Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 124 of 133
Found at i:23941982 original size:15 final size:17
Alignment explanation
Indices: 23941956--23941987 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
23941946 ATAAATTGAA
23941956 GAAAATAATTTT-TAAT
1 GAAAATAATTTTATAAT
23941972 GAAAA-AATTTTATAAT
1 GAAAATAATTTTATAAT
23941988 TTTTGAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (17 bp):
GAAAATAATTTTATAAT
Found at i:23945568 original size:14 final size:14
Alignment explanation
Indices: 23945549--23945576 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23945539 CCACCCTGTT
23945549 CTGATCCTGCCATA
1 CTGATCCTGCCATA
23945563 CTGATCCTGCCATA
1 CTGATCCTGCCATA
23945577 AGAAACAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (14 bp):
CTGATCCTGCCATA
Found at i:23949874 original size:14 final size:14
Alignment explanation
Indices: 23949857--23949904 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
23949847 GCATGTCTAA
23949857 TTTAATTATTTACT
1 TTTAATTATTTACT
* *
23949871 TTTAATATGTTTAGT
1 TTTAAT-TATTTACT
*
23949886 TTT-ATCATTTACT
1 TTTAATTATTTACT
23949899 TTTAAT
1 TTTAAT
23949905 AAAAAAATAT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
13 8 0.30
14 10 0.37
15 9 0.33
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.62
Consensus pattern (14 bp):
TTTAATTATTTACT
Found at i:23953157 original size:22 final size:23
Alignment explanation
Indices: 23953108--23953159 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
23953098 AATTTAGAAA
23953108 AAAATAACAATCATTTATATATC
1 AAAATAACAATCATTTATATATC
* * *
23953131 AAAATAATAATTATTTTTAT-TC
1 AAAATAACAATCATTTATATATC
23953153 AAAATAA
1 AAAATAA
23953160 AGTTTAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 9 0.35
23 17 0.65
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (23 bp):
AAAATAACAATCATTTATATATC
Found at i:23962693 original size:15 final size:15
Alignment explanation
Indices: 23962673--23962703 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
23962663 CAAGTACTTC
23962673 GGTGGTTGAATTGGG
1 GGTGGTTGAATTGGG
23962688 GGTGGTTGAATTGGG
1 GGTGGTTGAATTGGG
23962703 G
1 G
23962704 TCAACGTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.00, G:0.55, T:0.32
Consensus pattern (15 bp):
GGTGGTTGAATTGGG
Found at i:23967824 original size:13 final size:13
Alignment explanation
Indices: 23967806--23967830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23967796 AGAGATTTTT
23967806 CTTGCTTTTTTCC
1 CTTGCTTTTTTCC
23967819 CTTGCTTTTTTC
1 CTTGCTTTTTTC
23967831 AATAAAATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.64
Consensus pattern (13 bp):
CTTGCTTTTTTCC
Found at i:23975213 original size:26 final size:25
Alignment explanation
Indices: 23975184--23975270 Score: 69
Period size: 27 Copynumber: 3.5 Consensus size: 25
23975174 ATTTTGATTT
23975184 AAAATTTATATAATTTTATATTATAAA
1 AAAATTT-TATAATTTTATATTAT-AA
* *
23975211 AAATATTTTATAAATTTAAATT-T--
1 AAA-ATTTTATAATTTTATATTATAA
23975234 -AAATTTT-T-ATTTATATATTATAA
1 AAAATTTTATAATTT-TATATTATAA
23975257 TAAAATTTTATAAT
1 -AAAATTTTATAAT
23975271 ATTTCGGGAA
Statistics
Matches: 47, Mismatches: 4, Indels: 18
0.68 0.06 0.26
Matches are distributed among these distances:
19 3 0.06
20 6 0.13
21 6 0.13
22 2 0.04
25 7 0.15
26 2 0.04
27 17 0.36
28 4 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
AAAATTTTATAATTTTATATTATAA
Found at i:23980571 original size:30 final size:30
Alignment explanation
Indices: 23980536--23980601 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
23980526 TGGACTTGGT
23980536 GGCTTGTAAGGGGGTG-TAGGAGCTGGTGGA
1 GGCTTGTAAGGGGGTGCT-GGAGCTGGTGGA
* *
23980566 GGCTTGTAAGGGGGTGCTGGAGCTGTTGGT
1 GGCTTGTAAGGGGGTGCTGGAGCTGGTGGA
23980596 GGCTTG
1 GGCTTG
23980602 GTTGGAGGCA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.12, C:0.09, G:0.52, T:0.27
Consensus pattern (30 bp):
GGCTTGTAAGGGGGTGCTGGAGCTGGTGGA
Found at i:23980821 original size:21 final size:21
Alignment explanation
Indices: 23980797--23980918 Score: 64
Period size: 21 Copynumber: 5.2 Consensus size: 21
23980787 AGGAGTTGGG
23980797 GGCTTATAGGGGGGAGAGGGA
1 GGCTTATAGGGGGGAGAGGGA
** * *
23980818 GGCTTGACCGGAGGTGCAGGAGTTGGG
1 GGCTT-ATAGG-GG-GGA-GAG--GGA
23980845 GGCTTATAGGGGGGAGAGGGA
1 GGCTTATAGGGGGGAGAGGGA
** * *
23980866 GGCTTGACCGGAGGTGCAGGAGTTGGG
1 GGCTT-ATAGG-GG-GGA-GAG--GGA
23980893 GGCTTATAGGGGGGAGAGGGA
1 GGCTTATAGGGGGGAGAGGGA
23980914 GGCTT
1 GGCTT
23980919 GACCGGAGGT
Statistics
Matches: 73, Mismatches: 16, Indels: 24
0.65 0.14 0.21
Matches are distributed among these distances:
21 19 0.26
22 6 0.08
23 10 0.14
24 8 0.11
25 10 0.14
26 6 0.08
27 14 0.19
ACGTcount: A:0.19, C:0.10, G:0.54, T:0.17
Consensus pattern (21 bp):
GGCTTATAGGGGGGAGAGGGA
Found at i:23981035 original size:48 final size:48
Alignment explanation
Indices: 23980644--23981008 Score: 534
Period size: 48 Copynumber: 7.6 Consensus size: 48
23980634 TGGCGGTGAG
* * * ** *
23980644 GGAGTTGGGGGTTTATATGGGGGAGTAGGG-GCCTGGATTGGTGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGT-GGGAGGCTTGACCGGAGGTGCA
* * * *
23980692 GGAGTTGGGGGTTTATATGGGGGAGTAGGAGGCTTGACTGGGGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
*
23980740 GGAGTTGGCGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
* *
23980788 GGAGTTGGGGGCTTATAGGGGGGAGAGGGAGGCTTGACCGGAGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
* *
23980836 GGAGTTGGGGGCTTATAGGGGGGAGAGGGAGGCTTGACCGGAGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
* *
23980884 GGAGTTGGGGGCTTATAGGGGGGAGAGGGAGGCTTGACCGGAGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
* * *
23980932 GGAGTCGGGGGTTTATAGGGGGGAGTGGAAGGCTTAACCGGAGGTGCA
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
23980980 GGAGTTGGGGGTTTATAGGGGGGAGTGGG
1 GGAGTTGGGGGTTTATAGGGGGGAGTGGG
23981009 GGCCGTGACT
Statistics
Matches: 296, Mismatches: 20, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 2 0.01
48 294 0.99
ACGTcount: A:0.18, C:0.08, G:0.53, T:0.21
Consensus pattern (48 bp):
GGAGTTGGGGGTTTATAGGGGGGAGTGGGAGGCTTGACCGGAGGTGCA
Found at i:23997387 original size:14 final size:13
Alignment explanation
Indices: 23997368--23997401 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
23997358 AACTTGATAA
23997368 TATATATATAACGT
1 TATATATATAA-GT
23997382 TATATATATAAGT
1 TATATATATAAGT
23997395 TGATATA
1 T-ATATA
23997402 ATTAACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 3 0.16
14 16 0.84
ACGTcount: A:0.44, C:0.03, G:0.09, T:0.44
Consensus pattern (13 bp):
TATATATATAAGT
Found at i:23997432 original size:30 final size:30
Alignment explanation
Indices: 23997397--23997453 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
23997387 ATATAAGTTG
23997397 ATATAATTAACATAA-TTA-AAATTTAAATTA
1 ATATAA-T-ACATAATTTAGAAATTTAAATTA
23997427 ATATAATACATAATTTAGAAATTTAAA
1 ATATAATACATAATTTAGAAATTTAAA
23997454 AACAAATTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
28 6 0.24
29 4 0.16
30 15 0.60
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (30 bp):
ATATAATACATAATTTAGAAATTTAAATTA
Found at i:23997979 original size:12 final size:12
Alignment explanation
Indices: 23997962--23997986 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23997952 ATTTTGAATG
23997962 TGTTAGGCAGAT
1 TGTTAGGCAGAT
23997974 TGTTAGGCAGAT
1 TGTTAGGCAGAT
23997986 T
1 T
23997987 AGAAGAATAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.32, T:0.36
Consensus pattern (12 bp):
TGTTAGGCAGAT
Found at i:24005461 original size:21 final size:21
Alignment explanation
Indices: 24005415--24005462 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
24005405 ATAACACGTC
**
24005415 ATTATTTTATTTTATAAATTT
1 ATTATTTTATTTTATAAATAA
*
24005436 TTTATTTT-TTTTATAAATAAA
1 ATTATTTTATTTTATAAAT-AA
24005457 ATTATT
1 ATTATT
24005463 CAGATTTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 10 0.45
21 12 0.55
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTATTTTATTTTATAAATAA
Found at i:24005819 original size:86 final size:87
Alignment explanation
Indices: 24005739--24005896 Score: 211
Period size: 89 Copynumber: 1.9 Consensus size: 87
24005729 TTTTTTTAAA
24005739 AAATAATTACAACTATT-ATAT-ATAT-AATTTAAACTTATCTTGATT-A-ATA-ATTTTTTTAT
1 AAATAATTACAA-TATTCATATCATATCAATTTAAACTTATCTTGATTAATATATATTTTTTTAT
*
24005798 ATTTGAAGTTGTCAAATTTTTTT
65 ATTTAAAGTTGTCAAATTTTTTT
* * *
24005821 AAATAATTACAATTTTCATATGCATATGCATTTTGAACTTATCTTGATTAATATATATTTTTTTA
1 AAATAATTACAATATTCATAT-CATAT-CAATTTAAACTTATCTTGATTAATATATATTTTTTTA
24005886 TATTTAAAGTT
64 TATTTAAAGTT
24005897 ATTAAAGATT
Statistics
Matches: 64, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
81 3 0.05
82 16 0.25
84 4 0.06
86 18 0.28
87 1 0.02
88 3 0.05
89 19 0.30
ACGTcount: A:0.37, C:0.07, G:0.06, T:0.51
Consensus pattern (87 bp):
AAATAATTACAATATTCATATCATATCAATTTAAACTTATCTTGATTAATATATATTTTTTTATA
TTTAAAGTTGTCAAATTTTTTT
Found at i:24014544 original size:21 final size:21
Alignment explanation
Indices: 24014520--24014573 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
24014510 ACGGCCGCCG
*
24014520 CCCAAAACGACGCCGTTGCTC
1 CCCAAAACGACGCCGTTGCCC
24014541 CCCAAAACGACGCCGTTGCCC
1 CCCAAAACGACGCCGTTGCCC
24014562 CCCAAAACGACG
1 CCCAAAACGACG
24014574 TCTTTGTTGC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.28, C:0.44, G:0.19, T:0.09
Consensus pattern (21 bp):
CCCAAAACGACGCCGTTGCCC
Found at i:24018057 original size:19 final size:21
Alignment explanation
Indices: 24018005--24018057 Score: 51
Period size: 19 Copynumber: 2.7 Consensus size: 21
24017995 GCTTATAATC
*
24018005 TTTATGTTTAGTTA-GTCTAT
1 TTTATATTTAGTTAGGTCTAT
* *
24018025 TTTAGA-TTATTTAGGTC-AT
1 TTTATATTTAGTTAGGTCTAT
24018044 TTTATATTTA-TTAG
1 TTTATATTTAGTTAG
24018058 TATTTTACAA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
19 17 0.63
20 10 0.37
ACGTcount: A:0.25, C:0.04, G:0.13, T:0.58
Consensus pattern (21 bp):
TTTATATTTAGTTAGGTCTAT
Found at i:24039231 original size:51 final size:52
Alignment explanation
Indices: 24039153--24039251 Score: 146
Period size: 51 Copynumber: 1.9 Consensus size: 52
24039143 GATACATCAA
* *
24039153 GATAATCTAAGGTTTTGCTATGATATATATGTAAAGATATAAACCTAATAGG
1 GATAATCTAAGGTTCTACTATGATATATATGTAAAGATATAAACCTAATAGG
* * *
24039205 GATAATCTAA-GTTCTACTATGATATATGTGTAGAGATCTAAACCTAA
1 GATAATCTAAGGTTCTACTATGATATATATGTAAAGATATAAACCTAA
24039252 ACTTGTGAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
51 32 0.76
52 10 0.24
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (52 bp):
GATAATCTAAGGTTCTACTATGATATATATGTAAAGATATAAACCTAATAGG
Found at i:24040025 original size:73 final size:73
Alignment explanation
Indices: 24039906--24040053 Score: 269
Period size: 73 Copynumber: 2.0 Consensus size: 73
24039896 TGTTAATATT
*
24039906 TTAACTCTAATTTCAAATCTTTTCACAATCAAATTTGTGAGATAACATTATTGAAACAAAAACTA
1 TTAACTCTAATTTCAAATCTTTTCACAATCAAATTTATGAGATAACATTATTGAAACAAAAACTA
24039971 ATAGCAAC
66 ATAGCAAC
* *
24039979 TTAACTCTAATTTCAAATCTTTTCACAATCAAATTTATGAGATAACATTATTGAAGCAAAAACTC
1 TTAACTCTAATTTCAAATCTTTTCACAATCAAATTTATGAGATAACATTATTGAAACAAAAACTA
24040044 ATAGCAAC
66 ATAGCAAC
24040052 TT
1 TT
24040054 CACAATAGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.34
Consensus pattern (73 bp):
