Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 121 of 133
Found at i:23170039 original size:28 final size:28
Alignment explanation
Indices: 23170008--23170258 Score: 134
Period size: 30 Copynumber: 8.6 Consensus size: 28
23169998 GGGTTTAGAA
* **
23170008 GTTTGGGGTTAAGGGTTTTGGTTTTAAG
1 GTTTGGGGTTTAGGGTTTTAATTTTAAG
*
23170036 GTTTGGAGGGTTTAGGGTTTCAATTTTCAA-
1 GTTT-G-GGGTTTAGGGTTTTAATTTT-AAG
* * * *
23170066 GTTTGAGGTTTAGGGCTTTGATTTTAGG
1 GTTTGGGGTTTAGGGTTTTAATTTTAAG
**
23170094 GTTTAAAAGGTTTAGGGTTTTAATTTTAAG
1 GTTT--GGGGTTTAGGGTTTTAATTTTAAG
* * *
23170124 ATTTGGAGTTT-GGGATTTTCATTTTAAG
1 GTTTGGGGTTTAGGG-TTTTAATTTTAAG
* *
23170152 GTTTGGGGTTTAGGG-CTTAGTTTT-AG
1 GTTTGGGGTTTAGGGTTTTAATTTTAAG
* ** *
23170178 GATTTGGAAGGCTTA-GACTTTAGTTTTAAG
1 G-TTTGG--GGTTTAGGGTTTTAATTTTAAG
* * *
23170208 GTTTAGAGGGTTTAAGGTTTCAATTTTTTAG
1 GTTT-G-GGGTTTAGGGTTTTAA-TTTTAAG
*
23170239 GTTTAGAGGATTTAGGGTTT
1 GTTT-G-GGGTTTAGGGTTT
23170259 AGTTTTTTTT
Statistics
Matches: 172, Mismatches: 34, Indels: 31
0.73 0.14 0.13
Matches are distributed among these distances:
26 3 0.02
27 15 0.09
28 50 0.29
29 26 0.15
30 51 0.30
31 27 0.16
ACGTcount: A:0.20, C:0.03, G:0.31, T:0.46
Consensus pattern (28 bp):
GTTTGGGGTTTAGGGTTTTAATTTTAAG
Found at i:23170054 original size:37 final size:37
Alignment explanation
Indices: 23169972--23170054 Score: 87
Period size: 37 Copynumber: 2.2 Consensus size: 37
23169962 TAGGTTTTTT
* *
23169972 TTTAAGGTTTAGGGTTTTGATATTAAGGGTTTAGAAG
1 TTTAGGGTTAAGGGTTTTGATATTAAGGGTTTAGAAG
* * * * *
23170009 TTTGGGGTTAAGGGTTTTGGTTTTAA-GGTTTGGAGGG
1 TTTAGGGTTAAGGGTTTTGATATTAAGGGTTTAGA-AG
23170046 TTTAGGGTT
1 TTTAGGGTT
23170055 TCAATTTTCA
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
36 7 0.19
37 30 0.81
ACGTcount: A:0.19, C:0.00, G:0.36, T:0.45
Consensus pattern (37 bp):
TTTAGGGTTAAGGGTTTTGATATTAAGGGTTTAGAAG
Found at i:23170068 original size:58 final size:57
Alignment explanation
Indices: 23170009--23170234 Score: 185
Period size: 58 Copynumber: 3.9 Consensus size: 57
23169999 GGTTTAGAAG
* * *
23170009 TTTGGGGTTAAGGGTTTTGGTTTTAAGGTTTGGAGGGTTTAGGGTTTCAATTTTCAAG-
1 TTTGGGGTT-AGGGCTTTGATTTTAAGGTTTAGAGGGTTTAGGGTTTCAATTTT-AAGA
* * * * *
23170067 TTTGAGGTTTAGGGCTTTGATTTTAGGGTTTAAAAGGTTTAGGGTTTTAATTTTAAGA
1 TTTG-GGGTTAGGGCTTTGATTTTAAGGTTTAGAGGGTTTAGGGTTTCAATTTTAAGA
* * * * * * *
23170125 TTTGGAGTTTGGGATTTTCATTTTAAGGTTT-G-GGGTTTAGGGCTT-AGTTTTAGGA
1 TTTGGGGTTAGGG-CTTTGATTTTAAGGTTTAGAGGGTTTAGGGTTTCAATTTTAAGA
* *
23170180 TTTGGAAGGCTTA-GACTTT-AGTTTTAAGGTTTAGAGGGTTTAAGGTTTCAATTTT
1 TTTGG--GG-TTAGGGCTTTGA-TTTTAAGGTTTAGAGGGTTTAGGGTTTCAATTTT
23170235 TTAGGTTTAG
Statistics
Matches: 132, Mismatches: 26, Indels: 19
0.75 0.15 0.11
Matches are distributed among these distances:
55 14 0.11
56 25 0.19
57 12 0.09
58 72 0.55
59 9 0.07
ACGTcount: A:0.20, C:0.04, G:0.30, T:0.46
Consensus pattern (57 bp):
TTTGGGGTTAGGGCTTTGATTTTAAGGTTTAGAGGGTTTAGGGTTTCAATTTTAAGA
Found at i:23170267 original size:31 final size:31
Alignment explanation
Indices: 23170201--23170266 Score: 89
Period size: 31 Copynumber: 2.2 Consensus size: 31
23170191 TAGACTTTAG
* *
23170201 TTTTAAGGTTTAGAGGGTTTAAGGTTTCAAT
1 TTTTTAGGTTTAGAGGATTTAAGGTTTCAAT
* *
23170232 TTTTTAGGTTTAGAGGATTTAGGGTTT-AGT
1 TTTTTAGGTTTAGAGGATTTAAGGTTTCAAT
23170262 TTTTT
1 TTTTT
23170267 TTTTTAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 7 0.23
31 24 0.77
ACGTcount: A:0.21, C:0.02, G:0.26, T:0.52
Consensus pattern (31 bp):
TTTTTAGGTTTAGAGGATTTAAGGTTTCAAT
Found at i:23170561 original size:19 final size:18
Alignment explanation
Indices: 23170538--23170581 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 18
23170528 TACTAGTTTG
23170538 TTTTATAATTAATTTTAT
1 TTTTATAATTAATTTTAT
* *
23170556 TATTTATTATTTATTTTTAT
1 T-TTTA-TAATTAATTTTAT
23170576 TTTTAT
1 TTTTAT
23170582 TTAACACTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 8 0.36
20 12 0.55
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTTATAATTAATTTTAT
Found at i:23170576 original size:6 final size:6
Alignment explanation
Indices: 23170550--23170583 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
23170540 TTATAATTAA
23170550 TTTTAT TATTTAT TATTTAT TTTTAT TTTTAT TT
1 TTTTAT T-TTTAT T-TTTAT TTTTAT TTTTAT TT
23170584 AACACTTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:23171760 original size:15 final size:15
Alignment explanation
Indices: 23171728--23171776 Score: 57
Period size: 14 Copynumber: 3.3 Consensus size: 15
23171718 ATTAAACCAA
* *
23171728 TATTAATATTTTAT-
1 TATTAATTTTTTTTC
23171742 TATTAATTTTTTTTC
1 TATTAATTTTTTTTC
23171757 TATT-ATTATTTTTTC
1 TATTAATT-TTTTTTC
23171772 TATTA
1 TATTA
23171777 TAATTATTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 15 0.50
15 15 0.50
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (15 bp):
TATTAATTTTTTTTC
Found at i:23171777 original size:15 final size:15
Alignment explanation
Indices: 23171728--23171777 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
23171718 ATTAAACCAA
* *
23171728 TATTAATATTTTAT-
1 TATTATTATTTTTTC
23171742 TATTAATT-TTTTTTC
1 TATT-ATTATTTTTTC
23171757 TATTATTATTTTTTC
1 TATTATTATTTTTTC
23171772 TATTAT
1 TATTAT
23171778 AATTATTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 12 0.39
15 19 0.61
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (15 bp):
TATTATTATTTTTTC
Found at i:23171782 original size:18 final size:18
Alignment explanation
Indices: 23171739--23171784 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 18
23171729 ATTAATATTT
23171739 TATTATTAATT-TTTTTTC
1 TATTA-TAATTATTTTTTC
23171757 TA-T-T-ATTATTTTTTC
1 TATTATAATTATTTTTTC
23171772 TATTATAATTATT
1 TATTATAATTATT
23171785 AATGATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
14 3 0.12
15 10 0.42
16 1 0.04
17 2 0.08
18 8 0.33
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (18 bp):
TATTATAATTATTTTTTC
Found at i:23177136 original size:2 final size:2
Alignment explanation
Indices: 23177129--23177156 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23177119 AATTGTAAGA
23177129 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23177157 GTGAGACAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23189919 original size:22 final size:22
Alignment explanation
Indices: 23189894--23189942 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
23189884 TGAGTATACG
*
23189894 TGTGTATCTGATTCTGTATGTA
1 TGTGTATCTGATTATGTATGTA
* * *
23189916 TGTGTATGTGGTTATTTATGTA
1 TGTGTATCTGATTATGTATGTA
23189938 TGTGT
1 TGTGT
23189943 GCATGTATGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.16, C:0.04, G:0.27, T:0.53
Consensus pattern (22 bp):
TGTGTATCTGATTATGTATGTA
Found at i:23190002 original size:2 final size:2
Alignment explanation
Indices: 23189997--23190022 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23189987 ATACCCATTA
23189997 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
23190023 TCGTACTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23191054 original size:2 final size:2
Alignment explanation
Indices: 23191047--23191075 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23191037 AGGTTAGAGA
23191047 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
23191076 ATGACTACAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:23193612 original size:15 final size:15
Alignment explanation
Indices: 23193592--23193625 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
23193582 ATTTCTTATA
*
23193592 TTTACTTCATGGTAC
1 TTTACTACATGGTAC
23193607 TTTACTACATGGTAC
1 TTTACTACATGGTAC
23193622 TTTA
1 TTTA
23193626 GGTTCCTGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.47
Consensus pattern (15 bp):
TTTACTACATGGTAC
Found at i:23194539 original size:18 final size:17
Alignment explanation
Indices: 23194507--23194542 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
23194497 TAATTTTTAG
*
23194507 ATTTTTATATTATATTT
1 ATTTTCATATTATATTT
23194524 ATTTTCATACTTATATTT
1 ATTTTCATA-TTATATTT
23194542 A
1 A
23194543 AAGAATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTCATATTATATTT
Found at i:23194916 original size:20 final size:21
Alignment explanation
Indices: 23194878--23194916 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
23194868 ATTTAAATTT
* *
23194878 ATATATATTTTTATTTTCACA
1 ATATATATTTTCATCTTCACA
23194899 ATATA-ATTTTCATCTTCA
1 ATATATATTTTCATCTTCA
23194917 TCTTTATTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.33, C:0.13, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATATATTTTCATCTTCACA
Found at i:23194975 original size:30 final size:30
Alignment explanation
Indices: 23194913--23194973 Score: 88
Period size: 30 Copynumber: 2.1 Consensus size: 30
23194903 AATTTTCATC
**
23194913 TTCATCTTTATTTGAGTAAAAGTTTTCATT
1 TTCATCTTTATTTGAGTAAAAGTTTGAATT
