTATT--TATTAATATA
1 TTATTAATTAATATTATTAATATTAATATA
23046685 TTATATTAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
31 7 0.09
32 2 0.02
33 36 0.44
34 3 0.04
35 6 0.07
36 11 0.13
37 7 0.09
38 10 0.12
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.56
Consensus pattern (34 bp):
TTATTAATTAATATTATTAATATTAATATAATAT
Found at i:23046618 original size:41 final size:42
Alignment explanation
Indices: 23046562--23046758 Score: 115
Period size: 44 Copynumber: 4.5 Consensus size: 42
23046552 TATTATTTAT
23046562 TAATA-TATTAATATTAATATAATATTTATTAATTA-AATTAA
1 TAATATTATT-ATATTAATATAATATTTATTAATTATAATTAA
* * *
23046603 TAATATTATTATATTATTTATTAATATAATATTATTTAGTAATTTATTA
1 TAATATTATTATATTA-ATA-TAATAT-TTATTAATTA-TAA-TTA--A
*
23046652 TAATATTATT-TCTTAATAT--TATTTATTAATATATTATATTAA
1 TAATATTATTATATTAATATAATATTTATTAAT-TA-TA-ATTAA
* * * *
23046694 TAGTATATTATTTATGAATAATATATTTTTTGTTAA-TAT-ATT-A
1 TA--ATATTA-TTAT-ATTAATATAATATTTATTAATTATAATTAA
*
23046737 TAATTTTATT-TATTAATATAAT
1 TAATATTATTATATTAATATAAT
23046759 CTTATTTATA
Statistics
Matches: 123, Mismatches: 15, Indels: 39
0.69 0.08 0.22
Matches are distributed among these distances:
38 9 0.07
39 1 0.01
40 2 0.02
41 16 0.13
42 9 0.07
43 15 0.12
44 27 0.22
45 3 0.02
46 5 0.04
47 13 0.11
48 4 0.03
49 19 0.15
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.55
Consensus pattern (42 bp):
TAATATTATTATATTAATATAATATTTATTAATTATAATTAA
Found at i:23046636 original size:18 final size:18
Alignment explanation
Indices: 23046551--23046767 Score: 101
Period size: 18 Copynumber: 12.6 Consensus size: 18
23046541 ATTATACTTT
23046551 ATATTATTTATT-A-AT-
1 ATATTATTTATTAATATA
*
23046566 ATATTA-ATATTAATAT-
1 ATATTATTTATTAATATA
23046582 A-A-TATTTATTAAT-TA
1 ATATTATTTATTAATATA
* * * *
23046597 A-ATTA-ATAATATTATT
1 ATATTATTTATTAATATA
23046613 ATATTATTTATTAATATA
1 ATATTATTTATTAATATA
* *
23046631 ATATTATTTAGTAATTTA
1 ATATTATTTATTAATATA
* * **
23046649 TTATAATATTATTTCT-TA
1 ATATTAT-TTATTAATATA
23046667 ATATTATTTATT-A-AT-
1 ATATTATTTATTAATATA
23046682 ATATTA--TATTAATAGT-
1 ATATTATTTATTAATA-TA
*
23046698 ATATTATTTATGAATA-A
1 ATATTATTTATTAATATA
* *
23046715 TATATTTTTTGTTAATATA
1 -ATATTATTTATTAATATA
23046734 TTATAATTTTATTTATTAATATA
1 --AT-A--TTATTTATTAATATA
*
23046757 ATCTTATTTAT
1 ATATTATTTAT
23046768 AAGTAAAATT
Statistics
Matches: 153, Mismatches: 27, Indels: 41
0.69 0.12 0.19
Matches are distributed among these distances:
13 4 0.03
14 8 0.05
15 29 0.19
16 15 0.10
17 9 0.06
18 63 0.41
19 6 0.04
20 3 0.02
21 3 0.02
23 13 0.08
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (18 bp):
ATATTATTTATTAATATA
Found at i:23046645 original size:13 final size:13
Alignment explanation
Indices: 23046551--23046705 Score: 119
Period size: 13 Copynumber: 11.9 Consensus size: 13
23046541 ATTATACTTT
23046551 ATATTATTTATTA
1 ATATTATTTATTA
23046564 ATA-TATTAATATTA
1 ATATTATT--TATTA
23046578 ATATAATATTTATTA
1 ATAT--TATTTATTA
* * *
23046593 AT-TAAATTAATA
1 ATATTATTTATTA
23046605 ATATTATTATATT-
1 ATATTATT-TATTA
*
23046618 AT-TTATTAATATA
1 ATATTATTTAT-TA
*
23046631 ATATTATTTAGTA
1 ATATTATTTATTA
23046644 AT-TTA-TTA-TA
1 ATATTATTTATTA
*
23046654 ATATTATTTCTTA
1 ATATTATTTATTA
23046667 ATATTATTTATTA
1 ATATTATTTATTA
23046680 ATA-TATTATATTA
1 ATATTATT-TATTA
*
23046693 ATAGTATATTATT
1 ATATTAT-TTATT
23046706 TATGAATAAT
Statistics
Matches: 115, Mismatches: 11, Indels: 31
0.73 0.07 0.20
Matches are distributed among these distances:
10 4 0.03
11 8 0.07
12 27 0.23
13 39 0.34
14 25 0.22
15 8 0.07
17 4 0.03
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (13 bp):
ATATTATTTATTA
Found at i:23046668 original size:23 final size:25
Alignment explanation
Indices: 23046627--23046683 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 25
23046617 TATTTATTAA
23046627 TATAATATTATTTAGTAAT-TTA-T
1 TATAATATTATTTAGTAATATTATT
**
23046650 TATAATATTATTTCTTAATATTATT
1 TATAATATTATTTAGTAATATTATT
23046675 TATTAATAT
1 TA-TAATAT
23046684 ATTATATTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 17 0.59
24 3 0.10
25 3 0.10
26 6 0.21
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
TATAATATTATTTAGTAATATTATT
Found at i:23046739 original size:85 final size:87
Alignment explanation
Indices: 23046573--23046764 Score: 221
Period size: 85 Copynumber: 2.2 Consensus size: 87
23046563 AATATATTAA
* * *
23046573 TATTAATATAATATTTATTAATTAAATTAATAATATTATTATATTATTTATTAATATAATATTAT
1 TATTAATAT--TATTTATTAATTAAATTAATAATAATAGTATATTATTTATGAATATAATATTAT
*
23046638 TTAGTAATTTATTATAATATTATT
64 TTAGTAATATATTATAATATTATT
* * *
23046662 TCTTAATATTATTTATTAA-TATATT-ATATTAATAGTATATTATTTATGAATA-ATATATT-TT
1 TATTAATATTATTTATTAATTAAATTAATAATAATAGTATATTATTTATGAATATA-ATATTATT
* *
23046723 TTGTTAATATATTATAATTTTATT
65 TAG-TAATATATTATAATATTATT
*
23046747 TATTAATATAATCTTATT
1 TATTAATATTAT-TTATT
23046765 TATAAGTAAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
84 5 0.06
85 56 0.63
86 10 0.11
87 10 0.11
89 8 0.09
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (87 bp):
TATTAATATTATTTATTAATTAAATTAATAATAATAGTATATTATTTATGAATATAATATTATTT
AGTAATATATTATAATATTATT
Found at i:23047097 original size:14 final size:14
Alignment explanation
Indices: 23047078--23047111 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
23047068 ATAATATTAA
* *
23047078 AATATTATTTTTTT
1 AATATTAATGTTTT
23047092 AATATTAATGTTTT
1 AATATTAATGTTTT
23047106 AATATT
1 AATATT
23047112 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (14 bp):
AATATTAATGTTTT
Found at i:23047142 original size:18 final size:18
Alignment explanation
Indices: 23047108--23047160 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
23047098 AATGTTTTAA
23047108 TATTTTT-AAAT-AAATT
1 TATTTTTAAAATAAAATT
23047124 TATTTTTAAAATAAAATT
1 TATTTTTAAAATAAAATT
** *
23047142 TATTAATAAAATAATATT
1 TATTTTTAAAATAAAATT
23047160 T
1 T
23047161 TGTACTAGTC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
16 7 0.22
17 4 0.12
18 21 0.66
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATTTTTAAAATAAAATT
Found at i:23058143 original size:236 final size:236
Alignment explanation
Indices: 23057730--23058593 Score: 1278
Period size: 236 Copynumber: 3.7 Consensus size: 236
23057720 ATATCCCCTA
* * * * * * *
23057730 ATTATTGAAGGTGACTTTGATTATAAAATGCCTTTAATATACCACAATGGTAATGGAAGGCATTT
1 ATTATTGAAGGCGGCTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCGTTT
* * **
23057795 AATAGAAAAGGCACCTTTAGTATACCTTTAAATTTAATAATCCATTACTGAAGGTGTTTGTTATA
66 AATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATA
* * * *
23057860 ATTGAAAATGCCTTCAAAATTTTCCTACAAAAATCTTTTGGGAATTAATAAAGATGACTTGTACT
131 ACTGAAAACGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTACT
23057925 GAAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACT
196 GAAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACT
* * * * *
23057966 ATTATTGAAGGCGGCTTTAATTATAAAATACATTTAATATACCACGATGGAAATGAAAAGCGTTT
1 ATTATTGAAGGCGGCTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCGTTT
* * * * * * *
23058031 AATACAAAAGACGCCTTCAGTATACCTTTAAATTTAATAATCTATTACCGAAGACGTTTGCTATA
66 AATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATA
* *
23058096 ACTGAAAACACCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTATT
131 ACTGAAAACGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTACT
*
23058161 GAAACATGCCTTCTATACAGAGGCAGACAAATTGCATCACT
196 GAAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACT
* * * * * *
23058202 GTTATTGAAGGTGGCTTTAATTATAAAACACCTTCAATATACCATGACGGTAATGGAATGCGTTT
1 ATTATTGAAGGCGGCTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCGTTT
*
23058267 AATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCTATTACCGAAGGCATTTGTTATA
66 AATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATA
* * *
23058332 ACTGAAAACGCCTTCAAAATTTTCCCACAAAAATCTTTTAGGAATTAATATAGGCGACTTGTACT
131 ACTGAAAACGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTACT
* * *
23058397 GAAACATGCCTTCTATATAGAGGTAGACATATAGCATCACT
196 GAAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACT
* * *
23058438 GTTATTGAAGGCGGCTTTGATTATAAAATGCCTTCAATATACCACGATGGTAATGGAAGGCGTTT
1 ATTATTGAAGGCGGCTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCGTTT
* *
23058503 AATAGAAAAGGCGCCTTTAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATA
66 AATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATA
* *
23058568 ACTGAAAACGCTTTTAAAATTTTCCC
131 ACTGAAAACGCCTTCAAAATTTTCCC
23058594 TCCATATATT
Statistics
Matches: 565, Mismatches: 63, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
236 565 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.32
Consensus pattern (236 bp):
ATTATTGAAGGCGGCTTTAATTATAAAATACCTTCAATATACCACGATGGTAATGGAAGGCGTTT
AATAGAAAAGGCACCTTCAGTATACCTTTAAATTTAATAATCCATTACCGAAGGCATTTGTTATA
ACTGAAAACGCCTTCAAAATTTTCCCACAAAAATCTTTTGGGAATTAATAAAGGTGACTTGTACT
GAAACATGCCTTCTATATAGAGGCAGACAAATTGCATCACT
Found at i:23062003 original size:36 final size:35
Alignment explanation
Indices: 23061935--23062005 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 35
23061925 CAATATATAA
* * * *
23061935 ACCAAATGTTTTCTGGGCATAAATATATAACTGAC
1 ACCAAACGTTTTCTGAGCATAAACATACAACTGAC
*
23061970 ACCAAACGTTTTTCTGAGCATAAACCTACAACTGAC
1 ACCAAACG-TTTTCTGAGCATAAACATACAACTGAC
23062006 TTCACATATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
35 7 0.23
36 23 0.77
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.28
Consensus pattern (35 bp):
ACCAAACGTTTTCTGAGCATAAACATACAACTGAC
Found at i:23064640 original size:7 final size:6
Alignment explanation
Indices: 23064627--23064701 Score: 61
Period size: 6 Copynumber: 12.7 Consensus size: 6
23064617 CTTGTTTTTA
* *
23064627 TTATTT TGTA-TT TTATATT TTATTA TT-TTA TTATTT TTATTT TTA---
1 TTATTT T-TATTT TTAT-TT TTATTT TTATTT TTATTT TTATTT TTATTT
23064672 TTATTT TTATTTT ATTATTT TTATTT TTAT
1 TTATTT TTA-TTT -TTATTT TTATTT TTAT
23064702 ATATTTTTTC
Statistics
Matches: 58, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
3 3 0.05
5 7 0.12
6 31 0.53
7 14 0.24
8 3 0.05
ACGTcount: A:0.21, C:0.00, G:0.01, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:23064645 original size:14 final size:14
Alignment explanation
Indices: 23064622--23064709 Score: 115
Period size: 15 Copynumber: 5.9 Consensus size: 14
23064612 TCCACCTTGT
23064622 TTTTATTATTTTGTA
1 TTTTATTATTTT-TA
23064637 TTTTA-TATTTTATTA
1 TTTTATTA-TTT-TTA
23064652 TTTTATTATTTTTA
1 TTTTATTATTTTTA
23064666 TTTTTATTATTTTTA
1 -TTTTATTATTTTTA
23064681 TTTTATTATTTTTA
1 TTTTATTATTTTTA
23064695 TTTTTATATATTTTT
1 -TTTTAT-TATTTTT
23064710 TCTTTATATC
Statistics
Matches: 67, Mismatches: 0, Indels: 11
0.86 0.00 0.14
Matches are distributed among these distances:
14 19 0.28
15 38 0.57
16 10 0.15
ACGTcount: A:0.22, C:0.00, G:0.01, T:0.77
Consensus pattern (14 bp):
TTTTATTATTTTTA
Found at i:23064692 original size:37 final size:36
Alignment explanation
Indices: 23064621--23064758 Score: 133
Period size: 37 Copynumber: 3.8 Consensus size: 36
23064611 GTCCACCTTG
23064621 TTTTTATTATTT-TGTATTTTATATTTTATTATTTTATTA
1 TTTTTATTATTTAT-TATTTT-TATTTTATTA-TTT-TTA
23064660 TTTTTATT-TTTATTATTTTTATTTTATTATTTTTA
1 TTTTTATTATTTATTATTTTTATTTTATTATTTTTA
* * * *
23064695 TTTTTATATATTTTTTCTTTATATCTTATGTATTTGTTA
1 TTTTTAT-TATTTATTATTTTTATTTTAT-TATTT-TTA
*
23064734 TTTAT-TTA-TTATTA-TTTTATTTTAT
