Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 125 of 133
Found at i:24145996 original size:22 final size:22
Alignment explanation
Indices: 24145971--24146066 Score: 95
Period size: 22 Copynumber: 4.4 Consensus size: 22
24145961 TGAAACTGAC
*
24145971 TTATTATTAAGTTATCATTTAT
1 TTATTATTAAATTATCATTTAT
* *
24145993 TTATTATTAAATTATCAATAAT
1 TTATTATTAAATTATCATTTAT
* * *
24146015 TGACTATTAAATTATCACTTAT
1 TTATTATTAAATTATCATTTAT
* * *
24146037 TTGTTGTTAAATTATTC-TTGAT
1 TTATTATTAAATTA-TCATTTAT
24146059 TTATTATT
1 TTATTATT
24146067 CTACTATTAT
Statistics
Matches: 58, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 56 0.97
23 2 0.03
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.55
Consensus pattern (22 bp):
TTATTATTAAATTATCATTTAT
Found at i:24146196 original size:22 final size:22
Alignment explanation
Indices: 24146166--24146227 Score: 70
Period size: 22 Copynumber: 2.8 Consensus size: 22
24146156 AGTTTTCAAC
*
24146166 CATTAACTATTAAATTATCATT
1 CATTTACTATTAAATTATCATT
* * *
24146188 CATTTACTAGTACATTATTATT
1 CATTTACTATTAAATTATCATT
* *
24146210 AATTTACTATTAAGTTAT
1 CATTTACTATTAAATTAT
24146228 GATGATTCAT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.48
Consensus pattern (22 bp):
CATTTACTATTAAATTATCATT
Found at i:24146276 original size:21 final size:21
Alignment explanation
Indices: 24146213--24146289 Score: 81
Period size: 20 Copynumber: 3.8 Consensus size: 21
24146203 TATTATTAAT
*
24146213 TTAC-TATTAAGTTATGATGA
1 TTACATATTAAGTTATAATGA
*
24146233 TT-CATATTAAGTTATACTGA
1 TTACATATTAAGTTATAATGA
*
24146253 TTACAT-TTAAGTTTTCAATGA
1 TTACATATTAAGTTAT-AATGA
24146274 TTA-ATTATTAAGTTAT
1 TTACA-TATTAAGTTAT
24146290 TAATTATCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
19 1 0.02
20 27 0.57
21 11 0.23
22 8 0.17
ACGTcount: A:0.35, C:0.06, G:0.10, T:0.48
Consensus pattern (21 bp):
TTACATATTAAGTTATAATGA
Found at i:24149718 original size:18 final size:18
Alignment explanation
Indices: 24149695--24149729 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24149685 CTTTTTTTTT
*
24149695 AGTCTAATTATAAAAAAG
1 AGTCTAATAATAAAAAAG
24149713 AGTCTAATAATAAAAAA
1 AGTCTAATAATAAAAAA
24149730 ATTCATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.06, G:0.09, T:0.26
Consensus pattern (18 bp):
AGTCTAATAATAAAAAAG
Found at i:24150590 original size:16 final size:15
Alignment explanation
Indices: 24150564--24150593 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
24150554 CTTACTGACT
24150564 ACTAGATATATGCAA
1 ACTAGATATATGCAA
24150579 ACTAGCATATATGCA
1 ACTAG-ATATATGCA
24150594 CACACGAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.17, G:0.13, T:0.27
Consensus pattern (15 bp):
ACTAGATATATGCAA
Found at i:24151801 original size:18 final size:18
Alignment explanation
Indices: 24151778--24151812 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24151768 ACACTTTTTT
*
24151778 AGTTTAATTATAAAAAAG
1 AGTTTAATGATAAAAAAG
24151796 AGTTTAATGATAAAAAA
1 AGTTTAATGATAAAAAA
24151813 TTCATTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (18 bp):
AGTTTAATGATAAAAAAG
Found at i:24157735 original size:31 final size:30
Alignment explanation
Indices: 24157700--24157763 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
24157690 ATATTTAATA
*
24157700 ATTTATATTATTATATTATATAAAATATTA-T
1 ATTTATATTA-TATATTATA-AAAAAATTACT
*
24157731 ATTTATATTATATTTTATAAAAAAATTACT
1 ATTTATATTATATATTATAAAAAAATTACT
24157761 ATT
1 ATT
24157764 ATAAATCGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 8 0.27
30 12 0.40
31 10 0.33
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
ATTTATATTATATATTATAAAAAAATTACT
Found at i:24162011 original size:29 final size:29
Alignment explanation
Indices: 24161966--24162024 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
24161956 ATGCAAGTAG
* * *
24161966 TATTTTGCAAGAGAGATGCCTATGTGAAA
1 TATTTCGCAAGAAAGATACCTATGTGAAA
24161995 TATTTCGCAAGAAAGATACCTATGTGAAA
1 TATTTCGCAAGAAAGATACCTATGTGAAA
24162024 T
1 T
24162025 TGATCTTCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (29 bp):
TATTTCGCAAGAAAGATACCTATGTGAAA
Found at i:24165423 original size:30 final size:31
Alignment explanation
Indices: 24165365--24165424 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
24165355 TTTATATTAA
* *
24165365 AATTTAATTTTTAAATATTAGGTAAAATATG
1 AATTTAATTTTGAAATATCAGGTAAAATATG
*
24165396 AATTTAATTTTGAAATA-CAGTTAAAATAT
1 AATTTAATTTTGAAATATCAGGTAAAATAT
24165425 TACATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 10 0.38
31 16 0.62
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (31 bp):
AATTTAATTTTGAAATATCAGGTAAAATATG
Found at i:24167914 original size:21 final size:21
Alignment explanation
Indices: 24167852--24167917 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
24167842 GTGTATTTAT
24167852 ATATATAATGATAAAATAAT-AA
1 ATATATAAT--TAAAATAATAAA
* *
24167874 TTTTATAATTAAAATAATAAA
1 ATATATAATTAAAATAATAAA
24167895 ATATATATATTAAAAT-ATAAA
1 ATATATA-ATTAAAATAATAAA
24167916 AT
1 AT
24167918 TTCGATTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
20 9 0.24
21 14 0.37
22 15 0.39
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (21 bp):
ATATATAATTAAAATAATAAA
Found at i:24174383 original size:67 final size:67
Alignment explanation
Indices: 24174275--24174408 Score: 268
Period size: 67 Copynumber: 2.0 Consensus size: 67
24174265 CATAATGAAC
24174275 TATGATCCCTTATAATCTGCAGTCAGACTACAATCTCAAAAAAGCTGTGTTCTATCATATACAAT
1 TATGATCCCTTATAATCTGCAGTCAGACTACAATCTCAAAAAAGCTGTGTTCTATCATATACAAT
24174340 AA
66 AA
24174342 TATGATCCCTTATAATCTGCAGTCAGACTACAATCTCAAAAAAGCTGTGTTCTATCATATACAAT
1 TATGATCCCTTATAATCTGCAGTCAGACTACAATCTCAAAAAAGCTGTGTTCTATCATATACAAT
24174407 AA
66 AA
24174409 GATTGGAAGA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 67 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (67 bp):
TATGATCCCTTATAATCTGCAGTCAGACTACAATCTCAAAAAAGCTGTGTTCTATCATATACAAT
AA
Found at i:24178107 original size:2 final size:2
Alignment explanation
Indices: 24178096--24178133 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
24178086 ATCATCAAAG
*
24178096 TA TA TA -A TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24178134 CTTCAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24192803 original size:16 final size:16
Alignment explanation
Indices: 24192784--24192816 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24192774 TACAAAATGA
24192784 ATAAATTTAAACATTC
1 ATAAATTTAAACATTC
*
24192800 ATAAATTTAATCATTC
1 ATAAATTTAAACATTC
24192816 A
1 A
24192817 CGAATTCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (16 bp):
ATAAATTTAAACATTC
Found at i:24193350 original size:16 final size:16
Alignment explanation
Indices: 24193329--24193361 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
24193319 TATTAAGTCA
24193329 TAAATAATTAAATTCG
1 TAAATAATTAAATTCG
*
24193345 TAAATATTTAAATTCG
1 TAAATAATTAAATTCG
24193361 T
1 T
24193362 GCAACTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.42
Consensus pattern (16 bp):
TAAATAATTAAATTCG
Found at i:24193924 original size:6 final size:6
Alignment explanation
Indices: 24193906--24193955 Score: 55
Period size: 6 Copynumber: 8.2 Consensus size: 6
24193896 AAAATTAAAA
* * * *
24193906 ATAATA ATAATT ATTATT ATAATT ATAATT AAAAATT ATTATT ATAATT
1 ATAATT ATAATT ATAATT ATAATT ATAATT -ATAATT ATAATT ATAATT
24193955 A
1 A
24193956 CGATTAAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
6 31 0.86
7 5 0.14
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATAATT
Found at i:24193946 original size:25 final size:25
Alignment explanation
Indices: 24193906--24193965 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
24193896 AAAATTAAAA
*
24193906 ATAA-TAATAATTATTATTATAATT
1 ATAATTAAAAATTATTATTATAATT
24193930 ATAATTAAAAATTATTATTATAATT
1 ATAATTAAAAATTATTATTATAATT
**
24193955 ACGATTAAAAA
1 ATAATTAAAAA
24193966 ATAATAAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
24 4 0.12
25 28 0.88
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (25 bp):
ATAATTAAAAATTATTATTATAATT
Found at i:24193946 original size:28 final size:28
Alignment explanation
Indices: 24193882--24193950 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 28
24193872 ATTGACGGTG
* *
24193882 AAATTATTTTTAATAAAATTAAAAATAA
1 AAATTATTATTATTAAAATTAAAAATAA
* * * * *
24193910 TAATAATTATTATTATAATTATAATTAA
1 AAATTATTATTATTAAAATTAAAAATAA
24193938 AAATTATTATTAT
1 AAATTATTATTAT
24193951 AATTACGATT
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
AAATTATTATTATTAAAATTAAAAATAA
Found at i:24194351 original size:2 final size:2
Alignment explanation
Indices: 24194344--24194392 Score: 59
Period size: 2 Copynumber: 26.0 Consensus size: 2
24194334 ATGAACAAAT
* *
24194344 TA TA TA TA TA TA TA TA TA TA TA GA TA TA TA TA -A AA TA TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24194384 TA TA -A TA TA
1 TA TA TA TA TA
24194393 ACAACATATA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
1 3 0.07
2 38 0.93
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (2 bp):
TA
Found at i:24194576 original size:29 final size:29
Alignment explanation
Indices: 24194510--24194568 Score: 81
Period size: 27 Copynumber: 2.1 Consensus size: 29
24194500 ATTAGATAAT
24194510 TTTAAATT-T-ATTTAAATATCAAAATTA
1 TTTAAATTATAATTTAAATATCAAAATTA
24194537 TTTAAATTATAATTTAAA-ATC-AAATTAA
1 TTTAAATTATAATTTAAATATCAAAATT-A
24194565 TTTA
1 TTTA
24194569 GAGATATATT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
27 13 0.45
28 9 0.31
29 7 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.47
Consensus pattern (29 bp):
TTTAAATTATAATTTAAATATCAAAATTA
Found at i:24195949 original size:16 final size:16
Alignment explanation
Indices: 24195927--24195965 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
24195917 TACAAAATAA
24195927 ATAAATTTAAAT-ATTC
1 ATAAATTT-AATCATTC
*
24195943 ATGAATTTAATCATTC
1 ATAAATTTAATCATTC
24195959 ATAAATT
1 ATAAATT
24195966 CAATTGATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 3 0.15
16 17 0.85
ACGTcount: A:0.46, C:0.08, G:0.03, T:0.44
Consensus pattern (16 bp):
ATAAATTTAATCATTC
Found at i:24198261 original size:22 final size:22
Alignment explanation
Indices: 24198236--24198279 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
24198226 TTAGCTTCCT
24198236 TTTTAAGTTTAATTGCTTTTCA
1 TTTTAAGTTTAATTGCTTTTCA