*
23194943 TTCATTTTTATTTGAGTAAAAG-TTGAATT
1 TTCATCTTTATTTGAGTAAAAGTTTGAATT
23194972 TT
1 TT
23194974 TCGTTGAGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 7 0.25
30 21 0.75
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (30 bp):
TTCATCTTTATTTGAGTAAAAGTTTGAATT
Found at i:23194975 original size:36 final size:30
Alignment explanation
Indices: 23194905--23194966 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
23194895 CACAATATAA
23194905 TTTTCATCTTCATCTTTATTTGAGTAAAAG
1 TTTTCATCTTCATCTTTATTTGAGTAAAAG
* *
23194935 TTTTCATTTTCATTTTTATTTGAGTAAAAG
1 TTTTCATCTTCATCTTTATTTGAGTAAAAG
23194965 TT
1 TT
23194967 GAATTTTTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.55
Consensus pattern (30 bp):
TTTTCATCTTCATCTTTATTTGAGTAAAAG
Found at i:23195436 original size:17 final size:18
Alignment explanation
Indices: 23195414--23195447 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23195404 TGTTTGATAC
*
23195414 ATAAGATTATA-AATATA
1 ATAAGATAATATAATATA
23195431 ATAAGATAATATAATAT
1 ATAAGATAATATAATAT
23195448 TATGAATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
ATAAGATAATATAATATA
Found at i:23200486 original size:9 final size:9
Alignment explanation
Indices: 23200472--23200496 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23200462 AAGGGATAAA
23200472 GGAAAAAAG
1 GGAAAAAAG
23200481 GGAAAAAAG
1 GGAAAAAAG
23200490 GGAAAAA
1 GGAAAAA
23200497 GCACTACTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (9 bp):
GGAAAAAAG
Found at i:23207510 original size:11 final size:11
Alignment explanation
Indices: 23207496--23207551 Score: 58
Period size: 13 Copynumber: 4.7 Consensus size: 11
23207486 AAATTTTAAA
23207496 TTATATTATTT
1 TTATATTATTT
*
23207507 TTATACTTTTTAT
1 TTATA-TTATT-T
23207520 TTATATTATTT
1 TTATATTATTT
*
23207531 TTATATCATATTA
1 TTATAT--TATTT
23207544 TTATATTA
1 TTATATTA
23207552 AATTTTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
11 14 0.37
12 8 0.21
13 16 0.42
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (11 bp):
TTATATTATTT
Found at i:23207516 original size:24 final size:24
Alignment explanation
Indices: 23207489--23207535 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
23207479 TTTTTCAAAA
23207489 TTTTAAATTATATTATTTTTATAC
1 TTTTAAATTATATTATTTTTATAC
* *
23207513 TTTTTATTTATATTATTTTTATA
1 TTTTAAATTATATTATTTTTATA
23207536 TCATATTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (24 bp):
TTTTAAATTATATTATTTTTATAC
Found at i:23207547 original size:24 final size:23
Alignment explanation
Indices: 23207495--23207551 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 23
23207485 AAAATTTTAA
* *
23207495 ATTATATTATTTTTATACTTTTT
1 ATTATATTATTTTTATACATATT
23207518 ATTTATATTATTTTTATATCATATT
1 A-TTATATTATTTTTATA-CATATT
23207543 ATTATATTA
1 ATTATATTA
23207552 AATTTTAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 1 0.03
24 24 0.80
25 5 0.17
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (23 bp):
ATTATATTATTTTTATACATATT
Found at i:23207645 original size:23 final size:24
Alignment explanation
Indices: 23207601--23207646 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
23207591 ATGATACGAT
*
23207601 AAAAATTTTTTTATTATATAATTC
1 AAAAATTTTTTTATCATATAATTC
23207625 AAAAATTTTTTTATCAT-TAATT
1 AAAAATTTTTTTATCATATAATT
23207647 TAATTGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (24 bp):
AAAAATTTTTTTATCATATAATTC
Found at i:23207753 original size:23 final size:23
Alignment explanation
Indices: 23207725--23207777 Score: 90
Period size: 23 Copynumber: 2.3 Consensus size: 23
23207715 ATCATTAAAA
23207725 AATTTTAA-TTTACATAAATCTCC
1 AATTTTAATTTTA-ATAAATCTCC
23207748 AATTTTAATTTTAATAAATCTCC
1 AATTTTAATTTTAATAAATCTCC
23207771 AATTTTA
1 AATTTTA
23207778 TTAGAATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 25 0.86
24 4 0.14
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (23 bp):
AATTTTAATTTTAATAAATCTCC
Found at i:23218326 original size:16 final size:16
Alignment explanation
Indices: 23218302--23218338 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
23218292 ATCACAAATT
*
23218302 ATCACAAATCATCATC
1 ATCATAAATCATCATC
*
23218318 ATCATAAATCATCATT
1 ATCATAAATCATCATC
23218334 ATCAT
1 ATCAT
23218339 TGGTTTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.32
Consensus pattern (16 bp):
ATCATAAATCATCATC
Found at i:23236035 original size:72 final size:72
Alignment explanation
Indices: 23235958--23236108 Score: 176
Period size: 72 Copynumber: 2.1 Consensus size: 72
23235948 ATACCGGAGG
* * * * ** * * * *
23235958 AAATTGGGAACTTGAAAGCATTGACTTTGTTGAACTTGTCTCGAAACCAGTTGAGTGGATTCATT
1 AAATTGGAAAATTGAAAGCACTGACATCATTGAACCTCTCACGAAACCAGTTGAGTGGATCCATT
23236023 CCGCCCC
66 CCGCCCC
* * * *
23236030 AAATTGGAAAATTGCATGCACTGACATCATTGGACCTCTCAGGAAACCAGTTGAGTGGATCCATT
1 AAATTGGAAAATTGAAAGCACTGACATCATTGAACCTCTCACGAAACCAGTTGAGTGGATCCATT
23236095 CCGCCCC
66 CCGCCCC
23236102 AAATTGG
1 AAATTGG
23236109 TAATTGCCTG
Statistics
Matches: 65, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (72 bp):
AAATTGGAAAATTGAAAGCACTGACATCATTGAACCTCTCACGAAACCAGTTGAGTGGATCCATT
CCGCCCC
Found at i:23253334 original size:3 final size:3
Alignment explanation
Indices: 23253326--23253360 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
23253316 GTAATCAGAG
23253326 TAT TAT TAT TATT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T
23253361 GGGGGAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:23258656 original size:24 final size:25
Alignment explanation
Indices: 23258619--23258670 Score: 97
Period size: 24 Copynumber: 2.1 Consensus size: 25
23258609 TTCGTGAATT
23258619 TTTTTTTTTGGTTTATATAGTATAA
1 TTTTTTTTTGGTTTATATAGTATAA
23258644 TTTTTTTTT-GTTTATATAGTATAA
1 TTTTTTTTTGGTTTATATAGTATAA
23258668 TTT
1 TTT
23258671 CATAGTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (25 bp):
TTTTTTTTTGGTTTATATAGTATAA
Found at i:23267062 original size:16 final size:16
Alignment explanation
Indices: 23267041--23267072 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
23267031 TTTCGTTTAA
23267041 GCATTAAGGACGAATC
1 GCATTAAGGACGAATC
23267057 GCATTAAGGACGAATC
1 GCATTAAGGACGAATC
23267073 ATTATTCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.19
Consensus pattern (16 bp):
GCATTAAGGACGAATC
Found at i:23277371 original size:22 final size:22
Alignment explanation
Indices: 23277346--23277387 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
23277336 TTAAATTTAA
*
23277346 ATTTCATTATATATGAATTTTC
1 ATTTAATTATATATGAATTTTC
* *
23277368 ATTTAATTTTATATTAATTT
1 ATTTAATTATATATGAATTT
23277388 GTTAATTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (22 bp):
ATTTAATTATATATGAATTTTC
Found at i:23277403 original size:17 final size:19
Alignment explanation
Indices: 23277370--23277405 Score: 58
Period size: 17 Copynumber: 2.0 Consensus size: 19
23277360 GAATTTTCAT
23277370 TTAATTTTATATTAATTTG
1 TTAATTTTATATTAATTTG
23277389 TTAA-TTTAT-TTAATTTG
1 TTAATTTTATATTAATTTG
23277406 CTTATCGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 5 0.29
19 4 0.24
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.64
Consensus pattern (19 bp):
TTAATTTTATATTAATTTG
Found at i:23281733 original size:2 final size:2
Alignment explanation
Indices: 23281726--23281755 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
23281716 AATCCTTACT
23281726 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23281756 CATTTCCAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23282601 original size:6 final size:6
Alignment explanation
Indices: 23282592--23282619 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23282582 ATCTACTTAT
23282592 AATATA AATATA AATATA AATATA AATA
1 AATATA AATATA AATATA AATATA AATA
23282620 AATCATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AATATA
Found at i:23285909 original size:48 final size:48
Alignment explanation
Indices: 23285853--23285945 Score: 168
Period size: 48 Copynumber: 1.9 Consensus size: 48
23285843 TCTTAGCCTT
* *
23285853 ATTATGTGGGGGATATATATGATAATTCACAAGCCCTCAATAGTTCTC
1 ATTATGTGGGGGATATATATGATAATGCACAAGCCCCCAATAGTTCTC
23285901 ATTATGTGGGGGATATATATGATAATGCACAAGCCCCCAATAGTT
1 ATTATGTGGGGGATATATATGATAATGCACAAGCCCCCAATAGTT
23285946 TACTTTGTCG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.31
Consensus pattern (48 bp):
ATTATGTGGGGGATATATATGATAATGCACAAGCCCCCAATAGTTCTC
Found at i:23286572 original size:6 final size:6
Alignment explanation
Indices: 23286561--23286593 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
23286551 GATTTAACTA
23286561 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATG
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATG
23286594 AGCATTTGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.48
Consensus pattern (6 bp):
ATGTAT