1 TTTTTATTATTTATTATTTTTATTTTAT
23064759 GTTAATATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
35 19 0.22
36 8 0.09
37 27 0.32
38 15 0.18
39 16 0.19
ACGTcount: A:0.22, C:0.01, G:0.02, T:0.75
Consensus pattern (36 bp):
TTTTTATTATTTATTATTTTTATTTTATTATTTTTA
Found at i:23064716 original size:59 final size:58
Alignment explanation
Indices: 23064622--23064807 Score: 148
Period size: 59 Copynumber: 3.0 Consensus size: 58
23064612 TCCACCTTGT
23064622 TTTTATTATTTTGTA-TTTTATAT-TTTATTATTTTATTATTTTTATTTTTATTATTTTTA
1 TTTTATTATTTT-TATTTTTATATATTT-TT-TTTTATTATTTTTATTTTTATTATTTTTA
23064681 TTTTATTATTTTTATTTTTATATATTTTTTCTTTA-TATCTTATGTATTTGTTATTTATTTATTA
1 TTTTATTATTTTTATTTTTATATATTTTTT-TTTATTAT-TT-T-TATTT-TTA-TTATTT-TTA
* * * * *
23064745 TTATT-TTA-TTTTATGTTAATATATATATTTTATTTATCTAGTTATATATTTATTATTATTTA
1 TT-TTATTATTTTTAT-TT-TTATATAT-TTTTTTTTAT-TATTTTTATTTTTATTATT-TTTA
23064807 T
1 T
23064808 CTATTGTAAT
Statistics
Matches: 106, Mismatches: 5, Indels: 29
0.76 0.04 0.21
Matches are distributed among these distances:
58 6 0.06
59 28 0.26
60 4 0.04
61 5 0.05
62 12 0.11
63 16 0.15
64 14 0.13
65 13 0.12
66 6 0.06
67 2 0.02
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.71
Consensus pattern (58 bp):
TTTTATTATTTTTATTTTTATATATTTTTTTTTATTATTTTTATTTTTATTATTTTTA
Found at i:23064728 original size:22 final size:21
Alignment explanation
Indices: 23064640--23064801 Score: 53
Period size: 20 Copynumber: 7.9 Consensus size: 21
23064630 TTTTGTATTT
23064640 TATATT-TTATTATTTTA-TTA
1 TATATTATTATT-TTTTATTTA
* * *
23064660 T-TTTTATT-TTTATTATTTT
1 TATATTATTATTTTTTATTTA
* *
23064679 TATTTTATTATTTTTATTTTTA
1 TATATTATTATTTTT-TATTTA
23064701 TATATT-TT-TTCTTTATATCTTA
1 TATATTATTATT-TTT-TAT-TTA
* * *
23064723 TGTA-T-TTGTTATTTATTTA
1 TATATTATTATTTTTTATTTA
23064742 T-TATTATT-TTATTTTATGTTA
1 TATATTATTATT-TTTTAT-TTA
*
23064763 -ATA-TA-TATATTTTATTTA
1 TATATTATTATTTTTTATTTA
* *
23064781 TCTAGTTATATATTTATTATT
1 TATA-TTAT-TATTTTTTATT
23064802 ATTTATCTAT
Statistics
Matches: 108, Mismatches: 15, Indels: 35
0.68 0.09 0.22
Matches are distributed among these distances:
18 9 0.08
19 24 0.22
20 25 0.23
21 24 0.22
22 17 0.16
23 9 0.08
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TATATTATTATTTTTTATTTA
Found at i:23064750 original size:14 final size:14
Alignment explanation
Indices: 23064623--23064833 Score: 81
Period size: 14 Copynumber: 14.9 Consensus size: 14
23064613 CCACCTTGTT
23064623 TTTATTATT-TTGTA
1 TTTATTATTATT-TA
*
23064637 TTT-TATATTTTATTA
1 TTTAT-TATTAT-TTA
23064652 TTTTATTATT-TTTA
1 -TTTATTATTATTTA
23064666 TTT-TTATTATTTTTA
1 TTTATTATTA--TTTA
23064681 TTTTATTATT-TTTA
1 -TTTATTATTATTTA
23064695 TTT-TTATATATTT-
1 TTTATTAT-TATTTA
*
23064708 TTTCTT-TATATCTTA
1 TTTATTAT-TAT-TTA
* *
23064723 TGTATTTGTTATTTA
1 TTTA-TTATTATTTA
23064738 TTTATTATTA--T-
1 TTTATTATTATTTA
23064749 TTTATT-TTATGTTA
1 TTTATTATTAT-TTA
*
23064763 -ATA-TATATATTTTA
1 TTTATTAT-TA-TTTA
*
23064777 TTTATCTAGTTATATA
1 TTTAT-TA-TTATTTA
23064793 TTTATTATTATTTA
1 TTTATTATTATTTA
* * *
23064807 TCTATTGTAATTTA
1 TTTATTATTATTTA
* *
23064821 TCTAGTATTATTT
1 TTTATTATTATTT
23064834 TTATCTGTTA
Statistics
Matches: 155, Mismatches: 14, Indels: 56
0.69 0.06 0.25
Matches are distributed among these distances:
10 3 0.02
11 6 0.04
12 11 0.07
13 20 0.13
14 58 0.37
15 21 0.14
16 24 0.15
17 11 0.07
18 1 0.01
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.69
Consensus pattern (14 bp):
TTTATTATTATTTA
Found at i:23064752 original size:15 final size:14
Alignment explanation
Indices: 23064621--23064756 Score: 111
Period size: 15 Copynumber: 9.3 Consensus size: 14
23064611 GTCCACCTTG
*
23064621 TTTTTATTATTTTG
1 TTTTTATTATTTTA
23064635 TATTTTA-TATTTTA
1 T-TTTTATTATTTTA
23064649 TTATTTTATTATTTTTA
1 -T-TTTTATTA-TTTTA
23064666 TTTTTATTATTTT-
1 TTTTTATTATTTTA
23064679 TATTTTATTATTTTTA
1 T-TTTTATTA-TTTTA
23064695 TTTTTATATATTTT-
1 TTTTTAT-TATTTTA
*
23064709 TTCTTTA-TATCTTA
1 TT-TTTATTATTTTA
*
23064723 TGTATTTGTTA-TTTA
1 T-T-TTTATTATTTTA
23064738 TTTATTATTATTTTA
1 TTT-TTATTATTTTA
23064753 TTTT
1 TTTT
23064757 ATGTTAATAT
Statistics
Matches: 102, Mismatches: 6, Indels: 28
0.75 0.04 0.21
Matches are distributed among these distances:
13 7 0.07
14 29 0.28
15 53 0.52
16 8 0.08
17 5 0.05
ACGTcount: A:0.21, C:0.01, G:0.02, T:0.75
Consensus pattern (14 bp):
TTTTTATTATTTTA
Found at i:23064761 original size:29 final size:29
Alignment explanation
Indices: 23064623--23064805 Score: 86
Period size: 29 Copynumber: 6.4 Consensus size: 29
23064613 CCACCTTGTT
* *
23064623 TTTATTATT-TTGTATTTTAT-AT-TTTA
1 TTTATTATTATTTTATTTTATGTTATTTA
* *
23064649 TTATTTTATTATTTTTATTTT-TATTATTT-
1 TT-TATTATTA-TTTTATTTTATGTTATTTA
* *
23064678 TTATTTTATTATTTTTATTTTTAT-ATATTT-
1 TT-TATTATTA-TTTTA-TTTTATGTTATTTA
* *
23064708 TTTCTT-TATATCTTATGTATT-TGTTATTTA
1 TTTATTAT-TATTTTAT-T-TTATGTTATTTA
*
23064738 TTTATTATTATTTTATTTTATGTTAATATA
1 TTTATTATTATTTTATTTTATGTT-ATTTA
* * *
23064768 TATATT-TTA-TTTA-TCTA-GTTATATA
1 TTTATTATTATTTTATTTTATGTTATTTA
23064793 TTTATTATTATTT
1 TTTATTATTATTT
23064806 ATCTATTGTA
Statistics
Matches: 127, Mismatches: 13, Indels: 33
0.73 0.08 0.19
Matches are distributed among these distances:
25 10 0.08
26 8 0.06
27 12 0.09
28 14 0.11
29 46 0.36
30 35 0.28
31 2 0.02
ACGTcount: A:0.25, C:0.02, G:0.03, T:0.71
Consensus pattern (29 bp):
TTTATTATTATTTTATTTTATGTTATTTA
Found at i:23064790 original size:23 final size:25
Alignment explanation
Indices: 23064730--23064810 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 25
23064720 TTATGTATTT
* *
23064730 GTTATTTATTTATTATTATTTTATTTTA
1 GTTATATA-TTATTATTA-TTTA-TCTA
23064758 TGTTAATATATATATT-TTATTTATCTA
1 -GTT-ATATAT-TATTATTATTTATCTA
23064785 GTTATATATTTATTATTATTTATCTA
1 GTTATATA-TTATTATTATTTATCTA
23064811 TTGTAATTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
25 9 0.20
26 15 0.33
27 3 0.07
28 4 0.09
29 7 0.15
30 8 0.17
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (25 bp):
GTTATATATTATTATTATTTATCTA
Found at i:23064900 original size:22 final size:22
Alignment explanation
Indices: 23064833--23064900 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 22
23064823 TAGTATTATT
* *
23064833 TTTATCTGTTAATA--TTTTGA
1 TTTATCTATTAATATTTTTTTA
* *
23064853 TTTATCTGATT--TCTTTCTTTA
1 TTTATCT-ATTAATATTTTTTTA
*
23064874 ATTATCTATTAATATTTTTTTA
1 TTTATCTATTAATATTTTTTTA
23064896 TTTAT
1 TTTAT
23064901 TTGATTTTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
19 1 0.03
20 10 0.29
21 12 0.34
22 12 0.34
ACGTcount: A:0.24, C:0.07, G:0.04, T:0.65
Consensus pattern (22 bp):
TTTATCTATTAATATTTTTTTA
Found at i:23065469 original size:14 final size:16
Alignment explanation
Indices: 23065437--23065478 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
23065427 CGGGTATTTT
*
23065437 AGAGAGAAGGGAGAGA
1 AGAGAGAAGGAAGAGA
23065453 AGAG-GAAGGAAGA-A
1 AGAGAGAAGGAAGAGA
*
23065467 AGAGAGAGGGAA
1 AGAGAGAAGGAA
23065479 AGCTCGGTCT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 5 0.22
15 14 0.61
16 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (16 bp):
AGAGAGAAGGAAGAGA
Found at i:23065750 original size:13 final size:12
Alignment explanation
Indices: 23065727--23065861 Score: 50
Period size: 12 Copynumber: 11.2 Consensus size: 12
23065717 GCCATTTTCA
23065727 TTTTTT-TTATT
1 TTTTTTATTATT
23065738 TTTTTTA-TATAT
1 TTTTTTATTAT-T
*
23065750 TTATTTATTATT
1 TTTTTTATTATT
* *
23065762 ATTATTATTATT
1 TTTTTTATTATT
*
23065774 TATTTATTAGATTAGAT
1 T-TTT-TT--ATTA-TT
* *
23065791 TTGTTTAATATT
1 TTTTTTATTATT
*
23065803 TTTTCTA-T-TT
1 TTTTTTATTATT
*
23065813 TTATTTATT-TT
1 TTTTTTATTATT
23065824 TTTATTT-TTATT
1 TTT-TTTATTATT
*
23065836 TTCATTT-TTATT
1 TT-TTTTATTATT
* *
23065848 ATTATTATTATT
1 TTTTTTATTATT
23065860 TT
1 TT
23065862 CTCTTTAAAT
Statistics
Matches: 91, Mismatches: 20, Indels: 25
0.67 0.15 0.18
Matches are distributed among these distances:
10 7 0.08
11 19 0.21
12 45 0.49
13 8 0.09
14 2 0.02
15 2 0.02
16 6 0.07
17 2 0.02
ACGTcount: A:0.23, C:0.01, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTTTTATTATT
Found at i:23065815 original size:18 final size:18
Alignment explanation
Indices: 23065794--23065861 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
23065784 ATTAGATTTG
23065794 TTTA-ATATTTTTTCTATT
1 TTTATATATTTTTT-TATT
*
23065812 TTTATTTATTTTTTTATT
1 TTTATATATTTTTTTATT
*
23065830 TTTATTTTCATTTTTATTATT
1 TTTA-TAT-ATTTTT-TTATT
*
23065851 ATTAT-TATTTT
1 TTTATATATTTT
23065862 CTCTTTAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
18 17 0.39
19 12 0.27
20 7 0.16
21 8 0.18
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATATATTTTTTTATT
Found at i:23065831 original size:6 final size:6
Alignment explanation
Indices: 23065803--23065861 Score: 66
Period size: 6 Copynumber: 9.7 Consensus size: 6
23065793 GTTTAATATT
* *
23065803 TTTTCTA TTTTTA TTTATT- TTTTTA TTTTTA TTTTCA TTTTTA TTATTA
1 TTTT-TA TTTTTA TTT-TTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
23065852 TTATTA TTTT
1 TTTTTA TTTT
23065862 CTCTTTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
5 2 0.04
6 38 0.83
7 6 0.13
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:23065961 original size:60 final size:59
Alignment explanation
Indices: 23065876--23066158 Score: 349
Period size: 60 Copynumber: 4.8 Consensus size: 59
23065866 TTAAATAAAA
*
23065876 TTCAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TT
1 TTCAAAAAATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
* ** *
23065933 TTCAAAAAAGTTTTTTTTTGAGGGAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
1 TTCAAAAAA--TTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
* * * *
23065994 TTCAAAAAAATATTTTTGAGAAAAAGTTGAAATTATCAATTTTCCTTAAAAATAAA-TT
1 TTCAAAAAATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
* * ** *
23066052 TTCAAAAAAGGTTTTTTTTTAGGAGAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
1 TTCAAAAAA--TTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
* * *
23066113 TTCAAAAAATATTTTTGGA-AAAAAGTTGAAAGTATCAATTTTCCTT
1 TTCAAAAAATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
23066159 GTACAAAGCA
Statistics
Matches: 191, Mismatches: 28, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
57 9 0.05
58 35 0.18
59 46 0.24
60 79 0.41
61 22 0.12
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (59 bp):
TTCAAAAAATTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAGTT
Found at i:23066006 original size:119 final size:118
Alignment explanation
Indices: 23065876--23066158 Score: 491
Period size: 119 Copynumber: 2.4 Consensus size: 118
23065866 TTAAATAAAA
*
23065876 TTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
1 TTCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
23065941 A-GTTTTTTTTTGAGG-GAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
66 AGGTTTTTTTTT-AGGAG-AAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
*
23065994 TTCAAAAAAATATTTTTGAGAAAAAGTTGAAATTATCAATTTTCCTTAAAAATAAATTTTCAAAA
1 TTC-AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAA
23066059 AAGGTTTTTTTTTAGGAGAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
65 AAGGTTTTTTTTTAGGAGAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
23066113 TTCAAAAAATATTTTTG-GAAAAAAGTTGAAAGTATCAATTTTCCTT
1 TTCAAAAAATATTTTTGAG-AAAAAGTTGAAAGTATCAATTTTCCTT
23066159 GTACAAAGCA