24198258 TTTTAAGTTTAATTGCTTTTCA
1 TTTTAAGTTTAATTGCTTTTCA
24198280 AAAAAGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.09, T:0.59
Consensus pattern (22 bp):
TTTTAAGTTTAATTGCTTTTCA
Found at i:24204711 original size:2 final size:2
Alignment explanation
Indices: 24204704--24204729 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24204694 AATAAGGAAA
24204704 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
24204730 TTCCTCTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24207462 original size:13 final size:13
Alignment explanation
Indices: 24207444--24207468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24207434 TGAACCACAA
24207444 TTCTTTTTTCTTG
1 TTCTTTTTTCTTG
24207457 TTCTTTTTTCTT
1 TTCTTTTTTCTT
24207469 TCCTTCCCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.04, T:0.80
Consensus pattern (13 bp):
TTCTTTTTTCTTG
Found at i:24219367 original size:20 final size:20
Alignment explanation
Indices: 24219344--24219383 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
24219334 TTTTACATCC
24219344 AAAGATTTTTTACGTAAATT
1 AAAGATTTTTTACGTAAATT
24219364 AAAGATTTTTTACGTAAATT
1 AAAGATTTTTTACGTAAATT
24219384 TTAATATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (20 bp):
AAAGATTTTTTACGTAAATT
Found at i:24219446 original size:23 final size:21
Alignment explanation
Indices: 24219409--24219474 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
24219399 TTTTTTATGT
* *
24219409 TATTAATTATTTATTATTATC
1 TATTAATTATTTATTATGATA
24219430 TATTAATATAATTTATTATGATA
1 TATTAAT-T-ATTTATTATGATA
* *
24219453 TATT-ATTTTTATATTATTATA
1 TATTAATTATT-TATTATGATA
24219474 T
1 T
24219475 TTATTACTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
20 2 0.05
21 18 0.47
22 3 0.08
23 15 0.39
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TATTAATTATTTATTATGATA
Found at i:24219472 original size:14 final size:14
Alignment explanation
Indices: 24219394--24219478 Score: 50
Period size: 14 Copynumber: 5.9 Consensus size: 14
24219384 TTAATATATT
* *
24219394 TTATTTTTTTTATG
1 TTATTATTTTTATA
*
24219408 TTATTAATTATT-TA
1 TTATT-ATTTTTATA
*
24219422 TTATTATCTATTA-A
1 TTATTAT-TTTTATA
*
24219436 -TATAATTTATTATGA
1 TTATTATTT-TTAT-A
24219451 TATATTATTTTTATA
1 T-TATTATTTTTATA
*
24219466 TTATTATATTTAT
1 TTATTATTTTTAT
24219479 TACTTCAGTC
Statistics
Matches: 56, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
12 1 0.02
13 10 0.18
14 27 0.48
15 7 0.12
16 4 0.07
17 7 0.12
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (14 bp):
TTATTATTTTTATA
Found at i:24220481 original size:24 final size:23
Alignment explanation
Indices: 24220454--24220520 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 23
24220444 GAGATTAAAA
24220454 ATAATAATAAAAATTATTATAATT
1 ATAATAA-AAAAATTATTATAATT
24220478 ATAATTTTAAAAAAAATTATTATAATT
1 ATAA---T-AAAAAAATTATTATAATT
*
24220505 ATGATTAAAAAAATTA
1 AT-AATAAAAAAATTA
24220521 ATAAAAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
24 14 0.38
25 1 0.03
27 19 0.51
28 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (23 bp):
ATAATAAAAAAATTATTATAATT
Found at i:24220516 original size:27 final size:27
Alignment explanation
Indices: 24220462--24220517 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
24220452 AAATAATAAT
**
24220462 AAAAATTATTATAATTATAATTTTAAA
1 AAAAATTATTATAATTATAATTAAAAA
*
24220489 AAAAATTATTATAATTATGATTAAAAA
1 AAAAATTATTATAATTATAATTAAAAA
24220516 AA
1 AA
24220518 TTAATAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (27 bp):
AAAAATTATTATAATTATAATTAAAAA
Found at i:24223489 original size:140 final size:140
Alignment explanation
Indices: 24223234--24223509 Score: 333
Period size: 140 Copynumber: 2.0 Consensus size: 140
24223224 AATTTCAATC
* *
24223234 AAAAATTTATGTTGAATGGACTTCACTAGAATAGTCATTTGGATTCAATCGATAATGTGATAAGC
1 AAAAATTTATGCTGAATGGACTTCACTAGAATAGTCATTTGGATTCAATCGATAATGTGATAAAC
** * * **
24223299 TCAATCCGGTGCAGTGGCATTAAAATTTAGTCTAAAAAAGCATCGGATTTAATGGATGAGTTGAG
66 TCAATCCGGTGCAGTGAAATCAAAATTAAGTCTAAAAAAGCATCAAATTTAATGGATGAGTTGAG
24223364 ATTGCTACAG
131 ATTGCTACAG
* * * * **
24223374 AAAAATTTATGCTGAATGGATTTCACTAGAGTAAG-CATTTGGATTTAATTGATGGTGTGATAAA
1 AAAAATTTATGCTGAATGGACTTCACTAGAAT-AGTCATTTGGATTCAATCGATAATGTGATAAA
* * * * *
24223438 TTCAATTCGGTG-TGATGAAATGCAAACTTAAG-CTAAATAAGCATCAAATTTAATGGATGAGTT
65 CTCAATCCGGTGCAG-TGAAAT-CAAAATTAAGTCTAAAAAAGCATCAAATTTAATGGATGAGTT
24223501 GAGATTGCT
128 GAGATTGCT
24223510 GCTGGGTCAT
Statistics
Matches: 114, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
139 1 0.01
140 104 0.91
141 9 0.08
ACGTcount: A:0.36, C:0.11, G:0.21, T:0.33
Consensus pattern (140 bp):
AAAAATTTATGCTGAATGGACTTCACTAGAATAGTCATTTGGATTCAATCGATAATGTGATAAAC
TCAATCCGGTGCAGTGAAATCAAAATTAAGTCTAAAAAAGCATCAAATTTAATGGATGAGTTGAG
ATTGCTACAG
Found at i:24224127 original size:29 final size:28
Alignment explanation
Indices: 24224088--24224150 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
24224078 AATAGTAATT
*
24224088 AAAATTATTGTAACTACGATTGAAAAAAA
1 AAAATTATTGTAACTACAATT-AAAAAAA
* *
24224117 AAAGTTATTGTAGCTACAATTAAAAAAA
1 AAAATTATTGTAACTACAATTAAAAAAA
24224145 AAAATT
1 AAAATT
24224151 CAATGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 12 0.40
29 18 0.60
ACGTcount: A:0.56, C:0.06, G:0.10, T:0.29
Consensus pattern (28 bp):
AAAATTATTGTAACTACAATTAAAAAAA
Found at i:24232103 original size:2 final size:2
Alignment explanation
Indices: 24232090--24232122 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
24232080 ATGACAATAA
*
24232090 AC AC AA AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
24232123 AAAAGATGTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.55, C:0.45, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:24232249 original size:2 final size:2
Alignment explanation
Indices: 24232242--24232277 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
24232232 GTCATCATAA
*
24232242 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24232278 TACTATGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24235222 original size:6 final size:6
Alignment explanation
Indices: 24235213--24235244 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
24235203 TAAATTTAAC
24235213 AAAATA AAAATA AAAAT- AAAAT- AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
24235245 CAAGAGAGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:24235469 original size:2 final size:2
Alignment explanation
Indices: 24235462--24235492 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24235452 GTGAGACTGC
24235462 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
24235493 GCAGCTGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:24236326 original size:18 final size:18
Alignment explanation
Indices: 24236303--24236340 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
24236293 TTAAATTTGT
*
24236303 TTAATTATAATTTATTTA
1 TTAATTATAAATTATTTA
24236321 TTAATTATAAATTATTTA
1 TTAATTATAAATTATTTA
24236339 TT
1 TT
24236341 TATATATGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTAATTATAAATTATTTA
Found at i:24237312 original size:20 final size:22
Alignment explanation
Indices: 24237259--24237312 Score: 53
Period size: 20 Copynumber: 2.6 Consensus size: 22
24237249 ATAACTTAAA
24237259 ATTTTATATAAATTATTCCAATT
1 ATTTTATATAAATTATT-CAATT
* *
24237282 -TTTT-TACAAATT-TT-TATT
1 ATTTTATATAAATTATTCAATT
24237300 ATTTTATATAAAT
1 ATTTTATATAAAT
24237313 GGAAAATATT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
18 3 0.12
19 4 0.15
20 8 0.31
21 7 0.27
22 4 0.15
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTATATAAATTATTCAATT
Found at i:24238025 original size:12 final size:12
Alignment explanation
Indices: 24238004--24238034 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
24237994 TTTATAATTT
*
24238004 TTTTAATTTTAA
1 TTTTATTTTTAA
24238016 TTTTATTTTTAA
1 TTTTATTTTTAA
24238028 TTTTATT
1 TTTTATT
24238035 ATTGTATCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTATTTTTAA
Found at i:24239489 original size:15 final size:16
Alignment explanation
Indices: 24239456--24239497 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
24239446 ATATAATATA
24239456 AAAAATAAAATAAAAT
1 AAAAATAAAATAAAAT
***
24239472 -AAAATAAAATATTTT
1 AAAAATAAAATAAAAT
24239487 AAAAATAAAAT
1 AAAAATAAAAT
24239498 TTATATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATAAAATAAAAT
Found at i:24239497 original size:5 final size:5
Alignment explanation
Indices: 24239457--24239482 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
24239447 TATAATATAA
24239457 AAAAT AAAAT AAAAT AAAAT AAAAT A
1 AAAAT AAAAT AAAAT AAAAT AAAAT A
24239483 TTTTAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:24245575 original size:17 final size:17
Alignment explanation
Indices: 24245553--24245585 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24245543 CATTATTTCT
24245553 CTTTATTTTCTTTTATG
1 CTTTATTTTCTTTTATG
*
24245570 CTTTATTTTGTTTTAT
1 CTTTATTTTCTTTTAT
24245586 TTTCTTGGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.73
Consensus pattern (17 bp):
CTTTATTTTCTTTTATG
Found at i:24255959 original size:38 final size:38
Alignment explanation
Indices: 24255917--24255995 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
24255907 GAATATTGTT
24255917 CAAAAGGTGGTAGAATATGTTCATATTCATATCATCTC
1 CAAAAGGTGGTAGAATATGTTCATATTCATATCATCTC
*
24255955 CAAAAGGTGGTAGAATATGTTCATATTCATATCATTTC
1 CAAAAGGTGGTAGAATATGTTCATATTCATATCATCTC
24255993 CAA
1 CAA
24255996 TAAGCATGTA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.34
Consensus pattern (38 bp):
CAAAAGGTGGTAGAATATGTTCATATTCATATCATCTC
Found at i:24261030 original size:16 final size:17
Alignment explanation
Indices: 24261002--24261043 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
24260992 ATTTTTTTAT
24261002 ATTAAAAATAAATTAAA
1 ATTAAAAATAAATTAAA
**
24261019 ATTAAAAA-AAATTACG
1 ATTAAAAATAAATTAAA
24261035 ATTAAAAAT
1 ATTAAAAAT
24261044 CGAACTACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
ATTAAAAATAAATTAAA
Found at i:24270831 original size:12 final size:12
Alignment explanation
Indices: 24270814--24270838 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24270804 GAAACGTACC
24270814 TTCTTTTTTTTT
1 TTCTTTTTTTTT
24270826 TTCTTTTTTTTT
1 TTCTTTTTTTTT
24270838 T
1 T
24270839 GTGTTTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:24271101 original size:31 final size:31