Found at i:23289031 original size:2 final size:2
Alignment explanation
Indices: 23289024--23289057 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
23289014 ATTCTCAATT
23289024 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
23289058 TATATATATA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:23289062 original size:2 final size:2
Alignment explanation
Indices: 23289057--23289089 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
23289047 ACACACACAC
23289057 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23289090 ATGATCCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23291184 original size:19 final size:19
Alignment explanation
Indices: 23291160--23291224 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
23291150 TCGGGGTTTC
*
23291160 ACATAGTGTTTAGGATTTT
1 ACATAGGGTTTAGGATTTT
*
23291179 ACATAGGGTTTAAGATTTT
1 ACATAGGGTTTAGGATTTT
* * *
23291198 ACCTAGGGTTTCGAATTTT
1 ACATAGGGTTTAGGATTTT
*
23291217 ACCTAGGG
1 ACATAGGG
23291225 CTTTTAGGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (19 bp):
ACATAGGGTTTAGGATTTT
Found at i:23294025 original size:132 final size:134
Alignment explanation
Indices: 23293739--23294070 Score: 378
Period size: 132 Copynumber: 2.5 Consensus size: 134
23293729 TATACAAATG
* * *
23293739 CCACTAAAGCAATGACATTTTTCTCATAAAAACG-TCACTAAATTAACGGCGTCTCAAAGATACA
1 CCACAAAAGCAATGGCATTTTTCTCATAAAAATGCT-ACTAAATTAACGGCGTCTCAAAGATACA
*
23293803 AATGCCATAATTATGAAAGCATTTTCAGATACAAACGCCTTTAAAGTAGCGACATTTTCAATTAC
65 AATGCCATAATTATGAAAGCATTTTCAGATACAAACGCCTTTAAAGTAACGACATTTTCAATTAC
**
23293868 AAATG
130 AAACA
* * *
23293873 CCACAAAAGCAATGGTATTTTTCTCATAAAAATGCTACTAAACTAACGGTGTCTCAAAGATACAA
1 CCACAAAAGCAATGGCATTTTTCTCATAAAAATGCTACTAAATTAACGGCGTCTCAAAGATACAA
* * * ** **
23293938 GCAT-CGC-TAA-TA-G-AGGTATTTTCATATACAAATTCCTTTAAAGTAACGATGTTTTCAATT
66 --ATGC-CATAATTATGAAAGCATTTTCAGATACAAACGCCTTTAAAGTAACGACATTTTCAATT
23293998 ACAAACA
128 ACAAACA
23294005 CCATC-AAAGCAATGGCATTTTTCTCATAAAAAAAT-C-ACTAAATTAGA-GGCGTCTCAAAGAT
1 CCA-CAAAAGCAATGGCATTTTTCTCAT--AAAAATGCTACTAAATTA-ACGGCGTCTCAAAGAT
23294066 ACAAA
62 ACAAA
23294071 CGCCTCTAAA
Statistics
Matches: 171, Mismatches: 19, Indels: 20
0.81 0.09 0.10
Matches are distributed among these distances:
130 1 0.01
132 93 0.54
133 4 0.02
134 65 0.38
135 5 0.03
136 3 0.02
ACGTcount: A:0.41, C:0.19, G:0.12, T:0.28
Consensus pattern (134 bp):
CCACAAAAGCAATGGCATTTTTCTCATAAAAATGCTACTAAATTAACGGCGTCTCAAAGATACAA
ATGCCATAATTATGAAAGCATTTTCAGATACAAACGCCTTTAAAGTAACGACATTTTCAATTACA
AACA
Found at i:23294181 original size:101 final size:101
Alignment explanation
Indices: 23293976--23294174 Score: 240
Period size: 101 Copynumber: 2.0 Consensus size: 101
23293966 CAAATTCCTT
** * *
23293976 TAAAGTAACGATGTTTTCAATTACAAACACCATCAAAGCAATGGCATTTTTCTCATAAAAAAATC
1 TAAAGTAACGACATTTTCAATTACAAACACCATCAAAGCAATGACATTTTTCTCATAAAAAAAGC
23294041 ACTAAATTAGAGGCGTCTCAAAGATACAAACGCCTC
66 ACTAAATTAGAGGCGTCTCAAAGATACAAACGCCTC
* *** * * *
23294077 TAAAGTAACGACATTTTCAGTTACAAACGTTATCAAAGCAATGACGTTTTTCTCAT-AAGAACGC
1 TAAAGTAACGACATTTTCAATTACAAACACCATCAAAGCAATGACATTTTTCTCATAAAAAAAGC
* * *
23294141 AACTAATTTAGTA-GCGTTTCAAAGATAGAAACGC
66 -ACTAAATTAG-AGGCGTCTCAAAGATACAAACGC
23294175 TGCTAAAATG
Statistics
Matches: 82, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
100 5 0.06
101 76 0.93
102 1 0.01
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (101 bp):
TAAAGTAACGACATTTTCAATTACAAACACCATCAAAGCAATGACATTTTTCTCATAAAAAAAGC
ACTAAATTAGAGGCGTCTCAAAGATACAAACGCCTC
Found at i:23296882 original size:10 final size:10
Alignment explanation
Indices: 23296863--23296902 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
23296853 GTATCATTTC
23296863 TTTT-TTTTT
1 TTTTCTTTTT
23296872 TTTTCTTTTT
1 TTTTCTTTTT
*
23296882 TTTTCATTTT
1 TTTTCTTTTT
*
23296892 TCTTCTTTTT
1 TTTTCTTTTT
23296902 T
1 T
23296903 CATGCAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 4 0.15
10 23 0.85
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:23296882 original size:13 final size:14
Alignment explanation
Indices: 23296859--23296885 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23296849 AATAGTATCA
23296859 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
23296873 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
23296886 CATTTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:23296903 original size:17 final size:17
Alignment explanation
Indices: 23296860--23296905 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
23296850 ATAGTATCAT
**
23296860 TTCTTTTTTTTTTTTTC
1 TTCTTTTTTCATTTTTC
*
23296877 TTTTTTTTTCATTTTTC
1 TTCTTTTTTCATTTTTC
23296894 TTCTTTTTTCAT
1 TTCTTTTTTCAT
23296906 GCAAATTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (17 bp):
TTCTTTTTTCATTTTTC
Found at i:23297535 original size:117 final size:117
Alignment explanation
Indices: 23297325--23297560 Score: 402
Period size: 117 Copynumber: 2.0 Consensus size: 117
23297315 TCTAATCTAA
*
23297325 AGGATGCTTCAAAACTGAATTCTTTAATGTATATTTTTTTTATGGTTAAGTACTGATTAAGTTGT
1 AGGATGCTTCAAAACTGAATTCTTTAATG-ATATGTTTTTTATGGTTAAGTACTGATTAAGTTGT
23297390 AATCTTTAATGTCAGTTGAGCCCCTTTTTAGCACTTTAAGCCAAAAAGTTTGAT
65 AATCTTTAATGTCAGTTGAGCCCCTTTTT-GCACTTTAAGCCAAAAAGTTTGAT
* * *
23297444 AGGATGCTTGAAAATTGAATTTTTTAATG-TATGTTTTTTATGGTTAAGTACTGATTAAGTTGTA
1 AGGATGCTTCAAAACTGAATTCTTTAATGATATGTTTTTTATGGTTAAGTACTGATTAAGTTGTA
*
23297508 ATCTTTAATGTCAGTTGAGCCCTTTTTTGCACTTTAAGCCAAAAAGTTTGAT
66 ATCTTTAATGTCAGTTGAGCCCCTTTTTGCACTTTAAGCCAAAAAGTTTGAT
23297560 A
1 A
23297561 ATCTTTTTTC
Statistics
Matches: 112, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
116 25 0.22
117 61 0.54
119 26 0.23
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (117 bp):
AGGATGCTTCAAAACTGAATTCTTTAATGATATGTTTTTTATGGTTAAGTACTGATTAAGTTGTA
ATCTTTAATGTCAGTTGAGCCCCTTTTTGCACTTTAAGCCAAAAAGTTTGAT
Found at i:23302566 original size:11 final size:11
Alignment explanation
Indices: 23302550--23302602 Score: 54
Period size: 11 Copynumber: 4.8 Consensus size: 11
23302540 ATGAAACGAT
23302550 ATAAAATTTAA
1 ATAAAATTTAA
* *
23302561 ATAAAAATTAT
1 ATAAAATTTAA
23302572 ATACAAATTT-A
1 ATA-AAATTTAA
* *
23302583 ATAAAATTCAC
1 ATAAAATTTAA
23302594 ATAAAATTT
1 ATAAAATTT
23302603 TTATATAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
10 5 0.15
11 23 0.70
12 5 0.15
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (11 bp):
ATAAAATTTAA
Found at i:23302624 original size:24 final size:23
Alignment explanation
Indices: 23302579--23302624 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
23302569 TATATACAAA
*
23302579 TTTAATAAAATTCACATAAAATT
1 TTTAATAAAATACACATAAAATT
23302602 TTTATATAAAATACA-ATATAAAT
1 TTTA-ATAAAATACACATA-AAAT
23302625 ATATAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (23 bp):
TTTAATAAAATACACATAAAATT
Found at i:23303467 original size:23 final size:22
Alignment explanation
Indices: 23303437--23303480 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
23303427 ATATATATAT
*
23303437 ATATATTAATATCAATTATTTTG
1 ATATATTAATATAAATT-TTTTG
*
23303460 ATATATTATTATAAATTTTTT
1 ATATATTAATATAAATTTTTT
23303481 AATTTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (22 bp):
ATATATTAATATAAATTTTTTG
Found at i:23303560 original size:22 final size:21
Alignment explanation
Indices: 23303535--23303593 Score: 54
Period size: 21 Copynumber: 2.8 Consensus size: 21
23303525 ATTATATTAT
23303535 TAATAATTTATAAAATAATATA
1 TAATAATTTATAAAATAA-ATA
23303557 TAAT-ATCTTA-AAAATCAAATA
1 TAATAAT-TTATAAAAT-AAATA
23303578 -AATAAGTTT-TAAAATA
1 TAATAA-TTTATAAAATA
23303594 TAACAAATAA
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
20 4 0.12
21 18 0.56
22 10 0.31
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (21 bp):
TAATAATTTATAAAATAAATA
Found at i:23309003 original size:10 final size:10
Alignment explanation
Indices: 23308984--23309023 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
23308974 GTATCATTTC
23308984 TTTT-TTTTT
1 TTTTCTTTTT
23308993 TTTTCTTTTT
1 TTTTCTTTTT
*
23309003 TTTTCATTTT
1 TTTTCTTTTT
*
23309013 TCTTCTTTTT
1 TTTTCTTTTT
23309023 T
1 T
23309024 CATGCAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 4 0.15
10 23 0.85
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.88
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:23309003 original size:13 final size:14
Alignment explanation
Indices: 23308980--23309006 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23308970 AATAGTATCA
23308980 TTTCTTTTTTTTTT
1 TTTCTTTTTTTTTT
23308994 TTTCTTTTTTTTT
1 TTTCTTTTTTTTT
23309007 CATTTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.00, C:0.07, G:0.00, T:0.93
Consensus pattern (14 bp):
TTTCTTTTTTTTTT
Found at i:23309024 original size:17 final size:17
Alignment explanation