Statistics
Matches: 158, Mismatches: 3, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
117 1 0.01
118 43 0.27
119 103 0.65
120 11 0.07
ACGTcount: A:0.41, C:0.08, G:0.12, T:0.39
Consensus pattern (118 bp):
TTCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAA
AGGTTTTTTTTTAGGAGAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTT
Found at i:23066187 original size:30 final size:30
Alignment explanation
Indices: 23066151--23066208 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
23066141 AAAGTATCAA
23066151 TTTTCCTTGTACAAAGCAATCATCTTTCTT
1 TTTTCCTTGTACAAAGCAATCATCTTTCTT
23066181 TTTTCCTTGTACAAAGCAATCATCTTTC
1 TTTTCCTTGTACAAAGCAATCATCTTTC
23066209 CAGCTATAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.45
Consensus pattern (30 bp):
TTTTCCTTGTACAAAGCAATCATCTTTCTT
Found at i:23072750 original size:7 final size:7
Alignment explanation
Indices: 23072738--23072817 Score: 65
Period size: 7 Copynumber: 10.7 Consensus size: 7
23072728 AAAAATAATA
23072738 AAAAAAG
1 AAAAAAG
23072745 AAAAAAG
1 AAAAAAG
23072752 AAATGTAAATG
1 AAA---AAA-G
*
23072763 AAAAATG
1 AAAAAAG
23072770 AAAAAATG
1 AAAAAA-G
23072778 AAAAAAG
1 AAAAAAG
23072785 AAAAAA-
1 AAAAAAG
23072791 AAAGAAA-
1 AAA-AAAG
*
23072798 AAAGAAAA
1 AAA-AAAG
23072806 AAAAAAG
1 AAAAAAG
23072813 AAAAA
1 AAAAA
23072818 GTGAATGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
6 3 0.05
7 41 0.65
8 12 0.19
10 3 0.05
11 4 0.06
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.06
Consensus pattern (7 bp):
AAAAAAG
Found at i:23072750 original size:18 final size:17
Alignment explanation
Indices: 23072727--23072817 Score: 87
Period size: 18 Copynumber: 5.3 Consensus size: 17
23072717 GCTTGAAATA
*
23072727 AAAAAATAATAAAAAAAG
1 AAAAAAGAA-AAAAAAAG
** *
23072745 AAAAAAGAAATGTAAATG
1 AAAAAAGAAA-AAAAAAG
* *
23072763 AAAAATG--AAAAAATG
1 AAAAAAGAAAAAAAAAG
23072778 AAAAAAGAAAAAAAAAG
1 AAAAAAGAAAAAAAAAG
23072795 AAAAAAGAAAAAAAAAAG
1 AAAAAAG-AAAAAAAAAG
23072813 AAAAA
1 AAAAA
23072818 GTGAATGAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
15 11 0.18
16 1 0.02
17 15 0.25
18 33 0.55
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (17 bp):
AAAAAAGAAAAAAAAAG
Found at i:23072778 original size:15 final size:15
Alignment explanation
Indices: 23072737--23072807 Score: 70
Period size: 15 Copynumber: 4.4 Consensus size: 15
23072727 AAAAAATAAT
*
23072737 AAAAAAAGAAAAAAG
1 AAAAAATGAAAAAAG
*
23072752 AAATGTAAATGAAAAATG
1 AAA---AAATGAAAAAAG
23072770 AAAAAATGAAAAAAG
1 AAAAAATGAAAAAAG
*
23072785 AAAAAAAAAGAAAAAAG
1 --AAAAAATGAAAAAAG
23072802 AAAAAA
1 AAAAAA
23072808 AAAAGAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
15 20 0.43
17 14 0.30
18 13 0.28
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (15 bp):
AAAAAATGAAAAAAG
Found at i:23072800 original size:33 final size:34
Alignment explanation
Indices: 23072729--23072808 Score: 87
Period size: 33 Copynumber: 2.4 Consensus size: 34
23072719 TTGAAATAAA
** *
23072729 AAAATAAT-AAAAAAAGAAAAAAGAAATGTAAATG
1 AAAA-AATGAAAAAAAGAAAAAAGAAATAAAAAAG
*
23072763 -AAAAATGAAAAAATGAAAAAAGAAA-AAAAAAG
1 AAAAAATGAAAAAAAGAAAAAAGAAATAAAAAAG
23072795 AAAAAA-GAAAAAAA
1 AAAAAATGAAAAAAA
23072809 AAAGAAAAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
32 14 0.36
33 25 0.64
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (34 bp):
AAAAAATGAAAAAAAGAAAAAAGAAATAAAAAAG
Found at i:23073874 original size:43 final size:43
Alignment explanation
Indices: 23073802--23074223 Score: 475
Period size: 43 Copynumber: 10.0 Consensus size: 43
23073792 CAAGGAGCAT
* ** * *
23073802 TTTATTCA-TTTTCAAAGTCAATAAGCCTCTGATTAGAGAAGC
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* * * * * *
23073844 GTTATTTATTTTTCAAAATTGTTAAACCTCTGATTAGATGAGC
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* * * *
23073887 --CATTTACTTTTCAAAAGTTGTTGAGCCTCTGATTAGAAGAGC
1 TTTATTTATTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGC
*
23073929 --CATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
1 TTTATTTA-TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* * * *
23073971 TTTATTTATTTTCCACAGTCGTTAAGTCTCTGATTAGAGGAGC
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
*
23074014 --CATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
*
23074055 TTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGC
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* * * *
23074098 TTTATTCA-TCTTCAAAGTCGTTGAGCCTCTAATTAGAGGAGT
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
*
23074140 TTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGC
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
* * * * *
23074183 TTTATTCA-TCTTCAAAATCGTTAAGCCTCTGCTTAGAGGAG
1 TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG
23074224 TTCTGATCAA
Statistics
Matches: 326, Mismatches: 46, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
41 46 0.14
42 129 0.40
43 146 0.45
44 5 0.02
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (43 bp):
TTTATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
Found at i:23073965 original size:127 final size:126
Alignment explanation
Indices: 23073810--23074223 Score: 485
Period size: 127 Copynumber: 3.3 Consensus size: 126
23073800 ATTTTATTCA
* * * * * *
23073810 TTTTCAAAGTCAATAAGCCTCTGATTAGAGAAGCGTTATTTATTTTTCAAAATTGTTAAACCTCT
1 TTTTCAAAGTCATTAAGCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTCT
* * * *
23073875 GATTAGATGAGCCATTTACTTTTCAAAAGTTGTTGAGCCTCTGATTAGAAGAGCCATTTATT
66 GATTAGAGGAGCCATTTATTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
* * * * *
23073937 TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTATTTTCCACAGTCGTTAAGTCTCT
1 TTTTCAAAGTCATTAAGCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTCT
*
23074002 GATTAGAGGAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA-T
66 GATTAGAGGAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC--CATTTATT
* * * *
23074064 TTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATTCA-TCTTCAAAGTCGTTGAGCCTCT
1 TTTTCAAAGTCATTAAGCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTCT
* ** *
23074128 AATTAGAGGAGTTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAG-C-TTTATT
66 GATTAGAGGAG--CCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
* * * *
23074189 CATCTTCAAAATCGTTAAGCCTCTGCTTAGAGGAG
1 --TTTTCAAAGTCATTAAGCCTCTGATTAGAGGAG
23074224 TTCTGATCAA
Statistics
Matches: 247, Mismatches: 33, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
124 4 0.02
125 1 0.00
126 54 0.22
127 145 0.59
128 43 0.17
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.39
Consensus pattern (126 bp):
TTTTCAAAGTCATTAAGCCTCTGATTAGAGGAGCTTTATTTATTTTTCAAAGTCGTTAAGCCTCT
GATTAGAGGAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
Found at i:23074224 original size:85 final size:84
Alignment explanation
Indices: 23073801--23074225 Score: 466
Period size: 85 Copynumber: 5.0 Consensus size: 84
23073791 TCAAGGAGCA
* * * * * * * *
23073801 TTTTATTCA-TTTTCAAAGTCAATAAGCCTCTGATTAGAGAAGCGTTATTTATTTTTCAAAATTG
1 TTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTA-TTA-TCTTCAAAGTCG
* * *
23073865 TTAAACCTCTGATTAGATGAG
64 TTGAGCCTCTGATTAGAGGAG
** * ** * *
23073886 --CCATTTACTTTTCAAAAGTTGTTGAGCCTCTGATTAGAAGAGCCATTTATT-TTTTCAAAGTC
1 TTTTATTTATTTTTC-AAAGTCATTGAGCCTCTGATTAGAGGAG-C-TTTATTATCTTCAAAGTC
23073948 GTTGAGCCTCTGATTAGAGGAG
63 GTTGAGCCTCTGATTAGAGGAG
* * * * * *
23073970 CTTTATTTATTTTCCACAGTCGTTAAGTCTCTGATTAGAGGAGCCATTTATT-T-TTCAAAGTCG
1 TTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAG-C-TTTATTATCTTCAAAGTCG
23074033 TTGAGCCTCTGATTAGAGGAG
64 TTGAGCCTCTGATTAGAGGAG
*
23074054 CTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATTCATCTTCAAAGTCGT
1 TTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATT-ATCTTCAAAGTCGT
*
23074119 TGAGCCTCTAATTAGAGGAG
65 TGAGCCTCTGATTAGAGGAG
*
23074139 TTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATTCATCTTCAAAATCGT
1 TTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATT-ATCTTCAAAGTCGT
* *
23074204 TAAGCCTCTGCTTAGAGGAG
65 TGAGCCTCTGATTAGAGGAG
23074224 TT
1 TT
23074226 CTGATCAAAT
Statistics
Matches: 296, Mismatches: 35, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
82 6 0.02
83 5 0.02
84 103 0.35
85 167 0.56
86 12 0.04
87 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (84 bp):
TTTTATTTATTTTTCAAAGTCATTGAGCCTCTGATTAGAGGAGCTTTATTATCTTCAAAGTCGTT
GAGCCTCTGATTAGAGGAG
Found at i:23074428 original size:7 final size:6
Alignment explanation
Indices: 23074415--23074488 Score: 66
Period size: 6 Copynumber: 12.3 Consensus size: 6
23074405 CTTCTTTTTA
* *
23074415 TTATTT TGTATTT TGTA-TT TTATTA TT-TTA TTATTT TTATTT TTATTAT
1 TTATTT T-TATTT T-TATTT TTATTT TTATTT TTATTT TTATTT TTATT-T
23074464 TTA--T TTATTT TTATTT TATATTT TT
1 TTATTT TTATTT TTATTT T-TATTT TT
23074489 TTTCTTTATA
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
4 4 0.07
5 7 0.12
6 29 0.49
7 19 0.32
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:23074438 original size:22 final size:21
Alignment explanation
Indices: 23074410--23074534 Score: 116
Period size: 22 Copynumber: 5.8 Consensus size: 21
23074400 TCCACCTTCT
*
23074410 TTTTATTATTTTGTATTTTGTA
1 TTTTATTATTTTTTATTTT-TA
23074432 TTTTATTATTTTATTATTTTTA
1 TTTTATTATTTT-TTATTTTTA
23074454 TTTTTATTATTTATTTATTTTTA
1 -TTTTATTATTT-TTTATTTTTA
23074477 TTTTA-TATTTTTT-TTCTTTA
1 TTTTATTATTTTTTATT-TTTA
*
23074497 TATCTTATGTATTTGTTA--TTTA
1 T-T-TTAT-TATTTTTTATTTTTA
23074519 -TTTATTATTTATTTAT
1 TTTTATTATTT-TTTAT
23074535 GTTAATATAT
Statistics
Matches: 89, Mismatches: 3, Indels: 24
0.77 0.03 0.21
Matches are distributed among these distances:
18 5 0.06
19 9 0.10
20 9 0.10
21 6 0.07
22 26 0.29
23 26 0.29
24 8 0.09
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTTATTATTTTTTATTTTTA
Found at i:23074446 original size:30 final size:29
Alignment explanation
Indices: 23074433--23074532 Score: 94
Period size: 30 Copynumber: 3.2 Consensus size: 29
23074423 TATTTTGTAT
23074433 TTTATTATTTTATTATTTTTATTTTTATTA
1 TTTATT-TTTTATTATTTTTATTTTTATTA
* *
23074463 TTTATTTATTT-TTATTTTATATTTTTTTTC
1 TTTATTT-TTTATTATTTT-TATTTTTATTA
* *
23074493 TTTATATCTTATGTATTTGTTATTTATTTATTA
1 TTTATTTTTTAT-TATTT-TTA-TT-TTTATTA
23074526 TTTATTT
1 TTTATTT
23074533 ATGTTAATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 11
0.76 0.09 0.15
Matches are distributed among these distances:
29 10 0.18
30 25 0.45
31 7 0.12
32 3 0.05
33 11 0.20
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (29 bp):
TTTATTTTTTATTATTTTTATTTTTATTA
Found at i:23074469 original size:4 final size:4
Alignment explanation
Indices: 23074450--23074588 Score: 55
Period size: 4 Copynumber: 35.5 Consensus size: 4
23074440 TTTTATTATT
* *
23074450 TTTA TTTT TATTA TTTA TTTA -TT- TTTA TTT- TATA TTT- TTT- TTCT-
1 TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA
* *
23074494 TTATA TCTTA TGTA TTT- GTTA TTTA TTTA -TTA TTTA TTTA TGTTAA
1 TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TT-A
* * * * * *
23074540 TATA TATA TTTTA TTTA TCTA GTTA TATA TTTA -TTA -TTA TTTA TCTA
1 TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
23074587 TT
1 TT
23074589 GTAATTTATC
Statistics
Matches: 103, Mismatches: 19, Indels: 26
0.70 0.13 0.18
Matches are distributed among these distances:
3 22 0.21
4 65 0.63