TTAACTCTAATTTCAAATCTTTTCACAATCAAATTTATGAGATAACATTATTGAAACAAAAACTA
ATAGCAAC
Found at i:24042485 original size:28 final size:27
Alignment explanation
Indices: 24042438--24042527 Score: 113
Period size: 24 Copynumber: 3.6 Consensus size: 27
24042428 TTTGCATTTT
*
24042438 TATTTTTATTATTTATTAA-T-ATATA
1 TATTTTTATTATTTATCAATTAATATA
24042463 TA-TTTTATTATTTATCAATT-A-ATA
1 TATTTTTATTATTTATCAATTAATATA
*
24042487 T-TTTTTATTATTTATCTATTAATATA
1 TATTTTTATTATTTATCAATTAATATA
24042513 TATTTTTATT-TTTAT
1 TATTTTTATTATTTAT
24042528 TTATTAATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 9
0.84 0.03 0.13
Matches are distributed among these distances:
24 36 0.62
25 5 0.09
26 9 0.16
27 8 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (27 bp):
TATTTTTATTATTTATCAATTAATATA
Found at i:24042527 original size:33 final size:35
Alignment explanation
Indices: 24042488--24042571 Score: 105
Period size: 37 Copynumber: 2.3 Consensus size: 35
24042478 CAATTAATAT
* *
24042488 TTTTTATTATTTATCTATTAATATATATTTTTATTT
1 TTTTTATTATTTATCTATTAATATATATATTT-TTA
*
24042524 TTATTTATTAATTATCTATTAATATATATATTTTTA
1 TT-TTTATTATTTATCTATTAATATATATATTTTTA
*
24042560 TCTATTATTATT
1 T-TTTTATTATT
24042572 ATTTTTTGAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
36 12 0.29
37 29 0.71
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (35 bp):
TTTTTATTATTTATCTATTAATATATATATTTTTA
Found at i:24042544 original size:48 final size:52
Alignment explanation
Indices: 24042446--24042544 Score: 125
Period size: 52 Copynumber: 2.0 Consensus size: 52
24042436 TTTATTTTTA
* * *
24042446 TTATTTATTAATATATATATTTTATTATTTATCAATTAATATTTTTTATTAT
1 TTATCTATTAATATATATATTTTATTATTTATCAATTAATATTATCTATTAT
**
24042498 TTATCTATTAATATATAT-TTTTATT-TTTATTTATT-A-ATTATCTATTA
1 TTATCTATTAATATATATATTTTATTATTTATCAATTAATATTATCTATTA
24042545 ATATATATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 9 0.21
49 1 0.02
50 8 0.19
51 7 0.17
52 17 0.40
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (52 bp):
TTATCTATTAATATATATATTTTATTATTTATCAATTAATATTATCTATTAT
Found at i:24043849 original size:30 final size:29
Alignment explanation
Indices: 24043813--24043913 Score: 122
Period size: 30 Copynumber: 3.6 Consensus size: 29
24043803 TAGATAATTA
*
24043813 ATAAATAAAAAATAAAAAATATATTAATAG
1 ATAAAT-AATAATAAAAAATATATTAATAG
24043843 AT--A-AATAAT-AAAAA-ATATTAATAG
1 ATAAATAATAATAAAAAATATATTAATAG
* *
24043867 ATAAATAATAATAAAAATATATATAAATAA
1 ATAAATAATAATAAAAA-ATATATTAATAG
24043897 ATAAATAATAATAAAAA
1 ATAAATAATAATAAAAA
24043914 TAAAAATACA
Statistics
Matches: 62, Mismatches: 3, Indels: 12
0.81 0.04 0.16
Matches are distributed among these distances:
24 12 0.19
25 5 0.08
26 6 0.10
27 6 0.10
28 5 0.08
29 1 0.02
30 27 0.44
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (29 bp):
ATAAATAATAATAAAAAATATATTAATAG
Found at i:24043852 original size:37 final size:40
Alignment explanation
Indices: 24043779--24043854 Score: 113
Period size: 37 Copynumber: 2.0 Consensus size: 40
24043769 GAAAAAGTAA
* *
24043779 AAAAAATAGATAAATATAATTTAATAGATAATTAATAAAT
1 AAAAAATAGAAAAATATAATTTAATAGATAAATAATAAAT
24043819 AAAAAATA-AAAAATAT-A-TTAATAGATAAATAATAAA
1 AAAAAATAGAAAAATATAATTTAATAGATAAATAATAAA
24043855 AAATATTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
37 18 0.53
38 1 0.03
39 7 0.21
40 8 0.24
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (40 bp):
AAAAAATAGAAAAATATAATTTAATAGATAAATAATAAAT
Found at i:24043863 original size:50 final size:55
Alignment explanation
Indices: 24043809--24043912 Score: 146
Period size: 54 Copynumber: 2.0 Consensus size: 55
24043799 TTAATAGATA
* *
24043809 ATTAATAAAT-AA-AA-AATAAAAA-ATATATTAATAGATAAATAATAA-AAAAT
1 ATTAATAAATAAATAATAATAAAAATATATATAAATAAATAAATAATAATAAAAT
*
24043859 ATTAATAGATAAATAATAATAAAAATATATATAAATAAATAAATAATAATAAAA
1 ATTAATAAATAAATAATAATAAAAATATATATAAATAAATAAATAATAATAAAA
24043913 ATAAAAATAC
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
50 9 0.20
51 2 0.04
52 2 0.04
53 8 0.17
54 21 0.46
55 4 0.09
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (55 bp):
ATTAATAAATAAATAATAATAAAAATATATATAAATAAATAAATAATAATAAAAT
Found at i:24043892 original size:12 final size:12
Alignment explanation
Indices: 24043813--24043926 Score: 60
Period size: 12 Copynumber: 9.5 Consensus size: 12
24043803 TAGATAATTA
24043813 ATAAATAAAAA-
1 ATAAATAAAAAT
*
24043824 ATAAA-AAATAT
1 ATAAATAAAAAT
* *
24043835 ATTAATAGATAA-
1 ATAAATA-AAAAT
24043847 AT-AATAAAAAAT
1 ATAAAT-AAAAAT
*
24043859 ATTAATAGATAAAT
1 ATAAATA-A-AAAT
24043873 A-ATAATAAAAAT
1 ATA-AATAAAAAT
*
24043885 ATATATAAATAA-
1 ATAAATAAA-AAT
*
24043897 ATAAATAATAAT
1 ATAAATAAAAAT
*
24043909 AAAAATAAAAAT
1 ATAAATAAAAAT
*
24043921 ACAAAT
1 ATAAAT
24043927 GGGCTTACCC
Statistics
Matches: 79, Mismatches: 12, Indels: 23
0.69 0.11 0.20
Matches are distributed among these distances:
10 4 0.05
11 17 0.22
12 39 0.49
13 10 0.13
14 9 0.11
ACGTcount: A:0.70, C:0.01, G:0.02, T:0.27
Consensus pattern (12 bp):
ATAAATAAAAAT
Found at i:24043915 original size:30 final size:28
Alignment explanation
Indices: 24043801--24043913 Score: 117
Period size: 26 Copynumber: 4.0 Consensus size: 28
24043791 AATATAATTT
* * *
24043801 AATAGATAATTAATAAATAAAAAATAAAA
1 AATATATAATAAATAAAT-AATAATAAAA
*
24043830 AATATAT--T-AATAGATAAATAATAAAA
1 AATATATAATAAATAAAT-AATAATAAAA
*
24043856 AATAT-TAATAGATAAATAATAATAAAA
1 AATATATAATAAATAAATAATAATAAAA
24043883 ATATATATAAATAAATAAATAATAATAAAA
1 A-ATATAT-AATAAATAAATAATAATAAAA
24043913 A
1 A
24043914 TAAAAATACA
Statistics
Matches: 72, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
25 1 0.01
26 21 0.29
27 13 0.18
28 9 0.12
29 7 0.10
30 21 0.29
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (28 bp):
AATATATAATAAATAAATAATAATAAAA
Found at i:24043916 original size:24 final size:24
Alignment explanation
Indices: 24043812--24043917 Score: 76
Period size: 24 Copynumber: 4.4 Consensus size: 24
24043802 ATAGATAATT
24043812 AATAAATAAA-AAATAA-AA-AATA
1 AATAAATAAATAAATAATAATAA-A
* * * *
24043834 TATTAATAGATAAATAATAAAAAA
1 AATAAATAAATAAATAATAATAAA
* * *
24043858 TATTAATAGATAAATAATAATAAA
1 AATAAATAAATAAATAATAATAAA
*
24043882 AATATATATAAATAAATAAATAATAAT
1 AATA-A-ATAAATAAAT-AATAATAAA
24043909 AA-AAATAAA
1 AATAAATAAA
24043918 AATACAAATG
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
22 7 0.10
23 6 0.09
24 33 0.47
25 4 0.06
26 10 0.14
27 10 0.14
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (24 bp):
AATAAATAAATAAATAATAATAAA
Found at i:24044261 original size:44 final size:44
Alignment explanation
Indices: 24044112--24044371 Score: 224
Period size: 44 Copynumber: 5.9 Consensus size: 44
24044102 TTTTGATCAA
* * * *
24044112 AGCTCTTCTAAGCAGAGG-TTCAAC-ACCTTTGAGAAACATAAACAA
1 AGCTCCTCTAAACAGAGGCTT-AACGA-CTTTGA-AAAAATAAACAT
* * * * **
24044157 AGCTCCTATAAGCAGAGACTCAACGACTTAAAAAAAATAAACAT
1 AGCTCCTCTAAACAGAGGCTTAACGACTTTGAAAAAATAAACAT
* * **
24044201 AGCTCCTATAATCAGAGGCTTAACGACTTAAAAAAAATAAACAT
1 AGCTCCTCTAAACAGAGGCTTAACGACTTTGAAAAAATAAACAT
* * * * * *
24044245 AGCTCATCTAAACAGAGG-TTCAATGACTTTGGAGAAATAAATAA
1 AGCTCCTCTAAACAGAGGCTT-AACGACTTTGAAAAAATAAACAT
** *
24044289 AGCTATTCTAAACAGAGGCTTAACGATTTTGAAAAAAT-AA-AT
1 AGCTCCTCTAAACAGAGGCTTAACGACTTTGAAAAAATAAACAT
* *
24044331 TGCTCCTCTAAACAGAGGCTTAACAACTTTGAAAAAATAAA
1 AGCTCCTCTAAACAGAGGCTTAACGACTTTGAAAAAATAAA
24044372 TTGCTTTTCT
Statistics
Matches: 177, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
42 34 0.19
43 6 0.03
44 111 0.63
45 24 0.14
46 2 0.01
ACGTcount: A:0.45, C:0.18, G:0.14, T:0.23
Consensus pattern (44 bp):
AGCTCCTCTAAACAGAGGCTTAACGACTTTGAAAAAATAAACAT
Found at i:24044399 original size:42 final size:42
Alignment explanation
Indices: 24044295--24044402 Score: 135
Period size: 42 Copynumber: 2.6 Consensus size: 42
24044285 ATAAAGCTAT
** * *
24044295 TCTAAACAGAGGCTTAACGATTTTGAAAAAATAAATTGCTCC
1 TCTAAACAGAGGCACAACAACTTTGAAAAAATAAATTGCTCC
** **
24044337 TCTAAACAGAGGCTTAACAACTTTGAAAAAATAAATTGCTTT
1 TCTAAACAGAGGCACAACAACTTTGAAAAAATAAATTGCTCC
*
24044379 TCTAAACAGAGGCACCACAACTTT
1 TCTAAACAGAGGCACAACAACTTT
24044403 TAAAGGTAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.28
Consensus pattern (42 bp):
TCTAAACAGAGGCACAACAACTTTGAAAAAATAAATTGCTCC
Found at i:24044444 original size:59 final size:59
Alignment explanation
Indices: 24044352--24044471 Score: 213
Period size: 59 Copynumber: 2.0 Consensus size: 59
24044342 ACAGAGGCTT
* **
24044352 AACAACTTTGAAAAAATAAATTGCTTTTCTAAACAGAGGCACCACAACTTTTAAAGGTA
1 AACAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACCACAACTTTTAAAGGTA
24044411 AACAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACCACAACTTTTAAAGGTA
1 AACAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACCACAACTTTTAAAGGTA
24044470 AA
1 AA
24044472 TTACTTCTCT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.25
Consensus pattern (59 bp):
AACAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACCACAACTTTTAAAGGTA
Found at i:24044526 original size:42 final size:42
Alignment explanation
Indices: 24044412--24044559 Score: 199
Period size: 41 Copynumber: 3.5 Consensus size: 42
24044402 TTAAAGGTAA
*
24044412 ACAACTTTGAAAAAATAAATTACTCCTCTAAACAGAGGCACC
1 ACAACTTTGAAAAAATAAATTACTCCTCTAAATAGAGGCACC
* ** *
24044454 ACAACTTT-TAAAGGTAAATTACTTCTCTAAATAGAGGCACC
1 ACAACTTTGAAAAAATAAATTACTCCTCTAAATAGAGGCACC
* *
24044495 ACAAATTTGAAAAAATAAATTGCTCCTCTAAATAGAGGCATCC
1 ACAACTTTGAAAAAATAAATTACTCCTCTAAATAGAGGCA-CC
24044538 ACAACTTTTGAAAAAAATAAAT
1 ACAAC-TTTG-AAAAAATAAAT
24044560 GCTCTTTGAC
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
41 35 0.39
42 34 0.38
43 6 0.07
44 4 0.04
45 11 0.12
ACGTcount: A:0.45, C:0.19, G:0.10, T:0.26
Consensus pattern (42 bp):
ACAACTTTGAAAAAATAAATTACTCCTCTAAATAGAGGCACC
Found at i:24046160 original size:113 final size:113
Alignment explanation
Indices: 24045969--24046186 Score: 346
Period size: 113 Copynumber: 1.9 Consensus size: 113
24045959 CTCATCAACT
* * * * *
24045969 TTTGCCTCAACTTTTTAGATGCCTTGATCTTCTTTATATTTGAACTGTTTATCCAACTTTTAGCT
1 TTTGCCTCAACTTTTTAGATGCCTAGATCTTCTATATATTTGAACTGTTCATCCAACTTTCAACT
* *
24046034 TAGAGATTTGTCTACCCAAATAGCCCTTTCGGGTTTTCAAAATCAAAA
66 CAGAGATTTGTCTACCCAAATAGCCCTTTCGGATTTTCAAAATCAAAA
* *
24046082 TTTGCCTTAGCTTTTTAGATGCCTAGATCTTCTATATATTTGAACTGTTCATCCAACTTTCAACT
1 TTTGCCTCAACTTTTTAGATGCCTAGATCTTCTATATATTTGAACTGTTCATCCAACTTTCAACT
*
24046147 CAGAGATTTGTCTACCCAAATAGCCCTTTTGGATTTTCAA
66 CAGAGATTTGTCTACCCAAATAGCCCTTTCGGATTTTCAA
24046187 TTTGGGTATT
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
113 95 1.00
ACGTcount: A:0.25, C:0.21, G:0.12, T:0.41
Consensus pattern (113 bp):
TTTGCCTCAACTTTTTAGATGCCTAGATCTTCTATATATTTGAACTGTTCATCCAACTTTCAACT
CAGAGATTTGTCTACCCAAATAGCCCTTTCGGATTTTCAAAATCAAAA
Found at i:24046229 original size:10 final size:10
Alignment explanation
Indices: 24046216--24046277 Score: 78
Period size: 10 Copynumber: 6.6 Consensus size: 10
24046206 CCTTTCATCT
24046216 TTTTTTTTCA
1 TTTTTTTTCA
24046226 TTTTTTTTCA
1 TTTTTTTTCA
*
24046236 TTTGTTTTC-
1 TTTTTTTTCA
*
24046245 --TTTTTTCC
1 TTTTTTTTCA
24046253 TTTTTTTTCA
1 TTTTTTTTCA
24046263 -TTTTTTTCA
1 TTTTTTTTCA
24046272 TTTTTT
1 TTTTTT