Indices: 23308981--23309026 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
23308971 ATAGTATCAT
**
23308981 TTCTTTTTTTTTTTTTC
1 TTCTTTTTTCATTTTTC
*
23308998 TTTTTTTTTCATTTTTC
1 TTCTTTTTTCATTTTTC
23309015 TTCTTTTTTCAT
1 TTCTTTTTTCAT
23309027 GCAAATTCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.04, C:0.13, G:0.00, T:0.83
Consensus pattern (17 bp):
TTCTTTTTTCATTTTTC
Found at i:23309658 original size:116 final size:117
Alignment explanation
Indices: 23309449--23309683 Score: 402
Period size: 116 Copynumber: 2.0 Consensus size: 117
23309439 TCTAATCTAA
*
23309449 AGGATGCTTCAAAACTGAATTCTTTAATGTATATTTTTTTTATGGTTAAGTACTGATTAAGTTGT
1 AGGATGCTTCAAAACTGAATTCTTTAATG-ATATGTTTTTTATGGTTAAGTACTGATTAAGTTGT
23309514 AATCTTTAATGTCAGTTGAGCCCCTTTTTAGCACTTTAAGCCAAAAAGTTTGAT
65 AATCTTTAATGTCAGTTGAGCCCCTTTTT-GCACTTTAAGCCAAAAAGTTTGAT
* *
23309568 AGGATGCTTGAAAATTGAATT-TTTAATG-TATGTTTTTTATGGTTAAGTACTGATTAAGTTGTA
1 AGGATGCTTCAAAACTGAATTCTTTAATGATATGTTTTTTATGGTTAAGTACTGATTAAGTTGTA
*
23309631 ATCTTTAATGTCAGTTGAGCCCTTTTTTGCACTTTAAGCCAAAAAGTTTGAT
66 ATCTTTAATGTCAGTTGAGCCCCTTTTTGCACTTTAAGCCAAAAAGTTTGAT
23309683 A
1 A
23309684 ATCTTTTTTC
Statistics
Matches: 112, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
115 25 0.22
116 61 0.54
118 7 0.06
119 19 0.17
ACGTcount: A:0.29, C:0.11, G:0.17, T:0.43
Consensus pattern (117 bp):
AGGATGCTTCAAAACTGAATTCTTTAATGATATGTTTTTTATGGTTAAGTACTGATTAAGTTGTA
ATCTTTAATGTCAGTTGAGCCCCTTTTTGCACTTTAAGCCAAAAAGTTTGAT
Found at i:23314703 original size:11 final size:11
Alignment explanation
Indices: 23314685--23314750 Score: 55
Period size: 11 Copynumber: 5.8 Consensus size: 11
23314675 ATATGAAACG
23314685 ATATAAAATTT
1 ATATAAAATTT
*
23314696 -TAATAAAAATT
1 AT-ATAAAATTT
23314707 ATATACAAATTT
1 ATATA-AAATTT
*
23314719 A-ATAAAATTC
1 ATATAAAATTT
*
23314729 ACATAAAATTTTT
1 ATATAAAA--TTT
23314742 ATATAAAAT
1 ATATAAAAT
23314751 ACAATATATA
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
10 7 0.16
11 21 0.48
12 7 0.16
13 9 0.20
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (11 bp):
ATATAAAATTT
Found at i:23315602 original size:23 final size:22
Alignment explanation
Indices: 23315572--23315615 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
23315562 TTAAAAATAT
*
23315572 ATATATTAATATTAATTATTTTG
1 ATATATTAATATAAATT-TTTTG
*
23315595 ATATATTATTATAAATTTTTT
1 ATATATTAATATAAATTTTTT
23315616 AATTTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (22 bp):
ATATATTAATATAAATTTTTTG
Found at i:23315697 original size:23 final size:22
Alignment explanation
Indices: 23315670--23315729 Score: 56
Period size: 21 Copynumber: 2.8 Consensus size: 22
23315660 ATTATATTAT
23315670 TAATAATTTATAAAATAAATATA
1 TAATAATTTATAAAATAAA-ATA
*
23315693 TAAT-ATCTTA-AAAATCAAATA
1 TAATAAT-TTATAAAATAAAATA
23315714 -AATAAGTTT-TAAAATA
1 TAATAA-TTTATAAAATA
23315730 TAACAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
20 3 0.10
21 11 0.35
22 10 0.32
23 7 0.23
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.37
Consensus pattern (22 bp):
TAATAATTTATAAAATAAAATA
Found at i:23318178 original size:32 final size:32
Alignment explanation
Indices: 23318132--23318192 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
23318122 TAAAAGTTGA
*
23318132 GATTTTAGAGGTAGCTTCCTACCATATAGCAT
1 GATTTTAGACGTAGCTTCCTACCATATAGCAT
23318164 GATTTTAGACGTAGCTTCCTACCATATAG
1 GATTTTAGACGTAGCTTCCTACCATATAG
23318193 AACTTAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.34
Consensus pattern (32 bp):
GATTTTAGACGTAGCTTCCTACCATATAGCAT
Found at i:23319581 original size:26 final size:25
Alignment explanation
Indices: 23319536--23319593 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
23319526 TTTTTATTAA
23319536 AATTTTTTTCAATAGCAATTATAAC
1 AATTTTTTTCAATAGCAATTATAAC
* *
23319561 AACTTTTTTTCAATTA-TAATTATAAT
1 AA-TTTTTTTCAA-TAGCAATTATAAC
23319587 AATTTTT
1 AATTTTT
23319594 ATTACTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 7 0.24
26 20 0.69
27 2 0.07
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.52
Consensus pattern (25 bp):
AATTTTTTTCAATAGCAATTATAAC
Found at i:23328146 original size:2 final size:2
Alignment explanation
Indices: 23328139--23328163 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
23328129 TGATAAAGTA
23328139 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
23328164 CACACACTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:23328815 original size:28 final size:30
Alignment explanation
Indices: 23328783--23328839 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
23328773 TATAAAAATA
*
23328783 TATTTGT-C-TAAATAAATAAAATTATGAT
1 TATTTGTACATAAAAAAATAAAATTATGAT
*
23328811 TATTTTTACAATAAAAAAATAAAATTATG
1 TATTTGTAC-ATAAAAAAATAAAATTATG
23328840 TTAAAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 6 0.25
29 1 0.04
31 17 0.71
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (30 bp):
TATTTGTACATAAAAAAATAAAATTATGAT
Found at i:23329919 original size:3 final size:3
Alignment explanation
Indices: 23329911--23329943 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
23329901 TCCAATGAAT
23329911 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
23329944 TATAGATTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:23337172 original size:34 final size:34
Alignment explanation
Indices: 23337134--23337212 Score: 140
Period size: 34 Copynumber: 2.3 Consensus size: 34
23337124 CAACACTTAG
* *
23337134 TTGTTTAATCATCATGTGTAATTGTTTTTGTTGA
1 TTGTTTGATCATCACGTGTAATTGTTTTTGTTGA
23337168 TTGTTTGATCATCACGTGTAATTGTTTTTGTTGA
1 TTGTTTGATCATCACGTGTAATTGTTTTTGTTGA
23337202 TTGTTTGATCA
1 TTGTTTGATCA
23337213 CAGCATTTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 43 1.00
ACGTcount: A:0.19, C:0.08, G:0.19, T:0.54
Consensus pattern (34 bp):
TTGTTTGATCATCACGTGTAATTGTTTTTGTTGA
Found at i:23337193 original size:55 final size:54
Alignment explanation
Indices: 23337079--23337194 Score: 171
Period size: 55 Copynumber: 2.1 Consensus size: 54
23337069 ATCAGGCAAG
*
23337079 TTGTTTAATCATCATGTGTAATTGTTTTTGGTGATTGTTTGATAGCAACACTTAG
1 TTGTTTAATCATCATGTGTAATTGTTTTTGGTGATTGTTTGATA-CAACACTTAA
* *
23337134 TTGTTTAATCATCATGTGTAATTGTTTTTGTTGATTGTTTGAT-CATCACGTGTAA
1 TTGTTTAATCATCATGTGTAATTGTTTTTGGTGATTGTTTGATACAACAC-T-TAA
23337189 TTGTTT
1 TTGTTT
23337195 TTGTTGATTG
Statistics
Matches: 56, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
53 5 0.09
54 1 0.02
55 50 0.89
ACGTcount: A:0.22, C:0.09, G:0.19, T:0.51
Consensus pattern (54 bp):
TTGTTTAATCATCATGTGTAATTGTTTTTGGTGATTGTTTGATACAACACTTAA
Found at i:23337477 original size:30 final size:30
Alignment explanation
Indices: 23337438--23337494 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
23337428 TTAATTAATT
* * *
23337438 ATATATATATTTATATAATGATATTTTTAA
1 ATATATATATTTAAAAAATAATATTTTTAA
*
23337468 ATATTTATATTTAAAAAATAATATTTT
1 ATATATATATTTAAAAAATAATATTTT
23337495 ATTAATTTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.53
Consensus pattern (30 bp):
ATATATATATTTAAAAAATAATATTTTTAA
Found at i:23342918 original size:21 final size:21
Alignment explanation
Indices: 23342894--23342933 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
23342884 TAAATCAACG
23342894 AATGAGTCAAATGACACCACC
1 AATGAGTCAAATGACACCACC
23342915 AATGAGTCAAATGACACCA
1 AATGAGTCAAATGACACCA
23342934 GCACAGGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.25, G:0.15, T:0.15
Consensus pattern (21 bp):
AATGAGTCAAATGACACCACC
Found at i:23349685 original size:216 final size:216
Alignment explanation
Indices: 23349306--23349738 Score: 767
Period size: 216 Copynumber: 2.0 Consensus size: 216
23349296 AATTCTCTAT
23349306 TGATCTGGGTAAGGGGCCACCCAAAAGATTGGAAGAAATATTTAAAACTCGTAGATTCTTCATAT
1 TGATCTGGGTAAGGGGCCACCCAAAAGATTGGAAGAAATATTTAAAACTCGTAGATTCTTCATAT
*
23349371 TTCCAATTTCAGGAGGGATTGCACCTTGAAAAAGATTTGAATCCAGATACAAACAGTTCAAATTG
66 TTCCAATTTCAGGAGGGATTGCACCTTGAAAAAGATTTGAATCCAGATACAAACACTTCAAATTG
* * * *
23349436 GATAAATAAAATAGTGATGAAGGGATTAGGCCTGCAAGCTTGTTGTTGCTAAGATGCAATCGAAA
131 GATAAATAAAATAGTGATGAAGGGATCAGGCCTGCAAACTTGTTGCTGCTAAGATGCAACCGAAA
23349501 TAAATTCTTCATATTTCCAAC
196 TAAATTCTTCATATTTCCAAC
*
23349522 TGATTTGGGTAAGGGGCCACCCAAAAGATTGGAAGAAATATTTAAAACTCGTAGATTCTTCATAT
1 TGATCTGGGTAAGGGGCCACCCAAAAGATTGGAAGAAATATTTAAAACTCGTAGATTCTTCATAT
* * * *
23349587 TTCCAATTTCGGGAGGGATTGGACCTTGTAAAAGATTTGAATCCAGATACAAAGACTTCAAATTG
66 TTCCAATTTCAGGAGGGATTGCACCTTGAAAAAGATTTGAATCCAGATACAAACACTTCAAATTG
*
23349652 GATAAATTAAATAGTGATGAAGGGATCAGGCCTGCAAACTTGTTGCTGCTAAGATGCAACCGAAA
131 GATAAATAAAATAGTGATGAAGGGATCAGGCCTGCAAACTTGTTGCTGCTAAGATGCAACCGAAA
23349717 TAAATTCTTCATATTTCCAAC
196 TAAATTCTTCATATTTCCAAC
23349738 T
1 T
23349739 TCATGAAGGA
Statistics
Matches: 206, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