5 13 0.13
6 3 0.03
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:23074489 original size:37 final size:38
Alignment explanation
Indices: 23074428--23074532 Score: 101
Period size: 37 Copynumber: 2.7 Consensus size: 38
23074418 TTTTGTATTT
*
23074428 TGTATTTTATTATTTTAT-TATTTTTATTTTTATTAT-TTA
1 TGTA-TTTGTTATTTTATAT-TTTTTATTTTTA-TATCTTA
*
23074467 TTTATTT-TTATTTTATATTTTTT-TTCTTTATATCTTA
1 TGTATTTGTTATTTTATATTTTTTATT-TTTATATCTTA
* *
23074504 TGTATTTGTTATTTATTTATTATTTATTT
1 TGTATTTGTTATTT-TATATTTTTTATTT
23074533 ATGTTAATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 12
0.78 0.06 0.17
Matches are distributed among these distances:
36 5 0.09
37 27 0.48
38 10 0.18
39 12 0.21
40 2 0.04
ACGTcount: A:0.21, C:0.02, G:0.03, T:0.74
Consensus pattern (38 bp):
TGTATTTGTTATTTTATATTTTTTATTTTTATATCTTA
Found at i:23074554 original size:23 final size:23
Alignment explanation
Indices: 23074526--23074583 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
23074516 TTATTTATTA
23074526 TTTATTTAT-GTTAATATATATAT
1 TTTATTTATAGTT-ATATATATAT
*
23074549 TTTATTTATCTAGTTATATATTTAT
1 TTTATTTA--TAGTTATATATATAT
23074574 TATTATTTAT
1 T-TTATTTAT
23074584 CTATTGTAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 8 0.27
24 1 0.03
25 11 0.37
26 10 0.33
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (23 bp):
TTTATTTATAGTTATATATATAT
Found at i:23074583 original size:7 final size:7
Alignment explanation
Indices: 23074411--23074577 Score: 67
Period size: 7 Copynumber: 24.3 Consensus size: 7
23074401 CCACCTTCTT
23074411 TTTATTA
1 TTTATTA
23074418 TTT-TGTA
1 TTTAT-TA
23074425 TTT-TGTA
1 TTTAT-TA
23074432 TTTTATTA
1 -TTTATTA
23074440 TTTTATTA
1 -TTTATTA
23074448 TTT-TTA
1 TTTATTA
23074454 TTT-TTA
1 TTTATTA
23074460 -TTATTTA
1 TTTA-TTA
23074467 TTTATT-
1 TTTATTA
23074473 TTTATT-
1 TTTATTA
23074479 TTATATT-
1 TT-TATTA
* *
23074486 TTTTTTC
1 TTTATTA
23074493 TTTA-TA
1 TTTATTA
23074499 TCTTATGTA
1 T-TTAT-TA
*
23074508 TTTGTTA
1 TTTATTA
23074515 --T-TTA
1 TTTATTA
23074519 TTTATTA
1 TTTATTA
23074526 TTTATTTA
1 TTTA-TTA
*
23074534 TGTTAATA
1 T-TTATTA
*
23074542 TATA-TA
1 TTTATTA
23074548 -TT-TTA
1 TTTATTA
23074553 TTTATCTA
1 TTTAT-TA
*
23074561 GTTATATA
1 TTTAT-TA
23074569 TTTATTA
1 TTTATTA
23074576 TT
1 TT
23074578 ATTTATCTAT
Statistics
Matches: 130, Mismatches: 10, Indels: 40
0.72 0.06 0.22
Matches are distributed among these distances:
4 3 0.02
5 6 0.05
6 28 0.22
7 48 0.37
8 38 0.29
9 7 0.05
ACGTcount: A:0.24, C:0.02, G:0.04, T:0.71
Consensus pattern (7 bp):
TTTATTA
Found at i:23074674 original size:18 final size:18
Alignment explanation
Indices: 23074623--23074679 Score: 73
Period size: 17 Copynumber: 3.3 Consensus size: 18
23074613 TCTGTTAATA
*
23074623 TTTTGATTTATCTGA-TT
1 TTTTTATTTATCTGATTT
*
23074640 TTTTTAATTATCT-ATTT
1 TTTTTATTTATCTGATTT
*
23074657 TTTTTATTTATTTGATTT
1 TTTTTATTTATCTGATTT
23074675 TTTTT
1 TTTTT
23074680 TTCAAAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
16 1 0.03
17 24 0.71
18 9 0.26
ACGTcount: A:0.18, C:0.04, G:0.05, T:0.74
Consensus pattern (18 bp):
TTTTTATTTATCTGATTT
Found at i:23075521 original size:4 final size:4
Alignment explanation
Indices: 23075499--23075531 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
23075489 TTTTTCTGTT
*
23075499 TTTA TTT- TTTA TATA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
23075532 ATTATTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:23075535 original size:3 final size:3
Alignment explanation
Indices: 23075527--23075563 Score: 65
Period size: 3 Copynumber: 12.0 Consensus size: 3
23075517 ATTTATTTAT
23075527 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA
23075564 GATTAGATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 30 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23075685 original size:58 final size:58
Alignment explanation
Indices: 23075622--23076037 Score: 458
Period size: 58 Copynumber: 7.1 Consensus size: 58
23075612 TATTATTATT
* *
23075622 ATTTTCTCTTTAAATAAA-ATTCAAAAACAATATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTTCTCTTAAAATAAAGTTTCAAAAA-AATATTTTTGAGAAAAAGTTGAAAGTATCA
* * *
23075680 ATTTTC-CTTGAAAAT-AAGCTTTCTAAAAAATGTTTTTGAGAAAAAGTTCAAAGTATCA
1 ATTTTCTCTT-AAAATAAAG-TTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
* *
23075738 ATTTT-TCTTGAAATTAAAGTTTCCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTTCTCTT-AAAATAAAGTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
* * *
23075796 ATTTT-TCTTAAAAATAAA-TTTTAAAAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCA
1 ATTTTCTCTT-AAAATAAAGTTTCAAAAAAA--TATTTTTGAGAAAAAGTTGAAAGTATCA
*
23075855 ATTTT-TCTCAAAATTAAAGTTTTCAAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCA
1 ATTTTCTCTTAAAA-TAAAG-TTTCAAAAAAATATTTTTGAGA-AAAAGTTGAAAGTATCA
* * * * * *
23075914 ATTTTC-CTTAAAAATAAATTTTCAAAAAAGGTTTTTTTTTAGGAGAAGTTGAAAGTATCA
1 ATTTTCTCTT-AAAATAAAGTTTCAAAAAA--ATATTTTTGAGAAAAAGTTGAAAGTATCA
*
23075974 ATTTTC-CTCAAAATTAAAGTTTTC-AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTTCTCTTAAAA-TAAAG-TTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
23076032 ATTTTC
1 ATTTTC
23076038 GTTGTACAAA
Statistics
Matches: 307, Mismatches: 33, Indels: 36
0.82 0.09 0.10
Matches are distributed among these distances:
57 14 0.05
58 148 0.48
59 87 0.28
60 43 0.14
61 15 0.05
ACGTcount: A:0.43, C:0.07, G:0.11, T:0.38
Consensus pattern (58 bp):
ATTTTCTCTTAAAATAAAGTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
Found at i:23075743 original size:27 final size:27
Alignment explanation
Indices: 23075712--23075801 Score: 69
Period size: 27 Copynumber: 3.2 Consensus size: 27
23075702 CTAAAAAATG
23075712 TTTTTGAGAAAAAGTTCAAAGTATCAA
1 TTTTTGAGAAAAAGTTCAAAGTATCAA
**
23075739 TTTTTCTTGA-AATTAAAGTTTCCAAAAAAT--A
1 --TTT-TTGAGAA--AAAG-TT-CAAAGTATCAA
*
23075770 TTTTTGAGAAAAAGTTGAAAGTATCAA
1 TTTTTGAGAAAAAGTTCAAAGTATCAA
23075797 TTTTT
1 TTTTT
23075802 CTTAAAAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 18
0.68 0.07 0.25
Matches are distributed among these distances:
25 5 0.10
26 2 0.04
27 10 0.21
28 4 0.08
29 10 0.21
30 4 0.08
31 5 0.10
32 2 0.04
33 6 0.12
ACGTcount: A:0.41, C:0.07, G:0.12, T:0.40
Consensus pattern (27 bp):
TTTTTGAGAAAAAGTTCAAAGTATCAA
Found at i:23075927 original size:118 final size:118
Alignment explanation
Indices: 23075641--23076037 Score: 590
Period size: 118 Copynumber: 3.4 Consensus size: 118
23075631 TTAAATAAAA
* *
23075641 TTCAAAAACAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT-A
1 TTCAAAAA-AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAA-ATTT-TAA
* * * **
23075705 AAAAA--TGTTTTTGAGAAAAAGTTCAAAGTATCAATTTTTCTTGAAATTAAAG-T
63 AAAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTT
* *
23075758 TTCCAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTAAAAA
1 TTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAAAAA
23075823 AAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTT
66 AAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTT
23075876 TTCAAAAAAATATTTTTG-GAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAA
1 TTCAAAAAAATATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT-AAA
* * * *
23075940 AAAGGTTTTTTTTTAGGAGAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTT
64 AAAAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTT
23075995 TTC-AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTC
1 TTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTC
23076038 GTTGTACAAA
Statistics
Matches: 258, Mismatches: 15, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
114 1 0.00
115 9 0.03
116 45 0.17
117 51 0.20
118 93 0.36
119 59 0.23
ACGTcount: A:0.43, C:0.07, G:0.12, T:0.38
Consensus pattern (118 bp):
TTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTAAAAA
AAGTTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTT
Found at i:23076849 original size:34 final size:34
Alignment explanation
Indices: 23076811--23076876 Score: 105
Period size: 34 Copynumber: 1.9 Consensus size: 34
23076801 ATTGTAGTGG
* *
23076811 TCAAACTATATATAGAGTTATTAAAGTAATTCGA
1 TCAAACAATATATAGAATTATTAAAGTAATTCGA
*
23076845 TCAAACAATATGTAGAATTATTAAAGTAATTC
1 TCAAACAATATATAGAATTATTAAAGTAATTC
23076877 TAGGCCAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.45, C:0.09, G:0.11, T:0.35
Consensus pattern (34 bp):
TCAAACAATATATAGAATTATTAAAGTAATTCGA
Found at i:23078542 original size:22 final size:22
Alignment explanation
Indices: 23078517--23078580 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 22
23078507 ATTTTAGAAT
*
23078517 ATTATGGTCAAAAGTCTTACAA
1 ATTATGGCCAAAAGTCTTACAA
* * *
23078539 ATTAT-GCCACAGGTCTTAAAA
1 ATTATGGCCAAAAGTCTTACAA
* *
23078560 ATTATGCCCGAAAGTCTTACA
1 ATTATGGCCAAAAGTCTTACA
23078581 TATCTTTGAA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
21 17 0.53
22 15 0.47
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.30
Consensus pattern (22 bp):
ATTATGGCCAAAAGTCTTACAA
Found at i:23078734 original size:23 final size:23
Alignment explanation
Indices: 23078697--23078740 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
23078687 TTTGATTTTG
* *
23078697 GTGCCAGCTAGATTGGGCTTAGT
1 GTGCCAACTAAATTGGGCTTAGT
23078720 GTGCCAACTAAATTGGGCTTA
1 GTGCCAACTAAATTGGGCTTA
23078741 AAATGCAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.30
Consensus pattern (23 bp):
GTGCCAACTAAATTGGGCTTAGT
Found at i:23078896 original size:86 final size:87
Alignment explanation
Indices: 23078743--23078906 Score: 199
Period size: 86 Copynumber: 1.9 Consensus size: 87
23078733 TGGGCTTAAA
* * *
23078743 ATGCAAGCTAAACTGGGCTTACATATCATCTAAGTGCCAGCTGATATAGGTTTAGGTGCCACGTA
1 ATGCAAGCTAAACTGGGCTTAAATATCATCTAAGTGCCAGCTGATATAGGCTTAGGTGCAACGTA
23078808 AACT-GGCTTAAAATTTTAACT
66 AACTGGGCTTAAAATTTTAACT
* * * * * * *
23078829 ATGCTAGCTAAA-TGGGATTTAAATATCATCTATGTGCTAGTTGATCTAGGCTTAGGTGTAA-GC
1 ATGCAAGCTAAACTGGG-CTTAAATATCATCTAAGTGCCAGCTGATATAGGCTTAGGTGCAACG-
23078892 TAAACTGGGCTTAAA
64 TAAACTGGGCTTAAA
23078907 GTGCCAGCTA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
85 5 0.08
86 52 0.80
87 8 0.12
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.32
Consensus pattern (87 bp):
ATGCAAGCTAAACTGGGCTTAAATATCATCTAAGTGCCAGCTGATATAGGCTTAGGTGCAACGTA
AACTGGGCTTAAAATTTTAACT
Found at i:23078917 original size:23 final size:23
Alignment explanation
Indices: 23078889--23078936 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
23078879 CTTAGGTGTA
23078889 AGCTAAACTGGGCTTAAAGTGCC
1 AGCTAAACTGGGCTTAAAGTGCC
* * **
23078912 AGCTAATCTTGTTTTAAAGTGCC
1 AGCTAAACTGGGCTTAAAGTGCC
23078935 AG
1 AG
23078937 GTAATTTAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (23 bp):
AGCTAAACTGGGCTTAAAGTGCC
Found at i:23080820 original size:23 final size:22
Alignment explanation
Indices: 23080790--23080833 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
23080780 TCTTTGCTTT
23080790 TTTTTTGTTCTTTTTTGTAAACG
1 TTTTTTG-TCTTTTTTGTAAACG
*
23080813 TTTTTTGTCTTTTTTTTAAAC
1 TTTTTTGTCTTTTTTGTAAAC
23080834 ATTTGACTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.14, C:0.09, G:0.09, T:0.68
Consensus pattern (22 bp):
TTTTTTGTCTTTTTTGTAAACG
Found at i:23085065 original size:35 final size:35
Alignment explanation
Indices: 23085012--23085093 Score: 119
Period size: 35 Copynumber: 2.3 Consensus size: 35