Alignment explanation
Indices: 24271061--24271128 Score: 109
Period size: 31 Copynumber: 2.2 Consensus size: 31
24271051 TTAAGCGGTT
*
24271061 TTAATTTTCTCAAATCTTACATCACAAATTA
1 TTAAATTTCTCAAATCTTACATCACAAATTA
* *
24271092 TTAAATTTCTCAAGTCTTACATCACAAGTTA
1 TTAAATTTCTCAAATCTTACATCACAAATTA
24271123 TTAAAT
1 TTAAAT
24271129 GTGATATCCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (31 bp):
TTAAATTTCTCAAATCTTACATCACAAATTA
Found at i:24272645 original size:26 final size:24
Alignment explanation
Indices: 24272608--24272664 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 24
24272598 AACTTAAATG
*
24272608 AATATTTAAATAAATTCGGATATTATA
1 AATA-TTAAATAAATTCGAATA-TA-A
24272635 AATATTAAATAAATTCGAATATAA
1 AATATTAAATAAATTCGAATATAA
24272659 AATATT
1 AATATT
24272665 TTTAAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.24
25 2 0.07
26 16 0.55
27 4 0.14
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.39
Consensus pattern (24 bp):
AATATTAAATAAATTCGAATATAA
Found at i:24275002 original size:16 final size:15
Alignment explanation
Indices: 24274985--24275039 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 15
24274975 TAATTTTTTA
24274985 TTTATATAATTATAT
1 TTTATATAATTATAT
* *
24275000 ATTTAAATATTTATAT
1 -TTTATATAATTATAT
* *
24275016 TTTA-AAAATAATAT
1 TTTATATAATTATAT
24275030 TTTAT-TAATT
1 TTTATATAATT
24275040 TCGAATCGAA
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
14 14 0.45
15 4 0.13
16 13 0.42
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTATATAATTATAT
Found at i:24282860 original size:14 final size:14
Alignment explanation
Indices: 24282819--24282861 Score: 54
Period size: 12 Copynumber: 3.1 Consensus size: 14
24282809 AATTATTTTA
24282819 TTAAATGTATAAATT
1 TTAAAT-TATAAATT
*
24282834 TTAAA--ATATATT
1 TTAAATTATAAATT
24282846 TTAAATTATAAATT
1 TTAAATTATAAATT
24282860 TT
1 TT
24282862 TTCATGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
12 11 0.46
14 8 0.33
15 5 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (14 bp):
TTAAATTATAAATT
Found at i:24285892 original size:32 final size:32
Alignment explanation
Indices: 24285851--24285914 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
24285841 AACCAAAATA
* *
24285851 TGAATGAACTTTACCATGTTCTTGATGTGTTC
1 TGAATGAACTTTACCAGGCTCTTGATGTGTTC
*
24285883 TGAATGAACTTTACTAGGCTCTTGATGTGTTC
1 TGAATGAACTTTACCAGGCTCTTGATGTGTTC
24285915 ATTTAGATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (32 bp):
TGAATGAACTTTACCAGGCTCTTGATGTGTTC
Found at i:24291225 original size:29 final size:29
Alignment explanation
Indices: 24291183--24291255 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 29
24291173 AATTAATAAA
*
24291183 TTTATAATTTAAATAAAATATT-AATGATT
1 TTTAAAATTTAAATAAAATATTAAAT-ATT
*
24291212 TTTAAAATTTAAATATAATATTAAATATT
1 TTTAAAATTTAAATAAAATATTAAATATT
24291241 TTATAATAATTTAAA
1 TT-TAA-AATTTAAA
24291256 AAATTAAAGA
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
29 25 0.64
30 6 0.15
31 8 0.21
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (29 bp):
TTTAAAATTTAAATAAAATATTAAATATT
Found at i:24291507 original size:10 final size:10
Alignment explanation
Indices: 24291485--24291514 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24291475 TATTTTATAA
24291485 ATTAAAATA-
1 ATTAAAATAT
24291494 ATTAAAATAT
1 ATTAAAATAT
24291504 ATTAAAATAT
1 ATTAAAATAT
24291514 A
1 A
24291515 AAAATTTTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:24298019 original size:15 final size:16
Alignment explanation
Indices: 24297998--24298036 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
24297988 TTAAAATAGT
24297998 AATATTTATT-AATAA
1 AATATTTATTCAATAA
* *
24298013 TATATTTATTCTATAA
1 AATATTTATTCAATAA
24298029 AATATTTA
1 AATATTTA
24298037 CATTTTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 9 0.45
16 11 0.55
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (16 bp):
AATATTTATTCAATAA
Found at i:24298286 original size:26 final size:26
Alignment explanation
Indices: 24298257--24298316 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
24298247 AATATAATAT
24298257 TATTATTTATTAGTAAAATAATAAAA
1 TATTATTTATTAGTAAAATAATAAAA
* * *
24298283 TATTATTTATTATTGAAATATTAAAA
1 TATTATTTATTAGTAAAATAATAAAA
24298309 -A-TATTTAT
1 TATTATTTAT
24298317 GTTTAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 7 0.23
25 1 0.03
26 23 0.74
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (26 bp):
TATTATTTATTAGTAAAATAATAAAA
Found at i:24299169 original size:39 final size:42
Alignment explanation
Indices: 24299126--24299235 Score: 111
Period size: 42 Copynumber: 2.6 Consensus size: 42
24299116 GAAGATATAC
* *
24299126 AACAACATCAAAAACATCAAGAAGAAG-GAGA-AG-AACAGA
1 AACAACAACAAAAACATCAAGAAGAAGAGAAACAGCAACAGA
*
24299165 AACAACAACAACAACACCATCAAGATGAAGAGAAACAGCAACAGA
1 AACAACAACAA-AA-A-CATCAAGAAGAAGAGAAACAGCAACAGA
* *
24299210 AACAGCAACAGAAAA-AGCAAGAAGAA
1 AACAACAACA-AAAACATCAAGAAGAA
24299236 AAACATAAAC
Statistics
Matches: 58, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
39 10 0.17
40 2 0.03
41 1 0.02
42 21 0.36
43 3 0.05
44 3 0.05
45 17 0.29
46 1 0.02
ACGTcount: A:0.61, C:0.19, G:0.16, T:0.04
Consensus pattern (42 bp):
AACAACAACAAAAACATCAAGAAGAAGAGAAACAGCAACAGA
Found at i:24299212 original size:12 final size:12
Alignment explanation
Indices: 24299195--24299229 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
24299185 CAAGATGAAG
24299195 AGAAACAGCAAC
1 AGAAACAGCAAC
24299207 AGAAACAGCAAC
1 AGAAACAGCAAC
*
24299219 AGAAAAAGCAA
1 AGAAACAGCAA
24299230 GAAGAAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.63, C:0.20, G:0.17, T:0.00
Consensus pattern (12 bp):
AGAAACAGCAAC
Found at i:24301104 original size:13 final size:13
Alignment explanation
Indices: 24301086--24301124 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
24301076 TTTATTCTTC
24301086 ATATTGACATGAT
1 ATATTGACATGAT
24301099 ATATTGACATGAT
1 ATATTGACATGAT
24301112 ATATTGACATGAT
1 ATATTGACATGAT
24301125 TAATCTATCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.15, T:0.38
Consensus pattern (13 bp):
ATATTGACATGAT
Found at i:24304388 original size:27 final size:27
Alignment explanation
Indices: 24304358--24304433 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
24304348 ATATTTTATA
24304358 AATTTTAAATAAAATAAAATAAAATAT
1 AATTTTAAATAAAATAAAATAAAATAT
* * * * *
24304385 AATTTTATATAACATCAAATCAAATTT
1 AATTTTAAATAAAATAAAATAAAATAT
*
24304412 AATATT-AA-AAAATAAAA-AAAAT
1 AATTTTAAATAAAATAAAATAAAAT
24304434 CCAATCAAAT
Statistics
Matches: 39, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
24 4 0.10
25 7 0.18
26 1 0.03
27 27 0.69
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (27 bp):
AATTTTAAATAAAATAAAATAAAATAT
Found at i:24304681 original size:4 final size:4
Alignment explanation
Indices: 24304672--24304697 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
24304662 CAAGAACAAC
24304672 TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TT
24304698 TGGGTTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTAT
Found at i:24307937 original size:60 final size:59
Alignment explanation
Indices: 24307870--24308151 Score: 345
Period size: 60 Copynumber: 4.8 Consensus size: 59
24307860 TGTTTTTATA
* * *
24307870 CAAGAAAAATTGATACTTTTAACTTTTCCTTAAAAATGTTTTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAAT-TTTTTTTTGAAAATTTTATTTT
* * * *
24307930 CAAGAAAAATTGATACTATCAACTTTTTCTTAAAAATGTTTTTTTCAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATTTTTTTTTGAAAATTTTATTTT
* * **
24307989 CAAGAAAAATTAATACTTTCAATTTTTTCTCAAAAATCCCTTTTTTG-AAATCTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAAT-TTTTTTTTGAAAAT-TTTATTTT
* * *
24308049 CAAGTAAAATTGATACTTTCAATTTTTTCTGAACAATTTTTTTTTGAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATTTTTTTTTGAAAATTTTATTTT
* * * *
24308108 TAA-AAAAATTGATATTTTTAA-TTTTTCTTTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAATTTTTTC-TTAAAAATTTTTTTTT
24308152 CAAGGAAAAT
Statistics
Matches: 193, Mismatches: 25, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
57 6 0.03
58 28 0.15
59 74 0.38
60 85 0.44
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.50
Consensus pattern (59 bp):
CAAGAAAAATTGATACTTTCAATTTTTTCTTAAAAATTTTTTTTTGAAAATTTTATTTT
Found at i:24307998 original size:119 final size:118
Alignment explanation
Indices: 24307870--24308151 Score: 361
Period size: 119 Copynumber: 2.4 Consensus size: 118
24307860 TGTTTTTATA
*
24307870 CAAGAAAAATTGATACTTTTAACTTTTCCTTAAAAATGTTTTTTTTGAAAAT-TTTATTTTCAAG
1 CAAGAAAAATTGATACTTTTAATTTTTCCTTAAAAAT-TTTTTTTTG-AAATCTTTATTTTCAAG
*
24307934 AAAAATTGATACTATCAACTTTTTCTTAAAAATGTTTTTTTCAAAATTTTATTTT
64 AAAAATTGATACTATCAACTTTTTCTGAAAAATGTTTTTTTCAAAATTTTATTTT
* * * * ** *
24307989 CAAGAAAAATTAATACTTTCAATTTTTTCTCAAAAATCCCTTTTTTGAAATCTTTATTTTCAAGT
1 CAAGAAAAATTGATACTTTTAATTTTTCCTTAAAAAT-TTTTTTTTGAAATCTTTATTTTCAAGA
* * * * *
24308054 AAAATTGATACTTTCAATTTTTTCTGAACAATTTTTTTTTGAAAATTTTATTTT
65 AAAATTGATACTATCAACTTTTTCTGAAAAATGTTTTTTTCAAAATTTTATTTT
* * * *
24308108 TAA-AAAAATTGATATTTTTAATTTTTCTTTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTTAATTTTTCCTTAAAAATTTTTTTTT
24308152 CAAGGAAAAT
Statistics
Matches: 137, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
117 5 0.04
118 31 0.23
119 101 0.74
ACGTcount: A:0.35, C:0.09, G:0.05, T:0.50
Consensus pattern (118 bp):
CAAGAAAAATTGATACTTTTAATTTTTCCTTAAAAATTTTTTTTTGAAATCTTTATTTTCAAGAA
AAATTGATACTATCAACTTTTTCTGAAAAATGTTTTTTTCAAAATTTTATTTT
Found at i:24308107 original size:15 final size:14
Alignment explanation
Indices: 24308071--24308112 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 14
24308061 ATACTTTCAA
*
24308071 TTTTTTCTGAACAAT
1 TTTTTTTTGAA-AAT
24308086 TTTTTTTTGAAAAT
1 TTTTTTTTGAAAAT
24308100 TTTATTTTT-AAAA
1 TTT-TTTTTGAAAA
24308113 AAATTGATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.60
Consensus pattern (14 bp):
TTTTTTTTGAAAAT
Found at i:24308149 original size:103 final size:105
Alignment explanation
Indices: 24308036--24308360 Score: 310
Period size: 105 Copynumber: 3.0 Consensus size: 105
24308026 CCCTTTTTTG
* * *
24308036 AAATCTTTATTTTCAAGTAAAATTGATACTTTCAA-TTTTT-TCTGAACAAT-TTTTTTTTGAAA
1 AAATCTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCT-AAAAATACTTTTTTT-AAA
* * * *