216 206 1.00
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (216 bp):
TGATCTGGGTAAGGGGCCACCCAAAAGATTGGAAGAAATATTTAAAACTCGTAGATTCTTCATAT
TTCCAATTTCAGGAGGGATTGCACCTTGAAAAAGATTTGAATCCAGATACAAACACTTCAAATTG
GATAAATAAAATAGTGATGAAGGGATCAGGCCTGCAAACTTGTTGCTGCTAAGATGCAACCGAAA
TAAATTCTTCATATTTCCAAC
Found at i:23349899 original size:144 final size:143
Alignment explanation
Indices: 23349576--23349920 Score: 364
Period size: 144 Copynumber: 2.4 Consensus size: 143
23349566 AAACTCGTAG
* * * *
23349576 ATTCTTCATATTTCCAATTTCGGGAGGGATTGGACCTTGTAAAAGATTTGAATCCAGATACAAAG
1 ATTCTTCATATTTCCAATTTCAGGAGAGATCGGACCTTGTAAAAGATTTGAATCAAGATACAAAG
* * *
23349641 ACTTCAAATTGGATAAATTAAATAGTGATGAAGGGATCAGGCCTGCAAACTTGTTGCTGCTAAGA
66 ACCTCAAATTGGATAAATTAAATAGTGATGAAGAGATCAGGCCTG-AAACTTGTTGCTACTAAGA
*
23349706 TGCAACCGAAATAA
130 TGCAACCGAAACAA
* * * *
23349720 ATTCTTCATATTTCCAACTTCATGA-AGGA-CTGGACCTTGTAAAAGATTTGATTCAAGATATAA
1 ATTCTTCATATTTCCAATTTCAGGAGA-GATC-GGACCTTGTAAAAGATTTGAATCAAGATACAA
*
23349783 AGACCTCAAATTGGATAAATTAGATAGTGATGAAGAGATC-GGACCCTTG-AACTTGTTG-TAAC
64 AGACCTCAAATTGGATAAATTAAATAGTGATGAAGAGATCAGG--CC-TGAAACTTGTTGCT-AC
* * *
23349845 TGAGAT-CTAATTC-AACCAA
125 TAAGATGC-AA-CCGAAACAA
* * * *
23349864 GTTCTTCATGTTTCCTATTTCAGGAGAGATCGGACCTTGCAGAAA-ATTTGAATCAAG
1 ATTCTTCATATTTCCAATTTCAGGAGAGATCGGACCTTGTA-AAAGATTTGAATCAAG
23349921 GGACAAATAC
Statistics
Matches: 167, Mismatches: 23, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
143 4 0.02
144 153 0.92
145 8 0.05
146 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (143 bp):
ATTCTTCATATTTCCAATTTCAGGAGAGATCGGACCTTGTAAAAGATTTGAATCAAGATACAAAG
ACCTCAAATTGGATAAATTAAATAGTGATGAAGAGATCAGGCCTGAAACTTGTTGCTACTAAGAT
GCAACCGAAACAA
Found at i:23350190 original size:72 final size:71
Alignment explanation
Indices: 23349967--23350178 Score: 262
Period size: 72 Copynumber: 2.9 Consensus size: 71
23349957 AGGGAATATC
* * * * *
23349967 CCAGTGATTTGGTTATAGCTTAGGTCCAATTGTTTCAAATTGATTAAATTACCTAGGGTAGAAGG
1 CCAGTAATATGGTTATAGCTTAGGTCCAA-AGTTTCAAATTGGTTAAATTACCCAGGGTAGAAGG
23350032 GATGGGA
65 GATGGGA
* ** * *
23350039 CTAGTAATATGGTTATCTCTTAGGTCCAAAAATTTTAAATTGGTTAAATTACCCAGGGTAGAAGG
1 CCAGTAATATGGTTATAGCTTAGGTCC-AAAGTTTCAAATTGGTTAAATTACCCAGGGTAGAAGG
23350104 GATGGGA
65 GATGGGA
* * * * *
23350111 CCAGTAATATGGTTATAGCTTAGTTCCAAGGTTCCCAAATTGGTTAAATTACCCAAGGTAAAAGG
1 CCAGTAATATGGTTATAGCTTAGGTCCAAAGTT-TCAAATTGGTTAAATTACCCAGGGTAGAAGG
23350176 GAT
65 GAT
23350179 AAGACCGGTA
Statistics
Matches: 118, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
71 4 0.03
72 112 0.95
73 2 0.02
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (71 bp):
CCAGTAATATGGTTATAGCTTAGGTCCAAAGTTTCAAATTGGTTAAATTACCCAGGGTAGAAGGG
ATGGGA
Found at i:23352468 original size:25 final size:25
Alignment explanation
Indices: 23352440--23352549 Score: 147
Period size: 25 Copynumber: 4.6 Consensus size: 25
23352430 GTGAATCCTT
23352440 AAATGAGAATCTTTAAGAAGTTTTC
1 AAATGAGAATCTTTAAGAAGTTTTC
* * *
23352465 AAATAAAAATCTTT--G-AGTCTT-
1 AAATGAGAATCTTTAAGAAGTTTTC
*
23352486 AAATGAGAATCTTTAAGAGGTTTTC
1 AAATGAGAATCTTTAAGAAGTTTTC
*
23352511 AAATGAGAATCTTTAAGAGGTTTTC
1 AAATGAGAATCTTTAAGAAGTTTTC
23352536 AAATGAGAATCTTT
1 AAATGAGAATCTTT
23352550 GAGTTTCAAA
Statistics
Matches: 74, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
21 12 0.16
22 5 0.07
23 2 0.03
24 4 0.05
25 51 0.69
ACGTcount: A:0.39, C:0.08, G:0.16, T:0.36
Consensus pattern (25 bp):
AAATGAGAATCTTTAAGAAGTTTTC
Found at i:23352489 original size:46 final size:48
Alignment explanation
Indices: 23352437--23352549 Score: 158
Period size: 46 Copynumber: 2.4 Consensus size: 48
23352427 ATTGTGAATC
23352437 CTTAAATGAGAATCTTTAAGAAGTTTTCAAATAAAAATCTTT-GA-GT
1 CTTAAATGAGAATCTTTAAGAAGTTTTCAAATAAAAATCTTTAGAGGT
* * *
23352483 CTTAAATGAGAATCTTTAAGAGGTTTTCAAATGAGAATCTTTAAGAGGT
1 CTTAAATGAGAATCTTTAAGAAGTTTTCAAATAAAAATCTTT-AGAGGT
*
23352532 TTTCAAATGAGAATCTTT
1 CTT-AAATGAGAATCTTT
23352550 GAGTTTCAAA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
46 39 0.66
48 2 0.03
49 4 0.07
50 14 0.24
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.37
Consensus pattern (48 bp):
CTTAAATGAGAATCTTTAAGAAGTTTTCAAATAAAAATCTTTAGAGGT
Found at i:23352557 original size:46 final size:44
Alignment explanation
Indices: 23352437--23352573 Score: 143
Period size: 46 Copynumber: 3.0 Consensus size: 44
23352427 ATTGTGAATC
*
23352437 CTTAAATGAGAATCTTTAAGAAGTTTTCAAATAAAAATCTTTGAGT
1 CTTAAATGAGAATCTTT-AG-AGTTTTCAAATAAGAATCTTTGAGT
*
23352483 CTTAAATGAGAATCTTTAAGAGGTTTTCAAATGAGAATCTTTAAGAGGT
1 CTTAAATGAGAATCTTT-AGA-GTTTTCAAATAAGAATCTTT--GA-GT
* * *
23352532 TTTCAAATGAGAATCTTT-GAG-TTTCAAATTAGTATCTTTGAG
1 CTT-AAATGAGAATCTTTAGAGTTTTCAAATAAGAATCTTTGAG
23352574 ATATGATACC
Statistics
Matches: 81, Mismatches: 5, Indels: 13
0.82 0.05 0.13
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 1 0.01
46 54 0.67
47 1 0.01
48 4 0.05
49 4 0.05
50 14 0.17
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (44 bp):
CTTAAATGAGAATCTTTAGAGTTTTCAAATAAGAATCTTTGAGT
Found at i:23352699 original size:21 final size:19
Alignment explanation
Indices: 23352657--23352700 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
23352647 ATCTAAATTT
* *
23352657 TTTAATGAGAACCTTCAAA
1 TTTAATGAGAAACTTAAAA
23352676 TTTAGATGAGAAACTCTAAAA
1 TTTA-ATGAGAAACT-TAAAA
23352697 TTTA
1 TTTA
23352701 TCGAATGTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 9 0.43
21 8 0.38
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (19 bp):
TTTAATGAGAAACTTAAAA
Found at i:23352784 original size:94 final size:94
Alignment explanation
Indices: 23352623--23352816 Score: 262
Period size: 94 Copynumber: 2.1 Consensus size: 94
23352613 CTATAATGAA
* * ** * * * * *
23352623 AAACTTGAATTTTTGGATATGAATATCTAAATTTTTTAATGAGAACCTTCAAATTTAGATGAGAA
1 AAACTCGAACTTTTGGATACAAATATCTAAATTTTTTAATAAAAACATTCAAACTTAGATGAAAA
23352688 ACTCTAAAATTTATCGAATGTGAATCTTT
66 ACTCTAAAATTTATCGAATGTGAATCTTT
* **
23352717 AAACTCGAACTTTTGGATACAAATCTCTAAATTTTTTAATAAAAACATTTGAACTTAGATGAAAA
1 AAACTCGAACTTTTGGATACAAATATCTAAATTTTTTAATAAAAACATTCAAACTTAGATGAAAA
*
23352782 ACTCTAAAATTTATTGAATGTGAATCTTT
66 ACTCTAAAATTTATCGAATGTGAATCTTT
*
23352811 GAACTC
1 AAACTC
23352817 AAATGAGGAG
Statistics
Matches: 86, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
94 86 1.00
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (94 bp):
AAACTCGAACTTTTGGATACAAATATCTAAATTTTTTAATAAAAACATTCAAACTTAGATGAAAA
ACTCTAAAATTTATCGAATGTGAATCTTT
Found at i:23353493 original size:44 final size:43
Alignment explanation
Indices: 23353359--23353574 Score: 222
Period size: 43 Copynumber: 5.0 Consensus size: 43
23353349 ATTATTGTCA
** * *
23353359 AGGAGCTTTATTTATTTTTTAAAGTTGTTAAGCCTCTATTTAG
1 AGGAGCTTTATTTATTTTCAAAAGTCGTTGAGCCTCTATTTAG
* *
23353402 ATGAGCCTTATTTACTTTTC-AAAGTCGTTGAGCCTCTGATTT-G
1 AGGAGCTTTATTTA-TTTTCAAAAGTCGTTGAGCCTCT-ATTTAG
* * *
23353445 AGGAGCTTTATTTATTTTTCAAAAGTCATTAAGCCTCTATTTAT
1 AGGAGCTTTATTTA-TTTTCAAAAGTCGTTGAGCCTCTATTTAG
* * * * *
23353489 AGGAGTTTTGTTTATTGTCCAAAGTTGTTGAGCCTCTGA-TTAG
1 AGGAGCTTTATTTATTTTCAAAAGTCGTTGAGCCTCT-ATTTAG
* *
23353532 AGGAGCTTTGTTTATTTTCTAAAAGTCGTTGAGCCTCTGTTTA
1 AGGAGCTTTATTTATTTTC-AAAAGTCGTTGAGCCTCTATTTA
23353575 AAGAAACCAT
Statistics
Matches: 142, Mismatches: 24, Indels: 13
0.79 0.13 0.07
Matches are distributed among these distances:
43 87 0.61
44 55 0.39
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (43 bp):
AGGAGCTTTATTTATTTTCAAAAGTCGTTGAGCCTCTATTTAG
Found at i:23353512 original size:87 final size:87
Alignment explanation
Indices: 23353359--23353574 Score: 267
Period size: 87 Copynumber: 2.5 Consensus size: 87
23353349 ATTATTGTCA
* * * *
23353359 AGGAGCTTTATTTATTTTT-TAAAGTTGTTAAGCCTCTATTTAGATGAGCCTTATTTACTTTTCA
1 AGGAGCTTTATTTATTTTTCAAAAGTCGTTAAGCCTCTATTTAGAGGAGCCTTATTTACTTTCCA
*
23353423 AAGTCGTTGAGCCTCTGATTTG
66 AAGTCGTTGAGCCTCTGATTAG
* * ** *
23353445 AGGAGCTTTATTTATTTTTCAAAAGTCATTAAGCCTCTATTTATAGGAGTTTTGTTTA-TTGTCC
1 AGGAGCTTTATTTATTTTTCAAAAGTCGTTAAGCCTCTATTTAGAGGAGCCTTATTTACTT-TCC
*
23353509 AAAGTTGTTGAGCCTCTGATTAG
65 AAAGTCGTTGAGCCTCTGATTAG
* * *
23353532 AGGAGCTTTGTTTA-TTTTCTAAAAGTCGTTGAGCCTCTGTTTA
1 AGGAGCTTTATTTATTTTTC-AAAAGTCGTTAAGCCTCTATTTA
23353575 AAGAAACCAT
Statistics
Matches: 112, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
86 26 0.23
87 86 0.77
ACGTcount: A:0.24, C:0.13, G:0.19, T:0.44
Consensus pattern (87 bp):
AGGAGCTTTATTTATTTTTCAAAAGTCGTTAAGCCTCTATTTAGAGGAGCCTTATTTACTTTCCA
AAGTCGTTGAGCCTCTGATTAG
Found at i:23355533 original size:26 final size:25
Alignment explanation
Indices: 23355477--23355543 Score: 73
Period size: 26 Copynumber: 2.7 Consensus size: 25
23355467 TCCAATAATA
*
23355477 AAATTTTTA-AAAATTTCAAATGAT
1 AAATTTTTATAAAATTTCAAATGAG