24046278 CACCCATTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
7 6 0.13
9 9 0.20
10 30 0.67
ACGTcount: A:0.06, C:0.11, G:0.02, T:0.81
Consensus pattern (10 bp):
TTTTTTTTCA
Found at i:24046231 original size:9 final size:9
Alignment explanation
Indices: 24046217--24046277 Score: 79
Period size: 9 Copynumber: 6.7 Consensus size: 9
24046207 CTTTCATCTT
24046217 TTTTTTTCA
1 TTTTTTTCA
24046226 TTTTTTTTCA
1 -TTTTTTTCA
24046236 TTTGTTTTC-
1 TTT-TTTTCA
* *
24046245 TTTTTTCCT
1 TTTTTTTCA
24046254 TTTTTTTCA
1 TTTTTTTCA
24046263 TTTTTTTCA
1 TTTTTTTCA
24046272 TTTTTT
1 TTTTTT
24046278 CACCCATTAT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
8 4 0.09
9 28 0.61
10 14 0.30
ACGTcount: A:0.07, C:0.11, G:0.02, T:0.80
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:24046248 original size:27 final size:27
Alignment explanation
Indices: 24046218--24046279 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
24046208 TTTCATCTTT
24046218 TTTTTTCATTTTTTTTCATTTGTTTTC-
1 TTTTTTCATTTTTTTTCATTT-TTTTCA
*
24046245 TTTTTTCCTTTTTTTTCATTTTTTTCA
1 TTTTTTCATTTTTTTTCATTTTTTTCA
24046272 TTTTTTCA
1 TTTTTTCA
24046280 CCCATTATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
26 5 0.16
27 27 0.84
ACGTcount: A:0.08, C:0.13, G:0.02, T:0.77
Consensus pattern (27 bp):
TTTTTTCATTTTTTTTCATTTTTTTCA
Found at i:24046250 original size:17 final size:18
Alignment explanation
Indices: 24046228--24046274 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
24046218 TTTTTTCATT
24046228 TTTTTTCATTTGTTTTC-
1 TTTTTTCATTTGTTTTCA
* *
24046245 TTTTTTCCTTTTTTTTCA
1 TTTTTTCATTTGTTTTCA
24046263 TTTTTTTCATTT
1 -TTTTTTCATTT
24046275 TTTCACCCAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 15 0.60
19 10 0.40
ACGTcount: A:0.06, C:0.13, G:0.02, T:0.79
Consensus pattern (18 bp):
TTTTTTCATTTGTTTTCA
Found at i:24050425 original size:58 final size:57
Alignment explanation
Indices: 24050353--24050665 Score: 278
Period size: 58 Copynumber: 5.4 Consensus size: 57
24050343 TACTTTCAAC
* *
24050353 TTTTCTTTAAAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATA
1 TTTTC-TTAAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATA
* * * *
24050411 CTTTTCTTAAAATTTTAATTTCAAGAAAAATTAATACTTTCAACTTTTCCTAAAAAATA
1 -TTTTCTTAAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCT-CAAAATA
* **
24050470 TTTTTTTTAGATAA-TTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTTTCAAAAATA
1 -TTTTCTTA-A-AATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATA
* * ** * * *
24050530 TATTTTTTAAAA-TTTATTTTTAAGGAAAACGGTTATTTTCAACCTTTCCT--AAAT-
1 T-TTTCTTAAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATA
* * * *
24050584 TTTTTTTAAAAAATTTTATTTTTAA-AGAAAATTGATATTTTTAACTTTTTCTCAAAAATA
1 TTTTCTT--AAAATTTTATTTTTAAGA-AAAATTGATACTTTCAACTTTTCCTC-AAAATA
24050644 TTATTCTTGAAAATTTTATTTT
1 TT-TTCTT-AAAATTTTATTTT
24050666 ATATTTTTTC
Statistics
Matches: 213, Mismatches: 27, Indels: 27
0.80 0.10 0.10
Matches are distributed among these distances:
53 6 0.03
54 1 0.00
55 8 0.04
56 30 0.14
58 76 0.36
59 24 0.11
60 62 0.29
61 6 0.03
ACGTcount: A:0.37, C:0.10, G:0.04, T:0.49
Consensus pattern (57 bp):
TTTTCTTAAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATA
Found at i:24050509 original size:118 final size:114
Alignment explanation
Indices: 24050361--24050661 Score: 322
Period size: 118 Copynumber: 2.6 Consensus size: 114
24050351 ACTTTTCTTT
* * *
24050361 AAAATTTTAATTTCAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATACTTTTCTTAAAATT
1 AAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTCTTAAAATT
** * *
24050425 TTAATTTCAAGAAAAATTAATACTTTCAACTTTTCCTAAAAAATATTTTTTTTAG
65 TTAATTTCAAGAAAAACGAATACTTTCAACCTTTCCT----AA-ATTTTTTTTAA
* * *
24050480 ATAA-TTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTTTCAAAAATATATTTTTTAAAA-T
1 AAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATAT-TTTCTTAAAATT
* * * ** *
24050543 TTATTTTTAAGGAAAACGGTTATTTTCAACCTTTCCTAAATTTTTTTTAA
65 TTAATTTCAAGAAAAACGAATACTTTCAACCTTTCCTAAATTTTTTTTAA
* *
24050593 AAAATTTTATTTTTAA-AGAAAATTGATATTTTTAACTTTTTCTCAAAAATATTATTCTTGAAAA
1 AAAATTTTATTTTTAAGA-AAAATTGATACTTTCAACTTTTTCTCAAAAATATT-TTCTT-AAAA
24050657 TTTTA
63 TTTTA
24050662 TTTTATATTT
Statistics
Matches: 154, Mismatches: 21, Indels: 17
0.80 0.11 0.09
Matches are distributed among these distances:
113 15 0.10
114 48 0.31
115 4 0.03
116 4 0.03
118 65 0.42
119 18 0.12
ACGTcount: A:0.39, C:0.10, G:0.04, T:0.47
Consensus pattern (114 bp):
AAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTTCTTAAAATTT
TAATTTCAAGAAAAACGAATACTTTCAACCTTTCCTAAATTTTTTTTAA
Found at i:24050753 original size:19 final size:19
Alignment explanation
Indices: 24050710--24050766 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
24050700 AAAAAATATT
24050710 CTAAAAAAATAAACAAACA
1 CTAAAAAAATAAACAAACA
24050729 CATAAAAAATACTAAA-AAA-A
1 C-TAAAAAA-A-TAAACAAACA
*
24050749 CTAAAACAAAAAAACAAA
1 CTAAAA-AAATAAACAAA
24050767 AAAAATCGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
18 3 0.09
19 10 0.31
20 11 0.34
21 4 0.12
22 4 0.12
ACGTcount: A:0.75, C:0.14, G:0.00, T:0.11
Consensus pattern (19 bp):
CTAAAAAAATAAACAAACA
Found at i:24050768 original size:32 final size:31
Alignment explanation
Indices: 24050699--24050769 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 31
24050689 TTTATTCATG
* *
24050699 CAAAAAATATTCTAAAAAAATAAACAAACACA
1 CAAAAAATA-TCTAAAAAAATAAACAAAAAAA
*
24050731 TAAAAAATA-CTAAAAAAACTAAAACAAAAAAA
1 CAAAAAATATCTAAAAAAA-T-AAACAAAAAAA
24050763 CAAAAAA
1 CAAAAAA
24050770 AATCGAAACG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 9 0.27
31 1 0.03
32 23 0.70
ACGTcount: A:0.75, C:0.13, G:0.00, T:0.13
Consensus pattern (31 bp):
CAAAAAATATCTAAAAAAATAAACAAAAAAA
Found at i:24051652 original size:4 final size:4
Alignment explanation
Indices: 24051622--24051742 Score: 51
Period size: 4 Copynumber: 30.5 Consensus size: 4
24051612 AAAAAATATT
* * * * *
24051622 AATA GATA ATTA AA-A AATAA AAAA AATA AATA ATATT AATA GATA AAT-
1 AATA AATA AATA AATA AAT-A AATA AATA AATA A-ATA AATA AATA AATA
* * *
24051670 AATA AA-A AATA TTAATA GATA AAT- AATA AATA TATATT AATT AATA
1 AATA AATA AATA --AATA AATA AATA AATA AATA -A-ATA AATA AATA
24051716 AATA AA-A TAAT- AAT- AAT- AATA AATA AA
1 AATA AATA -AATA AATA AATA AATA AATA AA
24051743 AATAAAAATG
Statistics
Matches: 90, Mismatches: 14, Indels: 26
0.69 0.11 0.20
Matches are distributed among these distances:
3 22 0.24
4 54 0.60
5 8 0.09
6 6 0.07
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (4 bp):
AATA
Found at i:24051656 original size:3 final size:3
Alignment explanation
Indices: 24051650--24051747 Score: 58
Period size: 3 Copynumber: 30.7 Consensus size: 3
24051640 AAAAAAAATA
* *
24051650 AAT AAT ATT AAT AGAT AAAT AAT AA- AA- AAT ATT AAT AGAT AAAT AAT
1 AAT AAT AAT AAT A-AT -AAT AAT AAT AAT AAT AAT AAT A-AT -AAT AAT
* *
24051697 AAAT ATAT ATT AATT AAT AAAT AA- AAT AAT AAT AAT AAT AAAT AAA
1 -AAT A-AT AAT AA-T AAT -AAT AAT AAT AAT AAT AAT AAT -AAT AAT
24051743 AAT AA
1 AAT AA
24051748 AAATGCAAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 22
0.72 0.08 0.21
Matches are distributed among these distances:
2 6 0.08
3 45 0.59
4 23 0.30
5 2 0.03
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:24051656 original size:7 final size:7
Alignment explanation
Indices: 24051622--24051751 Score: 79
Period size: 7 Copynumber: 17.4 Consensus size: 7
24051612 AAAAAATATT
24051622 AATAGATA
1 AATA-ATA
* *
24051630 ATTAAAA
1 AATAATA
24051637 AATAA-A
1 AATAATA
*
24051643 AAAAATA
1 AATAATA
24051650 AATAATA
1 AATAATA
24051657 TTAATAGATA
1 --AATA-ATA
24051667 AATAATA
1 AATAATA
*
24051674 AAAAATA
1 AATAATA
24051681 TTAATAGATA
1 --AATA-ATA
24051691 AATAATA
1 AATAATA
24051698 AATATATA
1 AATA-ATA
24051706 TTAATTAATA
1 --AA-TAATA
*
24051716 AATAAAA
1 AATAATA
24051723 TAATAAT-
1 -AATAATA
24051730 AATAATA
1 AATAATA
24051737 AATAA-A
1 AATAATA
24051743 AATAA-A
1 AATAATA
24051749 AAT
1 AAT
24051752 GCAAATGGGC
Statistics
Matches: 100, Mismatches: 9, Indels: 28
0.73 0.07 0.20
Matches are distributed among these distances:
6 21 0.21
7 38 0.38
8 21 0.21
9 7 0.07
10 11 0.11
11 2 0.02
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.29
Consensus pattern (7 bp):
AATAATA
Found at i:24051673 original size:24 final size:23
Alignment explanation
Indices: 24051637--24051747 Score: 131
Period size: 24 Copynumber: 4.8 Consensus size: 23
24051627 ATAATTAAAA
*
24051637 AATAA-AAAAAATAAATAATATT
1 AATAATAAATAATAAATAATATT
*
24051659 AATAGATAAATAATAAAAAATATT
1 AATA-ATAAATAATAAATAATATT
24051683 AATAGATAAATAATAAATATATATT
1 AATA-ATAAATAATAAATA-ATATT
*
24051708 AATTAATAAAT-A-AAATAATAAT
1 AA-TAATAAATAATAAATAATATT
24051730 AATAATAAATAA-AAATAA
1 AATAATAAATAATAAATAA
24051748 AAATGCAAAT
Statistics
Matches: 80, Mismatches: 4, Indels: 10
0.85 0.04 0.11
Matches are distributed among these distances:
21 8 0.10
22 17 0.21
23 6 0.08
24 34 0.43
25 13 0.16
26 2 0.03
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (23 bp):
AATAATAAATAATAAATAATATT
Found at i:24051741 original size:21 final size:21
Alignment explanation
Indices: 24051609--24051743 Score: 91
Period size: 21 Copynumber: 6.3 Consensus size: 21
24051599 CAAAAAAAAG
* *
24051609 ATAAAAAAATATTAATAGATAA
1 ATAAAATAATAATAATA-ATAA
* * *
24051631 TTAAAA-AATAAAAAAAATAA
1 ATAAAATAATAATAATAATAA
*
24051651 AT--AATATTAATAGATAA-ATA
1 ATAAAATAATAATA-ATAATA-A
*
24051671 ATAAAA-AATATTAATAGATAA
1 ATAAAATAATAATAATA-ATAA
*
24051692 ATAATAAATATATATTAATTAATAA
1 AT-A-AAATA-ATAATAA-TAATAA
24051717 ATAAAATAATAATAATAATAA
1 ATAAAATAATAATAATAATAA
24051738 ATAAAA
1 ATAAAA
24051744 ATAAAAATGC
Statistics
Matches: 90, Mismatches: 11, Indels: 25
0.71 0.09 0.20
Matches are distributed among these distances:
18 2 0.02
19 6 0.07
20 14 0.16
21 28 0.31
22 15 0.17
23 8 0.09
24 2 0.02
25 13 0.14
26 2 0.02
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
ATAAAATAATAATAATAATAA
Found at i:24051947 original size:28 final size:27
Alignment explanation
Indices: 24051899--24051951 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
24051889 ACATTTCGTA
*
24051899 AATTCATAAATCAATATAAAAATATGTC
1 AATTCATAAATCAATA-CAAAATATGTC
* *
24051927 AATTCATAAATCATTGCAAAATATG
1 AATTCATAAATCAATACAAAATATG
24051952 CTACCATTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.51, C:0.11, G:0.06, T:0.32
Consensus pattern (27 bp):
AATTCATAAATCAATACAAAATATGTC
Found at i:24052060 original size:47 final size:48
Alignment explanation
Indices: 24051978--24052069 Score: 132
Period size: 47 Copynumber: 1.9 Consensus size: 48
24051968 ATAACAAAAT
* ** *
24051978 CAAATCATGGATCAATCATTAAAAATTATTGTAAATCATCTTTATATA
1 CAAATCATGGATCAATCATTAAAAATCATCATAAATCATCATTATATA
*
24052026 CAAATCATGGATCAATC-TTTAAAATCATCATAAATCATCATTAT
1 CAAATCATGGATCAATCATTAAAAATCATCATAAATCATCATTAT
24052070 CATTAGTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 22 0.56
48 17 0.44
ACGTcount: A:0.43, C:0.15, G:0.05, T:0.36
Consensus pattern (48 bp):
CAAATCATGGATCAATCATTAAAAATCATCATAAATCATCATTATATA
Found at i:24055814 original size:52 final size:52
Alignment explanation
Indices: 24055735--24055833 Score: 162
Period size: 52 Copynumber: 1.9 Consensus size: 52