23085002 TATCATAAGG
* * *
23085012 ATACATGTACTACCTATTAAGATGCCTAAAATGTG
1 ATACATGTACTACATATTAAGATACCTAAAATGTA
* *
23085047 ATGCATGTAGTACATATTAAGATACCTAAAATGTA
1 ATACATGTACTACATATTAAGATACCTAAAATGTA
23085082 ATACATGTACTA
1 ATACATGTACTA
23085094 TTTTATTAGA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (35 bp):
ATACATGTACTACATATTAAGATACCTAAAATGTA
Found at i:23086779 original size:15 final size:16
Alignment explanation
Indices: 23086752--23086782 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
23086742 AAAAAAAATT
23086752 TTATTAGTTTTTTTAA
1 TTATTAGTTTTTTTAA
23086768 TTATTA-TTTTTTTAA
1 TTATTAGTTTTTTTAA
23086783 AGAAAAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (16 bp):
TTATTAGTTTTTTTAA
Found at i:23087158 original size:25 final size:25
Alignment explanation
Indices: 23087114--23087174 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
23087104 ACATATGTAT
*
23087114 AAAATAAACAATAATAGTAAA-AAGA
1 AAAATAAAAAATAATAGTAAATAA-A
*
23087139 TAAATAAATAAATAAT-GTAAATAAA
1 AAAATAAA-AAATAATAGTAAATAAA
23087164 AAAATAAAAAA
1 AAAATAAAAAA
23087175 ATACTTGATG
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 3 0.10
25 20 0.65
26 8 0.26
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAATAATAGTAAATAAA
Found at i:23098923 original size:24 final size:24
Alignment explanation
Indices: 23098895--23098943 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
23098885 ATGACATAAT
* *
23098895 TTTATTTATTGACAGTGTATAAAA
1 TTTATATATTGACAGTATATAAAA
* *
23098919 TTTATATATTTACAGTATATCAAA
1 TTTATATATTGACAGTATATAAAA
23098943 T
1 T
23098944 ACAAACTCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.47
Consensus pattern (24 bp):
TTTATATATTGACAGTATATAAAA
Found at i:23099585 original size:28 final size:28
Alignment explanation
Indices: 23099550--23099619 Score: 97
Period size: 28 Copynumber: 2.5 Consensus size: 28
23099540 GGTCATTTAA
23099550 AATATTGATTTTGATT-CCTCAAGAAAAC
1 AATATTGATTTTGATTCCCT-AAGAAAAC
*
23099578 AATATTGATTTTGATTCCCTAAGAAAGC
1 AATATTGATTTTGATTCCCTAAGAAAAC
* *
23099606 AATGTTAATTTTGA
1 AATATTGATTTTGA
23099620 CTTGGTTCCC
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
28 35 0.92
29 3 0.08
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (28 bp):
AATATTGATTTTGATTCCCTAAGAAAAC
Found at i:23101395 original size:27 final size:25
Alignment explanation
Indices: 23101335--23101395 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 25
23101325 CAATTTTTTT
*
23101335 AATTTTTATAAAATATAAAATATAA
1 AATTTTTATAAAATAAAAAATATAA
23101360 AATTTTTTATTTAATAATAAAAAAT-TAA
1 AA-TTTTTA--TAA-AATAAAAAATATAA
23101388 AATTTTTA
1 AATTTTTA
23101396 GTATTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
25 2 0.06
26 6 0.19
27 6 0.19
28 8 0.26
29 9 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
AATTTTTATAAAATAAAAAATATAA
Found at i:23101674 original size:13 final size:14
Alignment explanation
Indices: 23101640--23101674 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
23101630 AATTAAATCT
23101640 AAAATTTTTTTATA
1 AAAATTTTTTTATA
23101654 AAACATTTTTTT-TA
1 AAA-ATTTTTTTATA
23101668 AAAATTT
1 AAAATTT
23101675 AAATTCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 4 0.20
14 8 0.40
15 8 0.40
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (14 bp):
AAAATTTTTTTATA
Found at i:23102725 original size:19 final size:17
Alignment explanation
Indices: 23102698--23102752 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
23102688 GGTAATCTAC
23102698 ACCAGAAAAAAAAAAACAA
1 ACCA-AAAAAAAAAAA-AA
* *
23102717 ACCATAAAAAAAGAAAA
1 ACCAAAAAAAAAAAAAA
23102734 ACCAAAAAAAAAAAGAAA
1 ACCAAAAAAAAAAA-AAA
23102752 A
1 A
23102753 GGAGTTTTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
17 14 0.45
18 13 0.42
19 4 0.13
ACGTcount: A:0.80, C:0.13, G:0.05, T:0.02
Consensus pattern (17 bp):
ACCAAAAAAAAAAAAAA
Found at i:23104002 original size:17 final size:17
Alignment explanation
Indices: 23103964--23104013 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
23103954 TCTACTTTCT
* *
23103964 ATTTTGATTTGATTTGA
1 ATTTTTATTTGATTTTA
*
23103981 TTTTTTATTTGATTTTA
1 ATTTTTATTTGATTTTA
23103998 ATTTTT-TTTAGATTTT
1 ATTTTTATTT-GATTTT
23104014 TTATTTTTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 3 0.11
17 25 0.89
ACGTcount: A:0.20, C:0.00, G:0.10, T:0.70
Consensus pattern (17 bp):
ATTTTTATTTGATTTTA
Found at i:23107035 original size:48 final size:48
Alignment explanation
Indices: 23106979--23107070 Score: 157
Period size: 48 Copynumber: 1.9 Consensus size: 48
23106969 CCCAGACCAG
*
23106979 CTACATCAATGGTATTTTCAGAGCTTGGCGGACACTCTAAAGGATACA
1 CTACATCAATGGTATTTTCAGAGCTTGGCGGACACTCAAAAGGATACA
* *
23107027 CTACATCAATGGTATTTTCATAGCTTGGCGGACGCTCAAAAGGA
1 CTACATCAATGGTATTTTCAGAGCTTGGCGGACACTCAAAAGGA
23107071 CACATAGGGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (48 bp):
CTACATCAATGGTATTTTCAGAGCTTGGCGGACACTCAAAAGGATACA
Found at i:23109267 original size:18 final size:17
Alignment explanation
Indices: 23109217--23109268 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
23109207 TATACACATA
*
23109217 TGTTATTTTTTATTTCTT
1 TGTTA-TTTTTATTTTTT
*
23109235 TATCTATTTTTATTTTTT
1 TGT-TATTTTTATTTTTT
23109253 TGTTATTTTTAATTTT
1 TGTTATTTTT-ATTTT
23109269 ATTTAATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 7 0.24
18 20 0.69
19 2 0.07
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (17 bp):
TGTTATTTTTATTTTTT
Found at i:23110217 original size:4 final size:4
Alignment explanation
Indices: 23110208--23110354 Score: 115
Period size: 4 Copynumber: 37.0 Consensus size: 4
23110198 TTTCATTTTC
* * * * *
23110208 ATTT ATTT ATTT ATTT -TTC ATTT ATTT GTAT ATTTT CTTT A-TT AATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATTT
* * * * *
23110255 GTTT ATTT GTTT ATTT A-TT -TTT ATTT ATTT AGTG GTTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT
* *
23110301 GTTT ATTTT ATTT ATTT ATTT ATTTT ATTT GA-TT ATTT ATGT ATTT ATTT
1 ATTT A-TTT ATTT ATTT ATTT A-TTT ATTT -ATTT ATTT ATTT ATTT ATTT
23110351 ATTT
1 ATTT
23110355 GTAAATAATT
Statistics
Matches: 111, Mismatches: 23, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
3 10 0.09
4 90 0.81
5 11 0.10
ACGTcount: A:0.21, C:0.01, G:0.06, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:23110261 original size:20 final size:20
Alignment explanation
Indices: 23110233--23110280 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
23110223 TTTCATTTAT
*
23110233 TTGTATATTTTCTTTATTAA
1 TTGTTTATTTTCTTTATTAA
* *
23110253 TTGTTTA-TTTGTTTATTTA
1 TTGTTTATTTTCTTTATTAA
23110272 TT-TTTATTT
1 TTGTTTATTT
23110281 ATTTAGTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 4 0.17
19 14 0.58
20 6 0.25
ACGTcount: A:0.19, C:0.02, G:0.06, T:0.73
Consensus pattern (20 bp):
TTGTTTATTTTCTTTATTAA
Found at i:23110312 original size:17 final size:17
Alignment explanation
Indices: 23110197--23110354 Score: 128
Period size: 17 Copynumber: 9.2 Consensus size: 17
23110187 TGTTGGTATA
23110197 ATTTCATTTTCATTTATTT
1 ATTT-ATTTT-ATTTATTT
23110216 ATTTATTTTTCATTTATTT
1 ATTTA-TTTT-ATTTATTT
* * *
23110235 GTATATTTTCTTTA-TT
1 ATTTATTTTATTTATTT
* * *
23110251 AATT-GTTTATTTGTTT
1 ATTTATTTTATTTATTT
23110267 ATTTATTTTTATTTATTT
1 ATTTA-TTTTATTTATTT
* **
23110285 A-GTGGTTTATTTATTT
1 ATTTATTTTATTTATTT
*
23110301 GTTTATTTTATTTATTT
1 ATTTATTTTATTTATTT
23110318 ATTTATTTTATTTGA-TT
1 ATTTATTTTATTT-ATTT
*
23110335 ATTTA-TGTATTTATTT
1 ATTTATTTTATTTATTT
23110351 ATTT
1 ATTT
23110355 GTAAATAATT
Statistics
Matches: 111, Mismatches: 21, Indels: 17
0.74 0.14 0.11
Matches are distributed among these distances:
15 7 0.06
16 31 0.28
17 36 0.32
18 17 0.15
19 20 0.18
ACGTcount: A:0.21, C:0.03, G:0.06, T:0.71
Consensus pattern (17 bp):
ATTTATTTTATTTATTT
Found at i:23110368 original size:29 final size:28
Alignment explanation
Indices: 23110306--23110369 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 28
23110296 TATTTGTTTA
* ** *
23110306 TTTTATTTATTTATTTATTTTATTTGAT
1 TTTTATGTATTTATTTATTTTAAATAAT
23110334 TATTTATGTATTTATTTATTTGTAAATAAT
1 T-TTTATGTATTTATTTATTT-TAAATAAT
23110364 TTTTAT
1 TTTTAT
23110370 AAAAAAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 1 0.03
29 23 0.77
30 6 0.20
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.69
Consensus pattern (28 bp):
TTTTATGTATTTATTTATTTTAAATAAT
Found at i:23110507 original size:60 final size:59
Alignment explanation
Indices: 23110393--23110552 Score: 225
Period size: 59 Copynumber: 2.7 Consensus size: 59
23110383 AATCTTTTCA
* *
23110393 AATAAAAATGAATCTTATC-ACATATTGAAGGGTTCAAATTTCTAAAAATAAATTTTTG
1 AATAAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTTCTAAAAATAAATTTTTG
* * *
23110451 AATAAAAAATGAATCTTACCAACATGTTGGATGGTTTAAATTTCTAAAAA-AGAATTTTTG
1 AAT-AAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTTCTAAAAATA-AATTTTTG
* *
23110511 AATAAAAATGAATCTTGCCAATATATTGGAGGGTTCAAATTT
1 AATAAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTT
23110553 AAAAAAAAAT
Statistics
Matches: 89, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
58 3 0.03
59 50 0.56
60 36 0.40
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.35
Consensus pattern (59 bp):
AATAAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTTCTAAAAATAAATTTTTG
Found at i:23110560 original size:60 final size:58
Alignment explanation
Indices: 23110378--23110561 Score: 208
Period size: 59 Copynumber: 3.1 Consensus size: 58
23110368 ATAAAAAAAT
* * * *
23110378 AAAAAAATCTTTTCAAATAAAAATGAATCTTATC-ACATATTGAAGGGTTCAAATTTCTAA
1 AAAAAAAT-TTTT-GAATAAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTT-AAA
* * * * *
23110438 AAATAAATTTTTGAATAAAAAATGAATCTTACCAACATGTTGGATGGTTTAAATTTCTAA
1 AAAAAAATTTTTGAAT-AAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTT-AAA
* * *
23110498 AAAAGAATTTTTGAATAAAAATGAATCTTGCCAATATATTGGAGGGTTCAAATTTAAA
1 AAAAAAATTTTTGAATAAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTTAAA
23110556 AAAAAA
1 AAAAAA
23110562 TAAAATTTTG
Statistics
Matches: 106, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
58 10 0.09
59 53 0.50
60 43 0.41
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (58 bp):
AAAAAAATTTTTGAATAAAAATGAATCTTACCAACATATTGGAGGGTTCAAATTTAAA
Found at i:23111181 original size:10 final size:10
Alignment explanation
Indices: 23111166--23111195 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
23111156 GCAAATAAAA
23111166 TAAAAATAAT
1 TAAAAATAAT
23111176 TAAAAAGTAAT
1 TAAAAA-TAAT
23111187 TAAAAATAA
1 TAAAAATAA
23111196 AAAAAAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (10 bp):
TAAAAATAAT
Found at i:23112623 original size:18 final size:16
Alignment explanation
Indices: 23112587--23112627 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
23112577 TTGGGTTCTG
23112587 TGAATTTATTTCATTT
1 TGAATTTATTTCATTT
*
23112603 TGAATTTGATTTGATTTT
1 TGAATTT-ATTTCA-TTT
23112621 TGAATTT
1 TGAATTT
23112628 CCTAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.24, C:0.02, G:0.12, T:0.61
Consensus pattern (16 bp):
TGAATTTATTTCATTT
Found at i:23112962 original size:23 final size:22
Alignment explanation
Indices: 23112928--23112973 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
23112918 ATTTTTAGAA
* * *
23112928 TTTTTATTTTTACTTATTATTT
1 TTTTTATCTTTAATTACTATTT
23112950 TTTTTCATCTTTAATTACTATTT
1 TTTTT-ATCTTTAATTACTATTT