*
23355501 AAATTTTTATAAAATTTCAAGGTGAG
1 AAATTTTTATAAAATTTCAA-ATGAG
* * *
23355527 AATTTTTTTTTAAATTT
1 AAATTTTTATAAAATTT
23355544 ATCCTAAACG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
24 9 0.25
25 10 0.28
26 17 0.47
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (25 bp):
AAATTTTTATAAAATTTCAAATGAG
Found at i:23367655 original size:23 final size:25
Alignment explanation
Indices: 23367606--23367656 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
23367596 ATTTGTGACG
*
23367606 ATAATTATGTTACCAATACTGTGATA
1 ATAATTATGTTACCAATA-TCTGATA
23367632 ATAATTATGTTACCAAT-TCT-ATA
1 ATAATTATGTTACCAATATCTGATA
23367655 AT
1 AT
23367657 GATTCACCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 5 0.21
24 2 0.08
26 17 0.71
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (25 bp):
ATAATTATGTTACCAATATCTGATA
Found at i:23376637 original size:15 final size:16
Alignment explanation
Indices: 23376604--23376639 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
23376594 CGATGAACTA
23376604 ATGATAATGAAGATTT
1 ATGATAATGAAGATTT
*
23376620 ATGATAATGAA-TTTT
1 ATGATAATGAAGATTT
23376635 ATGAT
1 ATGAT
23376640 TTTGAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.42, C:0.00, G:0.17, T:0.42
Consensus pattern (16 bp):
ATGATAATGAAGATTT
Found at i:23377141 original size:13 final size:13
Alignment explanation
Indices: 23377123--23377147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23377113 AATTTTCTTA
23377123 TTATTTTAAGATT
1 TTATTTTAAGATT
23377136 TTATTTTAAGAT
1 TTATTTTAAGAT
23377148 AACATATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (13 bp):
TTATTTTAAGATT
Found at i:23381612 original size:126 final size:126
Alignment explanation
Indices: 23381395--23381642 Score: 351
Period size: 126 Copynumber: 2.0 Consensus size: 126
23381385 CAAGTAATCA
* * *
23381395 GGAATAGGACCCTCTAGAGAATTATATGACAGATTGAGGCTCTGGAGAAACTCGAAAGATTCAGG
1 GGAATAGGACCCTCTAGAGAATTATATGACAGATTAAGGCTATGCAGAAACTCGAAAGATTCAGG
* * *
23381460 AATTGTGCCCGTTAGATAATTATGGCTGAGATCCAAAACTGTTAAGT-ATCTCAAGTGGTCT
66 AATTATGCCCGTTAGATAATTATGGCTGAGATCCAAAACTCTCAAGTAATC-CAAGTGGTCT
*
23381521 GGAATAGGACCCTCTAGAGAATTATATGACAGATTAAGGCTATTCA-AAGAC-CTGAAAGATTCA
1 GGAATAGGACCCTCTAGAGAATTATATGACAGATTAAGGCTATGCAGAA-ACTC-GAAAGATTCA
* *
23381584 GGAATTATGCCC-TTCAGATTATTTTGGCTGAGATCCAAAACTCTCAAGTAATCCAAGTG
64 GGAATTATGCCCGTT-AGATAATTATGGCTGAGATCCAAAACTCTCAAGTAATCCAAGTG
23381643 ATCAAGATGC
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
125 5 0.05
126 101 0.93
127 3 0.03
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (126 bp):
GGAATAGGACCCTCTAGAGAATTATATGACAGATTAAGGCTATGCAGAAACTCGAAAGATTCAGG
AATTATGCCCGTTAGATAATTATGGCTGAGATCCAAAACTCTCAAGTAATCCAAGTGGTCT
Found at i:23382107 original size:72 final size:71
Alignment explanation
Indices: 23382025--23382211 Score: 243
Period size: 72 Copynumber: 2.6 Consensus size: 71
23382015 AGTGATTCGG
*
23382025 TTATAGCTTAGGTCCAATA-GTATCAAAGTGGTTAAATTACCCAAAGTAGAAGGGATGGGACCAG
1 TTATAGCTTAGGTCCAA-AGGT-TCAAATTGGTTAAATTACCCAAAGTAGAAGGGATGGGACCAG
23382089 TAATATGA
64 TAATATGA
* * * *
23382097 TTATGGCTTAGGTCCAAAATGTTCAAATTGGTTAAATTACCCAGAGTAGAAGGGATGTGACCAGT
1 TTATAGCTTAGGTCC-AAAGGTTCAAATTGGTTAAATTACCCAAAGTAGAAGGGATGGGACCAGT
*
23382162 AATATGG
65 AATATGA
* *
23382169 TTATTGCTTAGAT-CAAAGGTTTCCAAATTGGTTAAATTACCCA
1 TTATAGCTTAGGTCCAAAGG-TT-CAAATTGGTTAAATTACCCA
23382212 GGGTAAAAGG
Statistics
Matches: 103, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
70 4 0.04
71 3 0.03
72 92 0.89
73 4 0.04
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (71 bp):
TTATAGCTTAGGTCCAAAGGTTCAAATTGGTTAAATTACCCAAAGTAGAAGGGATGGGACCAGTA
ATATGA
Found at i:23382236 original size:72 final size:72
Alignment explanation
Indices: 23382025--23382236 Score: 232
Period size: 72 Copynumber: 2.9 Consensus size: 72
23382015 AGTGATTCGG
* * * * * *
23382025 TTATAGCTTAGGTCCAATA-GTATCAAAGTGGTTAAATTACCCAAAGTAGAAGGGATGGGACCAG
1 TTATGGCTTAGATCCAAAATGT-TCAAATTGGTTAAATTACCCAGAGTAGAAGGGATGAGACCAG
23382089 TAATATGA
65 TAATATGA
* *
23382097 TTATGGCTTAGGTCCAAAATGTTCAAATTGGTTAAATTACCCAGAGTAGAAGGGATGTGACCAGT
1 TTATGGCTTAGATCCAAAATGTTCAAATTGGTTAAATTACCCAGAGTAGAAGGGATGAGACCAGT
*
23382162 AATATGG
66 AATATGA
* * * * * * *
23382169 TTATTGCTTAGAT-C-AAAGGTTTCCAAATTGGTTAAATTACCCAGGGTAAAAGGGCTAAGACCG
1 TTATGGCTTAGATCCAAAATG-TT-CAAATTGGTTAAATTACCCAGAGTAGAAGGGATGAGACCA
23382232 GTAAT
64 GTAAT
23382237 GTTGCAACTC
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
70 4 0.03
71 3 0.02
72 113 0.93
73 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.24, T:0.28
Consensus pattern (72 bp):
TTATGGCTTAGATCCAAAATGTTCAAATTGGTTAAATTACCCAGAGTAGAAGGGATGAGACCAGT
AATATGA
Found at i:23384403 original size:2 final size:2
Alignment explanation
Indices: 23384396--23384443 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
23384386 TTAATCATTC
23384396 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23384438 AT AT AT
1 AT AT AT
23384444 GGTTCAAGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23385322 original size:21 final size:22
Alignment explanation
Indices: 23385296--23385342 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
23385286 TTAATTATTA
23385296 ATAACTT-GTAATAAA-TCAATG
1 ATAACTTAGTAATAAATTC-ATG
23385317 ATAACTTAGTAATAAATTCATG
1 ATAACTTAGTAATAAATTCATG
23385339 ATAA
1 ATAA
23385343 ATTGGTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 7 0.29
22 15 0.62
23 2 0.08
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (22 bp):
ATAACTTAGTAATAAATTCATG
Found at i:23385595 original size:21 final size:21
Alignment explanation
Indices: 23385544--23385615 Score: 83
Period size: 22 Copynumber: 3.4 Consensus size: 21
23385534 AACTGATACT
*
23385544 TTAATAGTAAATCATAGATAAC
1 TTAATAGTAAATTAT-GATAAC
*
23385566 TTAATAGTAAATTAATGATAGC
1 TTAATAGTAAATT-ATGATAAC
*
23385588 TT-ATAGTAAATTATGATAAT
1 TTAATAGTAAATTATGATAAC
*
23385608 TTAGTAGT
1 TTAATAGT
23385616 GATTAAATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
20 8 0.19
21 14 0.33
22 19 0.44
23 2 0.05
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.39
Consensus pattern (21 bp):
TTAATAGTAAATTATGATAAC
Found at i:23385711 original size:22 final size:22
Alignment explanation
Indices: 23385671--23385712 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
23385661 TAATAAATTA
**
23385671 ATAATAAAATAATTGTAAATGT
1 ATAATAAAATAATACTAAATGT
*
23385693 ATAATAACATAATACTAAAT
1 ATAATAAAATAATACTAAAT
23385713 ACTAATAACT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.57, C:0.05, G:0.05, T:0.33
Consensus pattern (22 bp):
ATAATAAAATAATACTAAATGT
Found at i:23386892 original size:26 final size:25
Alignment explanation
Indices: 23386858--23386906 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
23386848 AGTTTGGGGG
* *
23386858 ATATATTTAGTTATATTATTTTTAAT
1 ATATATTTACTT-TATTAATTTTAAT
*
23386884 ATATTTTTACTTTATTAATTTTA
1 ATATATTTACTTTATTAATTTTA
23386907 TGTTATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 10 0.50
26 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (25 bp):
ATATATTTACTTTATTAATTTTAAT
Found at i:23387470 original size:98 final size:98
Alignment explanation
Indices: 23387301--23387497 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
23387291 AAGTGATTTC
*
23387301 CAGACCAATCTCTCAGTCGAATTTAAACGAGTTTGCTTTGGAAGTCAAGGTCTTCCTTCTACATA
1 CAGACCAATCTCTCAGTCGAATTTAAACAAGTTTGCTTTGGAAGTCAAGGTCTTCCTTCTACATA
23387366 TCTTCTTGTTTGAGCCCACTAGTTACGGCTCGG
66 TCTTCTTGTTTGAGCCCACTAGTTACGGCTCGG
23387399 CAGACCAATCTCTCAGTCGAATTTAAACAAGTTTGCTTTGGAAGTCAAGGTCTTCCTTCTACATA
1 CAGACCAATCTCTCAGTCGAATTTAAACAAGTTTGCTTTGGAAGTCAAGGTCTTCCTTCTACATA
23387464 TCTTCTTGTTTGAGCCCACTAGTTACGGCTCGG
66 TCTTCTTGTTTGAGCCCACTAGTTACGGCTCGG
23387497 C
1 C
23387498 TTCCCTTGAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.34
Consensus pattern (98 bp):
CAGACCAATCTCTCAGTCGAATTTAAACAAGTTTGCTTTGGAAGTCAAGGTCTTCCTTCTACATA
TCTTCTTGTTTGAGCCCACTAGTTACGGCTCGG
Found at i:23407190 original size:20 final size:21
Alignment explanation
Indices: 23407139--23407190 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
23407129 TATTTAGTAA
*
23407139 ATAAAATTTTTATTAAATAAT
1 ATAAAATTATTATTAAATAAT
23407160 AT-AAATTATTATTTTAAATTAAT
1 ATAAAATTATTA--TTAAA-TAAT
23407183 -TAAAATTA
1 ATAAAATTA
23407191 ATATATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 8 0.31
21 2 0.08
22 6 0.23
23 10 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATAAAATTATTATTAAATAAT
Found at i:23407352 original size:6 final size:6
Alignment explanation
Indices: 23407341--23407370 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
23407331 AATACCCATG
23407341 GGGATA GGGATA GGGATA GGGATA GGGATA
1 GGGATA GGGATA GGGATA GGGATA GGGATA
23407371 AATTTTAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.50, T:0.17