24055725 TATAACCTTA
*
24055735 CAAACTCGCCTATTAAAAATCTCTTTTCTCTTAGAATTCTTCTTCTGCATGT
1 CAAACTCGCCTATTAAAAATCTCTTTTCTCTTAAAATTCTTCTTCTGCATGT
* * *
24055787 CAAACTTGCCTATTAAGAATCTTTTTTCTCTTAAAATTCTTCTTCTG
1 CAAACTCGCCTATTAAAAATCTCTTTTCTCTTAAAATTCTTCTTCTG
24055834 TAAGTCTTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.25, C:0.23, G:0.07, T:0.44
Consensus pattern (52 bp):
CAAACTCGCCTATTAAAAATCTCTTTTCTCTTAAAATTCTTCTTCTGCATGT
Found at i:24056156 original size:779 final size:777
Alignment explanation
Indices: 24054605--24056695 Score: 2728
Period size: 779 Copynumber: 2.7 Consensus size: 777
24054595 CTATTAGGCC
* * * * * *
24054605 AAAAGCC-CTAATTTTATTCATGTCAGTGGAAGCATAATCAAACAATTAATTAAACACATAAGAG
1 AAAAGCCTC-AATCTTATTCATGTCAGCGAAAGCATAATCAAACAATAAATCAAACATATAAGAG
* * *
24054669 ATAATAATTT-ACGT-AGTTCGATCCAACTGACCTACGTCCATAGATGAGAAACAAGATTCACTA
65 ACAATAATTTAACGTGA-TTCGATCCAACTGACCTACGTCTATGGATGAGAAACAAGA-TCACTA
* * * **
24054732 GTTGTAGATAATTACAAACATACATCCAATCATATCAACCACTCAACAATCAGTACTTATAGACC
128 GTTGTAAAAAATTACAAACATACATCCAATCATATCAACCACTCAACAATCAATACCCATAGACC
* * * *
24054797 ATTTCAATCTCTTTTAATCCACTCACAAACAAATATATATACCCATAAGACGTAAATCTTTAGTA
193 CTCTCAATCTCTTTTAGTCTACTCACAAACAAATATATATA-CCATAAGACGTAAATCTTTAGTA
* *
24054862 GTCTTATGGGGTGTTTACCTATAAAATCCTACAACTCTTTTACATCTTTTTCTCATACCTAACCC
257 GTCTTATGGGGTGTCTACC-ATAAAATCCTACAACTCTTTTATATCTTTTTCTCATACCTAACCC
* *
24054927 TATAGAGACTTTACCTATTTATAACCATACAAACTTGCCTATTAAGAATCTATTTCCTCTTAGAA
321 TATAGAGACTTTACCTATTTATAACCATACAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAA
* ** * **
24054992 TTATTCTTCTGTATGTCAAACTTACCTATTAAGAATCCATTTTCACTTAGAATTCTTCTTCTACA
386 TTATTCTTCTGCATGTCAAACTTACCTATTAAGAATCTTTTTTCTCTTAGAATTCTTCTTCTGTA
* * * * * *
24055057 AGTCTTCTTGTTCATCAAGCAATATCTGACCAATCCCAAATAAATCTCTTATAGGATTTAAGTCA
451 AGTCTTCTTATCCATCAAGCAATATCTGACTAATCTCAAACAAATCTCTTATGGGATTTAAGTCA
* ** * *
24055122 TTATTCCCAACAATCTCTATTTTGAATCACATTTCATCAAATCATCTATCTTCATGCTAGACATG
516 TTATTCCCAACAATCTCCACCTTGAATCAAATTTCATCAAATCATCTATCTTCATGCTAGACATA
* * * * * * *
24055187 CTTGGTTTCACTTGCAAATGAAAGTTTCACAATCAATTTTTCTTATGTGTTTTCACACTTCATGC
581 CTTGGTCTCACCTGCAAATAAAAGTCTCACAATCAATTTCTCTTATGTGTCTTCACACATCATGC
* ** ** * * *
24055252 AAATTGATCTTCAAAACATGAACTTGAACTTCTTCATTGAGTTGAGCTCCTTTGGACTTGTCTCT
646 AAACTGATCTTCAAAACACAAACTCAAACTTCTTCATTGAGTCGAGCTCCTCTGGACTTGCCTCT
* * * * * *
24055317 TTTCATGGTTTGAATCTTCAGCTCTTCTCATGTCTCAAACCTTTAGCCTGATAACACTTGTTAAG
711 TTCCATGGCTCGAACCTTCAGATCTTCTCACGTCTCAAACCTTTAGCCTGATAACACTTGTTAAG
24055382 CT
776 CT
* * *
24055384 AAAAGCC-CCATCTTATTCATGTCAACGAAAGCATAATCAAATAATAAATCAAACATATAAGAGA
1 AAAAGCCTCAATCTTATTCATGTCAGCGAAAGCATAATCAAACAATAAATCAAACATATAAGAGA
* *
24055448 CAATAATTTAACGTGATTCGATCCAACTGACCTATGTCTACGGATGAGAAACAAGATCAACTAGT
66 CAATAATTTAACGTGATTCGATCCAACTGACCTACGTCTATGGATGAGAAACAAGATC-ACTAGT
* * * *
24055513 TATAAAAAATTACAAATATATATCTAATCATATCAACCACTCAACAATCAATACCCATAGACCCT
130 TGTAAAAAATTACAAACATACATCCAATCATATCAACCACTCAACAATCAATACCCATAGACCCT
* * * *
24055578 CTCAATCTCTTTTAGTCTACTCACAAATAAATATATACATCCATAAGACGTAAATATTTAGTTGT
195 CTCAATCTCTTTTAGTCTACTCACAAACAAATATATATA-CCATAAGACGTAAATCTTTAGTAGT
* * *
24055643 CTTATAGGGTGTCTACCAATAAAATCCTATAACTCTTTTATATCTTTTTCTCATACCAAACCCTA
259 CTTATGGGGTGTCTACC-ATAAAATCCTACAACTCTTTTATATCTTTTTCTCATACCTAACCCTA
* * *
24055708 TAGAGACTTTACCTATTTATAACCTTACAAACTCGCCTATTAAAAATCTCTTTTCTCTTAGAATT
323 TAGAGACTTTACCTATTTATAACCATACAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAATT
* * *
24055773 CTTCTTCTGCATGTCAAACTTGCCTATTAAGAATCTTTTTTCTCTTAAAATTCTTCTTCTGTAAG
388 ATTCTTCTGCATGTCAAACTTACCTATTAAGAATCTTTTTTCTCTTAGAATTCTTCTTCTGTAAG
*
24055838 TCTTCTTATCCATCAAGCAATATCT-AGCTAATCTCAAACAAATCTCTTATGGGATTTGAGTCAT
453 TCTTCTTATCCATCAAGCAATATCTGA-CTAATCTCAAACAAATCTCTTATGGGATTTAAGTCAT
* * * * *
24055902 TATTCCTAATAATCTCCACCTTGACTTAAATTTCATCAAATCATCTATTTTCATGCTAGACATAC
517 TATTCCCAACAATCTCCACCTTGAATCAAATTTCATCAAATCATCTATCTTCATGCTAGACATAC
*
24055967 TTGG-CTCTACCTGC-AATAAAAGTCTCACAATC-ATCTTCTCTTGTGTGTCTTCACACATCATG
582 TTGGTCTC-ACCTGCAAATAAAAGTCTCACAATCAAT-TTCTCTTATGTGTCTTCACACATCATG
* * *
24056029 CAAACTGATCTTCAAAACACAAACTCAAATTTTTTCCTTGAGTCGAGCTCCTCTGGACTTGCCTC
645 CAAACTGATCTTCAAAACACAAACTCAAACTTCTTCATTGAGTCGAGCTCCTCTGGACTTGCCTC
* *
24056094 TTTCCATGGCTCGAACCTTCAGATCTTCTCACGTCTCAAACCTTTAGCTTTGATATCACTTGTTA
710 TTTCCATGGCTCGAACCTTCAGATCTTCTCACGTCTCAAACCTTTAGC-CTGATAACACTTGTTA
*
24056159 GGCT
774 AGCT
* * * * *
24056163 AAAAGCCTTAATCTTATTCACGTTAGC-AGAAGCTTAATCAAACAATGAATCAAACATATAAGAG
1 AAAAGCCTCAATCTTATTCATGTCAGCGA-AAGCATAATCAAACAATAAATCAAACATATAAGAG
* * * * * * * *
24056227 ACAATAATTTAACGTGGTTTGGTCTAACTGACCTACATCTATGGATGAGAAATAAAATTTACTAG
65 ACAATAATTTAACGTGATTCGATCCAACTGACCTACGTCTATGGATGAGAAACAAGA-TCACTAG
* * * * *
24056292 TTGTAAAGAATTATAAACATACATCCAATCATATCAACCACTTAATAATCAATACCCATAGATCC
129 TTGTAAAAAATTACAAACATACATCCAATCATATCAACCACTCAACAATCAATACCCATAGACCC
* * * * * *
24056357 TCTCAATCTCCTCTAGTCTACTCATAAACAAACATATATACCTATAAGACGTAAATCTTCAATAG
194 TCTCAATCTCTTTTAGTCTACTCACAAACAAATATATATACC-ATAAGACGTAAATCTTTAGTAG
* * * *
24056422 TCTTATGGGGTATCTACTCATAAAACCCTACAATTCTTTTATATTTTTTTTCTCATACCTAACCC
258 TCTTATGGGGTGTCTAC-CATAAAATCCTACAACTCTTTTATA-TCTTTTTCTCATACCTAACCC
* * * *
24056487 TATAAACACTTCACCTATTTATAACCATACAAACTTGCCTATTAAGAAT-TCTTTTTCTCTTAAA
321 TATAGAGACTTTACCTATTTATAACCATACAAACTTGCCTATTAAGAATCTC-TTTTCTCTTAGA
* * * *
24056551 ATTTTTTTTCTGCATGTTAAACTTACCTATTAAGAAT-TCTTTTTCTCTTAGAATTCTTCTTTTG
385 ATTATTCTTCTGCATGTCAAACTTACCTATTAAGAATCT-TTTTTCTCTTAGAATTCTTCTTCTG
* *
24056615 TAAGTCTTCTTATCCATCAAGCAATATTTGACTAATCTTTAAACAAATCTCTTATGGGATTTAAG
449 TAAGTCTTCTTATCCATCAAGCAATATCTGACTAATC-TCAAACAAATCTCTTATGGGATTTAAG
24056680 TCATTATTCCCAACAA
513 TCATTATTCCCAACAA
24056696 AAACTAGGGA
Statistics
Matches: 1136, Mismatches: 159, Indels: 31
0.86 0.12 0.02
Matches are distributed among these distances:
777 2 0.00
778 195 0.17
779 487 0.43
780 247 0.22
781 165 0.15
782 40 0.04
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.35
Consensus pattern (777 bp):
AAAAGCCTCAATCTTATTCATGTCAGCGAAAGCATAATCAAACAATAAATCAAACATATAAGAGA
CAATAATTTAACGTGATTCGATCCAACTGACCTACGTCTATGGATGAGAAACAAGATCACTAGTT
GTAAAAAATTACAAACATACATCCAATCATATCAACCACTCAACAATCAATACCCATAGACCCTC
TCAATCTCTTTTAGTCTACTCACAAACAAATATATATACCATAAGACGTAAATCTTTAGTAGTCT
TATGGGGTGTCTACCATAAAATCCTACAACTCTTTTATATCTTTTTCTCATACCTAACCCTATAG
AGACTTTACCTATTTATAACCATACAAACTTGCCTATTAAGAATCTCTTTTCTCTTAGAATTATT
CTTCTGCATGTCAAACTTACCTATTAAGAATCTTTTTTCTCTTAGAATTCTTCTTCTGTAAGTCT
TCTTATCCATCAAGCAATATCTGACTAATCTCAAACAAATCTCTTATGGGATTTAAGTCATTATT
CCCAACAATCTCCACCTTGAATCAAATTTCATCAAATCATCTATCTTCATGCTAGACATACTTGG
TCTCACCTGCAAATAAAAGTCTCACAATCAATTTCTCTTATGTGTCTTCACACATCATGCAAACT
GATCTTCAAAACACAAACTCAAACTTCTTCATTGAGTCGAGCTCCTCTGGACTTGCCTCTTTCCA
TGGCTCGAACCTTCAGATCTTCTCACGTCTCAAACCTTTAGCCTGATAACACTTGTTAAGCT
Found at i:24056558 original size:17 final size:18
Alignment explanation
Indices: 24056528--24056561 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24056518 AACTTGCCTA
24056528 TTAAGAATTCTTTTTCTC
1 TTAAGAATTCTTTTTCTC
*
24056546 TTAA-AATTTTTTTTCT
1 TTAAGAATTCTTTTTCT
24056562 GCATGTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.24, C:0.12, G:0.03, T:0.62
Consensus pattern (18 bp):
TTAAGAATTCTTTTTCTC
Found at i:24059180 original size:11 final size:11
Alignment explanation
Indices: 24059164--24059192 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
24059154 AATATCTAAC
24059164 AAATCTCAAAT
1 AAATCTCAAAT
24059175 AAATCTCAAAT
1 AAATCTCAAAT
24059186 AAATCTC
1 AAATCTC
24059193 TTATGATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (11 bp):
AAATCTCAAAT
Found at i:24063478 original size:18 final size:18
Alignment explanation
Indices: 24063357--24063470 Score: 101
Period size: 18 Copynumber: 6.5 Consensus size: 18
24063347 TTTTGTTCTT
*
24063357 GATACATTTGGGGTGGAG
1 GATACATTTGTGGTGGAG
* * *
24063375 GATATA-TT-T-GAGGAT
1 GATACATTTGTGGTGGAG
*
24063390 GATACATTTGTGGTGGGG
1 GATACATTTGTGGTGGAG
24063408 GATACATTTGTGGTGG-G
1 GATACATTTGTGGTGGAG
** *
24063425 AGATACATTTGTGGTAAAT
1 -GATACATTTGTGGTGGAG
* *
24063444 GATATATTTGAGGTGGAG
1 GATACATTTGTGGTGGAG
24063462 GATACATTT
1 GATACATTT
24063471 AAGGTGGATA
Statistics
Matches: 74, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
15 9 0.12
16 2 0.03
17 4 0.05
18 59 0.80
ACGTcount: A:0.26, C:0.04, G:0.34, T:0.35
Consensus pattern (18 bp):
GATACATTTGTGGTGGAG
Found at i:24063833 original size:6 final size:6
Alignment explanation
Indices: 24063822--24063870 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
24063812 CCCAAATTCG
* * *
24063822 CACCAT CACCAT CACCAT CACCAT -ATCCAT CACCAC CATCAT CATCAT
1 CACCAT CACCAT CACCAT CACCAT CA-CCAT CACCAT CACCAT CACCAT
24063870 C
1 C
24063871 TGGACTTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 1 0.03
6 36 0.95
7 1 0.03
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (6 bp):
CACCAT
Found at i:24064549 original size:15 final size:16
Alignment explanation
Indices: 24064525--24064557 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24064515 CATCAATTGA
*
24064525 AAATACAATAATAAAT
1 AAATACAATAAAAAAT
24064541 AAATA-AATAAAAAAT
1 AAATACAATAAAAAAT
24064556 AA
1 AA
24064558 TTCAATTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (16 bp):
AAATACAATAAAAAAT
Found at i:24067728 original size:19 final size:19
Alignment explanation
Indices: 24067700--24067737 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
24067690 CTTTCTAGAA
*
24067700 TTTTCTTCTTCTC-TTTTCT
1 TTTTCATCTT-TCATTTTCT
24067719 TTTTCATCTTTCATTTTCT
1 TTTTCATCTTTCATTTTCT
24067738 CTTGCATCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (19 bp):
TTTTCATCTTTCATTTTCT
Found at i:24071738 original size:12 final size:12
Alignment explanation
Indices: 24071721--24071745 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24071711 AATATAGGTG
24071721 ACATTTTTAGCA
1 ACATTTTTAGCA
24071733 ACATTTTTAGCA
1 ACATTTTTAGCA
24071745 A
1 A
24071746 ATGCCTCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (12 bp):
ACATTTTTAGCA
Found at i:24074121 original size:125 final size:118
Alignment explanation
Indices: 24073848--24074162 Score: 301
Period size: 125 Copynumber: 2.6 Consensus size: 118
24073838 AAAAATTAAA
* * ** *** * **
24073848 GAGGATTATTCAAGGCA-TTTTAGCTAGAAAACGCATCCAATAATCCAAAAAAAAAAAAAGAATA
1 GAGGATTATTCAAAGCATTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAATTGAAT-
* * * * *
24073912 TGGTTATTTAAGGCGTTTCTAACAAAAAATGCCTTGAATAACTTTAATTTTTTT
65 GGGTTATTCAAAGCGTTTCTAACAAAAAATACCTTCAATAACTTTAATTTTTTT
* * * * *
24073966 GAGGATTATTCAAAGCATTTTTGGCTAGAAAACGCATTGAGTAATCTCTTACAAAAAAATTTAAT
1 GAGGATTATTCAAAGCATTTTTAGCTAGAAAACACATTGAATAATCCCTTAC-AAAAAATTGAAT
* *
24074031 GGGGTTATTCAAAGCGTTTCTAGCTAAAAATACCTTCAATAATCCCTTATAATTTTTTTT
65 -GGGTTATTCAAAGCGTTTCTAACAAAAAATACCTTCAATAA---CTT-TAA-TTTTTTT
* * * *
24074091 TAGGATTATTCAAAGCATTTTTTATC-AGAAAATACCTTGAATAATCCCTTACAAAAAATTGAAT
1 GAGGATTATTCAAAGCA-TTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAATTGAAT
24074155 GGGTTATT
65 GGGTTATT
24074163 GAAGGCATTT
Statistics
Matches: 159, Mismatches: 30, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