23112973 T
1 T
23112974 ACTCATTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.20, C:0.09, G:0.00, T:0.72
Consensus pattern (22 bp):
TTTTTATCTTTAATTACTATTT
Found at i:23121015 original size:10 final size:10
Alignment explanation
Indices: 23121000--23121039 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
23120990 TAGAAGATTA
23121000 AAAAAAAAAG
1 AAAAAAAAAG
23121010 AAAAAAAAATG
1 AAAAAAAAA-G
**
23121021 TCAAAAAAAG
1 AAAAAAAAAG
23121031 AAAAAAAAA
1 AAAAAAAAA
23121040 CTCAGCCGAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
10 17 0.68
11 8 0.32
ACGTcount: A:0.85, C:0.03, G:0.07, T:0.05
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:23127084 original size:39 final size:37
Alignment explanation
Indices: 23127017--23127091 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 37
23127007 GATTTGCTTC
* *
23127017 AAAAAAAAAAACAAAATCAAAATCAAAAATCAAAATA
1 AAAAAAAAAAACAAAATCAAAATAAAAAATAAAAATA
23127054 AAAAGAAAGAAAACAAAA-CAAAATAAAAAAATAAAAAT
1 AAAA-AAA-AAAACAAAATCAAAAT-AAAAAATAAAAAT
23127092 TTTCTTTCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
37 4 0.12
38 9 0.27
39 20 0.61
ACGTcount: A:0.80, C:0.08, G:0.03, T:0.09
Consensus pattern (37 bp):
AAAAAAAAAAACAAAATCAAAATAAAAAATAAAAATA
Found at i:23134015 original size:28 final size:28
Alignment explanation
Indices: 23133958--23134015 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
23133948 TATATACATA
* *
23133958 TGTTATTATTTATTTATTTATTTATTTT
1 TGTTATTATTTATTTATTTAATTATCTT
23133986 TGTTATT-TTTAATTTTATTTAATT-TCTT
1 TGTTATTATTT-A-TTTATTTAATTATCTT
23134014 TG
1 TG
23134016 ATATCCTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
27 3 0.12
28 13 0.50
29 10 0.38
ACGTcount: A:0.21, C:0.02, G:0.05, T:0.72
Consensus pattern (28 bp):
TGTTATTATTTATTTATTTAATTATCTT
Found at i:23135140 original size:321 final size:321
Alignment explanation
Indices: 23134553--23135161 Score: 1112
Period size: 321 Copynumber: 1.9 Consensus size: 321
23134543 TCTCTAACAA
* * *
23134553 TTTTTTTCAATTTTCAACAATATTCTTCAAAAACTGACAAAGCATTCAACTGACGTTCATAAGCT
1 TTTTGTTCAATTTTCAACAATATTCTTAAAAAACTGACAAAGCATTCAACCGACGTTCATAAGCT
* *
23134618 TTAGAGAGAGAAGTAGAGAAAAAGAAAGAGAGGAGAGAAAGAAAAAAGAAATCTAAGGAAAGAAA
66 TTAGAGAGAGAAGCAGAGAAAAAGAAAGAAAGGAGAGAAAGAAAAAAGAAATCTAAGGAAAGAAA
*
23134683 AAACAAATTTGCAAGTTTTATAATGTCCTAGAACAATGTCGTTTTGAGTAAGGTTAAACCCTAAA
131 AAACAAATTTGCAAGTTTTATAATGTCCTACAACAATGTCGTTTTGAGTAAGGTTAAACCCTAAA
23134748 ATCCGTGTGTTTTGCATTGACCCAACTCGAACCATACCGCACTACCCAACGACTCACAATCCTCC
196 ATCCGTGTGTTTTGCATTGACCCAACTCGAACCATACCGCACTACCCAACGACTCACAATCCTCC
23134813 TAAGCTAATTAAGCTTCTAAGCCGAGCCAACTAGTCTTGAGCCGTGCCATATCCTGTTACC
261 TAAGCTAATTAAGCTTCTAAGCCGAGCCAACTAGTCTTGAGCCGTGCCATATCCTGTTACC
23134874 TTTTGTTCAATTTTCAACAATATTCTTAAAAAACTGACAAAGCATTCAACCGACGTTCATAAGCT
1 TTTTGTTCAATTTTCAACAATATTCTTAAAAAACTGACAAAGCATTCAACCGACGTTCATAAGCT
* *
23134939 TTAGAGAGAGAAGCAGAGAAAATGAAAGAAATGAGAGAAAGAAAAAAGAAATCTAAGGAAAGAAA
66 TTAGAGAGAGAAGCAGAGAAAAAGAAAGAAAGGAGAGAAAGAAAAAAGAAATCTAAGGAAAGAAA
23135004 AAA-AAATTTTGCAAGTTTTATAATGTCCTACAACAATGTCGTTTTGAGTAAGGTTAAACCCTAA
131 AAACAAA-TTTGCAAGTTTTATAATGTCCTACAACAATGTCGTTTTGAGTAAGGTTAAACCCTAA
23135068 AATCCGTGTGTTTTGCATTGACCCAACTCGAACCATACCGCACTACCCAACGACTCACAATCCTC
195 AATCCGTGTGTTTTGCATTGACCCAACTCGAACCATACCGCACTACCCAACGACTCACAATCCTC
* *
23135133 CTAAGCTAATTGAGCTTCTAAGTCGAGCC
260 CTAAGCTAATTAAGCTTCTAAGCCGAGCC
23135162 CATCTACCGT
Statistics
Matches: 277, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
320 3 0.01
321 274 0.99
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (321 bp):
TTTTGTTCAATTTTCAACAATATTCTTAAAAAACTGACAAAGCATTCAACCGACGTTCATAAGCT
TTAGAGAGAGAAGCAGAGAAAAAGAAAGAAAGGAGAGAAAGAAAAAAGAAATCTAAGGAAAGAAA
AAACAAATTTGCAAGTTTTATAATGTCCTACAACAATGTCGTTTTGAGTAAGGTTAAACCCTAAA
ATCCGTGTGTTTTGCATTGACCCAACTCGAACCATACCGCACTACCCAACGACTCACAATCCTCC
TAAGCTAATTAAGCTTCTAAGCCGAGCCAACTAGTCTTGAGCCGTGCCATATCCTGTTACC
Found at i:23135258 original size:4 final size:4
Alignment explanation
Indices: 23135249--23135377 Score: 56
Period size: 4 Copynumber: 32.2 Consensus size: 4
23135239 TTCATTTTCA
* * * * *
23135249 TTAT TTAT TTAT TT-T TCAT TTAT TTGA- ATATT TTCT TTAT TAAT TGTTT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT-AT TTA-T TTAT TTAT TTAT T-TAT
* ** *
23135298 TTAT TTAT TT-T ATTA- TTAG TGGT TTAT TTAT TT-G TT-T TTATT TTAAT
1 TTAT TTAT TTAT -TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TT-AT
*
23135345 TTAT TTAT TTGA- TTAT TTAT GTAT TTAT TTAT T
1 TTAT TTAT TT-AT TTAT TTAT TTAT TTAT TTAT T
23135378 GTAAATATTT
Statistics
Matches: 93, Mismatches: 19, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
3 12 0.13
4 69 0.74
5 11 0.12
6 1 0.01
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.70
Consensus pattern (4 bp):
TTAT
Found at i:23135352 original size:24 final size:24
Alignment explanation
Indices: 23135297--23135377 Score: 80
Period size: 24 Copynumber: 3.4 Consensus size: 24
23135287 ATTAATTGTT
* *
23135297 TTTATTTATTTTATTA-TTA-GTGG
1 TTTATTTATTTGATTATTTATGT-A
*
23135320 TTTATTTATTTG-TT-TTTATTTTAA
1 TTTATTTATTTGATTATTTA-TGT-A
23135344 TTTATTTATTTGATTATTTATGTA
1 TTTATTTATTTGATTATTTATGTA
23135368 TTTATTTATT
1 TTTATTTATT
23135378 GTAAATATTT
Statistics
Matches: 48, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
22 5 0.10
23 11 0.23
24 24 0.50
25 4 0.08
26 4 0.08
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (24 bp):
TTTATTTATTTGATTATTTATGTA
Found at i:23135387 original size:47 final size:47
Alignment explanation
Indices: 23135297--23135388 Score: 107
Period size: 47 Copynumber: 2.0 Consensus size: 47
23135287 ATTAATTGTT
* * ***
23135297 TTTATTTATTTTATTATTAGTGGTTTATTTATTTGTTTTTATTTTAA
1 TTTATTTATTTGATTATTAGTGATTTATTTATTTGTAAATATTTTAA
23135344 TTTATTTATTTGATTATTTA-TGTATTTATTTA-TTGTAAATATTTT
1 TTTATTTATTTGATTA-TTAGTG-ATTTATTTATTTGTAAATATTTT
23135389 TATAAAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
47 27 0.71
48 11 0.29
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (47 bp):
TTTATTTATTTGATTATTAGTGATTTATTTATTTGTAAATATTTTAA
Found at i:23144936 original size:14 final size:13
Alignment explanation
Indices: 23144908--23144935 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23144898 ACGGGGAATG
23144908 AAGCAAAAAAAAA
1 AAGCAAAAAAAAA
23144921 AAGCAAAAAAAAA
1 AAGCAAAAAAAAA
23144934 AA
1 AA
23144936 AATGAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.86, C:0.07, G:0.07, T:0.00
Consensus pattern (13 bp):
AAGCAAAAAAAAA
Found at i:23144944 original size:16 final size:16
Alignment explanation
Indices: 23144912--23144995 Score: 71
Period size: 16 Copynumber: 5.1 Consensus size: 16
23144902 GGAATGAAGC
*
23144912 AAAAAAAAAAA-GCAA
1 AAAAAAAAAAATGAAA
23144927 AAAAAAAAAAATGAAA
1 AAAAAAAAAAATGAAA
** * * *
23144943 AATGAAGAGAATTAAA
1 AAAAAAAAAAATGAAA
*
23144959 AAAAATGAAAAATTGAAA
1 AAAAA--AAAAAATGAAA
23144977 AAATAAAAAAAATGAAA
1 AAA-AAAAAAAATGAAA
23144994 AA
1 AA
23144996 TGAAAATAAG
Statistics
Matches: 52, Mismatches: 13, Indels: 6
0.73 0.18 0.08
Matches are distributed among these distances:
15 11 0.21
16 17 0.33
17 12 0.23
18 10 0.19
19 2 0.04
ACGTcount: A:0.79, C:0.01, G:0.10, T:0.11
Consensus pattern (16 bp):
AAAAAAAAAAATGAAA
Found at i:23144959 original size:25 final size:25
Alignment explanation
Indices: 23144925--23145001 Score: 104
Period size: 26 Copynumber: 3.1 Consensus size: 25
23144915 AAAAAAAAGC
23144925 AAAA-AAAAAAAAATGAAAAATGAA
1 AAAATAAAAAAAAATGAAAAATGAA
* *
23144949 GAGAATTAAAAAAAATGAAAAATTGAA
1 -AAAATAAAAAAAAATGAAAAA-TGAA
23144976 AAAAT-AAAAAAAATGAAAAATGAA
1 AAAATAAAAAAAAATGAAAAATGAA
23145000 AA
1 AA
23145002 TAAGGGAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
24 6 0.13
25 18 0.38
26 19 0.40
27 4 0.09
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (25 bp):
AAAATAAAAAAAAATGAAAAATGAA
Found at i:23144972 original size:17 final size:20
Alignment explanation
Indices: 23144940--23144979 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
23144930 AAAAAAAATG
23144940 AAAAATGAAGAGAATT-AAA
1 AAAAATGAAGAGAATTGAAA
23144959 AAAAATGAA-A-AATTGAAA
1 AAAAATGAAGAGAATTGAAA
23144977 AAA
1 AAA
23144980 TAAAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 4 0.20
18 7 0.35
19 9 0.45
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.15
Consensus pattern (20 bp):
AAAAATGAAGAGAATTGAAA
Found at i:23145011 original size:26 final size:24
Alignment explanation
Indices: 23144925--23145001 Score: 111
Period size: 25 Copynumber: 3.1 Consensus size: 24
23144915 AAAAAAAAGC
23144925 AAAAA-AAAAAAAATGAAAAATGA
1 AAAAATAAAAAAAATGAAAAATGA
*
23144948 AGAGAATTAAAAAAAATGAAAAATTGA
1 A-A-AAATAAAAAAAATGAAAAA-TGA
23144975 AAAAATAAAAAAAATGAAAAATGA
1 AAAAATAAAAAAAATGAAAAATGA
23144999 AAA
1 AAA
23145002 TAAGGGAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.02
24 7 0.15
25 20 0.42
26 16 0.33
27 4 0.08
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (24 bp):
AAAAATAAAAAAAATGAAAAATGA
Found at i:23146165 original size:63 final size:63
Alignment explanation
Indices: 23146098--23146392 Score: 286
Period size: 63 Copynumber: 4.7 Consensus size: 63
23146088 ACCATATTTG
23146098 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCA
1 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCA
* * ** * ** *
23146161 ACTTATAGGCTTAGACCAAGTCATCATTTTTTACCTCAACTCTATCCAATCATCTTTATTTCA
1 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCA
* * * * * * * * * * * * *
23146224 ATTTATAGGCTCAGACCAAGTCATTATTTTTGACCTTC-GCTTAGTTCGATCAGCTTCGTCTCG
1 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACC-TCGGCTCAATCCAATCATCTCCATCTCA
* * * * * * **
23146287 ACTTATAAGCTTAGACCAAGTCATTATTTCTAACCTAGGCTCAGTTCAGTCATCTCCATCTTG
1 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCA
* * *
23146350 ACTTATAGGCTCAAACCAAGTCATCATTTCTAACCTAGGCTCA
1 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCA
23146393 GTTTGGTCAT
Statistics
Matches: 190, Mismatches: 40, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
62 1 0.01
63 187 0.98
64 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.35
Consensus pattern (63 bp):
ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCA
Found at i:23146393 original size:63 final size:63
Alignment explanation
Indices: 23146098--23146436 Score: 272
Period size: 63 Copynumber: 5.4 Consensus size: 63
23146088 ACCATATTTG
* * * * * * *
23146098 ACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCA
1 ACTTATAGGCTCAGACCAAGTCATCATTTCTAACCTAGGCTCAGTTCAGTCATCTTCATCTTA
* * * * * * *
23146161 ACTTATAGGCTTAGACCAAGTCATCATTTTTTACCTCA-ACTCTA-TCCAATCATCTTTAT-TTC
1 ACTTATAGGCTCAGACCAAGTCATCATTTCTAACCT-AGGCTC-AGTTCAGTCATCTTCATCTT-
23146223 A
63 A
* * * * ** * * * **
23146224 ATTTATAGGCTCAGACCAAGTCATTATTTTTGACCTTCGCTTAGTTC-GATCAGCTTCGTCTCG
1 ACTTATAGGCTCAGACCAAGTCATCATTTCTAACCTAGGCTCAGTTCAG-TCATCTTCATCTTA
* * * * *
23146287 ACTTATAAGCTTAGACCAAGTCATTATTTCTAACCTAGGCTCAGTTCAGTCATCTCCATCTTG
1 ACTTATAGGCTCAGACCAAGTCATCATTTCTAACCTAGGCTCAGTTCAGTCATCTTCATCTTA
* ** * *
23146350 ACTTATAGGCTCAAACCAAGTCATCATTTCTAACCTAGGCTCAGTTTGGTCATTTTTATCTTA
1 ACTTATAGGCTCAGACCAAGTCATCATTTCTAACCTAGGCTCAGTTCAGTCATCTTCATCTTA
* * *
23146413 ATTTATAAGCTCAAACCAAGTCAT
1 ACTTATAGGCTCAGACCAAGTCAT
23146437 TTTCATTTTC
Statistics
Matches: 223, Mismatches: 45, Indels: 16