Consensus pattern (6 bp):
GGGATA
Found at i:23407797 original size:13 final size:13
Alignment explanation
Indices: 23407758--23407799 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
23407748 TTTCTTTTTT
23407758 AAAAA-TTTTTAA
1 AAAAATTTTTTAA
**
23407770 AAATAATTTGATAA
1 AAA-AATTTTTTAA
23407784 AAAAATTTTTTAA
1 AAAAATTTTTTAA
23407797 AAA
1 AAA
23407800 TCTAAATTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 3 0.12
13 13 0.54
14 8 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (13 bp):
AAAAATTTTTTAA
Found at i:23414722 original size:27 final size:27
Alignment explanation
Indices: 23414661--23414727 Score: 66
Period size: 29 Copynumber: 2.4 Consensus size: 27
23414651 TTATATTAAT
*
23414661 TATTAAA--TTTATAATTCAAATATCA
1 TATTAAATTTTTAAAATTCAAATATCA
* *
23414686 CATTTGAAATTTTTAAAATTTAAATATCA
1 TA-TT-AAATTTTTAAAATTCAAATATCA
23414715 TATTAAATATTTT
1 TATTAAAT-TTTT
23414728 TATTTATTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
25 1 0.03
26 2 0.06
27 7 0.21
28 6 0.18
29 17 0.52
ACGTcount: A:0.45, C:0.06, G:0.01, T:0.48
Consensus pattern (27 bp):
TATTAAATTTTTAAAATTCAAATATCA
Found at i:23414726 original size:29 final size:29
Alignment explanation
Indices: 23414668--23414729 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
23414658 AATTATTAAA
* *
23414668 TTTATAATTCAAATATCACATTTGAAATT
1 TTTAAAATTCAAATATCACATTTAAAATT
* *
23414697 TTTAAAATTTAAATATCATA-TTAAATATT
1 TTTAAAATTCAAATATCACATTTAAA-ATT
23414726 TTTA
1 TTTA
23414730 TTTATTATTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 4 0.14
29 24 0.86
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (29 bp):
TTTAAAATTCAAATATCACATTTAAAATT
Found at i:23418618 original size:13 final size:13
Alignment explanation
Indices: 23418602--23418634 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
23418592 GATAATAAAA
23418602 AAATTATAAA-ATT
1 AAATT-TAAATATT
23418615 AAATTTAAATATT
1 AAATTTAAATATT
23418628 AAATTTA
1 AAATTTA
23418635 TTGAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AAATTTAAATATT
Found at i:23429463 original size:51 final size:52
Alignment explanation
Indices: 23429382--23429484 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 52
23429372 TCATTAAACT
*
23429382 GAGTAAAGTATTGAAATTTTAAAAATGAGAAGGTTTTATTGAATTTAAAGTG
1 GAGTAAAGTATTGAAAATTTAAAAATGAGAAGGTTTTATTGAATTTAAAGTG
23429434 GAGTAAAGTATTGAAAATTT-AAAATGAGAAGGTTTTATTGAATTTAAAGTG
1 GAGTAAAGTATTGAAAATTTAAAAATGAGAAGGTTTTATTGAATTTAAAGTG
23429485 ACCATTCATT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
51 31 0.62
52 19 0.38
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (52 bp):
GAGTAAAGTATTGAAAATTTAAAAATGAGAAGGTTTTATTGAATTTAAAGTG
Found at i:23429481 original size:25 final size:25
Alignment explanation
Indices: 23429403--23429481 Score: 83
Period size: 25 Copynumber: 3.1 Consensus size: 25
23429393 TGAAATTTTA
23429403 AAAATGAGAAGGTTTTATTGAATTT
1 AAAATGAGAAGGTTTTATTGAATTT
* *
23429428 AAAGTGGAGTAAAG---TATTGAAAATTT
1 AAAAT-GAG-AAGGTTTTATTG--AATTT
23429454 AAAATGAGAAGGTTTTATTGAATTT
1 AAAATGAGAAGGTTTTATTGAATTT
23429479 AAA
1 AAA
23429482 GTGACCATTC
Statistics
Matches: 43, Mismatches: 4, Indels: 14
0.70 0.07 0.23
Matches are distributed among these distances:
24 8 0.19
25 15 0.35
26 12 0.28
27 8 0.19
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.35
Consensus pattern (25 bp):
AAAATGAGAAGGTTTTATTGAATTT
Found at i:23431491 original size:7 final size:7
Alignment explanation
Indices: 23431481--23431505 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23431471 AGACTTTCTC
23431481 TTTTATT
1 TTTTATT
23431488 TTTTATT
1 TTTTATT
23431495 TTTTATT
1 TTTTATT
23431502 TTTT
1 TTTT
23431506 TGCAGGCTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTATT
Found at i:23436643 original size:17 final size:15
Alignment explanation
Indices: 23436618--23436666 Score: 71
Period size: 15 Copynumber: 3.1 Consensus size: 15
23436608 ATTTTTTTGG
23436618 AAATAAATTTTTAAA
1 AAATAAATTTTTAAA
*
23436633 AAATCATAATTTTTCAA
1 AAAT-A-AATTTTTAAA
23436650 AAATAAATTTTTAAA
1 AAATAAATTTTTAAA
23436665 AA
1 AA
23436667 CTTTTAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 15 0.50
16 2 0.07
17 13 0.43
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (15 bp):
AAATAAATTTTTAAA
Found at i:23436680 original size:9 final size:10
Alignment explanation
Indices: 23436654--23436722 Score: 59
Period size: 10 Copynumber: 6.5 Consensus size: 10
23436644 TTTCAAAAAT
23436654 AAATTTTTAA
1 AAATTTTTAA
*
23436664 AAACTTTT-A
1 AAATTTTTAA
23436673 AAATTTTTCGAA
1 AAATTTTT--AA
23436685 AATTTATTTTTAA
1 AA---ATTTTTAA
*
23436698 AAAATTTTAA
1 AAATTTTTAA
*
23436708 AACTTTTTAA
1 AAATTTTTAA
23436718 AAATT
1 AAATT
23436723 CATTTTCAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
9 8 0.17
10 26 0.55
12 3 0.06
13 4 0.09
15 6 0.13
ACGTcount: A:0.46, C:0.04, G:0.01, T:0.48
Consensus pattern (10 bp):
AAATTTTTAA
Found at i:23436687 original size:34 final size:33
Alignment explanation
Indices: 23436569--23436715 Score: 109
Period size: 34 Copynumber: 4.4 Consensus size: 33
23436559 TATTTTTTTT
* * *
23436569 TTTTCAAATTTTT-GAAAATAAATTTTCAGAAAG
1 TTTTAAAATTTTTCGAAAATAAATTTTTA-AAAA
** * * * *
23436602 TCATAGATTTTTTTGGAAATAAATTTTTAAAAA
1 TTTTAAAATTTTTCGAAAATAAATTTTTAAAAA
* * * *
23436635 -ATCATAATTTTTCAAAAATAAATTTTTAAAAA
1 TTTTAAAATTTTTCGAAAATAAATTTTTAAAAA
**
23436667 CTTTTAAAATTTTTCGAAAATTTATTTTTAAAAAA
1 -TTTTAAAATTTTTCGAAAATAAATTTTT-AAAAA
23436702 TTTTAAAACTTTTT
1 TTTTAAAA-TTTTT
23436716 AAAAATTCAT
Statistics
Matches: 87, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
32 24 0.28
33 11 0.13
34 42 0.48
35 10 0.11
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (33 bp):
TTTTAAAATTTTTCGAAAATAAATTTTTAAAAA
Found at i:23436721 original size:34 final size:34
Alignment explanation
Indices: 23436618--23436733 Score: 121
Period size: 34 Copynumber: 3.5 Consensus size: 34
23436608 ATTTTTTTGG
* * *
23436618 AAATAAATTTTTAAAAAA--TCATAATTTTTCAA
1 AAATTAATTTTTAAAAAATTTTAAAATTTTTCAA
* * *
23436650 AAATAAATTTTTAAAAACTTTTAAAATTTTTCGA
1 AAATTAATTTTTAAAAAATTTTAAAATTTTTCAA
*
23436684 AAATTTATTTTTAAAAAATTTTAAAACTTTTT-AA
1 AAATTAATTTTTAAAAAATTTTAAAA-TTTTTCAA
* *
23436718 AAATTCATTTTCAAAA
1 AAATTAATTTTTAAAA
23436734 GTTCTGAATC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
32 17 0.24
34 49 0.69
35 5 0.07
ACGTcount: A:0.49, C:0.06, G:0.01, T:0.44
Consensus pattern (34 bp):
AAATTAATTTTTAAAAAATTTTAAAATTTTTCAA
Found at i:23438266 original size:13 final size:13
Alignment explanation
Indices: 23438248--23438275 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23438238 TATTTATTAG
23438248 ATATTTTAATAAA
1 ATATTTTAATAAA
23438261 ATATTTTAATAAA
1 ATATTTTAATAAA
23438274 AT
1 AT
23438276 CAATAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATTTTAATAAA
Found at i:23438377 original size:177 final size:177
Alignment explanation
Indices: 23438077--23438595 Score: 817
Period size: 177 Copynumber: 3.0 Consensus size: 177
23438067 AATATATCTA
*
23438077 AAAATATTTTAATAAAATCAATAAAAAAATCATATTAAATGAATTTAAATGAGCTTTCACGATGT
1 AAAATATTTTAATAAAATCAATAAAAAAATCATATT--A--AATTTAAATGAGCTTTCACAATGT
* *
23438142 GAACCTATTTGGATTTGACTTATTAAATATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGT
62 GAACCTAATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGT
23438207 TCAATTTGAATATAAAATTATAAGAAATAGATATTTATTAGATATTTTAAT
127 TCAATTTGAATATAAAATTATAAGAAATAGATATTTATTAGATATTTTAAT
*
23438258 AAAATATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCATAATGTGAAC
1 AAAATATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCACAATGTGAAC
23438323 CTAATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGTTCAA
66 CTAATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGTTCAA
23438388 TTTGAATATAAAATTATAAGAAATAGATATTTATTAGATATTTTAAT
131 TTTGAATATAAAATTATAAGAAATAGATATTTATTAGATATTTTAAT
* * * * *
23438435 AAAATCA--ATAAAAAAATC-AT------ATTA-AATGAATTTAAATGAGCTTTCACAATGTGAA
1 AAAAT-ATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCACAATGTGAA
* *
23438490 CCTAATTGGATTTGACTTA-TCAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGATTCA
65 CCTAATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGTTCA
23438554 ATTTGAATATAAAATTATAAGAAATAGATATTTATTAGATAT
130 ATTTGAATATAAAATTATAAGAAATAGATATTTATTAGATAT
23438596 GAAATAATCC
Statistics
Matches: 325, Mismatches: 12, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
167 85 0.26
168 47 0.14
169 3 0.01
175 2 0.01
176 9 0.03
177 141 0.43
178 1 0.00
179 1 0.00
181 36 0.11
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (177 bp):
AAAATATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCACAATGTGAAC
CTAATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGTTCAA
TTTGAATATAAAATTATAAGAAATAGATATTTATTAGATATTTTAAT
Found at i:23438557 original size:167 final size:164
Alignment explanation
Indices: 23438261--23438595 Score: 600
Period size: 167 Copynumber: 2.0 Consensus size: 164
23438251 TTTTAATAAA
*
23438261 ATATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCATAATGTGAACCTA
1 ATATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCACAATGTGAACCTA
*
23438326 ATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGGTTCAATTT
66 ATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGATTCAATTT
23438391 GAATATAAAATTATAAGAAATAGATATTTATTAG
131 GAATATAAAATTATAAGAAATAGATATTTATTAG
23438425 ATATTTTAATAAAATCAATAAAAAAATCATATTAAATGAATTTAAATGAGCTTTCACAATGTGAA
1 ATATTTTAATAAAATCAATAAAAAAATCATATT--A--AATTTAAATGAGCTTTCACAATGTGAA
*
23438490 CCTAATTGGATTTGACTTA-TCAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGATTCA
62 CCTAATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGATTCA
23438554 ATTTGAATATAAAATTATAAGAAATAGATATTTATTAG
127 ATTTGAATATAAAATTATAAGAAATAGATATTTATTAG
23438592 ATAT
1 ATAT
23438596 GAAATAATCC
Statistics
Matches: 164, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
164 33 0.20
166 1 0.01
167 85 0.52
168 45 0.27
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (164 bp):
ATATTTTAATAAAATCAATAAAAAAATCATATTAAATTTAAATGAGCTTTCACAATGTGAACCTA
ATTGGATTTGACTTATTAAGTATTTAAGTTAAAATCAATTGACAATAAATTAAGAGATTCAATTT
GAATATAAAATTATAAGAAATAGATATTTATTAG
Found at i:23444305 original size:57 final size:57
Alignment explanation
Indices: 23444217--23444330 Score: 228
Period size: 57 Copynumber: 2.0 Consensus size: 57
23444207 GCTTTATCTA
23444217 CCAAACTTTAATGGGTTTTTTGAATTTATTGTGAACTAACAAACTCTTTTGAAAATT
1 CCAAACTTTAATGGGTTTTTTGAATTTATTGTGAACTAACAAACTCTTTTGAAAATT
23444274 CCAAACTTTAATGGGTTTTTTGAATTTATTGTGAACTAACAAACTCTTTTGAAAATT
1 CCAAACTTTAATGGGTTTTTTGAATTTATTGTGAACTAACAAACTCTTTTGAAAATT
23444331 TGGGTATTGG
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (57 bp):
CCAAACTTTAATGGGTTTTTTGAATTTATTGTGAACTAACAAACTCTTTTGAAAATT
Found at i:23445728 original size:26 final size:26
Alignment explanation
Indices: 23445679--23445729 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
23445669 AATTTTATAA
* *
23445679 AATTTTTTTTAAAATATATTAAAATT
1 AATTTTTTTAAAAATATATAAAAATT
23445705 AATTTTTTTAAAAAT-TCATAAAAAT
1 AATTTTTTTAAAAATAT-ATAAAAAT
23445730 CAATATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
AATTTTTTTAAAAATATATAAAAATT
Found at i:23446888 original size:22 final size:22
Alignment explanation
Indices: 23446860--23446901 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
23446850 TTAACAGGGT
23446860 GGTTTATAGAACTGA-TTATTAA
1 GGTTTAT-GAACTGAGTTATTAA
*
23446882 GGTTTATGGACTGAGTTATT
1 GGTTTATGAACTGAGTTATT
23446902 GCTTATTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.29, C:0.05, G:0.24, T:0.43
Consensus pattern (22 bp):
GGTTTATGAACTGAGTTATTAA
Found at i:23456324 original size:21 final size:20
Alignment explanation
Indices: 23456286--23456325 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
23456276 ATATAATGTA
23456286 CAGTAAAGTTAGAAAACTTT
1 CAGTAAAGTTAGAAAACTTT
23456306 CAGTACAAGATTA-AAAACTT
1 CAGTA-AAG-TTAGAAAACTT
23456326 GTCTCACTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.28
21 10 0.56
22 3 0.17
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (20 bp):
CAGTAAAGTTAGAAAACTTT
Found at i:23463041 original size:17 final size:17
Alignment explanation
Indices: 23463021--23463063 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
23463011 AACATTAAAG
23463021 AAATTAATAAAACAAAA
1 AAATTAATAAAACAAAA
* * *
23463038 AAATTTATAATATAAAA
1 AAATTAATAAAACAAAA
23463055 AAATATAAT
1 AAAT-TAAT
23463064 TTTATACGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 18 0.86
18 3 0.14
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (17 bp):
AAATTAATAAAACAAAA
Found at i:23463085 original size:2 final size:2
Alignment explanation
Indices: 23463078--23463107 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
23463068 TACGTTGTAA
23463078 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23463108 TAGATATCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23474074 original size:29 final size:29
Alignment explanation
Indices: 23474030--23474087 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
23474020 CCATGTGTGG
23474030 TAGAAGATGTTAGCATACCAACCCACCTT
1 TAGAAGATGTTAGCATACCAACCCACCTT
*
23474059 TAGAAGATGTTGGCATACCAACCCACCTT
1 TAGAAGATGTTAGCATACCAACCCACCTT
23474088 CATAAATGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.24
Consensus pattern (29 bp):
TAGAAGATGTTAGCATACCAACCCACCTT
Found at i:23475038 original size:2 final size:2
Alignment explanation
Indices: 23475031--23475060 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
23475021 TTTCTTTCTT
23475031 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
23475061 ACAAAAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:23475218 original size:19 final size:20
Alignment explanation
Indices: 23475180--23475218 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
23475170 TAAGACGGGT
*
23475180 TTTCCTTTTTATGATTAAAAG
1 TTTCCTTGTTAT-ATTAAAAG
23475201 TTTCCTTGTTAT-TTAAAA
1 TTTCCTTGTTATATTAAAA
23475219 AAAAAAGATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
21 11 0.65
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.54
Consensus pattern (20 bp):
TTTCCTTGTTATATTAAAAG
Found at i:23478041 original size:54 final size:54
Alignment explanation
Indices: 23477954--23478061 Score: 171
Period size: 54 Copynumber: 2.0 Consensus size: 54
23477944 CTGATATGTG
* *
23477954 TTAATCAAACAGTGTTAACCATTTTATCACGAATATGTTTCCTATTAAGATTGC
1 TTAAGCAAACAATGTTAACCATTTTATCACGAATATGTTTCCTATTAAGATTGC
* * *
23478008 TTAAGCAAACAATGTTAACCATTTTCTCTCGAATATGTTTCCTTTTAAGATTGC
1 TTAAGCAAACAATGTTAACCATTTTATCACGAATATGTTTCCTATTAAGATTGC
23478062 ATCTTTATTA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.31, C:0.18, G:0.11, T:0.40
Consensus pattern (54 bp):
TTAAGCAAACAATGTTAACCATTTTATCACGAATATGTTTCCTATTAAGATTGC
Found at i:23484484 original size:14 final size:14
Alignment explanation
Indices: 23484465--23484492 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23484455 GATGACCATG
23484465 CTAAAACTCTAAAA
1 CTAAAACTCTAAAA
23484479 CTAAAACTCTAAAA
1 CTAAAACTCTAAAA
23484493 ACACAAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.21, G:0.00, T:0.21
Consensus pattern (14 bp):
CTAAAACTCTAAAA
Found at i:23491480 original size:1 final size:1
Alignment explanation
Indices: 23491438--23491463 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
23491428 AAAATATCCC
23491438 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
23491464 GAAGATCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:23493514 original size:2 final size:2
Alignment explanation
Indices: 23493507--23493534 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
23493497 TTTTAAGTAA
23493507 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
23493535 TTGTGTTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:23497034 original size:25 final size:25
Alignment explanation
Indices: 23497000--23497104 Score: 93
Period size: 25 Copynumber: 4.2 Consensus size: 25
23496990 ACCGACCCCT
** *
23497000 ATATAAAGAGCATGCTTAATCAGCC
1 ATATAAAGAGCATAATAAATCAGCC
23497025 ATATAAAGAGCATAATAAATCAGCC
1 ATATAAAGAGCATAATAAATCAGCC
** * **
23497050 GCATAAAGAGCATAATTAATCAAAC
1 ATATAAAGAGCATAATAAATCAGCC
* * ** *
23497075 ATATTAAGCGCATGCTAAATCATCC
1 ATATAAAGAGCATAATAAATCAGCC
23497100 ATATA
1 ATATA
23497105 CGAGTAAGAA
Statistics
Matches: 62, Mismatches: 18, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
25 62 1.00
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (25 bp):
ATATAAAGAGCATAATAAATCAGCC
Found at i:23497078 original size:50 final size:50
Alignment explanation
Indices: 23497002--23497096 Score: 118
Period size: 50 Copynumber: 1.9 Consensus size: 50
23496992 CGACCCCTAT
** **
23497002 ATAAAGAGCATGCTTAATCAGCCATATAAAGAGCATAATAAATCAGCCGC
1 ATAAAGAGCATAATTAATCAAACATATAAAGAGCATAATAAATCAGCCGC
* * **
23497052 ATAAAGAGCATAATTAATCAAACATATTAAGCGCATGCTAAATCA
1 ATAAAGAGCATAATTAATCAAACATATAAAGAGCATAATAAATCA
23497097 TCCATATACG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 37 1.00
ACGTcount: A:0.46, C:0.18, G:0.14, T:0.22
Consensus pattern (50 bp):
ATAAAGAGCATAATTAATCAAACATATAAAGAGCATAATAAATCAGCCGC
Found at i:23502967 original size:15 final size:15
Alignment explanation
Indices: 23502949--23502990 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
23502939 AATATTATTT
23502949 TTTAAAATATAAATA
1 TTTAAAATATAAATA
*
23502964 TTTAAATATATAATTA
1 TTTAAA-ATATAAATA
*
23502980 TATAAAATATA
1 TTTAAAATATA
23502991 TATAAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
TTTAAAATATAAATA
Done.