118 16 0.10
119 25 0.16
120 43 0.27
123 11 0.07
124 14 0.09
125 44 0.28
126 6 0.04
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (118 bp):
GAGGATTATTCAAAGCATTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAATTGAATG
GGTTATTCAAAGCGTTTCTAACAAAAAATACCTTCAATAACTTTAATTTTTTT
Found at i:24074186 original size:125 final size:125
Alignment explanation
Indices: 24073848--24074162 Score: 299
Period size: 120 Copynumber: 2.6 Consensus size: 125
24073838 AAAAATTAAA
* * ** ** * **
24073848 GAGGATTATTCAAGGCA-TTTTAGCTAGAAAACGCATCCAATAAT-CCAAAAAAAAAAAAAGAAT
1 GAGGATTATTCAAAGCATTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAAATTGAAT
** * * * * *
24073911 ATGGTTATTTAAGGCGTTTCTAACAAAAAATGCCTTGAATAA---CTT-TAA-TTTTTTT
66 GGGGTTATTCAAAGCGTTTCTAAAAAAAAATACCTTCAATAATCCCTTATAATTTTTTTT
* * * * *
24073966 GAGGATTATTCAAAGCATTTTTGGCTAGAAAACGCATTGAGTAATCTCTTACAAAAAAATTTAAT
1 GAGGATTATTCAAAGCATTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAAATTGAAT
***
24074031 GGGGTTATTCAAAGCGTTTCTAGCTAAAAATACCTTCAATAATCCCTTATAATTTTTTTT
66 GGGGTTATTCAAAGCGTTTCTAAAAAAAAATACCTTCAATAATCCCTTATAATTTTTTTT
* * * *
24074091 TAGGATTATTCAAAGCATTTTTTATC-AGAAAATACCTTGAATAATCCCTTAC-AAAAAATTGAA
1 GAGGATTATTCAAAGCA-TTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAAATTGAA
24074154 T-GGGTTATT
65 TGGGGTTATT
24074163 GAAGGCATTT
Statistics
Matches: 160, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
118 16 0.10
119 23 0.14
120 46 0.29
123 11 0.07
124 14 0.09
125 44 0.28
126 6 0.04
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (125 bp):
GAGGATTATTCAAAGCATTTTTAGCTAGAAAACACATTGAATAATCCCTTACAAAAAAATTGAAT
GGGGTTATTCAAAGCGTTTCTAAAAAAAAATACCTTCAATAATCCCTTATAATTTTTTTT
Found at i:24074361 original size:63 final size:63
Alignment explanation
Indices: 24074278--24074453 Score: 214
Period size: 64 Copynumber: 2.8 Consensus size: 63
24074268 TTTTTTTGAG
* * * *
24074278 GGGATTATTCAAGGTGTTTTTGATCAGAAAATGCCTTAAATAATCCCTTACAAAAAATTGAAT
1 GGGATTATTCAAGGTATTTTTGATCAAAAAATGCCTTGAATAATCCCTTACAAAAAATTAAAT
* * *
24074341 AGGG-TTATTCAAGGCATTTTT-AGCCAAAAAAATGCCTTGAATAATCCCTTATAAAAAATTAAA
1 -GGGATTATTCAAGGTATTTTTGA-TC-AAAAAATGCCTTGAATAATCCCTTACAAAAAATTAAA
24074404 T
63 T
* *
24074405 GGGATTATTCAAGATATTTATGAT-AAAAAATGCCTTGAATAATCTCCTT
1 GGGATTATTCAAGGTATTTTTGATCAAAAAATGCCTTGAATAATC-CCTT
24074454 CAATTAAAAG
Statistics
Matches: 96, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
62 21 0.22
63 23 0.24
64 51 0.53
65 1 0.01
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (63 bp):
GGGATTATTCAAGGTATTTTTGATCAAAAAATGCCTTGAATAATCCCTTACAAAAAATTAAAT
Found at i:24076418 original size:13 final size:13
Alignment explanation
Indices: 24076400--24076434 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
24076390 AACCTTGTTG
24076400 AAAAATTCAACTA
1 AAAAATTCAACTA
*
24076413 AAAAATTCAACTG
1 AAAAATTCAACTA
24076426 AAAAATTCA
1 AAAAATTCA
24076435 TCCTTCATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.60, C:0.14, G:0.03, T:0.23
Consensus pattern (13 bp):
AAAAATTCAACTA
Found at i:24076492 original size:18 final size:19
Alignment explanation
Indices: 24076458--24076494 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24076448 AATTCATACC
*
24076458 AAACTTAGATTTTTCCAAA
1 AAACTTAGATATTTCCAAA
24076477 AAACTTAGA-ATTTCCAAA
1 AAACTTAGATATTTCCAAA
24076495 TTCTTTCAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.46, C:0.16, G:0.05, T:0.32
Consensus pattern (19 bp):
AAACTTAGATATTTCCAAA
Found at i:24087136 original size:8 final size:8
Alignment explanation
Indices: 24087123--24087148 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
24087113 ATTCTTCTAT
24087123 TTATTTTA
1 TTATTTTA
24087131 TTATTTTA
1 TTATTTTA
24087139 TTATTTTA
1 TTATTTTA
24087147 TT
1 TT
24087149 TTTGCATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (8 bp):
TTATTTTA
Found at i:24087353 original size:19 final size:19
Alignment explanation
Indices: 24087331--24087386 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
24087321 ATTTTCCAAG
24087331 AAAATAATAAATATAAAAA
1 AAAATAATAAATATAAAAA
*
24087350 AAAATAATAAAAATATAAAA
1 AAAATAATAAATATA-AAAA
*
24087370 AACATAA-AAATATAAAA
1 AAAATAATAAATATAAAA
24087387 TTTTTAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 3 0.09
19 20 0.61
20 10 0.30
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.20
Consensus pattern (19 bp):
AAAATAATAAATATAAAAA
Found at i:24087361 original size:9 final size:9
Alignment explanation
Indices: 24087331--24087386 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
24087321 ATTTTCCAAG
24087331 AAAATAATA
1 AAAATAATA
* *
24087340 AATATAAAAA
1 AAAAT-AATA
24087350 AAAATAATA
1 AAAATAATA
24087359 AAAAT-ATA
1 AAAATAATA
24087367 AAAA-ACATA
1 AAAATA-ATA
24087376 AAAAT-ATA
1 AAAATAATA
24087384 AAA
1 AAA
24087387 TTTTTAGAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
8 13 0.33
9 19 0.49
10 7 0.18
ACGTcount: A:0.79, C:0.02, G:0.00, T:0.20
Consensus pattern (9 bp):
AAAATAATA
Found at i:24091978 original size:6 final size:7
Alignment explanation
Indices: 24091927--24091987 Score: 68
Period size: 8 Copynumber: 7.9 Consensus size: 7
24091917 TGAAAGAAAG
24091927 AAAAAATT
1 AAAAAA-T
24091935 AAAAAATT
1 AAAAAA-T
24091943 AAAAAAAT
1 -AAAAAAT
24091951 ACAAAAAT
1 A-AAAAAT
24091959 ACAAAAAT
1 A-AAAAAT
24091967 AAAAAAAT
1 -AAAAAAT
24091975 AAAAAAT
1 AAAAAAT
24091982 AAAAAA
1 AAAAAA
24091988 GATGAAAAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 7
0.88 0.00 0.12
Matches are distributed among these distances:
7 14 0.28
8 29 0.58
9 7 0.14
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAAAAT
Found at i:24091995 original size:15 final size:15
Alignment explanation
Indices: 24091927--24091987 Score: 77
Period size: 16 Copynumber: 3.9 Consensus size: 15
24091917 TGAAAGAAAG
*
24091927 AAAAAATTAAAAAATT
1 AAAAAA-TAAAAAAAT
*
24091943 AAAAAAATACAAAAAT
1 -AAAAAATAAAAAAAT
24091959 ACAAAAATAAAAAAAT
1 A-AAAAATAAAAAAAT
24091975 AAAAAATAAAAAA
1 AAAAAATAAAAAA
24091988 GATGAAAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
15 13 0.32
16 21 0.52
17 6 0.15
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (15 bp):
AAAAAATAAAAAAAT
Found at i:24093268 original size:22 final size:22
Alignment explanation
Indices: 24093240--24093285 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
24093230 GGATAAAGTC
*
24093240 TTCAAATGAGAATCTTTGAGTT
1 TTCAAATGAGAATCTTTGAATT
24093262 TTCAAATGAGAATCTTTGAATT
1 TTCAAATGAGAATCTTTGAATT
24093284 TT
1 TT
24093286 TGAGTTCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (22 bp):
TTCAAATGAGAATCTTTGAATT
Found at i:24093290 original size:30 final size:30
Alignment explanation
Indices: 24093249--24093315 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 30
24093239 CTTCAAATGA
* *
24093249 GAATCTTTGAGTTTTCAAATGAGAA-TCTTT
1 GAATTTTTGAGTTCTCAAATGA-AAGTCTTT
*
24093279 GAATTTTTGAGTTCTCAAGTGAAAGTCTTT
1 GAATTTTTGAGTTCTCAAATGAAAGTCTTT
24093309 GAATTTT
1 GAATTTT
24093316 CAATGAGAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 2 0.06
30 31 0.94
ACGTcount: A:0.28, C:0.09, G:0.18, T:0.45
Consensus pattern (30 bp):
GAATTTTTGAGTTCTCAAATGAAAGTCTTT
Found at i:24093363 original size:21 final size:21
Alignment explanation
Indices: 24093304--24093371 Score: 66
Period size: 21 Copynumber: 3.0 Consensus size: 21
24093294 CAAGTGAAAG
24093304 TCTTTGAATTTTC-AATGAGAA
1 TCTTTGAA-TTTCAAATGAGAA
* *
24093325 TCTTTTAAAAATCCTCAAATGAGAA
1 TC-TTT--GAAT-TTCAAATGAGAA
24093350 TCTTTGAATTTCAAATGAGAA
1 TCTTTGAATTTCAAATGAGAA
24093371 T
1 T
24093372 ATTTAAGGTG
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
21 14 0.37
22 6 0.16
23 1 0.03
24 7 0.18
25 10 0.26
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (21 bp):
TCTTTGAATTTCAAATGAGAA
Found at i:24093444 original size:21 final size:21
Alignment explanation
Indices: 24093418--24093477 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
24093408 ATCTTCGAAC
*
24093418 TCAAACGAGAATCTTTGAATT
1 TCAAACAAGAATCTTTGAATT
* *
24093439 TCAAACAAGAATTTTTAAATT
1 TCAAACAAGAATCTTTGAATT
*
24093460 TCAAATAAGAATCTTTGA
1 TCAAACAAGAATCTTTGA
24093478 GGTGCGAAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.35
Consensus pattern (21 bp):
TCAAACAAGAATCTTTGAATT
Found at i:24093464 original size:100 final size:100
Alignment explanation
Indices: 24093346--24093543 Score: 272
Period size: 100 Copynumber: 2.0 Consensus size: 100
24093336 TCCTCAAATG
* * *
24093346 AGAATCTTTGAATTTCAAATGAGAATATTTAAGGTGTGAAA-CCTAAAATTTGCCGAATGTGAAT
1 AGAATCTTTAAATTTCAAATAAGAATATTTAAGGTGCGAAATCC-AAAATTTGCCGAATGTGAAT
*
24093410 CTTCGAACTCAAACGAGAATCTTTGAATTTCAAACA
65 ATTCGAACTCAAACGAGAATCTTTGAATTTCAAACA
* * * ***
24093446 AGAATTTTTAAATTTCAAATAAGAATCTTTGAGGTGCGAAATCCAAAATTTTTTGAATGTGAATA
1 AGAATCTTTAAATTTCAAATAAGAATATTTAAGGTGCGAAATCCAAAATTTGCCGAATGTGAATA
* *
24093511 TTTGAACTCAAATGAGAATCTTTGAATTTCAAA
66 TTCGAACTCAAACGAGAATCTTTGAATTTCAAA
24093544 TTAGAAATTT
Statistics
Matches: 85, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 83 0.98
101 2 0.02
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.34
Consensus pattern (100 bp):
AGAATCTTTAAATTTCAAATAAGAATATTTAAGGTGCGAAATCCAAAATTTGCCGAATGTGAATA
TTCGAACTCAAACGAGAATCTTTGAATTTCAAACA
Found at i:24093601 original size:80 final size:79
Alignment explanation
Indices: 24093446--24093616 Score: 211
Period size: 80 Copynumber: 2.2 Consensus size: 79
24093436 ATTTCAAACA
* * * ** *
24093446 AGAATTTTTAAATTTCAAATAAGAATCTTTGAGGTGCGAAATCCAAAATTTTTTGAATGTGAATA
1 AGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGCGAAATCCAAAATTTGTCAAATGTGAACA
24093511 TTTGAACTCAAATG
66 TTTGAACTCAAATG
* *
24093525 AGAATCTTTGAATTTCAAATTAGAAAT-TTTGAGGTGTGAAA-CACTAAAATTTGTCAAATGTGA
1 AGAATCTTTGAATTTCAAATAAG-AATCTTTGAGGTGCGAAATC-C-AAAATTTGTCAAATGTGA
*
24093588 ACCTTTGAACTCAAATG
63 ACATTTGAACTCAAATG
*
24093605 AGAAGCTTTGAA
1 AGAATCTTTGAA
24093617 CTTTTGGATC
Statistics
Matches: 79, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 34 0.43
80 44 0.56
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (79 bp):
AGAATCTTTGAATTTCAAATAAGAATCTTTGAGGTGCGAAATCCAAAATTTGTCAAATGTGAACA
TTTGAACTCAAATG
Found at i:24093603 original size:20 final size:20
Alignment explanation
Indices: 24093578--24093618 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
24093568 CTAAAATTTG
*
24093578 TCAAATGTGAACCTTTGAAC
1 TCAAATGAGAACCTTTGAAC
*
24093598 TCAAATGAGAAGCTTTGAAC
1 TCAAATGAGAACCTTTGAAC
24093618 T
1 T
24093619 TTTGGATCCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (20 bp):
TCAAATGAGAACCTTTGAAC
Found at i:24093959 original size:42 final size:42
Alignment explanation
Indices: 24093849--24093984 Score: 166
Period size: 43 Copynumber: 3.2 Consensus size: 42
24093839 CAAAGAGCCT
** * *
24093849 TTTATTTTTCCAAAGTTGTGGTGCATCTATTTAGAGGAACAA
1 TTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
* * * *
24093891 TTTATTTTTTTCAAAGTTGTGGTGCCTTTGTTTAAAGGAGCAA
1 TTTA-TTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
* *
24093934 TTTATGTTTTAAAAGTTGTGATGCCTCTATTTAGAGGAGC-A
1 TTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
24093975 TTTATTTTTT
1 TTTATTTTTT
24093985 TCAAAGTCAT