0.79 0.16 0.06
Matches are distributed among these distances:
62 2 0.01
63 218 0.98
64 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (63 bp):
ACTTATAGGCTCAGACCAAGTCATCATTTCTAACCTAGGCTCAGTTCAGTCATCTTCATCTTA
Found at i:23146418 original size:189 final size:189
Alignment explanation
Indices: 23146097--23146437 Score: 454
Period size: 189 Copynumber: 1.8 Consensus size: 189
23146087 TACCATATTT
* *
23146097 GACTTATAGGCTTAGACCAAGTCATCATTTCTAACCTCGGCTCAATCCAATCATCTCCATCTCAA
1 GACTTATAAGCTTAGACCAAGTCATCATTTCTAACCTAGGCTCAATCCAATCATCTCCATCTCAA
* * * *
23146162 CTTATAGGCTTAGACCAAGTCATCATTTTTTACCTCAACTCTATCCAATCATCTTTATTTCAATT
66 CTTATAGGCTCAAACCAAGTCATCATTTCTAACCTCAACTCTATCCAATCATCTTTATTTCAATT
* *
23146227 TATAGGCTCAGACCAAGTCATTATTTTTGACCTTCGCTTAGTTCGATCAGCTTCGTCTC
131 TATAAGCTCAAACCAAGTCATTATTTTTGACCTTCGCTTAGTTCGATCAGCTTCGTCTC
* * * * **
23146286 GACTTATAAGCTTAGACCAAGTCATTATTTCTAACCTAGGCTCAGTTCAGTCATCTCCATCTTGA
1 GACTTATAAGCTTAGACCAAGTCATCATTTCTAACCTAGGCTCAATCCAATCATCTCCATCTCAA
* **** *
23146351 CTTATAGGCTCAAACCAAGTCATCATTTCTAACCT-AGGCTC-AGTTTGGTCATTTTTATCTT-A
66 CTTATAGGCTCAAACCAAGTCATCATTTCTAACCTCA-ACTCTA-TCCAATCATCTTTAT-TTCA
23146413 ATTTATAAGCTCAAACCAAGTCATT
128 ATTTATAAGCTCAAACCAAGTCATT
23146438 TTCATTTTCT
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
188 2 0.02
189 125 0.97
190 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.36
Consensus pattern (189 bp):
GACTTATAAGCTTAGACCAAGTCATCATTTCTAACCTAGGCTCAATCCAATCATCTCCATCTCAA
CTTATAGGCTCAAACCAAGTCATCATTTCTAACCTCAACTCTATCCAATCATCTTTATTTCAATT
TATAAGCTCAAACCAAGTCATTATTTTTGACCTTCGCTTAGTTCGATCAGCTTCGTCTC
Found at i:23151276 original size:23 final size:23
Alignment explanation
Indices: 23151249--23151307 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
23151239 ACCTTTTGAA
**
23151249 AAAAACAAAAAAAGGTAAAAAAGT
1 AAAAA-AAAAAAAGACAAAAAAGT
23151273 AAAAAAAAAAAAGACAAAAAAG-
1 AAAAAAAAAAAAGACAAAAAAGT
* *
23151295 AGAAAAAGAAAAG
1 AAAAAAAAAAAAG
23151308 TTTTGAGTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
22 11 0.35
23 15 0.48
24 5 0.16
ACGTcount: A:0.80, C:0.03, G:0.14, T:0.03
Consensus pattern (23 bp):
AAAAAAAAAAAAGACAAAAAAGT
Found at i:23153770 original size:33 final size:31
Alignment explanation
Indices: 23153622--23153832 Score: 113
Period size: 33 Copynumber: 6.5 Consensus size: 31
23153612 GGTACCATAA
* *
23153622 AAATTTAAGCCCAGTTTAGTTAGCCCCTAATA-
1 AAATTTAAGCCCAGTTTAGCTAGCACC-AA-AG
* * * *
23153654 AAATTTAAGCCCAATTTATCTGGCATCAAA-
1 AAATTTAAGCCCAGTTTAGCTAGCACCAAAG
* * * * * *
23153684 AACTTTTAAACCCAGTTTATCTGGCCCTCAAAAA
1 AA-ATTTAAGCCCAGTTTAGCTAGCAC-C-AAAG
* *
23153718 AAGATTTAAGTCTAGTTTAGCTAGCACTCAAAG
1 AA-ATTTAAGCCCAGTTTAGCTAGCAC-CAAAG
* * * *
23153751 AAATGTTAAGCCCATTTTAGTTGGCTCCAAATG
1 AAAT-TTAAGCCCAGTTTAGCTAGCACCAAA-G
* *
23153784 AAGTTTTAAGCCCAGTTTAACTAGCACCATAA-
1 AA-ATTTAAGCCCAGTTTAGCTAGCACCA-AAG
*
23153816 AAATTTAAGCCTAGTTT
1 AAATTTAAGCCCAGTTT
23153833 TTGTGGCATC
Statistics
Matches: 137, Mismatches: 34, Indels: 17
0.73 0.18 0.09
Matches are distributed among these distances:
30 3 0.02
31 34 0.25
32 30 0.22
33 46 0.34
34 24 0.18
ACGTcount: A:0.36, C:0.20, G:0.13, T:0.31
Consensus pattern (31 bp):
AAATTTAAGCCCAGTTTAGCTAGCACCAAAG
Found at i:23153826 original size:31 final size:30
Alignment explanation
Indices: 23153594--23153832 Score: 127
Period size: 31 Copynumber: 7.5 Consensus size: 30
23153584 TTAAGGAAGT
* ** *
23153594 TTTAAGCCTAGTTTAATTGGTACCATAAAAA
1 TTTAAGCCCAGTTTAGCTGGCACCA-AAAAA
* * *
23153625 TTTAAGCCCAGTTTAGTTAGCCCCTAATAAAA
1 TTTAAGCCCAGTTTAGCTGGCACC-AA-AAAA
* * * *
23153657 TTTAAGCCCAATTTATCTGGCATCAAAAACT
1 TTTAAGCCCAGTTTAGCTGGCACCAAAAA-A
* * *
23153688 TTTAAACCCAGTTTATCTGGCCCTCAAAAAAAGA
1 TTTAAGCCCAGTTTAGCTGGCAC-C--AAAAA-A
* * *
23153722 TTTAAGTCTAGTTTAGCTAGCACTCAAAGAAA
1 TTTAAGCCCAGTTTAGCTGGCAC-CAAA-AAA
* * * *
23153754 TGTTAAGCCCATTTTAGTTGGCTCCAAATGAAGT
1 T-TTAAGCCCAGTTTAGCTGGCACCAAA--AA-A
* *
23153788 TTTAAGCCCAGTTTAACTAGCACCATAAAAA
1 TTTAAGCCCAGTTTAGCTGGCACCA-AAAAA
*
23153819 TTTAAGCCTAGTTT
1 TTTAAGCCCAGTTT
23153833 TTGTGGCATC
Statistics
Matches: 159, Mismatches: 38, Indels: 22
0.73 0.17 0.10
Matches are distributed among these distances:
30 3 0.02
31 54 0.34
32 35 0.22
33 40 0.25
34 27 0.17
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.32
Consensus pattern (30 bp):
TTTAAGCCCAGTTTAGCTGGCACCAAAAAA
Found at i:23153963 original size:61 final size:60
Alignment explanation
Indices: 23153875--23154022 Score: 163
Period size: 60 Copynumber: 2.4 Consensus size: 60
23153865 AGCCCCCAAA
* ** *
23153875 GAAAGTTTTAAGCCTAGTTTACCTGGCACCCATATTTAAGGCC-AATTTATTTGACCCTTAAG
1 GAAA-TTTTAAGCCCAGTTTAGTTGGCACCCA-ATTTAA-GCCTAATTTATTTGACCCCTAAG
* ** * *
23153937 GAAATTTTAAGCCCAGATTAGTTGGCATGCAATTTAAGCCTAATTTATTTGGCCCCTAAT
1 GAAATTTTAAGCCCAGTTTAGTTGGCACCCAATTTAAGCCTAATTTATTTGACCCCTAAG
* *
23153997 GAAATTTTAAACCCTGTTTAGTTGGC
1 GAAATTTTAAGCCCAGTTTAGTTGGC
23154023 TTTCGATGAA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
59 3 0.04
60 45 0.62
61 21 0.29
62 4 0.05
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (60 bp):
GAAATTTTAAGCCCAGTTTAGTTGGCACCCAATTTAAGCCTAATTTATTTGACCCCTAAG
Found at i:23154293 original size:37 final size:37
Alignment explanation
Indices: 23154149--23154329 Score: 134
Period size: 38 Copynumber: 4.9 Consensus size: 37
23154139 TTATCCTAGT
* * * *
23154149 GATTCTTTACTTTTTAACTTACAGTGTTGTCCCTATC
1 GATTCTTTATTTTTTGACTTATAGTGTTGTCCCAATC
* * ** * * * *
23154186 -TTTATTTATAATTCGACTTGT-GATGCTGTCCCAGTC
1 GATTCTTTATTTTTTGACTTATAG-TGTTGTCCCAATC
** * *
23154222 GATTCTTTATTTTTTGACTTACGGTATTATTCCCAATC
1 GATTCTTTATTTTTTGACTTATAGTGTT-GTCCCAATC
23154260 GATTCTTTATTTTTTGACTTATAGTGTTGTCCCAATC
1 GATTCTTTATTTTTTGACTTATAGTGTTGTCCCAATC
* * *
23154297 -AGTTTTTTCATTCTTTAACTTATAGTGTTGTCC
1 GA-TTCTTT-ATTTTTTGACTTATAGTGTTGTCC
23154330 TGTTCAACTT
Statistics
Matches: 108, Mismatches: 30, Indels: 11
0.72 0.20 0.07
Matches are distributed among these distances:
35 1 0.01
36 23 0.21
37 29 0.27
38 55 0.51
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.50
Consensus pattern (37 bp):
GATTCTTTATTTTTTGACTTATAGTGTTGTCCCAATC
Found at i:23155485 original size:19 final size:17
Alignment explanation
Indices: 23155430--23155485 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 17
23155420 CATATGTGAT
* *
23155430 TTTTTGTTTCTTTATTCA
1 TTTTTATTTTTTTATT-A
23155448 TTTTTATTTTTTTAGTTA
1 TTTTTATTTTTTTA-TTA
23155466 TTTTTAATTTTTTTTATTA
1 TTTTT-A-TTTTTTTATTA
23155485 T
1 T
23155486 CCTTATCTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 18 0.55
19 7 0.21
20 8 0.24
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.77
Consensus pattern (17 bp):
TTTTTATTTTTTTATTA
Found at i:23156481 original size:21 final size:21
Alignment explanation
Indices: 23156456--23156535 Score: 70
Period size: 21 Copynumber: 3.7 Consensus size: 21
23156446 TTTATTTGTA
*
23156456 TATTTTCTTTATTAATCTATT
1 TATTTTATTTATTAATCTATT
* *
23156477 TATTTTATTTATTAATTTGTT
1 TATTTTATTTATTAATCTATT
* * *
23156498 TATTTTTTCTTCTTAATTTTATT
1 TATTTTAT-TTATTAA-TCTATT
*
23156521 TATGTTATTTGATTA
1 TATTTTATTT-ATTA
23156536 TTTATGTATT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 25 0.53
22 8 0.17
23 14 0.30
ACGTcount: A:0.23, C:0.05, G:0.04, T:0.69
Consensus pattern (21 bp):
TATTTTATTTATTAATCTATT
Found at i:23156487 original size:4 final size:4
Alignment explanation
Indices: 23156422--23156550 Score: 50
Period size: 4 Copynumber: 32.0 Consensus size: 4
23156412 TGATTTTTTA
* * ** * * * *
23156422 ATTT GTTT ATTT GTTT ATTT -TAA ATTT ATTT GTAT ATTTT CTTT ATTA
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT
* * * * * *
23156470 ATCT ATTT ATTTT ATTT ATTA ATTT GTTT ATTT -TTT -CTT CTTA ATTTT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT
*
23156518 ATTT ATGTT ATTT GA-TT ATTT ATGT ATTT ATTT
1 ATTT AT-TT ATTT -ATTT ATTT ATTT ATTT ATTT
23156551 GTAAATATTT
Statistics
Matches: 88, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
3 7 0.08
4 67 0.76
5 14 0.16
ACGTcount: A:0.22, C:0.03, G:0.05, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:23157813 original size:30 final size:29
Alignment explanation
Indices: 23157755--23157827 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 29
23157745 AGGTTTTCGA
*
23157755 GGTTTAAGGTTTTGACA-TTTAGGGTTTAAAG
1 GGTTT-AGGTTTT-A-ATTTTAAGGTTTAAAG
*
23157786 GGTTTAGAGTTTTAATTTTAAGGTTTAAGG
1 GGTTTAG-GTTTTAATTTTAAGGTTTAAAG
23157816 GGTTTAGGTTTT
1 GGTTTAGGTTTT
23157828 TTTTATTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 6 0.16
30 22 0.58
31 10 0.26
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (29 bp):
GGTTTAGGTTTTAATTTTAAGGTTTAAAG
Found at i:23157940 original size:58 final size:57
Alignment explanation
Indices: 23157876--23158053 Score: 186
Period size: 58 Copynumber: 3.1 Consensus size: 57
23157866 AGGGTTTAGA
* *
23157876 AGGTTTGGAGTTTAGGATTTTGGTTTTAGGATTTTGAGGGTTTAGGGTTTCAATTTT
1 AGGTTTGGAGTTTAGGGTTTTGATTTTAGGATTTTGAGGGTTTAGGGTTTCAATTTT
* * ** **
23157933 TGAGTTT-GAGGTTTAGGGTTTCGATTTTAGGATTTAAAAGGGTTTAGGGTTTTGATTTT
1 AG-GTTTGGA-GTTTAGGGTTTTGATTTTAGGATTT-TGAGGGTTTAGGGTTTCAATTTT
* *
23157992 AGGTTTGGAGTTTGGGGTTTTGATTTTATGG--TTTG-GGGTTTAGGGTTT-AGTTTT
1 AGGTTTGGAGTTTAGGGTTTTGATTTTA-GGATTTTGAGGGTTTAGGGTTTCAATTTT
23158046 AAGGTTTG
1 -AGGTTTG
23158054 AAGGGCCTAG
Statistics
Matches: 100, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
54 4 0.04
55 20 0.20
57 5 0.05
58 47 0.47
59 24 0.24
ACGTcount: A:0.17, C:0.01, G:0.33, T:0.49
Consensus pattern (57 bp):
AGGTTTGGAGTTTAGGGTTTTGATTTTAGGATTTTGAGGGTTTAGGGTTTCAATTTT
Found at i:23158040 original size:21 final size:21
Alignment explanation
Indices: 23158001--23158040 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23157991 TAGGTTTGGA
* *
23158001 GTTTGGGGTTTTGATTTTATG
1 GTTTGGGGTTTAGAGTTTATG
*
23158022 GTTTGGGGTTTAGGGTTTA
1 GTTTGGGGTTTAGAGTTTA
23158041 GTTTTAAGGT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.10, C:0.00, G:0.38, T:0.53
Consensus pattern (21 bp):
GTTTGGGGTTTAGAGTTTATG
Found at i:23158097 original size:29 final size:29
Alignment explanation
Indices: 23158027--23158097 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
23158017 TTATGGTTTG
* *
23158027 GGGTTTAGGGTTTAGTTTTAAGGTTTGAA
1 GGGTTTAAGGTTTAGTTTTAAGGTTTAAA
** *
23158056 GGGCCT-AGAGTTTAGTTTTAGGGTTTAAA
1 GGGTTTAAG-GTTTAGTTTTAAGGTTTAAA
23158085 GGGTTTAAGGTTT
1 GGGTTTAAGGTTT
23158098 CAATTTTGGG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
28 1 0.03
29 30 0.91
30 2 0.06
ACGTcount: A:0.21, C:0.03, G:0.34, T:0.42
Consensus pattern (29 bp):
GGGTTTAAGGTTTAGTTTTAAGGTTTAAA
Found at i:23158524 original size:3 final size:3
Alignment explanation
Indices: 23158516--23158558 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
23158506 GAAATCATTT
* * * *
23158516 TTA TTA TTA TCA TTA TTA TTG TTA TTA TTA ATA ATA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23158559 AAAACAACAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:23160149 original size:37 final size:36
Alignment explanation
Indices: 23160108--23160250 Score: 82
Period size: 37 Copynumber: 3.9 Consensus size: 36
23160098 GGATAACACA
23160108 CAAGTTGAAAAGTAAAAAATATACTGAGACAACACTG
1 CAAGTTGAAAAGTAAAAAATATAC-GAGACAACACTG
* * * *
23160145 CAAG-TCAGAAAGTAAAGAAT-TGACCAGGATAACA-TCG