24308098 ATTTTATTTTT-AAAAAAATTGATATTTTTAATTTTTCTTTAA
64 ATTTT-TTTTTAAAAAAAATTGATACTTTCAACTTTTCTTAAA
24308140 AAAT-TTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTTTTTTAAAAT
1 AAATCTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTTTTTTAAAAT
24308204 TTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAA
66 TTTTTTTT-AAAAAAAATTGATACTTTCAACTTTTCTTAAA
* *
24308245 AAATACCTTTTTTGAAATTTTATCTAAGAAAAATTGATA-TTGTTAAC-TTTTCTC-AAAAA-AC
1 AAAT--C---TTT---A-TTT-TC-AAGGAAAATTGATACTT-TCAACTTTTTCTCTAAAAATAC
* *
24308306 TTTTTTTGAAATTTTTATTTT-AAAAAAATTGATATTTTCAACTTTTTCTCTAAA
54 TTTTTTTAAAATTTTT-TTTTAAAAAAAATTGATACTTTCAAC-TTTTCT-TAAA
24308360 A
1 A
24308361 TACATTTTTT
Statistics
Matches: 189, Mismatches: 11, Indels: 31
0.82 0.05 0.13
Matches are distributed among these distances:
103 34 0.18
104 22 0.12
105 41 0.22
111 3 0.02
113 20 0.11
114 24 0.13
115 17 0.09
116 11 0.06
117 17 0.09
ACGTcount: A:0.37, C:0.09, G:0.05, T:0.50
Consensus pattern (105 bp):
AAATCTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTTTTTTAAAAT
TTTTTTTTAAAAAAAATTGATACTTTCAACTTTTCTTAAA
Found at i:24308212 original size:60 final size:60
Alignment explanation
Indices: 24308130--24308439 Score: 324
Period size: 60 Copynumber: 5.3 Consensus size: 60
24308120 TATTTTTAAT
* **
24308130 TTTTCTTTAAAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCTAAAAATAC
1 TTTT-TTT-AAAATTTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTTCTCTAAAAATAC
24308192 TTTTTTTAAAATTTTTTTTTCAAAAAAAATTGATACTTTCAAC-TTTTCT-TAAAAAATAC
1 TTTTTTTAAAATTTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTTCTCT-AAAAATAC
* * * * * *
24308251 CTTTTTTGAAA-TTTTATCT-AAGAAAAATTGATA-TTGTTAAC-TTTTCTC-AAAAA-AC
1 TTTTTTTAAAATTTTTTTTTCAAAAAAAATTGATACTT-TCAACTTTTTCTCTAAAAATAC
* *
24308306 TTTTTTTGAAATTTTTATTTT--AAAAAAATTGATATTTTCAACTTTTTCTCT-AAAATAC
1 TTTTTTTAAAATTTTT-TTTTCAAAAAAAATTGATACTTTCAACTTTTTCTCTAAAAATAC
* *
24308364 ATTTTTTTCAAATTTTTTATTTTCAAAAAAAATTGATACTTTCAACTTTTCCTC-AAAAAT--
1 -TTTTTTT-AAAATTTTT-TTTTCAAAAAAAATTGATACTTTCAACTTTTTCTCTAAAAATAC
*
24308424 TTTTTTTGAAATTTTT
1 TTTTTTTAAAATTTTT
24308440 ATTAAAATTT
Statistics
Matches: 214, Mismatches: 20, Indels: 32
0.80 0.08 0.12
Matches are distributed among these distances:
55 12 0.06
56 27 0.13
57 38 0.18
58 16 0.07
59 37 0.17
60 45 0.21
61 3 0.01
62 36 0.17
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.50
Consensus pattern (60 bp):
TTTTTTTAAAATTTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTTCTCTAAAAATAC
Found at i:24308265 original size:163 final size:160
Alignment explanation
Indices: 24307968--24308438 Score: 491
Period size: 163 Copynumber: 2.8 Consensus size: 160
24307958 CTTAAAAATG
* * * * *
24307968 TTTT-TTTCAAAATTTTATTTTCAAGAAAAATTAATACTTTCAATTTTTTCTC-AAAAATCCCTT
1 TTTTCTTTAAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTT
* * ** * * * *
24308031 TTTTGAAATCTTTATTTTCAAGTAAAATTGATACTTTCAATTTTTTCTGAACAATTTTTTTTTGA
66 TTTTAAAAT-TTTTTTTTCAAAAAAAATTGATACTTTCAA-CTTTTCTTAAAAAATTTTTTTTG-
* * *
24308096 AAATTTTATTTTTAA-AAAAATTGATATTTTTAAT
128 AAATTTTA--TCTAAGAAAAATTGATATTGTTAAC
*
24308130 TTTTCTTTAAAAATTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTT
1 TTTTCTTTAAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTT
*
24308195 TTTTAAAATTTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAAAAATACCTTTTTTGA
66 TTTTAAAATTTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAAAAAT--TTTTTTTGA
24308260 AATTTTATCTAAGAAAAATTGATATTGTTAAC
129 AATTTTATCTAAGAAAAATTGATATTGTTAAC
** * * *
24308292 TTTTCTCAAAAAACTTTTTTTGAAATTTTTATTTTAAAAAAATTGATATTTTCAACTTTTTCTCT
1 TTTTCTTTAAAAA----TTTT---ATTTTCA----AGAAAAATTGATACTTTCAACTTTTTCTCT
* * *
24308357 -AAAATACATTTTTTTCAAATTTTTTATTTTCAAAAAAAATTGATACTTTCAACTTTTCCTCAAA
55 AAAAATAC-TTTTTTT-AAAATTTTT-TTTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAAA
24308421 AATTTTTTTTGAAATTTT
117 AATTTTTTTTGAAATTTT
24308439 TATTAAAATT
Statistics
Matches: 262, Mismatches: 28, Indels: 27
0.83 0.09 0.09
Matches are distributed among these distances:
161 4 0.02
162 43 0.16
163 79 0.30
164 24 0.09
166 4 0.02
169 6 0.02
172 7 0.03
173 48 0.18
174 8 0.03
175 39 0.15
ACGTcount: A:0.35, C:0.10, G:0.04, T:0.50
Consensus pattern (160 bp):
TTTTCTTTAAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTT
TTTTAAAATTTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAAAAATTTTTTTTGAAA
TTTTATCTAAGAAAAATTGATATTGTTAAC
Found at i:24308277 original size:59 final size:58
Alignment explanation
Indices: 24308143--24308442 Score: 328
Period size: 59 Copynumber: 5.1 Consensus size: 58
24308133 TCTTTAAAAA
** *
24308143 TTTTATTTTCAAGGAAAATTGATACTTTCAACTTTTTCTCTAAAAATACTTTTTTTAAAAT
1 TTTTA-TTTCAAAAAAAATTGATACTTTCAAC-TTTTCT-TAAAAATACTTTTTTTGAAAT
* *
24308204 TTTTTTTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAAAAATACCTTTTTTGAAA-
1 TTTTATTTCAAAAAAAATTGATACTTTCAACTTTTCTT-AAAAATACTTTTTTTGAAAT
* * * *
24308262 TTTTATCT-AAGAAAAATTGATA-TTGTTAACTTTTCTCAAAAA-ACTTTTTTTGAAAT
1 TTTTATTTCAAAAAAAATTGATACTT-TCAACTTTTCTTAAAAATACTTTTTTTGAAAT
* * *
24308318 TTTTATTT-TAAAAAAATTGATATTTTCAACTTTTTCTCT-AAAATACATTTTTTTCAAATT
1 TTTTATTTCAAAAAAAATTGATACTTTCAAC-TTTTCT-TAAAAATAC-TTTTTTTGAAA-T
*
24308378 TTTTATTTTCAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAAT--TTTTTTTGAAAT
1 TTTTA-TTTCAAAAAAAATTGATACTTTCAACTTTT-CTTAAAAATACTTTTTTTGAAAT
24308436 TTTTATT
1 TTTTATT
24308443 AAAATTTTAT
Statistics
Matches: 205, Mismatches: 21, Indels: 30
0.80 0.08 0.12
Matches are distributed among these distances:
55 12 0.06
56 30 0.15
57 37 0.18
58 15 0.07
59 43 0.21
60 30 0.15
61 11 0.05
62 27 0.13
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.50
Consensus pattern (58 bp):
TTTTATTTCAAAAAAAATTGATACTTTCAACTTTTCTTAAAAATACTTTTTTTGAAAT
Found at i:24308381 original size:69 final size:67
Alignment explanation
Indices: 24308307--24308638 Score: 321
Period size: 69 Copynumber: 4.9 Consensus size: 67
24308297 TCAAAAAACT
* * *
24308307 TTTTTTGAAATTTTTATTTTAAAAAAATTGATATTTTCAACTTTTTCTCTAAAATACATTTTTTT
1 TTTTTT-AAAATTTTATTTTAAAAAAATTGATACTTTCAACTTTTTCTCAAAAATAC-TTTTTTT
*
24308372 CAAA
64 GAAA
*
24308376 TTTTTT---ATTTTCA----AAAAAAATTGATACTTTCAACTTTTCCTCAAAAAT--TTTTTTTG
1 TTTTTTAAAATTTT-ATTTTAAAAAAATTGATACTTTCAACTTTTTCTCAAAAATACTTTTTTTG
24308432 AAA
65 AAA
* * * *
24308435 TTTTTATTAAAATTTTATTTTCAAGAAAAATTGATACTTTTAAC-TTATCTTAAAAAATACCTTT
1 -TTTT-TTAAAATTTTATTTT-AA-AAAAATTGATACTTTCAACTTTTTC-TCAAAAATACTTTT
24308499 TTTGAAA
61 TTTGAAA
* *
24308506 TTTTGTTAAAATTTTATTTAAAAAAAATTAATAC-TTCAAAC-TTTTCATCAAAAATACTTTTTT
1 TTTT-TTAAAATTTTATTTTAAAAAAATTGATACTTTC-AACTTTTTC-TCAAAAATACTTTTTT
24308569 TGAAA
63 TGAAA
*
24308574 TTTTTATTAAAATTTTATTTTTAAGAAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTT
1 -TTTT-TTAAAATTTTA-TTTT-A-AAAAAATTGATACTTTCAACTTTTTCTCAAAAATACTTTT
24308638 T
61 T
24308639 AAAAAATTTT
Statistics
Matches: 219, Mismatches: 22, Indels: 42
0.77 0.08 0.15
Matches are distributed among these distances:
59 10 0.05
60 4 0.02
61 2 0.01
62 32 0.15
63 1 0.00
64 5 0.02
65 4 0.02
66 1 0.00
67 2 0.01
68 42 0.19
69 48 0.22
70 21 0.10
71 16 0.07
72 24 0.11
73 7 0.03
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.49
Consensus pattern (67 bp):
TTTTTTAAAATTTTATTTTAAAAAAATTGATACTTTCAACTTTTTCTCAAAAATACTTTTTTTGA
AA
Found at i:24308548 original size:68 final size:70
Alignment explanation
Indices: 24308378--24308652 Score: 337
Period size: 69 Copynumber: 3.9 Consensus size: 70
24308368 TTTTCAAATT
*
24308378 TTTTATTTTCAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAAT--TTTTTTTGAAATTTTTA
1 TTTTATTTTCAAAAAAAATTGATAC-TTCAACTTTTCATCAAAAATACTTTTTTTGAAATTTTTA
24308441 TTAAAA
65 TTAAAA
* * * * * * *
24308447 TTTTATTTTCAAGAAAAATTGATACTTTTAACTTATCTTAAAAAATACCTTTTTTGAAA-TTTTG
1 TTTTATTTTCAAAAAAAATTGATAC-TTCAACTTTTCATCAAAAATACTTTTTTTGAAATTTTTA
24308511 TTAAAA
65 TTAAAA
*
24308517 TTTTA-TTT-AAAAAAAATTAATACTTCAAACTTTTCATCAAAAATACTTTTTTTGAAATTTTTA
1 TTTTATTTTCAAAAAAAATTGATACTTC-AACTTTTCATCAAAAATACTTTTTTTGAAATTTTTA
24308580 TTAAAA
65 TTAAAA
* * ***
24308586 TTTTATTTTTAAGAAAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTAAAAAATTTTT
1 TTTTATTTTCAA-AAAAAATTGATAC-TTCAACTTTTCATCAAAAATACTTTTTTTGAAATTTTT
24308650 ATT
64 ATT
24308653 TTAAGAGAAT
Statistics
Matches: 178, Mismatches: 20, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
67 2 0.01
68 39 0.22
69 59 0.33
70 18 0.10
71 28 0.16
72 29 0.16
73 3 0.02
ACGTcount: A:0.40, C:0.09, G:0.03, T:0.48
Consensus pattern (70 bp):
TTTTATTTTCAAAAAAAATTGATACTTCAACTTTTCATCAAAAATACTTTTTTTGAAATTTTTAT
TAAAA
Found at i:24309133 original size:20 final size:20
Alignment explanation
Indices: 24309094--24309132 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
24309084 TTGCTTATTT
24309094 TTGGATTATATCATCGAAAA
1 TTGGATTATATCATCGAAAA
*
24309114 TTGGATT-TTTCATCGAAAA
1 TTGGATTATATCATCGAAAA
24309133 AATCACTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
TTGGATTATATCATCGAAAA
Found at i:24309545 original size:4 final size:4
Alignment explanation
Indices: 24309536--24309567 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
24309526 GAACTCTACT
*
24309536 TTTA TTTA TTTA TTTA TTTA TTTA TTTT TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
24309568 AAATTTTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:24309996 original size:85 final size:85
Alignment explanation
Indices: 24309877--24311025 Score: 311
Period size: 86 Copynumber: 13.4 Consensus size: 85
24309867 TGACATAAAC
* * * * *
24309877 AACTTGGACTGATCCCAAGAAAGATCT-AGCATAGGTTGAAATCCAAAACAAAATGACTTAGATT
1 AACTTGGATTGAACCTAAAAAAGATCTGA-CATAGGTTAAAATCCAAAACAAAATGACTTAGATT
*
24309941 GAATTGAAATCTGAAATGAAT
65 GAACTGAAATCTGAAATGAAT
* * * * ** * * *
24309962 AACTTAGATTGAACCTAAGAAAGATCTGACATAGGTTGAAATTCAAAATGAAATAACTTAGGTCG
1 AACTTGGATTGAACCTAAAAAAGATCTGACATAGGTTAAAATCCAAAACAAAATGACTTAGATTG
* *
24310027 AA-TCGAAGTTTGAAAT-AAGT
66 AACT-GAAATCTGAAATGAA-T
* *** * ** * *
24310047 AACTTGGACTAAGCAAAAAAAAAAAAAAATCTGACATAGGCCAAAATCCAAAATAAAATGACCT-
1 AACTTGGA-T-TG---AACCTAAAAAAGATCTGACATAGGTTAAAATCCAAAACAAAATGACTTA
* * *
24310111 GAATGGAA-TCAAAGTCTGAAATGATT
61 G-ATTGAACTGAAA-TCTGAAATGAAT
* ** * * * *
24310137 AACTTGGA-CGAAGTTAAAAAATGATTTGACGTATGTTAAAATCCAAAA-ATAAGATGACCTAGA
1 AACTTGGATTGAACCTAAAAAA-GATCTGACATAGGTTAAAATCCAAAACA-AA-ATGACTTAGA
*