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
41 10 0.12
42 34 0.43
43 36 0.45
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (42 bp):
TTTATTTTTTAAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
Found at i:24093991 original size:42 final size:42
Alignment explanation
Indices: 24093849--24093991 Score: 180
Period size: 42 Copynumber: 3.4 Consensus size: 42
24093839 CAAAGAGCCT
* * *
24093849 TTTATTTTTCCAAAGTTGTGGTGCATCTATTTAGAGGAACAA
1 TTTATTTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
* * *
24093891 TTTATTTTTTTCAAAGTTGTGGTGCCTTTGTTTAAAGGAGCAA
1 TTTA-TTTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
* * *
24093934 TTTATGTTTTAAAAGTTGTGATGCCTCTATTTAGAGGAGC-A
1 TTTATTTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
24093975 TTTATTTTTTTCAAAGT
1 TTTA-TTTTTTCAAAGT
24093992 CATTGAGCCT
Statistics
Matches: 85, Mismatches: 14, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
41 5 0.06
42 44 0.52
43 36 0.42
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (42 bp):
TTTATTTTTTCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAA
Found at i:24094009 original size:42 final size:41
Alignment explanation
Indices: 24093878--24094015 Score: 136
Period size: 42 Copynumber: 3.3 Consensus size: 41
24093868 GGTGCATCTA
* *
24093878 TTTAGAGGAACAATTTATTTTTTTCAAAGTTGTGGTGCCTTTG
1 TTTAGAGGAGCAATTTATTTTTTTCAAAGTT-T-GAGCCTTTG
* * * * *
24093921 TTTAAAGGAGCAATTTA-TGTTTTAAAAGTTGTGATGCCTCTA
1 TTTAGAGGAGCAATTTATTTTTTTCAAAGTT-TGA-GCCTTTG
24093963 TTTAGAGGAGC-ATTTATTTTTTTCAAAGTCATTGAGCCTTTG
1 TTTAGAGGAGCAATTTATTTTTTTCAAAGT--TTGAGCCTTTG
*
24094005 TTTAGAAGAGC
1 TTTAGAGGAGC
24094016 TTTGTTTACT
Statistics
Matches: 78, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
41 6 0.08
42 53 0.68
43 18 0.23
44 1 0.01
ACGTcount: A:0.27, C:0.10, G:0.20, T:0.43
Consensus pattern (41 bp):
TTTAGAGGAGCAATTTATTTTTTTCAAAGTTTGAGCCTTTG
Found at i:24094454 original size:22 final size:23
Alignment explanation
Indices: 24094428--24094482 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 23
24094418 TTTATTTTCC
24094428 AACAAAAATAAT-AAATATAAAA
1 AACAAAAATAATAAAATATAAAA
24094450 AACAAAAATAATAAAAATATAAAA
1 AACAAAAATAAT-AAAATATAAAA
24094474 AACATAAAA
1 AACA-AAAA
24094483 ATATACAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 12 0.40
24 14 0.47
25 4 0.13
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.16
Consensus pattern (23 bp):
AACAAAAATAATAAAATATAAAA
Found at i:24094473 original size:17 final size:17
Alignment explanation
Indices: 24094431--24094487 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
24094421 ATTTTCCAAC
*
24094431 AAAAATA-ATAAAT-AT
1 AAAAATATAAAAATAAT
*
24094446 AAAAA-ACAAAAATAAT
1 AAAAATATAAAAATAAT
24094462 AAAAATATAAAAA-ACAT
1 AAAAATATAAAAATA-AT
24094479 AAAAATATA
1 AAAAATATA
24094488 CAATTTTTGG
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
14 1 0.03
15 10 0.28
16 8 0.22
17 17 0.47
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAAATATAAAAATAAT
Found at i:24103460 original size:56 final size:57
Alignment explanation
Indices: 24103226--24103518 Score: 335
Period size: 57 Copynumber: 5.1 Consensus size: 57
24103216 TTGTACAAGA
* * *
24103226 AAAATTAATACTTTCAACTTTTTCTCAAAATATTTTTT-TAAAACTTTAATTTC-AAG
1 AAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTAGAAAAC-TTATTTTCAAAG
* * * *
24103282 AAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTA-AAAAATTATTTTCAAAG
1 -AAAATTGATACTTTCAACTTTTTCT--CAAAATA--TTTTTTAGAAAACTTATTTTCAAAG
* * * * *
24103343 AAAATTAATATTTTCAACTTTTTCTGGAAAATATTTTTTAGAAAACTTATCTTCAAGG
1 AAAATTGATACTTTCAACTTTTTCT-CAAAATATTTTTTAGAAAACTTATTTTCAAAG
24103401 AAAATTGATACTTTCAACTTTTTCTCAAAAT-TTTTTTAGAAAACTTATTTTCAAAG
1 AAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTAGAAAACTTATTTTCAAAG
* * * *
24103457 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAGACTT-TATTCAAAG
1 AAAATTGATACTTTCAACTTTTTCTC-AAAATATTTTTTAGAAAACTTATTTTCAAAG
24103514 AAAAT
1 AAAAT
24103519 CAAAAAAAAT
Statistics
Matches: 203, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
56 48 0.24
57 53 0.26
58 50 0.25
59 10 0.05
60 29 0.14
61 13 0.06
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTAGAAAACTTATTTTCAAAG
Found at i:24103515 original size:57 final size:57
Alignment explanation
Indices: 24103226--24103518 Score: 317
Period size: 58 Copynumber: 5.1 Consensus size: 57
24103216 TTGTACAAGA
*
24103226 AAAATTAATACTTTCAACTTTTTCTCAAAATATTTTTTT-AAAACTT-TAATTTC-AAG
1 AAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTTGAAAACTTAT-A-TTCAAAG
* * * * * * *
24103282 AAAAATTGATACTTTCAACTTTTCCTAAAAAAAAACCTTTTTTAAAAAATTATTTTCAAAG
1 -AAAATTGATACTTTCAACTTTTTCT--CAAAATA-TTTTTTTGAAAACTTATATTCAAAG
* * * * * *
24103343 AAAATTAATATTTTCAACTTTTTCTGGAAAATATTTTTTAGAAAACTTATCTTCAAGG
1 AAAATTGATACTTTCAACTTTTTCT-CAAAATATTTTTTTGAAAACTTATATTCAAAG
* *
24103401 AAAATTGATACTTTCAACTTTTTCTCAAAAT-TTTTTTAGAAAACTTATTTTCAAAG
1 AAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTTGAAAACTTATATTCAAAG
* *
24103457 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAGACTT-TATTCAAAG
1 AAAATTGATACTTTCAACTTTTTCTC-AAAATATTTTTTTGAAAACTTATATTCAAAG
24103514 AAAAT
1 AAAAT
24103519 CAAAAAAAAT
Statistics
Matches: 200, Mismatches: 28, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
56 48 0.24
57 46 0.23
58 55 0.28
59 10 0.05
60 31 0.16
61 9 0.05
62 1 0.00
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.42
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTTCTCAAAATATTTTTTTGAAAACTTATATTCAAAG
Found at i:24103538 original size:5 final size:5
Alignment explanation
Indices: 24103514--24103567 Score: 56
Period size: 5 Copynumber: 10.4 Consensus size: 5
24103504 TTATTCAAAG
* *
24103514 AAAAT CAAAA- AAAAT AAAAAT AAAAAT AGAAT AAAAG AAAAT AAAAT
1 AAAAT -AAAAT AAAAT -AAAAT -AAAAT AAAAT AAAAT AAAAT AAAAT
24103561 AAAAT AA
1 AAAAT AA
24103568 GAAATACTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
4 4 0.10
5 23 0.55
6 15 0.36
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:24103573 original size:27 final size:27
Alignment explanation
Indices: 24103515--24103573 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
24103505 TATTCAAAGA
24103515 AAATCAAAAAAAATAAAAATAAAAATAG
1 AAAT-AAAAAAAATAAAAATAAAAATAG
24103543 -AATAAAAGAAAAT-AAAAT-AAAATAAG
1 AAATAAAA-AAAATAAAAATAAAAAT-AG
24103569 AAATA
1 AAATA
24103574 CTAAATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
25 5 0.18
26 11 0.39
27 12 0.43
ACGTcount: A:0.78, C:0.02, G:0.05, T:0.15
Consensus pattern (27 bp):
AAATAAAAAAAATAAAAATAAAAATAG
Found at i:24104476 original size:16 final size:17
Alignment explanation
Indices: 24104455--24104570 Score: 93
Period size: 16 Copynumber: 7.1 Consensus size: 17
24104445 TAAAGATAAT
24104455 ATATTAATAGATAAA-A
1 ATATTAATAGATAAATA
24104471 ATATTAATAGATAAATA
1 ATATTAATAGATAAATA
* *
24104488 ATAATAA-AG-TATAT-
1 ATATTAATAGATAAATA
*
24104502 ATATTAACAGATAAATA
1 ATATTAATAGATAAATA
* *
24104519 ATAATAATATATATTAATAA
1 ATATTAATAGATA--AAT-A
*
24104539 ATAGTAATA-ATAAATA
1 ATATTAATAGATAAATA
*
24104555 A-ATAAATA-ATAAATA
1 ATATTAATAGATAAATA
24104570 A
1 A
24104571 AATAAATAAA
Statistics
Matches: 83, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.07
15 19 0.23
16 23 0.28
17 20 0.24
19 6 0.07
20 9 0.11
ACGTcount: A:0.62, C:0.01, G:0.04, T:0.33
Consensus pattern (17 bp):
ATATTAATAGATAAATA
Found at i:24104489 original size:27 final size:26
Alignment explanation
Indices: 24104459--24104576 Score: 91
Period size: 31 Copynumber: 4.4 Consensus size: 26
24104449 GATAATATAT
24104459 TAATAGATAAAAATATTAATAGATAAA
1 TAATA-ATAAAAATATTAATAGATAAA
*
24104486 TAATAATAAAGTATATATATTAACAGATAAA
1 TAATAAT-AA--A-A-ATATTAATAGATAAA
* * *
24104517 TAATAATAATATATATTAATAAAT-AG
1 TAATAATAA-AAATATTAATAGATAAA
*
24104543 TAATAATAAATAA-ATAAATA-ATAAA
1 TAATAATAAA-AATATTAATAGATAAA
24104568 TAA-AATAAA
1 TAATAATAAA
24104577 TAAAAATACA
Statistics
Matches: 76, Mismatches: 8, Indels: 17
0.75 0.08 0.17
Matches are distributed among these distances:
24 8 0.11
25 11 0.14
26 13 0.17
27 17 0.22
29 3 0.04
30 3 0.04
31 21 0.28
ACGTcount: A:0.64, C:0.01, G:0.04, T:0.31
Consensus pattern (26 bp):
TAATAATAAAAATATTAATAGATAAA
Found at i:24104506 original size:31 final size:29
Alignment explanation
Indices: 24104471--24104576 Score: 102
Period size: 31 Copynumber: 3.9 Consensus size: 29
24104461 ATAGATAAAA
24104471 ATATTAATAGATAAATAATAATAAAGTATAT
1 ATATTAATAGATAAATAATAATAAA--ATAT
*
24104502 ATATTAACAGATAAATAATAAT--AATAT
1 ATATTAATAGATAAATAATAATAAAATAT
* *
24104529 ATATTAATAAAT-AGTAATAAT-AAATA-
1 ATATTAATAGATAAATAATAATAAAATAT
*
24104555 A-ATAAATA-ATAAATAA-AATAAA
1 ATATTAATAGATAAATAATAATAAA
24104577 TAAAAATACA
Statistics
Matches: 66, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
24 5 0.08
25 12 0.18
26 9 0.14
27 18 0.27
29 1 0.02
31 21 0.32
ACGTcount: A:0.63, C:0.01, G:0.04, T:0.32
Consensus pattern (29 bp):
ATATTAATAGATAAATAATAATAAAATAT
Found at i:24104519 original size:4 final size:4
Alignment explanation
Indices: 24104512--24104580 Score: 56
Period size: 4 Copynumber: 17.2 Consensus size: 4
24104502 ATATTAACAG
* *
24104512 ATAA AT-A AT-A ATAA TATAT ATTA ATAA ATAGTA AT-A ATAA ATAA ATAA
1 ATAA ATAA ATAA ATAA -ATAA ATAA ATAA ATA--A ATAA ATAA ATAA ATAA
24104560 AT-A ATAA ATAAA ATAA ATAA A
1 ATAA ATAA AT-AA ATAA ATAA A
24104581 AATACAAAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
3 12 0.22
4 32 0.59
5 7 0.13
6 3 0.06
ACGTcount: A:0.68, C:0.00, G:0.01, T:0.30
Consensus pattern (4 bp):
ATAA
Found at i:24104538 original size:47 final size:47
Alignment explanation
Indices: 24104437--24104527 Score: 132
Period size: 47 Copynumber: 1.9 Consensus size: 47
24104427 AAAAAGAAAA
* *
24104437 AAATAA-AATAAAGATAATATATTAATAGATAAAAATATTAATAGAT
1 AAATAATAATAAAGATAATATATTAACAGATAAAAATAATAATAGAT
24104483 AAATAATAATAAAG-TATATATATTAACAGATAAATAATAATAATA
1 AAATAATAATAAAGATA-ATATATTAACAGATAAA-AATAATAATA
24104528 TATATTAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
46 8 0.20
47 23 0.57
48 9 0.22
ACGTcount: A:0.63, C:0.01, G:0.05, T:0.31
Consensus pattern (47 bp):
AAATAATAATAAAGATAATATATTAACAGATAAAAATAATAATAGAT
Found at i:24104589 original size:7 final size:7
Alignment explanation
Indices: 24104574--24104605 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
24104564 TAAATAAAAT
24104574 AAATA-A
1 AAATACA
24104580 AAATACA
1 AAATACA
24104587 AAATACA
1 AAATACA
24104594 AAATACA
1 AAATACA
24104601 AAATA
1 AAATA
24104606 AAATAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.20
7 20 0.80
ACGTcount: A:0.75, C:0.09, G:0.00, T:0.16
Consensus pattern (7 bp):
AAATACA
Found at i:24104889 original size:44 final size:44
Alignment explanation
Indices: 24104841--24105213 Score: 326
Period size: 42 Copynumber: 8.7 Consensus size: 44
24104831 ATAATTTCAG
**
24104841 AAAAATAAATAAAGCTATTCTAAACAGAGGCTCAACGACTTTGA
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGA
* * * *
24104885 AAAAATAAAT-AA-CTCCTTTAAATAGAGGCTCAAC-AATTTCAA
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGACTTT-GA
* * * *
24104927 AAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAATGACTTTGG
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGA
*
24104971 AAAAATAAATAAAGCTCCTATAAACAGAGGCTCAACGACTTTTGA
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGA
* * * * *
24105016 AAAGATAAACAAAGCTCCTCTAAACAGAGGCTTAACAACTTT-T
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGA
* * * *
24105059 AAAAATAAA-AAGGCTCCTCTAATCAGAAGCTCAATGACTTTTG-
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGA
* * *
24105102 AAAAGTAAAT--TGCTCCTCTGAACAGAGGCTCAACGACTTTTG-
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGA
* * * * *
24105144 AAAAGTAAAT--TGCTCCTTTAATCAGAGGCATC-ACAACTTTG-
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGC-TCAACGACTTTGA
* *
24105185 AAAAATAGAT--TGCTCCTCTAAACAGAGGC
1 AAAAATAAATAAAGCTCCTCTAAACAGAGGC
24105214 ATCACAACTT
Statistics
Matches: 274, Mismatches: 46, Indels: 21
0.80 0.13 0.06
Matches are distributed among these distances:
41 33 0.12
42 108 0.39
43 25 0.09
44 66 0.24
45 42 0.15
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (44 bp):
AAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGA
Found at i:24104958 original size:86 final size:89
Alignment explanation
Indices: 24104833--24105147 Score: 313
Period size: 86 Copynumber: 3.6 Consensus size: 89
24104823 GAAGCTTAAT
* * **
24104833 AATTTCAGAAAAATAAATAAAGCTATTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAAT-AA
1 AATTTCAAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATAAA
* *
24104897 -CTCCTTTAAATAGAGGCTCAAC-
66 GCTCCTATAAACAGAGGCTCAACG
* * *
24104919 AATTTCAAAAAAATAAACAAAGCTCCTCTAAACAAAGGCTCAATGACTTTGGAAAAATAAATAAA
1 AATTTCAAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATAAA
24104984 GCTCCTATAAACAGAGGCTCAACG
66 GCTCCTATAAACAGAGGCTCAACG
* ** * * * * *
24105008 ACTTTTGAAAAGATAAACAAAGCTCCTCTAAACAGAGGCTTAACAACTTT-TAAAAATAAA-AAG
1 AATTTCAAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATAAA
* * * *
24105071 GCTCCTCTAATCAGAAGCTCAATG
66 GCTCCTATAAACAGAGGCTCAACG
* ** * ** *
24105095 ACTTT-TGAAAAGT-AA-ATTGCTCCTCTGAACAGAGGCTCAACGACTTTTGAAAA
1 AATTTCAAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAA
24105148 GTAAATTGCT
Statistics
Matches: 191, Mismatches: 33, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
84 24 0.13
85 5 0.03
86 62 0.32
87 29 0.15
88 29 0.15
89 42 0.22
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.24
Consensus pattern (89 bp):
AATTTCAAAAAAATAAACAAAGCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAAATAAATAAA
GCTCCTATAAACAGAGGCTCAACG
Found at i:24105197 original size:41 final size:40
Alignment explanation
Indices: 24105098--24105243 Score: 161
Period size: 41 Copynumber: 3.5 Consensus size: 40
24105088 CTCAATGACT
* * *
24105098 TTTGAAAAGTAAATTGCTCCTCTGAACAGAGGC-TCAACGAC
1 TTTGAAAAATAAATTGCTCCT-TTAACAGAGGCATC-ACAAC
*
24105139 TTTTGAAAAGTAAATTGCTCCTTTAATCAGAGGCATCACAAC
1 -TTTGAAAAATAAATTGCTCCTTTAA-CAGAGGCATCACAAC
* *
24105181 TTTGAAAAATAGATTGCTCCTCTAAACAGAGGCATCACAAC
1 TTTGAAAAATAAATTGCTCCT-TTAACAGAGGCATCACAAC
*
24105222 -TTCAGAAAATAAATTGCTCCTT
1 TTTGA-AAAATAAATTGCTCCTT
24105244 GACAATCATG
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
40 4 0.04
41 52 0.56
42 35 0.38
43 2 0.02
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (40 bp):
TTTGAAAAATAAATTGCTCCTTTAACAGAGGCATCACAAC
Found at i:24106288 original size:12 final size:11
Alignment explanation
Indices: 24106259--24106306 Score: 51
Period size: 12 Copynumber: 4.1 Consensus size: 11
24106249 TTTCATTCAC
24106259 TTTTTCTTTTCT
1 TTTTTCTTTT-T
*
24106271 TGTTTCTTTTT
1 TTTTTCTTTTT
*
24106282 TCTTTTCATTTT
1 T-TTTTCTTTTT
24106294 TTTTTCATTTTT
1 TTTTTC-TTTTT
24106306 T
1 T
24106307 GGTAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 7 0.23
12 23 0.77
ACGTcount: A:0.04, C:0.12, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTCTTTTT
Found at i:24106304 original size:10 final size:11
Alignment explanation
Indices: 24106259--24106306 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
24106249 TTTCATTCAC
24106259 TTTTTC-TTTT
1 TTTTTCATTTT
*
24106269 CTTGTTTCTTTTT
1 -TT-TTTCATTTT
24106282 TCTTTTCATTTT
1 T-TTTTCATTTT
24106294 TTTTTCATTTT
1 TTTTTCATTTT
24106305 TT
1 TT
24106307 GGTAAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
11 14 0.42
12 14 0.42
13 5 0.15
ACGTcount: A:0.04, C:0.12, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTCATTTT
Found at i:24111842 original size:53 final size:53
Alignment explanation
Indices: 24111778--24111886 Score: 202
Period size: 53 Copynumber: 2.1 Consensus size: 53
24111768 TAAAAGTTAA
24111778 ATTATTTATTTTAAATCTTTTG-TCTTTCTAACTCTTTATTAAAAAGTCCCTTC
1 ATTATTTATTTTAAATCTTTTGCT-TTTCTAACTCTTTATTAAAAAGTCCCTTC
24111831 ATTATTTATTTTAAATCTTTTGCTTTTCTAACTCTTTATTAAAAAGTCCCTTC
1 ATTATTTATTTTAAATCTTTTGCTTTTCTAACTCTTTATTAAAAAGTCCCTTC
24111884 ATT
1 ATT
24111887 TATAAAAATA
Statistics
Matches: 55, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
53 54 0.98
54 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.04, T:0.53
Consensus pattern (53 bp):
ATTATTTATTTTAAATCTTTTGCTTTTCTAACTCTTTATTAAAAAGTCCCTTC
Found at i:24118632 original size:15 final size:16
Alignment explanation
Indices: 24118598--24118636 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
24118588 ATTTGAGATT
*
24118598 TGATTTTGAAATAAATA
1 TGATTATGAAAT-AATA
24118615 TGATTATGAAAT-ATA
1 TGATTATGAAATAATA
24118630 TGATTAT
1 TGATTAT
24118637 TGTAATACCC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 10 0.48
17 11 0.52
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.44
Consensus pattern (16 bp):
TGATTATGAAATAATA
Found at i:24137493 original size:6 final size:6
Alignment explanation
Indices: 24137482--24137507 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
24137472 AAGCATCATC
24137482 TCTTCA TCTTCA TCTTCA TCTTCA TC
1 TCTTCA TCTTCA TCTTCA TCTTCA TC
24137508 ACCATCTTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTTCA
Found at i:24137513 original size:18 final size:18
Alignment explanation
Indices: 24137482--24137516 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24137472 AAGCATCATC
**
24137482 TCTTCATCTTCATCTTCA
1 TCTTCATCACCATCTTCA
24137500 TCTTCATCACCATCTTC
1 TCTTCATCACCATCTTC
24137517 CTCAGAAGGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (18 bp):
TCTTCATCACCATCTTCA
Found at i:24138144 original size:22 final size:22
Alignment explanation
Indices: 24138118--24138161 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
24138108 TGTATATTTA
*
24138118 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
24138140 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
24138162 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:24138394 original size:25 final size:23
Alignment explanation
Indices: 24138309--24138393 Score: 125
Period size: 23 Copynumber: 3.6 Consensus size: 23
24138299 AAAATTTTCA
*
24138309 GCCTTCATTGCTGACCTTTTTAG
1 GCCTTCATTGCCGACCTTTTTAG
*
24138332 GCCTTCATTGCCGACGTTTTTAG
1 GCCTTCATTGCCGACCTTTTTAG
*
24138355 GCCTTCATTGCCGAATCCTGTTTAG
1 GCCTTCATTGCCG-A-CCTTTTTAG
24138380 GCCTTCATTGCCGA
1 GCCTTCATTGCCGA
24138394 ACCCTTTCAA
Statistics
Matches: 56, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
23 34 0.61
24 2 0.04
25 20 0.36
ACGTcount: A:0.14, C:0.28, G:0.20, T:0.38
Consensus pattern (23 bp):
GCCTTCATTGCCGACCTTTTTAG
Found at i:24142064 original size:22 final size:22
Alignment explanation
Indices: 24142038--24142081 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
24142028 TGTATATTTA
*
24142038 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
24142060 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
24142082 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:24144169 original size:21 final size:21
Alignment explanation
Indices: 24144144--24144209 Score: 105
Period size: 21 Copynumber: 3.1 Consensus size: 21
24144134 ATAAGTAAAA
24144144 TTTGATAATTTTTTATATAAT
1 TTTGATAATTTTTTATATAAT
* *
24144165 TTTGATAATTTATGATATAAT
1 TTTGATAATTTTTTATATAAT
*
24144186 TTTGATAATTTTTTATAAAAT
1 TTTGATAATTTTTTATATAAT
24144207 TTT
1 TTT
24144210 ACTAACCTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (21 bp):
TTTGATAATTTTTTATATAAT
Found at i:24144184 original size:12 final size:11
Alignment explanation
Indices: 24144144--24144192 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
24144134 ATAAGTAAAA
*
24144144 TTTGATA-ATT
1 TTTGATATAAT
*
24144154 TTTTATATAAT
1 TTTGATATAAT
24144165 TTTG--ATAAT
1 TTTGATATAAT
24144174 TTATGATATAAT
1 TT-TGATATAAT
24144186 TTTGATA
1 TTTGATA
24144193 ATTTTTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
9 7 0.22
10 8 0.25
11 10 0.31
12 7 0.22
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (11 bp):
TTTGATATAAT
Found at i:24144418 original size:22 final size:22
Alignment explanation
Indices: 24144377--24144678 Score: 166
Period size: 22 Copynumber: 13.8 Consensus size: 22
24144367 TAGAAAAATT
** *
24144377 TTATCAATGATCGACAATTAAA
1 TTATCAATGATTTACTATTAAA
* * *
24144399 TTATCATTGATTTATTATTATA
1 TTATCAATGATTTACTATTAAA
* *
24144421 TTATCAATAATTTACTACTAAA
1 TTATCAATGATTTACTATTAAA
* * *
24144443 CTATCAATGATATACTGTTAAA
1 TTATCAATGATTTACTATTAAA
*
24144465 TTATTAATGATTTACTATTAAA
1 TTATCAATGATTTACTATTAAA
* *
24144487 TTATCAATAATTTACTACTAAA
1 TTATCAATGATTTACTATTAAA
* * * *
24144509 TAATCAATAATTT-TTAACTAAA
1 TTATCAATGATTTACT-ATTAAA
* * * **
24144531 TTATGATTTATTTACTATTACG
1 TTATCAATGATTTACTATTAAA
*
24144553 TTAT-AACTGATTTACTACTAAA
1 TTATCAA-TGATTTACTATTAAA
* * *
24144575 TTATTAATGA-TTACTACTAAG
1 TTATCAATGATTTACTATTAAA
* * *
24144596 TTA-CTGATAATTTATTA-TAAA
1 TTATC-AATGATTTACTATTAAA
* *
24144617 GTTAT-AACTGATTTATTATTAAT
1 -TTATCAA-TGATTTACTATTAAA
** * **
24144640 TTATTGATGACTTACTACAAAA
1 TTATCAATGATTTACTATTAAA
* *
24144662 TTATCAATAATTAACTA
1 TTATCAATGATTTACTA
24144679 ATTTGCTACT
Statistics
Matches: 211, Mismatches: 58, Indels: 22
0.73 0.20 0.08
Matches are distributed among these distances:
21 22 0.10
22 182 0.86
23 7 0.03
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (22 bp):
TTATCAATGATTTACTATTAAA
Found at i:24144448 original size:44 final size:44
Alignment explanation
Indices: 24144395--24144678 Score: 184
Period size: 44 Copynumber: 6.5 Consensus size: 44
24144385 GATCGACAAT
* * *
24144395 TAAATTATCATTGATTTATTATTATATTATCAATAATTTACTAC
1 TAAATTATCAATGATTTACTATTAAATTATCAATAATTTACTAC
* * * * * *
24144439 TAAACTATCAATGATATACTGTTAAATTATTAATGATTTACTAT
1 TAAATTATCAATGATTTACTATTAAATTATCAATAATTTACTAC
* * * *
24144483 TAAATTATCAATAATTTACTACTAAATAATCAATAATTT-TTAAC
1 TAAATTATCAATGATTTACTATTAAATTATCAATAATTTACT-AC
* * * ** *
24144527 TAAATTATGATTTATTTACTATTACGTTAT-AACTGATTTACTAC
1 TAAATTATCAATGATTTACTATTAAATTATCAA-TAATTTACTAC
* * * * *
24144571 TAAATTATTAATGA-TTACTACTAAGTTA-CTGATAATTTATTA-
1 TAAATTATCAATGATTTACTATTAAATTATC-AATAATTTACTAC
* * ** * *
24144613 TAAAGTTAT-AACTGATTTATTATTAATTTATTGATGACTTACTAC
1 TAAA-TTATCAA-TGATTTACTATTAAATTATCAATAATTTACTAC
* * *
24144658 AAAATTATCAATAATTAACTA
1 TAAATTATCAATGATTTACTA
24144679 ATTTGCTACT
Statistics
Matches: 182, Mismatches: 47, Indels: 22
0.73 0.19 0.09
Matches are distributed among these distances:
42 6 0.03
43 30 0.16
44 140 0.77
45 6 0.03
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.45