1 CAAGTTGA-AAAGTAAAAAATAT-ACGA-GACAACACT-G
* *
23160182 CAAGTTGAATA--AAAAAATGAT-CGGGACAACACTG
1 CAAGTTGAAAAGTAAAAAAT-ATACGAGACAACACTG
* ** * *
23160216 CGAGTCAAAAAGTAAAGAATATACTGGGACAACAC
1 CAAGTTGAAAAGTAAAAAATATAC-GAGACAACAC
23160251 CGTAAGCCAA
Statistics
Matches: 79, Mismatches: 15, Indels: 24
0.67 0.13 0.20
Matches are distributed among these distances:
34 14 0.18
35 10 0.13
36 12 0.15
37 41 0.52
38 2 0.03
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.17
Consensus pattern (36 bp):
CAAGTTGAAAAGTAAAAAATATACGAGACAACACTG
Found at i:23160162 original size:74 final size:71
Alignment explanation
Indices: 23160060--23160234 Score: 169
Period size: 74 Copynumber: 2.4 Consensus size: 71
23160050 GAATCAACCA
* * *
23160060 AGACAACA-TGACAAGTCAAATAATAAAGAAAAAGATCGGGATAACA-CACAAGTTGAAAAGTAA
1 AGACAACACTG-CAAGTCAAA-AGTAAAGAAAAAGACCAGGATAACATCACAAGTTGAAAA--AA
23160123 AAAAT-ATACTG
62 AAAATGAT-C-G
** * *
23160134 AGACAACACTGCAAGTCAGAAAGTAAAG-AATTGACCAGGATAACATCGCAAGTTGAATAAAAAA
1 AGACAACACTGCAAGTCA-AAAGTAAAGAAAAAGACCAGGATAACATCACAAGTTGAAAAAAAAA
23160198 ATGATCG
65 ATGATCG
* *
23160205 GGACAACACTGCGAGTCAAAAAGTAAAGAA
1 AGACAACACTGCAAGTC-AAAAGTAAAGAA
23160235 TATACTGGGA
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
71 25 0.29
72 10 0.12
73 15 0.17
74 32 0.37
75 4 0.05
ACGTcount: A:0.51, C:0.14, G:0.19, T:0.15
Consensus pattern (71 bp):
AGACAACACTGCAAGTCAAAAGTAAAGAAAAAGACCAGGATAACATCACAAGTTGAAAAAAAAAA
TGATCG
Found at i:23160290 original size:22 final size:22
Alignment explanation
Indices: 23160262--23160310 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
23160252 GTAAGCCAAA
*
23160262 ATTATGCTTAAAGGTCTTAGAG
1 ATTATGCCTAAAGGTCTTAGAG
*
23160284 ATTATGCCTAGAGGTCTTAGAG
1 ATTATGCCTAAAGGTCTTAGAG
23160306 ATTAT
1 ATTAT
23160311 ATCTGGAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.31, C:0.10, G:0.22, T:0.37
Consensus pattern (22 bp):
ATTATGCCTAAAGGTCTTAGAG
Found at i:23160319 original size:22 final size:22
Alignment explanation
Indices: 23160273--23160335 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
23160263 TTATGCTTAA
*
23160273 AGGTCTTAGAGATTATGCCTAG
1 AGGTCTTAGAGATTATACCTAG
* *
23160295 AGGTCTTAGAGATTATATCTGG
1 AGGTCTTAGAGATTATACCTAG
* * *
23160317 AGGTTTTAAAAATTATACC
1 AGGTCTTAGAGATTATACC
23160336 CGGAGATCTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (22 bp):
AGGTCTTAGAGATTATACCTAG
Found at i:23160510 original size:119 final size:119
Alignment explanation
Indices: 23160313--23160551 Score: 300
Period size: 119 Copynumber: 2.0 Consensus size: 119
23160303 GAGATTATAT
* * *
23160313 CTGGAGGTTTTAAAAATTATACCCGGAGATCTTGAAAATTGTAAAATTTTTGAATGCTCCTCTCA
1 CTGGAGGTCTTAAAAATTATACCCGGAGATCTTGAAAATTGCAAAATCTTTGAATGCTCCTCTCA
** ** *
23160378 ATCAGTGGCAATGAAACTTTAAAATATTTTGTTCAGAGGTCCTGAAAATTGTGC
66 ATCAAAGGCAATGAAACTTTAAAATATTTTACTCAGAGGTCCTGAAAATTATGC
* * * * **
23160432 CTGGAGGTCTTAGAGATTATGCCCGGA-AGTCTTGAAAATTGCAAAATCTTTGAATTCTTTTCTC
1 CTGGAGGTCTTAAAAATTATACCCGGAGA-TCTTGAAAATTGCAAAATCTTTGAATGCTCCTCTC
* * * *
23160496 AATCAAAGGTAATGAAACTTTAAAATGTTTTACTCGGAGGTCTTGAAAATTATGC
65 AATCAAAGGCAATGAAACTTTAAAATATTTTACTCAGAGGTCCTGAAAATTATGC
23160551 C
1 C
23160552 CAGAGATTTT
Statistics
Matches: 101, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
118 1 0.01
119 100 0.99
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34
Consensus pattern (119 bp):
CTGGAGGTCTTAAAAATTATACCCGGAGATCTTGAAAATTGCAAAATCTTTGAATGCTCCTCTCA
ATCAAAGGCAATGAAACTTTAAAATATTTTACTCAGAGGTCCTGAAAATTATGC
Found at i:23160659 original size:105 final size:104
Alignment explanation
Indices: 23160514--23160730 Score: 308
Period size: 105 Copynumber: 2.1 Consensus size: 104
23160504 GTAATGAAAC
* * *
23160514 TTTAAAATGTTTTACTCGGAGGTCTTGAAAATTATGCCCAGAGATTTTAGAGCTTTTAAAATCTT
1 TTTAAAATGTTTTACTCAGAGGTCTTGAAAATTATGCCCAGAGATCTTAGAGATTTTAAAATCTT
* *
23160579 TGAATGCTCTTATAATCAGAGACCATAAAACTTTTAAAA
66 TGAATGCTCCTATAATCAGAGACCATAAAACTTTAAAAA
* * * * *
23160618 TTTAAAATATTTTTGCTCAGAGGTCTTGGAAATTGTGCCCAGAGGTCTTAGAGATTTTAAAATCT
1 TTTAAAAT-GTTTTACTCAGAGGTCTTGAAAATTATGCCCAGAGATCTTAGAGATTTTAAAATCT
* * *
23160683 TTGAATGCTCCTCTAATCAGAGGCCATGAAACTTTAAAAA
65 TTGAATGCTCCTATAATCAGAGACCATAAAACTTTAAAAA
23160723 TTTAAAAT
1 TTTAAAAT
23160731 TATGCCCAAA
Statistics
Matches: 99, Mismatches: 13, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
104 8 0.08
105 91 0.92
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36
Consensus pattern (104 bp):
TTTAAAATGTTTTACTCAGAGGTCTTGAAAATTATGCCCAGAGATCTTAGAGATTTTAAAATCTT
TGAATGCTCCTATAATCAGAGACCATAAAACTTTAAAAA
Found at i:23160780 original size:80 final size:80
Alignment explanation
Indices: 23160647--23160826 Score: 297
Period size: 80 Copynumber: 2.2 Consensus size: 80
23160637 GAGGTCTTGG
* * * *
23160647 AAATTGTGCCCAGAGGTCTTAGAGATTTTAAAATCTTTGAATGCTCCTCTAATCAGAGGCCATGA
1 AAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGCTCCCCTAATCAGAGGCCATGA
23160712 AACTTTAAAAATTTA
66 AACTTTAAAAATTTA
*
23160727 AAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGTTCCCCTAATCAGAGGCCATGA
1 AAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGCTCCCCTAATCAGAGGCCATGA
*
23160792 AACTTTGAAAATTTA
66 AACTTTAAAAATTTA
*
23160807 AAATAATGCCCAAAGGTCTT
1 AAATTATGCCCAAAGGTCTT
23160827 GAAAATTATG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
80 93 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (80 bp):
AAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGCTCCCCTAATCAGAGGCCATGA
AACTTTAAAAATTTA
Found at i:23160911 original size:184 final size:183
Alignment explanation
Indices: 23160541--23160931 Score: 505
Period size: 184 Copynumber: 2.1 Consensus size: 183
23160531 GGAGGTCTTG
* * * * * **
23160541 AAAATTATGCCCAGAGATTTTAGAGCTTTTAAAATCTTTGAATGCTCTTATAATCAGAGACCATA
1 AAAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGCTCCCATAATCAGAGACCATA
* * * * * * *
23160606 AAACTTTTAAAATTTAAAATATTTTTGCTCAGAGGTCTTGGAAATTGTGCCCAGAGGTCTTAGAG
66 AAACTTTGAAAATTTAAAATA--TATGCCCAAAGGTCTTGAAAATTATGCCCAGAGGTCTTAGAA
*
23160671 ATTTTAAAATCTTTGAATGCTCCTCTAATCAGAGGCCATGAAACTTTAAAAATTT
129 ATTTTAAAATCTTTGAATGCTCCTCTAATCAAAGGCCATGAAACTTTAAAAATTT
* * * *
23160726 AAAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGTTCCCCTAATCAGAGGCCATG
1 AAAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGCTCCCATAATCAGAGACCATA
****
23160791 AAACTTTGAAAATTTAAAATA-ATGCCCAAAGGTCTTGAAAATTATGTTTGGAGGTCTTAGAAAA
66 AAACTTTGAAAATTTAAAATATATGCCCAAAGGTCTTGAAAATTATGCCCAGAGGTCTTAG--AA
23160855 ATTTTAAAATCTTTGAATGCTCCTCTAATCAAAGGCCATGAAACTTTAAAAATTT
129 ATTTTAAAATCTTTGAATGCTCCTCTAATCAAAGGCCATGAAACTTTAAAAATTT
* * *
23160910 AAAATTGTGCTCTAAGGTCTTA
1 AAAATTATGCCCAAAGGTCTTA
23160932 AAAATTATGC
Statistics
Matches: 178, Mismatches: 26, Indels: 5
0.85 0.12 0.02
Matches are distributed among these distances:
182 30 0.17
184 74 0.42
185 74 0.42
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34
Consensus pattern (183 bp):
AAAATTATGCCCAAAGGTCTTAGAGATTTCAAAATCTTTGAATGCTCCCATAATCAGAGACCATA
AAACTTTGAAAATTTAAAATATATGCCCAAAGGTCTTGAAAATTATGCCCAGAGGTCTTAGAAAT
TTTAAAATCTTTGAATGCTCCTCTAATCAAAGGCCATGAAACTTTAAAAATTT
Found at i:23160934 original size:21 final size:21
Alignment explanation
Indices: 23160908--23160984 Score: 64
Period size: 22 Copynumber: 3.5 Consensus size: 21
23160898 CTTTAAAAAT
* * *
23160908 TTAAAATTGTGCTCTAAGGTC
1 TTAAAATTATGCCCAAAGGTC
23160929 TTAAAAATTATGCCCAAAGGTC
1 TT-AAAATTATGCCCAAAGGTC
* * *
23160951 TTAGAGATTATACCTAAAGGTC
1 TTA-AAATTATGCCCAAAGGTC
*
23160973 TTAGAAGTTATG
1 TTA-AAATTATG
23160985 TCTAGAGGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
21 3 0.07
22 42 0.93
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (21 bp):
TTAAAATTATGCCCAAAGGTC
Found at i:23160950 original size:104 final size:103
Alignment explanation
Indices: 23160726--23160955 Score: 300
Period size: 104 Copynumber: 2.2 Consensus size: 103
23160716 TTAAAAATTT
* * *
23160726 AAAATTATGCCCAAAGGTCTTAG-AGATTTCAAAATCTTTGAATGTTCCCCTAATCAGAGGCCAT
1 AAAATTATGCCCAAAGGTCTTAGAAAATTTCAAAATCTTTGAATGCTCCCCTAATCAAAGGCCAT
* *
23160790 GAAACTTTGAAAATTTAAAATAATGCCCAAAGGTCTTG
66 GAAACTTTAAAAATTTAAAATAATGCCCAAAGGTCTTA
***** * *
23160828 AAAATTATGTTTGGAGGTCTTAGAAAAATTTTAAAATCTTTGAATGCTCCTCTAATCAAAGGCCA
1 AAAATTATGCCCAAAGGTCTTAG-AAAATTTCAAAATCTTTGAATGCTCCCCTAATCAAAGGCCA
** * *
23160893 TGAAACTTTAAAAATTTAAAATTGTGCTCTAAGGTCTTA
65 TGAAACTTTAAAAATTTAAAATAATGCCCAAAGGTCTTA
23160932 AAAATTATGCCCAAAGGTCTTAGA
1 AAAATTATGCCCAAAGGTCTTAGA
23160956 GATTATACCT
Statistics
Matches: 105, Mismatches: 21, Indels: 3
0.81 0.16 0.02
Matches are distributed among these distances:
102 18 0.17
103 1 0.01
104 86 0.82
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (103 bp):
AAAATTATGCCCAAAGGTCTTAGAAAATTTCAAAATCTTTGAATGCTCCCCTAATCAAAGGCCAT
GAAACTTTAAAAATTTAAAATAATGCCCAAAGGTCTTA
Found at i:23160993 original size:22 final size:22
Alignment explanation
Indices: 23160923--23160997 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 22
23160913 ATTGTGCTCT
* * *
23160923 AAGGTCTTAAAAATTATGCCCA
1 AAGGTCTTAGAAGTTATGCCTA
*
23160945 AAGGTCTTAG-AGATTATACCTA
1 AAGGTCTTAGAAG-TTATGCCTA
*
23160967 AAGGTCTTAGAAGTTATGTCTA
1 AAGGTCTTAGAAGTTATGCCTA
*
23160989 GAGGTCTTA
1 AAGGTCTTA
23160998 TAGATTTCAA
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 1 0.02
22 41 0.93
23 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (22 bp):
AAGGTCTTAGAAGTTATGCCTA
Found at i:23161701 original size:41 final size:40
Alignment explanation
Indices: 23161596--23161735 Score: 133
Period size: 41 Copynumber: 3.5 Consensus size: 40
23161586 TTTTATGGTC
* * * *
23161596 CAAATGCAAATGTCTTATGCAAG-TGCAAATGTAAGTGATG
1 CAAATACAAATGTCTT-TTCATGATGCAAATGCAAGTGATG
* *
23161636 CAAATACGAATGT-TTTTCTTATGATGAAAATGCAAGTGATG
1 CAAATACAAATGTCTTTTC--ATGATGCAAATGCAAGTGATG
* *
23161677 CAAATGCAAATGTCCTTTTCATGATGCATA-GACAAGTGATG
1 CAAATACAAATGT-CTTTTCATGATGCAAATG-CAAGTGATG
*
23161718 CAATTACAAATGTCTTTT
1 CAAATACAAATGTCTTTT
23161736 TTTTTTGTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 12
0.77 0.11 0.11
Matches are distributed among these distances:
38 2 0.02
39 2 0.02
40 19 0.23
41 54 0.66
43 5 0.06
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (40 bp):
CAAATACAAATGTCTTTTCATGATGCAAATGCAAGTGATG
Found at i:23163177 original size:13 final size:12
Alignment explanation
Indices: 23163161--23163205 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
23163151 TTTTATGGTT
23163161 TTTTTTTTCTTC
1 TTTTTTTTCTTC
*
23163173 ATTTTTTTGCTT-
1 -TTTTTTTTCTTC
23163185 TTTTTTTTCTCTC
1 TTTTTTTTCT-TC
23163198 TTTTTTTT
1 TTTTTTTT
23163206 TTTATGCCCC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 9 0.32
12 1 0.04
13 18 0.64
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.82
Consensus pattern (12 bp):
TTTTTTTTCTTC
Found at i:23163186 original size:24 final size:25
Alignment explanation
Indices: 23163159--23163205 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
23163149 TCTTTTATGG
23163159 TTTTTTTTTTCT-TCATTTTTTTGC
1 TTTTTTTTTTCTCTCATTTTTTTGC
*
23163183 TTTTTTTTTTCTCTCTTTTTTTT
1 TTTTTTTTTTCTCTCATTTTTTT
23163206 TTTATGCCCC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 12 0.57
25 9 0.43
ACGTcount: A:0.02, C:0.13, G:0.02, T:0.83
Consensus pattern (25 bp):
TTTTTTTTTTCTCTCATTTTTTTGC
Done.