24310200 -TGAAAC-CAAAGTCTGAAATGAAT
63 TTG-AACTGAAA-TCTGAAATGAAT
* * * * * * *
24310223 ACCTTAGACT-AAGCCAAAAAAAGATTTGACATAAGTTAAAATCCAAAAACAAAATGACTTGGAT
1 AACTTGGATTGAA-CCTAAAAAAGATCTGACATAGGTTAAAATCC-AAAACAAAATGACTTAGAT
* * *
24310287 TAAACTGAAGTCTGAAAAGAAT
64 TGAACTGAAATCTGAAATGAAT
* * * * * * * * * * * *
24310309 AACTTGAACT-AAGCTGAAAAAGGATCT-AGATAGGCTGAAATCTAAAAACAAAATAATTTGGAC
1 AACTTGGATTGAACCT-AAAAAAGATCTGACATAGGTTAAAATC-CAAAACAAAATGACTTAGAT
* *
24310372 TAAACTGAAGTCTGAAATGAAT
64 TGAACTGAAATCTGAAATGAAT
* * * * * * ** * * *
24310394 AACTTGGATTAAATCGAAGAAAGATTTGACAAAAATCAAAAT-C-AAATAAAATGACTTGGA-TG
1 AACTTGGATTGAACCTAAAAAAGATCTGACATAGGTTAAAATCCAAAACAAAATGACTTAGATTG
* * *
24310456 AAACCGAAGTTTGAAATGAAT
66 -AACTGAAATCTGAAATGAAT
* * * * * * * * *
24310477 AACTTGGACT-AAGCTAAAAAAAGATTTGGCACAAGTTGAAATCCAAAA-ATAAGATGACCTGGA
1 AACTTGGATTGAACCT-AAAAAAGATCTGACATAGGTTAAAATCCAAAACA-AA-ATGACTTAGA
* * *
24310540 TGGAACTGAAGTCTAAAATGAAT
63 TTGAACTGAAATCTGAAATGAAT
* * * * * *
24310563 ACCTTGGACT-AGGCC-AAAAAAGGATTTGACATAGGTCAAAATTCAAAAGCAAAATGACTTAGA
1 AACTTGGATTGA-ACCTAAAAAA-GATCTGACATAGGTTAAAATCCAAAA-CAAAATGACTTAGA
* * * *
24310626 CTGAAC-CAAAGTTTGAAAAGAAT
63 TTGAACTGAAA-TCTGAAATGAAT
* * * * * * ** * * *
24310649 AACTTAGACT-AAACTGAAAAAGGATCTGGCATATGCCAAAATCTAAAAACAAAATGACCTGGAT
1 AACTTGGATTGAACCT-AAAAAAGATCTGACATAGGTTAAAATC-CAAAACAAAATGACTTAGAT
* * **
24310713 TGAACTGAAGTTTGAAACAAAT
64 TGAACTGAAATCTGAAATGAAT
* * * * * * * * *** * * *
24310735 GAC-TAGACTAAACCAAAAAAAGATATGGCAAATGCAAAAAATCCTAAAATAGAATGACTTGGAT
1 AACTTGGATTGAACCTAAAAAAGATCTGACATA-GGTTAAAATCC-AAAACAAAATGACTTAGAT
* *
24310799 TGAAC-CAAACTCTGAAAAGAAT
64 TGAACTGAAA-TCTGAAATGAAT
* * * * * * * ** * *
24310821 AACTTGGACT-AAGCTAAAGAAGGATTTGCCATATGTCAAAATTTGAAAAAAAAATGACCTAGAT
1 AACTTGGATTGAACCTAAA-AAAGATCTGACATAGGTTAAAA-TCCAAAACAAAATGACTTAGAT
* *
24310885 TGAA-TCGAAGTCTGAAATAAAT
64 TGAACT-GAAATCTGAAATGAAT
* * * * * * * * * * *
24310907 GACTTAGACT-AAGTCGAAAAAGGATCTAACATATGTTAAAATTCAAAAATAAAATGA-TCTGGA
1 AACTTGGATTGAA-CCTAAAAAAGATCTGACATAGGTTAAAA-TCCAAAACAAAATGACT-TAGA
*
24310970 TTGAA-TCGAAATCTAAAATGAAT
63 TTGAACT-GAAATCTGAAATGAAT
* * * * * * *
24310993 GATTTGGACTAAATCAAAAAAAGATCTGGCATA
1 AACTTGGATTGAACCTAAAAAAGATCTGACATA
24311026 TACTGAAATT
Statistics
Matches: 801, Mismatches: 208, Indels: 109
0.72 0.19 0.10
Matches are distributed among these distances:
82 4 0.00
83 61 0.08
84 14 0.02
85 197 0.25
86 405 0.51
87 57 0.07
88 2 0.00
89 3 0.00
90 57 0.07
91 1 0.00
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.23
Consensus pattern (85 bp):
AACTTGGATTGAACCTAAAAAAGATCTGACATAGGTTAAAATCCAAAACAAAATGACTTAGATTG
AACTGAAATCTGAAATGAAT
Found at i:24310303 original size:172 final size:171
Alignment explanation
Indices: 24310067--24311097 Score: 717
Period size: 172 Copynumber: 6.0 Consensus size: 171
24310057 AAGCAAAAAA
* * * * * * ** *
24310067 AAAAAAAAATCTGACATAGGCCAAAATCC-AAAATAAAATGACCTGAATGGAATCAAAGTCTGAA
1 AAAAAAAGATTTGACATAAGTCAAAATCCAAAAATAAAATGACTTGGATTAAACCAAAGTCTGAA
* * * * * * * *
24310131 ATGATTAACTTGGACGAAGTTAAAAAATGATTTGACGTATGTTAAAATCCAAAAATAAGATGACC
66 AAGAATAACTTGGACTAAGCTAAAAAAGGATTTGACATATGTTAAAATCCAAAAACAAAATGACC
* **
24310196 TAGA-TGAAACCAAAGTCTGAAATGAATACCTTAGACTAAGCC
131 TGGATTG-AACTGAAGTCTGAAATGAATA-CTTAGACTAAGCC
* * **
24310238 AAAAAAAGATTTGACATAAGTTAAAATCCAAAAACAAAATGACTTGGATTAAACTGAAGTCTGAA
1 AAAAAAAGATTTGACATAAGTCAAAATCCAAAAATAAAATGACTTGGATTAAACCAAAGTCTGAA
* * * * * * * * * **
24310303 AAGAATAACTTGAACTAAGCTGAAAAAGGATCT-AGATAGGCTGAAATCTAAAAACAAAATAATT
66 AAGAATAACTTGGACTAAGCTAAAAAAGGATTTGACATATGTTAAAATCCAAAAACAAAATGACC
* * * * **
24310367 TGGACTAAACTGAAGTCTGAAATGAATAACTTGGATTAAATC
131 TGGATTGAACTGAAGTCTGAAATGAAT-ACTTAGACTAAGCC
* * * * * * *
24310409 GAAGAAAGATTTGACAAAAATCAAAAT-C--AAATAAAATGACTTGGATGAAACCGAAGTTTGAA
1 AAAAAAAGATTTGACATAAGTCAAAATCCAAAAATAAAATGACTTGGATTAAACCAAAGTCTGAA
* * * * * * * *
24310471 ATGAATAACTTGGACTAAGCTAAAAAAAGATTTGGCACAAGTTGAAATCCAAAAATAAGATGACC
66 AAGAATAACTTGGACTAAGCTAAAAAAGGATTTGACATATGTTAAAATCCAAAAACAAAATGACC
* * * *
24310536 TGGATGGAACTGAAGTCTAAAATGAATACCTTGGACTAGGCC
131 TGGATTGAACTGAAGTCTGAAATGAATA-CTTAGACTAAGCC
* * * ** * * * *
24310578 AAAAAAGGATTTGACATAGGTCAAAATTCAAAAGCAAAATGACTTAGACTGAACCAAAGTTTGAA
1 AAAAAAAGATTTGACATAAGTCAAAATCCAAAAATAAAATGACTTGGATTAAACCAAAGTCTGAA
* * * * * ** *
24310643 AAGAATAACTTAGACTAAACTGAAAAAGGATCTGGCATATGCCAAAATCTAAAAACAAAATGACC
66 AAGAATAACTTGGACTAAGCTAAAAAAGGATTTGACATATGTTAAAATCCAAAAACAAAATGACC
* ** *
24310708 TGGATTGAACTGAAGTTTGAAACAAATGAC-TAGACTAAACC
131 TGGATTGAACTGAAGTCTGAAATGAAT-ACTTAGACTAAGCC
* * * * * *
24310749 AAAAAAAGATATGGCA-AA-TGCAAAAAATCCTAAAATAGAATGACTTGGATTGAACCAAACTCT
1 AAAAAAAGATTTGACATAAGT-C--AAAATCCAAAAATAAAATGACTTGGATTAAACCAAAGTCT
* * * **
24310812 GAAAAGAATAACTTGGACTAAGCTAAAGAAGGATTTGCCATATGTCAAAATTTGAAAAA-AAAAT
63 GAAAAGAATAACTTGGACTAAGCTAAAAAAGGATTTGACATATGTTAAAA-TCCAAAAACAAAAT
* * *
24310876 GACCTAGATTGAA-TCGAAGTCTGAAATAAATGACTTAGACTAAGTC
127 GACCTGGATTGAACT-GAAGTCTGAAATGAAT-ACTTAGACTAAGCC
* * * * * * * * *
24310922 GAAAAAGGATCTAACATATGTTAAAATTCAAAAATAAAATGA-TCTGGATTGAATCGAAA-TCT-
1 AAAAAAAGATTTGACATAAGTCAAAATCCAAAAATAAAATGACT-TGGATT-AAACCAAAGTCTG
* * * * * * ** * * *
24310984 AAAATGAATGATTTGGACTAA-ATCAAAAAAAGATCTGGCATATACTGAAATTCAAAAATAAAAT
64 AAAA-GAATAACTTGGACTAAGCT-AAAAAAGGATTTGACATATGTTAAAATCCAAAAACAAAAT
** * * *
24311048 GATTTGGATTCAA-TCGAAGTTTGAAATGAATAATCTAGACTAAGCC
127 GACCTGGATTGAACT-GAAGTCTGAAATGAATACT-TAGACTAAGCC
24311094 AAAA
1 AAAA
24311098 TACATTAGTA
Statistics
Matches: 668, Mismatches: 169, Indels: 45
0.76 0.19 0.05
Matches are distributed among these distances:
168 59 0.09
169 74 0.11
170 4 0.01
171 133 0.20
172 364 0.54
173 32 0.05
174 1 0.00
175 1 0.00
ACGTcount: A:0.48, C:0.13, G:0.16, T:0.23
Consensus pattern (171 bp):
AAAAAAAGATTTGACATAAGTCAAAATCCAAAAATAAAATGACTTGGATTAAACCAAAGTCTGAA
AAGAATAACTTGGACTAAGCTAAAAAAGGATTTGACATATGTTAAAATCCAAAAACAAAATGACC
TGGATTGAACTGAAGTCTGAAATGAATACTTAGACTAAGCC
Found at i:24310561 original size:340 final size:343
Alignment explanation
Indices: 24310088--24310963 Score: 856
Period size: 340 Copynumber: 2.6 Consensus size: 343
24310078 TGACATAGGC
* * * *
24310088 CAAAATCCAAAATAAAATGACCTGAATGGAATCAAAGTCTGAAATGATTAACTTGGACGAAGTTA
1 CAAAATCCAAAATAAAATGACCTGAATGAAACCAAAGTCTGAAATGAATAACTTGGACGAAGCTA
* ** * *
24310153 AAAAATGATTTGACGTATGTTAAAATCCAAAAATAAGATGACCTAGATGAAACCAAAGTCTGAAA
66 AAAAAAGATTTGACACAAGTTAAAATCCAAAAATAAGATGACCTAGATGAAACCAAAGTCTAAAA
*
24310218 TGAATACCTTAGACTAAGCCAAAAAAAGATTTGACATAAGTTAAAATCCAAAAACAAAATGACTT
131 TGAATACCTTAGACTAAGCCAAAAAAAGATTTGACATAAGTCAAAATCCAAAAACAAAATGACTT
* * ** * **
24310283 GGATTAAACTGAAGTCTGAAAAGAATAACTT-GAACTAAGCTGAAAAAGGATCTAG-ATAGGCTG
196 AGACTAAACCAAAGTCTGAAAAGAATAACTTAG-ACTAAACTGAAAAAGGATCTAGCATAGGCCA
24310346 AAATCTAAAAACAAAATAATTTGGACTAAACTGAAGTCTGAAATGAATAACTTGGATTAAATCGA
260 AAATCTAAAAACAAAATAATTTGGACTAAACTGAAGTCTGAAATGAATAACTTGGATTAAATCGA
24310411 AGAAAGATTTGACAAAAAT
325 AGAAAGATTTGACAAAAAT
* * * * *
24310430 CAAAAT-C-AAATAAAATGACTTGGATGAAACCGAAGTTTGAAATGAATAACTTGGACTAAGCTA
1 CAAAATCCAAAATAAAATGACCTGAATGAAACCAAAGTCTGAAATGAATAACTTGGACGAAGCTA
* * * * **
24310493 AAAAAAGATTTGGCACAAGTTGAAATCCAAAAATAAGATGACCTGGATGGAACTGAAGTCTAAAA
66 AAAAAAGATTTGACACAAGTTAAAATCCAAAAATAAGATGACCTAGATGAAACCAAAGTCTAAAA
* * * * * *
24310558 TGAATACCTTGGACTAGGCCAAAAAAGGATTTGACATAGGTCAAAATTCAAAAGCAAAATGACTT
131 TGAATACCTTAGACTAAGCCAAAAAAAGATTTGACATAAGTCAAAATCCAAAAACAAAATGACTT
* * * *
24310623 AGACTGAACCAAAGTTTGAAAAGAATAACTTAGACTAAACTGAAAAAGGATCTGGCATATGCCAA
196 AGACTAAACCAAAGTCTGAAAAGAATAACTTAGACTAAACTGAAAAAGGATCTAGCATAGGCCAA
* ** * * * ** * * * * *
24310688 AATCTAAAAACAAAATGACCTGGATTGAACTGAAGTTTGAAACAAATGAC-TAGACTAAACCAAA
261 AATCTAAAAACAAAATAATTTGGACTAAACTGAAGTCTGAAATGAATAACTTGGATTAAATCGAA
* * *
24310752 AAAAGATATGGC--AAAT
326 GAAAGATTTGACAAAAAT
* * * * * *
24310768 GCAAAAAATCCTAAAATAGAATGACTTGGATTG-AACCAAACTCTGAAAAGAATAACTTGGACTA
1 -C--AAAATCC-AAAATAAAATGACCT-GAATGAAACCAAAGTCTGAAATGAATAACTTGGACGA
* * * * * * ** * * *
24310832 AGCTAAAGAAGGATTTGCCATATGTCAAAATTTGAAAAA-AAAATGACCTAGATTG-AATCGAAG
61 AGCTAAAAAAAGATTTGACACAAGTTAAAA-TCCAAAAATAAGATGACCTAGA-TGAAACCAAAG
* * * * * * * * * * *
24310895 TCTGAAATAAATGA-CTTAGACTAAGTCGAAAAAGGATCTAACATATGTTAAAATTCAAAAATAA
124 TCTAAAATGAAT-ACCTTAGACTAAGCCAAAAAAAGATTTGACATAAGTCAAAATCCAAAAACAA
24310959 AATGA
188 AATGA
24310964 TCTGGATTGA
Statistics
Matches: 436, Mismatches: 86, Indels: 22
0.80 0.16 0.04
Matches are distributed among these distances:
338 4 0.01
339 1 0.00
340 223 0.51
341 54 0.12
342 7 0.02
344 135 0.31
345 12 0.03
ACGTcount: A:0.48, C:0.13, G:0.17, T:0.23
Consensus pattern (343 bp):
CAAAATCCAAAATAAAATGACCTGAATGAAACCAAAGTCTGAAATGAATAACTTGGACGAAGCTA
AAAAAAGATTTGACACAAGTTAAAATCCAAAAATAAGATGACCTAGATGAAACCAAAGTCTAAAA
TGAATACCTTAGACTAAGCCAAAAAAAGATTTGACATAAGTCAAAATCCAAAAACAAAATGACTT
AGACTAAACCAAAGTCTGAAAAGAATAACTTAGACTAAACTGAAAAAGGATCTAGCATAGGCCAA
AATCTAAAAACAAAATAATTTGGACTAAACTGAAGTCTGAAATGAATAACTTGGATTAAATCGAA
GAAAGATTTGACAAAAAT
Found at i:24311097 original size:86 final size:86
Alignment explanation
Indices: 24310096--24311097 Score: 571
Period size: 86 Copynumber: 11.7 Consensus size: 86
24310086 GCCAAAATCC
* * * * * * * ** *
24310096 AAAATAAAATGACCTGAATGGAATCAAAGTCTGAAATGATTAACTTGGACGAAGTTAAAAAATGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
* * * * *
24310161 TTTGACGTATGTTAAAATCCA
66 TCTGGCATATGCTAAAATTCA
* * * * *
24310182 AAAATAAGATGACCTAGA-TGAAACCAAAGTCTGAAATGAATACCTTAGACTAAGCCAAAAAAAG
1 AAAATAAAATGACCTGGATTG-AACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGG
* * * * *
24310246 ATTTGACATAAGTTAAAATCCA
65 ATCTGGCATATGCTAAAATTCA
* * * * * **
24310268 AAAACAAAATGACTTGGATTAAACTGAAGTCTGAAAAGAATAACTT-GAACTAAGCTGAAAAAGG
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAG-ACTAAGCCAAAAAAGG
* * *
24310332 ATCTAG-ATAGGCTGAAA-TCTA
65 ATCTGGCATATGCTAAAATTC-A
* * ** * * * * * * * *
24310353 AAAACAAAATAATTTGGACTAAACTGAAGTCTGAAATGAATAACTTGGATTAAATCGAAGAAA-G
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACT-AAGCCAAAAAAGG
* * *
24310417 ATTTGACAAAAAT-C-AAAA-TC-
65 ATCTGGC--ATATGCTAAAATTCA
* * * * *
24310437 -AAATAAAATGACTTGGA-TGAAACCGAAGTTTGAAATGAATAACTTGGACTAAGCTAAAAAAAG
1 AAAATAAAATGACCTGGATTG-AACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGG
* * * * * *
24310500 ATTTGGCACAAGTTGAAATCCA
65 ATCTGGCATATGCTAAAATTCA
* * * * * * *
24310522 AAAATAAGATGACCTGGATGGAACTGAAGTCTAAAATGAATACCTTGGACTAGGCCAAAAAAGGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
* * *
24310587 TTTGACATA-GGTCAAAATTCA
66 TCTGGCATATGCT-AAAATTCA
** * * * * * * * **
24310608 AAAGCAAAATGACTTAGACTGAACCAAAGTTTGAAAAGAATAACTTAGACTAAACTGAAAAAGGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
*
24310673 TCTGGCATATGCCAAAA-TCTA
66 TCTGGCATATGCTAAAATTC-A
* * * ** * * *
24310694 AAAACAAAATGACCTGGATTGAACTGAAGTTTGAAACAAATGAC-TAGACTAAACCAAAAAAAGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
* * * * *
24310758 TATGGCAAATGCAAAAAATCCT
66 TCTGGCATATGC-TAAAATTCA
* * * * * * * *
24310780 AAAATAGAATGACTTGGATTGAACCAAACTCTGAAAAGAATAACTTGGACTAAGCTAAAGAAGGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
* * *
24310845 TTTGCCATATG-TCAAAATTTGA
66 TCTGGCATATGCT-AAAA-TTCA
* * * * * *
24310867 AAAA-AAAATGACCTAGATTGAATCGAAGTCTGAAATAAATGACTTAGACTAAGTCGAAAAAGGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
** *
24310931 TCTAACATATGTTAAAATTCA
66 TCTGGCATATGCTAAAATTCA
* * * * * * * ** *
24310952 AAAATAAAATGATCTGGATTGAATCGAAATCTAAAATGAATGATTTGGACTAAATCAAAAAAAGA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
* *
24311017 TCTGGCATATACTGAAATTCA
66 TCTGGCATATGCTAAAATTCA
** * * *
24311038 AAAATAAAATGATTTGGATTCAATCGAAGTTTGAAATGAATAA-TCTAGACTAAGCCAAAA
1 AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACT-TAGACTAAGCCAAAA
24311098 TACATTAGTA
Statistics
Matches: 706, Mismatches: 182, Indels: 56
0.75 0.19 0.06
Matches are distributed among these distances:
81 2 0.00
82 9 0.01
83 51 0.07
84 2 0.00
85 98 0.14
86 508 0.72
87 34 0.05
88 2 0.00
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.23
Consensus pattern (86 bp):
AAAATAAAATGACCTGGATTGAACCGAAGTCTGAAATGAATAACTTAGACTAAGCCAAAAAAGGA
TCTGGCATATGCTAAAATTCA
Found at i:24311997 original size:59 final size:59
Alignment explanation
Indices: 24311883--24312055 Score: 206
Period size: 59 Copynumber: 2.9 Consensus size: 59
24311873 ATCCCCCCAT
**
24311883 TTTTTAAAACTCAAACTGCCCTTTATAGGTTTTCAATTTGAG-TTTTTCTTTTTTTTTTT-
1 TTTTT-AAACTCAAACCACCCTTTATAGGTTTTCAATTTGAGCTTTTT-TTTTTTTTTTTG
* * *** * *
24311942 TTTTTGAACTTAAATGGCCTTTTATGGGTTTTCAATTTGAGCTTTTTTTTTTTTTTTTG
1 TTTTTAAACTCAAACCACCCTTTATAGGTTTTCAATTTGAGCTTTTTTTTTTTTTTTTG
* **
24312001 TTTTTAAACTCAAACCACCCTTTATAAGTTTTCAATTTGAGCCCTTTTTTTTTTT
1 TTTTTAAACTCAAACCACCCTTTATAGGTTTTCAATTTGAGCTTTTTTTTTTTTT
24312056 AACTTAAATT
Statistics
Matches: 96, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
58 41 0.43
59 55 0.57
ACGTcount: A:0.20, C:0.14, G:0.10, T:0.57
Consensus pattern (59 bp):
TTTTTAAACTCAAACCACCCTTTATAGGTTTTCAATTTGAGCTTTTTTTTTTTTTTTTG
Found at i:24322750 original size:58 final size:60
Alignment explanation
Indices: 24322613--24322849 Score: 265
Period size: 58 Copynumber: 4.0 Consensus size: 60
24322603 TATTAAAGCA
* * * *
24322613 TTTTGACATTTTTATTTTCAAAAAAAAATTAATACTTTCAACTTTTTCTTAAAAATGTTTTT
1 TTTTGAAAATTTTATTTTC-AAGAAAAATTAATACTTTCAACTTTTTCCTAAAAAT-TTTTT
* * *
24322675 TTTTTAAAATTTTATTTTCAAGAAAAATTGATATTTTCAA-TTTTTCCT-AAAATTTTTT
1 TTTTGAAAATTTTATTTTCAAGAAAAATTAATACTTTCAACTTTTTCCTAAAAATTTTTT
*
24322733 TTTTGAAAATTTTATTTTCAA-AGAAAATTAATACTTTCAACTTTTT-CTCAATAA--TTTT
1 TTTTGAAAATTTTATTTTCAAGA-AAAATTAATACTTTCAACTTTTTCCT-AAAAATTTTTT
* * * * *
24322791 TTTT--AAATTTTATTTTCAAGGAAAATTGATATTTTCAACTTTTTCTTAAAAAATTTTT
1 TTTTGAAAATTTTATTTTCAAGAAAAATTAATACTTTCAACTTTTTCCTAAAAATTTTTT
24322849 T
1 T
24322850 CAAGAAAAAT
Statistics
Matches: 151, Mismatches: 16, Indels: 20
0.81 0.09 0.11
Matches are distributed among these distances:
56 40 0.26
57 2 0.01
58 55 0.36
59 10 0.07
60 10 0.07
61 18 0.12
62 16 0.11
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.53
Consensus pattern (60 bp):
TTTTGAAAATTTTATTTTCAAGAAAAATTAATACTTTCAACTTTTTCCTAAAAATTTTTT
Found at i:24322815 original size:56 final size:57
Alignment explanation
Indices: 24322622--24322841 Score: 241
Period size: 56 Copynumber: 3.8 Consensus size: 57
24322612 ATTTTGACAT
*
24322622 TTTTATTTTCAAAAAAAAATTAATACTTTCAACTTTTTCTTAAAAATGTTTTTTTTTTAAAA
1 TTTTATTTTC-AAAAAAAATTAATACTTTCAACTTTTTC-TCAAAA---TTTTTTTTTAAAA
* * *
24322684 TTTTATTTTCAAGAAAAATTGATATTTTCAA-TTTTTC-CTAAAATTTTTTTTTTGAAAA
1 TTTTATTTTCAAAAAAAATTAATACTTTCAACTTTTTCTC-AAAA-TTTTTTTTT-AAAA
*
24322742 TTTTATTTTCAAAGAAAATTAATACTTTCAACTTTTTCTCAATAA-TTTTTTTT-AAA
1 TTTTATTTTCAAAAAAAATTAATACTTTCAACTTTTTCTCAA-AATTTTTTTTTAAAA
** * * *
24322798 TTTTATTTTCAAGGAAAATTGATATTTTCAACTTTTTCTTAAAA
1 TTTTATTTTCAAAAAAAATTAATACTTTCAACTTTTTCTCAAAA
24322842 AATTTTTTCA
Statistics
Matches: 141, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
55 2 0.01
56 41 0.29
57 10 0.07
58 39 0.28
59 12 0.09
60 9 0.06
61 18 0.13
62 10 0.07
ACGTcount: A:0.36, C:0.09, G:0.04, T:0.52
Consensus pattern (57 bp):
TTTTATTTTCAAAAAAAATTAATACTTTCAACTTTTTCTCAAAATTTTTTTTTAAAA
Found at i:24322911 original size:60 final size:60
Alignment explanation
Indices: 24322846--24323275 Score: 326
Period size: 60 Copynumber: 7.1 Consensus size: 60
24322836 TTAAAAAATT
*
24322846 TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCTAATAATCTTTTTTTGAAATTTTTA
1 TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCTAAAAATCTTTTTTTGAAATTTTTA
* ***** * *
24322906 TTTTCAATAAAAATTGATACTTTCAACTTTTTAAAAAAAAAAACCTTTTTTGAAA-TTTTA
1 TTTTCAAGAAAAATTGATACTTTCAAC-TTTTCCTCTAAAAATCTTTTTTTGAAATTTTTA
* * * * *
24322966 -TCT-AAGGAAAATTGATA-TTGTTAACTTTTCCTCAAAAAAT-TTTTTTTAAAATTTTTA
1 TTTTCAAGAAAAATTGATACTT-TCAACTTTTCCTCTAAAAATCTTTTTTTGAAATTTTTA
* * ** * * *
24323023 TTTTCAAGAAACATTGATATTTTTCAACTTTTTTTGTAAAAGTACATTTTTTGAAA-TTTTA
1 TTTTCAAGAAAAATTGATA-CTTTCAACTTTTCCTCTAAAAAT-CTTTTTTTGAAATTTTTA
* * * * *
24323084 TTTTCAAGAAAAATTGATAATTTCAATTTTTTCTC-AAAAATATATATTTTTTAATTTTTATTAA
1 TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCTAAAAATCT-T-TTTTTGAA-----A-T--
24323148 AATTTTA
56 --TTTTA
* * * *
24323155 TTTTCATGAAAAATTGATACTTTCAACTTTT-CTTTAAAAATATTTTTTTTGAAAATTTTA
1 TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCTAAAAAT-CTTTTTTTGAAATTTTTA
* *
24323215 TTTT-AAGAAAAGTTGATACTTTCAACTTTTCCTC-AAAAATACATTTTTTG-AATTTTT-
1 TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCTAAAAAT-CTTTTTTTGAAATTTTTA
24323272 TTTT
1 TTTT
24323276 AAATTTTATT
Statistics
Matches: 292, Mismatches: 53, Indels: 53
0.73 0.13 0.13
Matches are distributed among these distances:
56 9 0.03
57 21 0.07
58 24 0.08
59 58 0.20
60 75 0.26
61 44 0.15
62 9 0.03
65 2 0.01
70 9 0.03
71 40 0.14
72 1 0.00
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (60 bp):
TTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCTAAAAATCTTTTTTTGAAATTTTTA
Found at i:24322945 original size:103 final size:99
Alignment explanation
Indices: 24322747--24322946 Score: 276
Period size: 103 Copynumber: 2.0 Consensus size: 99
24322737 GAAAATTTTA
* *
24322747 TTTTCAAAGAAAATTAATACTTTCAACTTTTTCTCAATAATTTTTTTTAAATTTTATTTTCAAGG
1 TTTTCAAAGAAAATTAATACTTTCAACTTTTCCTCAATAATTTTTTTTAAATTTTATTTTCAAGA
* ***
24322812 AAAATTGATATTTTCAACTTTTTCTTAAAAAATT
66 AAAATTGATACTTTCAACTTTTTAAAAAAAAATT
*
24322846 TTTTC-AAGAAAAATTGATACTTTCAACTTTTCCTCTAATAATCTTTTTTTGAAATTTTTATTTT
1 TTTTCAAAG-AAAATTAATACTTTCAACTTTTCCTC-AATAAT-TTTTTTT-AAA-TTTTATTTT
*
24322910 CAATAAAAATTGATACTTTCAACTTTTTAAAAAAAAA
61 CAAGAAAAATTGATACTTTCAACTTTTTAAAAAAAAA
24322947 AACCTTTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
98 3 0.03
99 29 0.33
100 6 0.07
101 7 0.08
102 3 0.03
103 40 0.45
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (99 bp):
TTTTCAAAGAAAATTAATACTTTCAACTTTTCCTCAATAATTTTTTTTAAATTTTATTTTCAAGA
AAAATTGATACTTTCAACTTTTTAAAAAAAAATT
Found at i:24323214 original size:71 final size:71
Alignment explanation
Indices: 24323068--24323415 Score: 306
Period size: 71 Copynumber: 5.1 Consensus size: 71
24323058 GTAAAAGTAC
* *
24323068 ATTTT-TTGAAATTTTATTTTCAAGAAAAATTGATAATTTCAA-TTTT-TTCTCAAAAATATATA
1 ATTTTATTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTT-T-AAAAATAT-T-
24323130 TTTTTT--AA
62 TTTTTTGAAA
* *
24323138 TTTTTATTAAAATTTTATTTTCATGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTT
1 ATTTTATTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTT
24323203 TTG---
66 TTGAAA
* * * **
24323206 --------AAAATTTTATTTT-AAGAAAAGTTGATACTTTCAACTTTTCCTCAAAAATACATTTT
1 ATTTTATTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTT
24323262 TTG-AA
66 TTGAAA
* * * * * * * * *
24323267 TTTTTTTTTAAATTTTATTTTCAAGGAAAAGTAATACTTTCGACTTTTC-TTCAAAATATATTTT
1 ATTTTATTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTT
24323331 TTGAAA
66 TTGAAA
* * *
24323337 TTTTTATTAAAATTTTATTTTTAAGAAAAATTGATACTTTTCAACTTTT-TCTCAAAAATA-TTT
1 ATTTTATTAAAATTTTATTTTCAAGAAAAATTGATAC-TTTCAACTTTTCT-TTAAAAATATTTT
24323400 TTTTGAAA
64 TTTTGAAA
24323408 ATTTTATT
1 ATTTTATT
24323416 TTAAGAGAAT
Statistics
Matches: 229, Mismatches: 30, Indels: 37
0.77 0.10 0.12
Matches are distributed among these distances:
59 40 0.17
60 13 0.06
69 33 0.14
70 60 0.26
71 69 0.30
72 12 0.05
73 2 0.01
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (71 bp):
ATTTTATTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTTTT
TTGAAA
Found at i:24323231 original size:130 final size:130
Alignment explanation
Indices: 24323003--24323344 Score: 438
Period size: 129 Copynumber: 2.6 Consensus size: 130
24322993 TTCCTCAAAA
* * * * *
24323003 AATTTTTTTTAAAATTTTTATTTTCAAGAAACATTGATATTTTTCAACTTTTTTTGTAAAAGTAC
1 AATTTTTTTTAAAA-TTTTATTTTCAAGAAAAATTGATA-CTTTCAACTTTTCTT-TAAAAATAT
* * *
24323068 ATTTTTTG-AAATTTTATTTTCAAGAAAAATTGATAATTTCAATTTTTTCTCAAAAATATATATT
63 ATTTTTTGAAAATTTTATTTTCAAGAAAAATTGATAATTTCAACTTTTCCTCAAAAATACAT-TT
*
24323132 TTTT
127 TTTG
* * *
24323136 AATTTTTATTAAAATTTTATTTTCATGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATTTT
1 AATTTTTTTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATATT
* *
24323201 TTTTGAAAATTTTATTTT-AAGAAAAGTTGATACTTTCAACTTTTCCTCAAAAATACATTTTTTG
66 TTTTGAAAATTTTATTTTCAAGAAAAATTGATAATTTCAACTTTTCCTCAAAAATACATTTTTTG
* * * * * *
24323265 AATTTTTTTTTAAATTTTATTTTCAAGGAAAAGTAATACTTTCGACTTTTC-TTCAAAATATATT
1 AATTTTTTTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATATT
*
24323329 TTTTGAAATTTTTATT
66 TTTTGAAAATTTTATT