Consensus pattern (44 bp):
TAAATTATCAATGATTTACTATTAAATTATCAATAATTTACTAC
Found at i:24144531 original size:66 final size:65
Alignment explanation
Indices: 24144395--24144594 Score: 190
Period size: 66 Copynumber: 3.0 Consensus size: 65
24144385 GATCGACAAT
* * * *
24144395 TAAATTATCATTGATTTATTATTATATTATCAATAATTTACTACTAAACTATCAATGATATACTG
1 TAAATTATCATTGATTTACTATTAAATTATCAATAATTTACTACTAAA-TATCAATAATATACTA
*
24144460 T
65 C
* * **
24144461 TAAATTATTAATGATTTACTATTAAATTATCAATAATTTACTACTAAATAATCAATAAT-TTTTA
1 TAAATTATCATTGATTTACTATTAAATTATCAATAATTTACTACTAAAT-ATCAATAATATACT-
24144525 AC
64 AC
* * ** * * *
24144527 TAAATTATGATTTATTTACTATTACGTTAT-AACTGATTTACTACTAAATTATTAATGAT-TACT
1 TAAATTATCATTGATTTACTATTAAATTATCAA-TAATTTACTACTAAA-TATCAATAATATACT
24144590 AC
64 AC
24144592 TAA
1 TAA
24144595 GTTACTGATA
Statistics
Matches: 111, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
65 10 0.09
66 100 0.90
67 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.04, T:0.45
Consensus pattern (65 bp):
TAAATTATCATTGATTTACTATTAAATTATCAATAATTTACTACTAAATATCAATAATATACTAC
Found at i:24144739 original size:22 final size:21
Alignment explanation
Indices: 24144712--24144818 Score: 74
Period size: 22 Copynumber: 4.9 Consensus size: 21
24144702 TTTACAATTA
*
24144712 AATTATTAGTGATTTATTACT
1 AATTATTAATGATTTATTACT
* *
24144733 AAGTTATTAATAATTTACGT-CT
1 AA-TTATTAATGATTTA-TTACT
* *
24144755 AAATTATTAATTATTTATTATT
1 -AATTATTAATGATTTATTACT
* *
24144777 GTATTATT-ATGTATTTACTACT
1 -AATTATTAATG-ATTTATTACT
*
24144799 ATATTATTATTGATTTATTA
1 A-ATTATTAATGATTTATTA
24144819 ATTAGTTTTC
Statistics
Matches: 65, Mismatches: 14, Indels: 13
0.71 0.15 0.14
Matches are distributed among these distances:
21 5 0.08
22 55 0.85
23 5 0.08
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.54
Consensus pattern (21 bp):
AATTATTAATGATTTATTACT
Found at i:24144774 original size:11 final size:10
Alignment explanation
Indices: 24144758--24144818 Score: 50
Period size: 11 Copynumber: 5.6 Consensus size: 10
24144748 TACGTCTAAA
24144758 TTATTAATTAT
1 TTATT-ATTAT
*
24144769 TTATTATTGT
1 TTATTATTAT
24144779 ATTATTATGTAT
1 -TTATTAT-TAT
* *
24144791 TTACTACTAT
1 TTATTATTAT
24144801 ATTATTATTGAT
1 -TTATTATT-AT
24144813 TTATTA
1 TTATTA
24144819 ATTAGTTTTC
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
10 7 0.17
11 29 0.73
12 4 0.10
ACGTcount: A:0.31, C:0.03, G:0.05, T:0.61
Consensus pattern (10 bp):
TTATTATTAT
Found at i:24144836 original size:44 final size:43
Alignment explanation
Indices: 24144699--24144840 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
24144689 GAATTATCAC
* * * * *
24144699 TTATTTACAATTAAATTATTAGTGATTTATTACTAAGTTATTAA
1 TTATTTACTACTAAATTATTATTGATTTATTAATTAGTT-TTAA
* *
24144743 TAATTTACGT-CTAAATTATTAATT-ATTTATT-ATT-GTATTATTA
1 TTATTTAC-TACTAAATTATT-ATTGATTTATTAATTAGT-TT-TAA
*
24144786 TGTATTTACTACTATATTATTATTGATTTATTAATTAGTTTTCAA
1 T-TATTTACTACTAAATTATTATTGATTTATTAATTAGTTTT-AA
24144831 TTATTTACTA
1 TTATTTACTA
24144841 TAAGACCATC
Statistics
Matches: 78, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
42 3 0.04
43 9 0.12
44 55 0.71
45 9 0.12
46 2 0.03
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (43 bp):
TTATTTACTACTAAATTATTATTGATTTATTAATTAGTTTTAA
Found at i:24144979 original size:10 final size:11
Alignment explanation
Indices: 24144960--24145040 Score: 53
Period size: 11 Copynumber: 7.5 Consensus size: 11
24144950 ATTGATGATT
24144960 AATTACTATTA
1 AATTACTATTA
24144971 AATTA-TATTA
1 AATTACTATTA
* *
24144981 ATTTACTTTTA
1 AATTACTATTA
24144992 AATT--T-TTA
1 AATTACTATTA
*
24145000 ATGATTAACTACTA
1 A--ATT-ACTATTA
* *
24145014 AATTATTATTG
1 AATTACTATTA
*
24145025 ACTTACTATTA
1 AATTACTATTA
24145036 AATTA
1 AATTA
24145041 TTTATGATTT
Statistics
Matches: 52, Mismatches: 11, Indels: 14
0.68 0.14 0.18
Matches are distributed among these distances:
8 4 0.08
9 1 0.02
10 12 0.23
11 28 0.54
12 3 0.06
13 1 0.02
14 3 0.06
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.49
Consensus pattern (11 bp):
AATTACTATTA
Found at i:24144992 original size:21 final size:20
Alignment explanation
Indices: 24144957--24145116 Score: 79
Period size: 22 Copynumber: 7.3 Consensus size: 20
24144947 GTTATTGATG
24144957 ATTAATTACTATTAAATTAT
1 ATTAATTACTATTAAATTAT
* *
24144977 ATTAATTTACTTTTAAATTTTT
1 ATTAA-TTACTATTAAA-TTAT
* * *
24144999 AATGATTAACTACTAAATTATT
1 ATTAATT-ACTATTAAATTA-T
*
24145021 ATTGACTTACTATTAAATTAT
1 ATT-AATTACTATTAAATTAT
*
24145042 -TTATGATTTACTACTAAATTTAT
1 ATTA--A-TTACTATTAAA-TTAT
* * *
24145065 CAATTAATTACGACTAAATTGAA
1 --ATTAATTACTATTAAATT-AT
* *
24145088 ATTGATTTACTATTAATTTAT
1 ATT-AATTACTATTAAATTAT
24145109 CATTAATT
1 -ATTAATT
24145117 TACAATTAAG
Statistics
Matches: 104, Mismatches: 21, Indels: 29
0.68 0.14 0.19
Matches are distributed among these distances:
19 1 0.01
20 7 0.07
21 22 0.21
22 53 0.51
23 17 0.16
24 1 0.01
26 3 0.03
ACGTcount: A:0.39, C:0.08, G:0.04, T:0.49
Consensus pattern (20 bp):
ATTAATTACTATTAAATTAT
Found at i:24145048 original size:44 final size:43
Alignment explanation
Indices: 24144941--24145061 Score: 127
Period size: 44 Copynumber: 2.7 Consensus size: 43
24144931 CTGTTAAAAT
* * * *
24144941 TATTAAGTTATTGATGATTAATTACTATTAAATTATATTAATTTAC
1 TATTAAATTATTTATGATT-A--ACTACTAAATTATATTAACTTAC
* *
24144987 TTTTAAATT-TTTAATGATTAACTACTAAATTATTATTGACTTAC
1 TATTAAATTATTT-ATGATTAACTACTAAATTA-TATTAACTTAC
*
24145031 TATTAAATTATTTATGATTTACTACTAAATT
1 TATTAAATTATTTATGATTAACTACTAAATT
24145062 TATCAATTAA
Statistics
Matches: 64, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
43 11 0.17
44 34 0.53
45 6 0.09
46 13 0.20
ACGTcount: A:0.38, C:0.07, G:0.05, T:0.50
Consensus pattern (43 bp):
TATTAAATTATTTATGATTAACTACTAAATTATATTAACTTAC
Found at i:24145098 original size:67 final size:65
Alignment explanation
Indices: 24144962--24145119 Score: 169
Period size: 67 Copynumber: 2.4 Consensus size: 65
24144952 TGATGATTAA
** * * * *
24144962 TTACTATTAAATTATATTAATTTACTTTTAAATTTTTAATGATTAACTACTAAATTATTATTGAC
1 TTACTATTAAATTATATTAATTTACTACTAAATTTTCAATAATTAACGACTAAATTATAATTGAC
24145027 TTACTATTAAATTAT-TTATGATTTACTACTAAATTTATCAATTAATT-ACGACTAAATTGA-AA
1 TTACTATTAAATTATATTA--ATTTACTACTAAATTT-TCAA-TAATTAACGACTAAATT-ATAA
*
24145089 TTGAT
61 TTGAC
*
24145094 TTACTATTAATTTATCATTAATTTAC
1 TTACTATTAAATTAT-ATTAATTTAC
24145120 AATTAAGTCA
Statistics
Matches: 78, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
64 3 0.04
65 15 0.19
66 14 0.18
67 38 0.49
68 5 0.06
69 3 0.04
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.49
Consensus pattern (65 bp):
TTACTATTAAATTATATTAATTTACTACTAAATTTTCAATAATTAACGACTAAATTATAATTGAC
Found at i:24145113 original size:11 final size:11
Alignment explanation
Indices: 24145099--24145154 Score: 51
Period size: 11 Copynumber: 5.1 Consensus size: 11
24145089 TTGATTTACT
24145099 ATTAATTTATC
1 ATTAATTTATC
24145110 ATTAATTTA-C
1 ATTAATTTATC
* *
24145120 AATTAAGTCATC
1 -ATTAATTTATC
* *
24145132 ATCAATTTATT
1 ATTAATTTATC
*
24145143 ATTAAGTTATC
1 ATTAATTTATC
24145154 A
1 A
24145155 ATTAGTTTTT
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
10 1 0.03
11 32 0.94
12 1 0.03
ACGTcount: A:0.39, C:0.11, G:0.04, T:0.46
Consensus pattern (11 bp):
ATTAATTTATC
Found at i:24145117 original size:22 final size:22
Alignment explanation
Indices: 24144957--24145154 Score: 77
Period size: 22 Copynumber: 9.0 Consensus size: 22
24144947 GTTATTGATG
*
24144957 ATTAA-TTACTATTAAATTAT-
1 ATTAATTTACTATTAATTTATC
* *
24144977 ATTAATTTACTTTTAAATTT-TT
1 ATTAATTTACTATT-AATTTATC
* * * * * *
24144999 AATGATTAACTACTAAATTATT
1 ATTAATTTACTATTAATTTATC
* * *
24145021 ATTGACTTACTATTAAATTAT-
1 ATTAATTTACTATTAATTTATC
*
24145042 -TTATGATTTACTACTAAATTTATC
1 ATTA--ATTTACTA-TTAATTTATC
* * * *
24145066 AATTAA-TTACGACTAAATTGA-A
1 -ATTAATTTACTA-TTAATTTATC
*
24145088 ATTGATTTACTATTAATTTATC
1 ATTAATTTACTATTAATTTATC
* * *
24145110 ATTAATTTACAATTAAGTCATC
1 ATTAATTTACTATTAATTTATC
* * *
24145132 ATCAATTTATTATTAAGTTATC
1 ATTAATTTACTATTAATTTATC
24145154 A
1 A
24145155 ATTAGTTTTT
Statistics
Matches: 134, Mismatches: 32, Indels: 22
0.71 0.17 0.12
Matches are distributed among these distances:
20 7 0.05
21 22 0.16
22 81 0.60
23 20 0.15
24 1 0.01
26 3 0.02
ACGTcount: A:0.39, C:0.09, G:0.04, T:0.47
Consensus pattern (22 bp):
ATTAATTTACTATTAATTTATC
Found at i:24145512 original size:22 final size:22
Alignment explanation
Indices: 24145487--24145551 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
24145477 CAATGATGTA
*
24145487 CTACTAATATT-TGAAGGATTTG
1 CTACTAAT-TTATAAAGGATTTG
*
24145509 CTACTAATTTATAAATGATTTG
1 CTACTAATTTATAAAGGATTTG
* * * *
24145531 CTATTAAGTTATGAATGATTT
1 CTACTAATTTATAAAGGATTT
24145552 ATTAATTATT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 2 0.05
22 35 0.95
ACGTcount: A:0.34, C:0.08, G:0.14, T:0.45
Consensus pattern (22 bp):
CTACTAATTTATAAAGGATTTG
Found at i:24145628 original size:21 final size:21
Alignment explanation
Indices: 24145602--24145641 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
24145592 TTTATTATAA
24145602 AATTAT-AACTAATTTACTACT
1 AATTATCAA-TAATTTACTACT
*
24145623 AATTATCGATAATTTACTA
1 AATTATCAATAATTTACTA
24145642 AAAAGTTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (21 bp):
AATTATCAATAATTTACTACT
Found at i:24145711 original size:22 final size:22
Alignment explanation
Indices: 24145652--24145712 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
24145642 AAAAGTTATC
* *
24145652 AATGATTAATAAATTTACTACTA
1 AATGATTACT-AATTTACAACTA
* *
24145675 AATGATTATTGATTTACAACTA
1 AATGATTACTAATTTACAACTA
* *
24145697 ATTTATTACTAATTTA
1 AATGATTACTAATTTA
24145713 TTTATCACAA
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 22 0.71
23 9 0.29
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.44
Consensus pattern (22 bp):
AATGATTACTAATTTACAACTA
Found at i:24145893 original size:22 final size:21
Alignment explanation
Indices: 24145868--24145940 Score: 85
Period size: 22 Copynumber: 3.3 Consensus size: 21
24145858 TCAATGAATA
24145868 ACTACTAAATTATCAATTATTT
1 ACTACTAAATTAT-AATTATTT
24145890 ACTACT-AATATATAATTGATTT
1 ACTACTAAAT-TATAATT-ATTT
* *
24145912 ACTACTAAATTTTTTATTATTT
1 ACTACTAAA-TTATAATTATTT
24145934 ACTACTA
1 ACTACTA
24145941 TCAATTAATT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
21 7 0.16
22 30 0.67
23 7 0.16
24 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.01, T:0.48
Consensus pattern (21 bp):
ACTACTAAATTATAATTATTT
Found at i:24145956 original size:24 final size:22
Alignment explanation
Indices: 24145868--24145956 Score: 58
Period size: 22 Copynumber: 4.0 Consensus size: 22
24145858 TCAATGAATA
* *
24145868 ACTACTAAATT-ATCAATTATTT
1 ACTACTAAATTAAT-TACTATTT
*
24145890 ACTACTAATATATAATT--GATTT
1 ACTACTAA-AT-TAATTACTATTT
** *
24145912 ACTACTAAATTTTTTATTATTT
1 ACTACTAAATTAATTACTATTT
24145934 ACTACTATCAATTAATTACTATT
1 ACTACTA--AATTAATTACTATT
24145957 AAACTGAAAC
Statistics
Matches: 52, Mismatches: 8, Indels: 12
0.72 0.11 0.17
Matches are distributed among these distances:
20 3 0.06
21 2 0.04
22 31 0.60
23 2 0.04
24 12 0.23
25 2 0.04
ACGTcount: A:0.38, C:0.12, G:0.01, T:0.48
Consensus pattern (22 bp):
ACTACTAAATTAATTACTATTT
Done.