24323345 AAAATTTTAT
Statistics
Matches: 184, Mismatches: 24, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
128 26 0.14
129 49 0.27
130 49 0.27
131 25 0.14
132 22 0.12
133 13 0.07
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.52
Consensus pattern (130 bp):
AATTTTTTTTAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCTTTAAAAATATATT
TTTTGAAAATTTTATTTTCAAGAAAAATTGATAATTTCAACTTTTCCTCAAAAATACATTTTTTG
Found at i:24323233 original size:59 final size:60
Alignment explanation
Indices: 24323137--24323421 Score: 218
Period size: 70 Copynumber: 4.5 Consensus size: 60
24323127 ATATTTTTTA
* * * *
24323137 ATTTTTATT-AAAATTTTATTTTCATGAAAAATTGATACTTTCAACTTTTCTTTAAAAAT
1 ATTTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAT
*
24323196 ATTTTTTTTGAAAATTTTATTTT-AAGAAAAGTTGATACTTTCAACTTTTCCTCAAAAAT
1 ATTTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAT
** * * * * *
24323255 ACATTTTTTGAATTTTTTTTTAAATTTTATTTTCAAGGAAAAGTAATACTTTCGACTTTTCTTCA
1 --A-----T---TTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCA
24323320 AAATAT
56 AAA-AT
* * *
24323326 ATTTTTTGAAATTTTTATTAAAATTTTATTTTTAAGAAAAATTGATACTTTTCAACTTTTTCTCA
1 A----TT----TTTTT-TGAAAATTTTATTTTCAAGAAAAATTGATAC-TTTCAACTTTTCCTCA
24323391 AAAAT
56 AAAAT
24323396 A-TTTTTTTGAAAATTTTATTTT-AAGA
1 ATTTTTTTTGAAAATTTTATTTTCAAGA
24323422 GAATCATTGA
Statistics
Matches: 185, Mismatches: 22, Indels: 38
0.76 0.09 0.16
Matches are distributed among these distances:
59 44 0.24
60 27 0.15
61 6 0.03
65 2 0.01
66 1 0.01
68 5 0.03
69 25 0.14
70 57 0.31
71 18 0.10
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (60 bp):
ATTTTTTTTGAAAATTTTATTTTCAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAT
Found at i:24323270 original size:70 final size:68
Alignment explanation
Indices: 24323196--24323406 Score: 264
Period size: 70 Copynumber: 3.0 Consensus size: 68
24323186 CTTTAAAAAT
24323196 ATTTTTTTTGAAAATTTTATTTTAAGAAAAGTTGATACTTTCAACTTTTCCTCAAAAATACATTT
1 ATTTTTTTT-AAAATTTTATTTTAAGAAAAGTTGATACTTTCAACTTTTCCTCAAAAATA-ATTT
24323261 TTTGA
64 TTTGA
* * * *
24323266 ATTTTTTTTTAAATTTTATTTTCAAGGAAAAG-TAATACTTTCGACTTTTCTTC-AAAATATATT
1 ATTTTTTTTAAAATTTTATTTT-AA-GAAAAGTTGATACTTTCAACTTTTCCTCAAAAATA-ATT
24323329 TTTTGAA
63 TTTTG-A
* * * *
24323336 ATTTTTATTAAAATTTTATTTTTAAGAAAAATTGATACTTTTCAACTTTTTCTCAAAAATATTTT
1 ATTTTTTTTAAAATTTTA-TTTTAAGAAAAGTTGATAC-TTTCAACTTTTCCTCAAAAATAATTT
24323401 TTTGA
64 TTTGA
24323406 A
1 A
24323407 AATTTTATTT
Statistics
Matches: 121, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
69 31 0.26
70 55 0.45
71 29 0.24
72 6 0.05
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.51
Consensus pattern (68 bp):
ATTTTTTTTAAAATTTTATTTTAAGAAAAGTTGATACTTTCAACTTTTCCTCAAAAATAATTTTT
TGA
Found at i:24328845 original size:83 final size:83
Alignment explanation
Indices: 24328706--24328874 Score: 329
Period size: 83 Copynumber: 2.0 Consensus size: 83
24328696 AAAATCCAAA
24328706 TATGATTCATTTACCATTTATAGTACTCCTATCATTTAAACTCTAGATTCTAGTCATAAGCATTC
1 TATGATTCATTTACCATTTATAGTACTCCTATCATTTAAACTCTAGATTCTAGTCATAAGCATTC
24328771 CATATTCATAAAATATAC
66 CATATTCATAAAATATAC
*
24328789 TATGATTCATTTACCATTTATAGTACTCTTATCATTTAAACTCTAGATTCTAGTCATAAGCATTC
1 TATGATTCATTTACCATTTATAGTACTCCTATCATTTAAACTCTAGATTCTAGTCATAAGCATTC
24328854 CATATTCATAAAATATAC
66 CATATTCATAAAATATAC
24328872 TAT
1 TAT
24328875 ATATAGAGTC
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.35, C:0.18, G:0.06, T:0.41
Consensus pattern (83 bp):
TATGATTCATTTACCATTTATAGTACTCCTATCATTTAAACTCTAGATTCTAGTCATAAGCATTC
CATATTCATAAAATATAC
Found at i:24332511 original size:2 final size:2
Alignment explanation
Indices: 24332504--24332529 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24332494 GTGCATGCTC
24332504 GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT
24332530 CTATATGTGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:24334455 original size:12 final size:12
Alignment explanation
Indices: 24334438--24334464 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
24334428 ACTAAGATAG
24334438 CATCATGCATCC
1 CATCATGCATCC
24334450 CATCATGCATCC
1 CATCATGCATCC
24334462 CAT
1 CAT
24334465 AATAGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.41, G:0.07, T:0.26
Consensus pattern (12 bp):
CATCATGCATCC
Found at i:24334569 original size:25 final size:27
Alignment explanation
Indices: 24334513--24334571 Score: 68
Period size: 25 Copynumber: 2.2 Consensus size: 27
24334503 ATTTGTGACT
**
24334513 TTTTCACTTATAATTCGTATAAAATTTT
1 TTTTCACTTATAATTCG-ATAAAATTCA
*
24334541 TTTTCACTTATAA-TC-ATATAATTCA
1 TTTTCACTTATAATTCGATAAAATTCA
24334566 TTTTCA
1 TTTTCA
24334572 TTACCAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 13 0.46
27 2 0.07
28 13 0.46
ACGTcount: A:0.32, C:0.14, G:0.02, T:0.53
Consensus pattern (27 bp):
TTTTCACTTATAATTCGATAAAATTCA
Found at i:24336278 original size:2 final size:2
Alignment explanation
Indices: 24336271--24336297 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24336261 TTTTATTGTT
24336271 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24336298 TGAACATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24351878 original size:2 final size:2
Alignment explanation
Indices: 24351871--24351896 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24351861 TCTTTATAAG
24351871 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
24351897 CTTGATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24352622 original size:18 final size:18
Alignment explanation
Indices: 24352599--24352741 Score: 75
Period size: 18 Copynumber: 7.6 Consensus size: 18
24352589 AATTGTACTT
24352599 ATAAATAATATTATATTA
1 ATAAATAATATTATATTA
**
24352617 ATAAATTTTATTAATTTATTTA
1 ATAAATAATATT-A--TA-TTA
24352639 ATAAATATTATAATAATATATTA
1 ATAAATA--AT-AT--TATATTA
*
24352662 GTAAATAATA-TATTATTA
1 ATAAATAATATTA-TATTA
24352680 ATAAATAATA-TACTATTA
1 ATAAATAATATTA-TATTA
24352698 AT--AT-A-A-TATATTA
1 ATAAATAATATTATATTA
*
24352711 ATAAATATTATAATATATTA
1 ATAAATA--ATATTATATTA
*
24352731 GTAAATAATAT
1 ATAAATAATAT
24352742 AAAAAATAAT
Statistics
Matches: 99, Mismatches: 9, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
13 7 0.07
14 3 0.03
15 3 0.03
16 2 0.02
17 2 0.02
18 37 0.37
19 2 0.02
20 14 0.14
21 4 0.04
22 9 0.09
23 9 0.09
24 3 0.03
25 2 0.02
26 1 0.01
27 1 0.01
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (18 bp):
ATAAATAATATTATATTA
Found at i:24352639 original size:22 final size:24
Alignment explanation
Indices: 24352604--24352726 Score: 114
Period size: 23 Copynumber: 5.2 Consensus size: 24
24352594 TACTTATAAA
*
24352604 TAATATTATATTAATAAATTTTAT
1 TAATATTATATTAATAAATATTAT
24352628 TAAT-TTAT-TTAATAAATATTA-
1 TAATATTATATTAATAAATATTAT
* * *
24352649 TAATAATATATTAGTAAATAATA-
1 TAATATTATATTAATAAATATTAT
* * *
24352672 TATTATTA-ATAAATAATATACTAT
1 TAATATTATATTAATAA-ATATTAT
24352696 TAATATAATATATTAATAAATATTA-
1 TAATAT--TATATTAATAAATATTAT
24352721 TAATAT
1 TAATAT
24352727 ATTAGTAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 13
0.76 0.11 0.12
Matches are distributed among these distances:
21 4 0.05
22 21 0.26
23 26 0.32
24 9 0.11
25 6 0.08
26 7 0.09
27 7 0.09
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (24 bp):
TAATATTATATTAATAAATATTAT
Found at i:24352742 original size:15 final size:15
Alignment explanation
Indices: 24352638--24352722 Score: 77
Period size: 15 Copynumber: 5.6 Consensus size: 15
24352628 TAATTTATTT
24352638 AATAA-ATATT-AT-
1 AATAATATATTAATA
*
24352650 AATAATATATTAGTA
1 AATAATATATTAATA
24352665 AATAATATATTATTAATA
1 AAT-A-ATA-TATTAATA
* *
24352683 AATAATATACTATTA
1 AATAATATATTAATA
24352698 ATATAATATATTAATA
1 A-ATAATATATTAATA
*
24352714 AATATTATA
1 AATAATATA
24352723 ATATATTAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 11
0.77 0.09 0.14
Matches are distributed among these distances:
12 5 0.08
13 5 0.08
14 1 0.02
15 17 0.29
16 17 0.29
17 4 0.07
18 10 0.17
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (15 bp):
AATAATATATTAATA
Found at i:24352860 original size:16 final size:17
Alignment explanation
Indices: 24352839--24352870 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
24352829 TTTTAATATT
24352839 AATAATTTC-AATAATA
1 AATAATTTCAAATAATA
24352855 AATAATTTCAAATAAT
1 AATAATTTCAAATAAT
24352871 TTTTATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AATAATTTCAAATAATA
Found at i:24352894 original size:26 final size:26
Alignment explanation
Indices: 24352837--24352904 Score: 84
Period size: 26 Copynumber: 2.7 Consensus size: 26
24352827 TTTTTTAATA
*
24352837 TTAATAATTTCAATAATAAATAATTT
1 TTAATAATTTTAATAATAAATAATTT
** *
24352863 CAAATAATTTTTATAATAAATAATTT
1 TTAATAATTTTAATAATAAATAATTT
*
24352889 TTAAT-ATTTTATTAAT
1 TTAATAATTTTAATAAT
24352905 TATATTAATA
Statistics
Matches: 34, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
25 9 0.26
26 25 0.74
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (26 bp):
TTAATAATTTTAATAATAAATAATTT
Found at i:24353040 original size:14 final size:14
Alignment explanation
Indices: 24353016--24353055 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
24353006 TTTAAAAAAT
24353016 ATAAA-TATTTTTC
1 ATAAATTATTTTTC
*
24353029 ATAAATTATTTTTT
1 ATAAATTATTTTTC
*
24353043 AAAAATTATTTTT
1 ATAAATTATTTTT
24353056 TACGAAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 5 0.21
14 19 0.79
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (14 bp):
ATAAATTATTTTTC
Found at i:24353063 original size:15 final size:14
Alignment explanation
Indices: 24353021--24353057 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
24353011 AAAATATAAA
* *
24353021 TATTTTTCATAAAT
1 TATTTTTTAAAAAT
24353035 TATTTTTTAAAAAT
1 TATTTTTTAAAAAT
24353049 TATTTTTTA
1 TATTTTTTA
24353058 CGAAATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (14 bp):
TATTTTTTAAAAAT
Found at i:24356401 original size:33 final size:31
Alignment explanation
Indices: 24356364--24356457 Score: 104
Period size: 29 Copynumber: 3.1 Consensus size: 31
24356354 GCAAGTGATC
* *
24356364 AAATTATATCCAAATAATAAAAACTAAATAATT
1 AAATTATATTCAAATAATAAAAA-TAAA-AATA
*
24356397 AAATTATATTAAAATAAT--AAATAAAAATA
1 AAATTATATTCAAATAATAAAAATAAAAATA
* *
24356426 AAATTATATTCAAATAATGAAAA-AATAATA
1 AAATTATATTCAAATAATAAAAATAAAAATA
24356456 AA
1 AA
24356458 GTAATAGTCA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
29 20 0.37
30 12 0.22
31 6 0.11
33 16 0.30
ACGTcount: A:0.65, C:0.04, G:0.01, T:0.30
Consensus pattern (31 bp):
AAATTATATTCAAATAATAAAAATAAAAATA
Found at i:24358931 original size:22 final size:23
Alignment explanation
Indices: 24358899--24358943 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
24358889 ATTCGTGCTG
24358899 TTATATCATATAAAATATTATAT
1 TTATATCATATAAAATATTATAT
* *
24358922 TTATAT-ATATAATATTTTATAT
1 TTATATCATATAAAATATTATAT
24358944 AAAAATTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (23 bp):
TTATATCATATAAAATATTATAT
Found at i:24358954 original size:18 final size:18
Alignment explanation
Indices: 24358906--24358960 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
24358896 CTGTTATATC
24358906 ATATAAAATATTATA-TTT
1 ATATAAAA-ATTATATTTT
* *
24358924 ATAT--ATATAATATTTT
1 ATATAAAAATTATATTTT
*
24358940 ATATAAAAATTATATGTT
1 ATATAAAAATTATATTTT
24358958 ATA
1 ATA
24358961 ATTTGTATCA
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 5 0.17
16 8 0.28
18 16 0.55
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATATAAAAATTATATTTT
Found at i:24369089 original size:24 final size:25
Alignment explanation
Indices: 24369034--24369091 Score: 64
Period size: 25 Copynumber: 2.3 Consensus size: 25
24369024 TATATAGTAC
*
24369034 ATATATTTTTATTAAAAAAATATTA
1 ATATATATTTATTAAAAAAATATTA
* *
24369059 ATTTATATTTA-TAAAAAATTATTTAA
1 ATATATATTTATTAAAAAAATA-TT-A
24369085 ATATATA
1 ATATATA
24369092 AAATAAAAGT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 9 0.33
25 11 0.41
26 7 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
ATATATATTTATTAAAAAAATATTA
Found at i:24369091 original size:20 final size:22
Alignment explanation
Indices: 24369049--24369094 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
24369039 TTTTTATTAA
* *
24369049 AAAAATATTAATTTATATTTAT
1 AAAAATATTAATTTAAATATAT
24369071 AAAAA-ATT-ATTTAAATATAT
1 AAAAATATTAATTTAAATATAT
24369091 AAAA
1 AAAA
24369095 TAAAAGTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 3 0.14
22 5 0.23
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAAATATTAATTTAAATATAT
Found at i:24370337 original size:29 final size:29
Alignment explanation
Indices: 24370288--24370357 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 29
24370278 TTAGATTAAT
* *
24370288 TATA-ATTAATATAATTTTTATTGAAAAAA
1 TATATATTAATATAATATTTA-TAAAAAAA
24370317 TATATATTAATATAA-ATTTATAAAAAAA
1 TATATATTAATATAATATTTATAAAAAAA
24370345 T-TAT-TTAAATATA
1 TATATATT-AATATA
24370358 TAAAATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
26 2 0.05
27 9 0.24
28 8 0.22
29 8 0.22
30 10 0.27
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (29 bp):
TATATATTAATATAATATTTATAAAAAAA
Found at i:24374118 original size:2 final size:2
Alignment explanation
Indices: 24374111--24374137 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24374101 GTTAGTGAAC
24374111 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
24374138 AGTATACCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:24378485 original size:14 final size:16
Alignment explanation
Indices: 24378452--24378490 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
24378442 ATTTTCATAT
24378452 TTAAAATTATTAAGTA
1 TTAAAATTATTAAGTA
*
24378468 TTAAAATT-TT-ATTA
1 TTAAAATTATTAAGTA
24378482 TTAAAATTA
1 TTAAAATTA
24378491 AGAGTTCATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 11 0.52
15 2 0.10
16 8 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (16 bp):
TTAAAATTATTAAGTA
Found at i:24381079 original size:20 final size:22
Alignment explanation
Indices: 24381048--24381089 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
24381038 ATTATTTTTA
24381048 TTATATTCATATC-AAAATTAT
1 TTATATTCATATCTAAAATTAT
24381069 TTATATT-ATATCTAAAATTAT
1 TTATATTCATATCTAAAATTAT
24381090 GTTTAATACA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATATTCATATCTAAAATTAT
Found at i:24384600 original size:13 final size:12
Alignment explanation
Indices: 24384573--24384627 Score: 67
Period size: 13 Copynumber: 4.4 Consensus size: 12
24384563 TTTATTTGTG
24384573 TATAATATAAAT
1 TATAATATAAAT
24384585 TATAATATATAAT
1 TATAATATA-AAT
*
24384598 TATTATATAAAAT
1 TATAATAT-AAAT
24384611 TA-AATATAAAT
1 TATAATATAAAT
24384622 ATATAA
1 -TATAA
24384628 ATTTTAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
11 4 0.11
12 15 0.41
13 17 0.46
14 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATAATATAAAT
Found at i:24384607 original size:25 final size:24
Alignment explanation
Indices: 24384577--24384653 Score: 67
Period size: 24 Copynumber: 3.3 Consensus size: 24
24384567 TTTGTGTATA
24384577 ATATAAATTATAATATATAATTATT
1 ATATAAATT-TAATATATAATTATT
*
24384602 ATATAAAATTAA-ATATAA--A-T
1 ATATAAATTTAATATATAATTATT
24384622 ATATAAATTTTAATA-AT-ATATATT
1 ATATAAA-TTTAATATATAAT-TATT
*
24384646 GTATAAAT
1 ATATAAAT
24384654 ATACGAAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 14
0.72 0.05 0.23
Matches are distributed among these distances:
20 9 0.21
21 7 0.16
22 1 0.02
23 8 0.19
24 10 0.23
25 8 0.19
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (24 bp):
ATATAAATTTAATATATAATTATT
Found at i:24384969 original size:15 final size:17
Alignment explanation
Indices: 24384937--24384970 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24384927 TGTTAAATTT
24384937 TTATTAATATTGAAAAAA
1 TTATTAATATTG-AAAAA
24384955 TTATTAA-ATTGAAAAA
1 TTATTAATATTGAAAAA
24384971 AAGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
TTATTAATATTGAAAAA
Found at i:24384972 original size:18 final size:18
Alignment explanation
Indices: 24384937--24384971 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
24384927 TGTTAAATTT
24384937 TTATTAATATTGAAAAAA
1 TTATTAATATTGAAAAAA
24384955 TTATTAA-ATTGAAAAAA
1 TTATTAATATTGAAAAAA
24384972 AGAAAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
TTATTAATATTGAAAAAA
Found at i:24385972 original size:16 final size:16
Alignment explanation
Indices: 24385951--24386005 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
24385941 ATATATTTAT
24385951 ATTATATTTTATAAAA
1 ATTATATTTTATAAAA
*
24385967 ATTATATATTAT--AA
1 ATTATATTTTATAAAA
*
24385981 TTTATATTTGATATAAAA
1 ATTATATTT--TATAAAA
24385999 ATTATAT
1 ATTATAT
24386006 ATCATAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
14 9 0.29
16 14 0.45
18 8 0.26
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATTATATTTTATAAAA
Found at i:24386000 original size:32 final size:30
Alignment explanation
Indices: 24385939--24386015 Score: 104
Period size: 32 Copynumber: 2.5 Consensus size: 30
24385929 TATTAATAAT
24385939 TTATATATT-T-ATATTATATTTTATAAAAA
1 TTATATATTATAAT-TTATATTTTATAAAAA
24385968 TTATATATTATAATTTATATTTGATATAAAAA
1 TTATATATTATAATTTATATTT--TATAAAAA
*
24386000 TTATATATCATAATTT
1 TTATATATTATAATTT
24386016 CGATGTAAAA
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
29 9 0.21
30 9 0.21
31 2 0.05
32 23 0.53
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (30 bp):
TTATATATTATAATTTATATTTTATAAAAA
Found at i:24386042 original size:27 final size:24
Alignment explanation
Indices: 24385974--24386042 Score: 57
Period size: 27 Copynumber: 2.6 Consensus size: 24
24385964 AAAATTATAT
*
24385974 ATTATAATTTATATTTGATATAAAA
1 ATTA-AATATATATTTGATATAAAA
* *
24385999 ATTATATATCATAATTTCGATGTAAAA
1 ATTAAATAT-AT-ATTT-GATATAAAA
24386026 ATATAAAATATATATTT
1 AT-T-AAATATATATTT
24386043 ATTTTATTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 3 0.09
25 6 0.17
26 4 0.11
27 14 0.40
28 3 0.09
29 5 0.14
ACGTcount: A:0.48, C:0.03, G:0.04, T:0.45
Consensus pattern (24 bp):
ATTAAATATATATTTGATATAAAA
Found at i:24386115 original size:29 final size:29
Alignment explanation
Indices: 24386083--24386142 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
24386073 AAAATTTTAA
* * * *
24386083 ATTATGTTATTTTTATATTTTATATTTTT
1 ATTATGTTAATATTATATTTTAAATTATT
*
24386112 ATTATTTTAATATTATATTTTAAATTATT
1 ATTATGTTAATATTATATTTTAAATTATT
24386141 AT
1 AT
24386143 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (29 bp):
ATTATGTTAATATTATATTTTAAATTATT
Found at i:24386149 original size:15 final size:15
Alignment explanation
Indices: 24386095--24386150 Score: 71
Period size: 15 Copynumber: 3.8 Consensus size: 15
24386085 TATGTTATTT
* *
24386095 TTATATTTTATATTT
1 TTATATTTTAAATTA
24386110 TTATTATTTT-AA-TA
1 TTA-TATTTTAAATTA
24386124 TTATATTTTAAATTA
1 TTATATTTTAAATTA
24386139 TTATATTTTAAA
1 TTATATTTTAAA
24386151 AAAAACGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
13 6 0.17
14 6 0.17
15 18 0.50
16 6 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATATTTTAAATTA
Found at i:24386475 original size:16 final size:17
Alignment explanation
Indices: 24386444--24386490 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
24386434 GGTAATTTTC
* *
24386444 AATATAATAGATAATAT
1 AATATAAAATATAATAT
*
24386461 GATATAAAA-ATAATAT
1 AATATAAAATATAATAT
*
24386477 AATTTAAAATATAA
1 AATATAAAATATAA
24386491 AAATAAAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (17 bp):
AATATAAAATATAATAT
Found at i:24387069 original size:7 final size:7
Alignment explanation
Indices: 24387057--24387089 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
24387047 TTATTGTGTG
24387057 TTTTATA
1 TTTTATA
24387064 TTTTATA
1 TTTTATA
24387071 TTTTA-A
1 TTTTATA
24387077 GTTTTATA
1 -TTTTATA
24387085 TTTTA
1 TTTTA
24387090 AAAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 1 0.04
7 22 0.92
8 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (7 bp):
TTTTATA
Found at i:24387179 original size:14 final size:15
Alignment explanation
Indices: 24387160--24387192 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
24387150 ATTTTTGTTT
24387160 TAAAAATATG-AAAA
1 TAAAAATATGTAAAA
24387174 TAAAAATATGTAAAA
1 TAAAAATATGTAAAA
24387189 -AAAA
1 TAAAA
24387193 GTGGTTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (15 bp):
TAAAAATATGTAAAA
Found at i:24387272 original size:15 final size:15
Alignment explanation
Indices: 24387248--24387285 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
24387238 TATTAAAATA
24387248 ATAATATTTACTAAT
1 ATAATATTTACTAAT
* *
24387263 ATAGTATTTATTAAT
1 ATAATATTTACTAAT
24387278 ATAATATT
1 ATAATATT
24387286 ATTTATTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.50
Consensus pattern (15 bp):
ATAATATTTACTAAT
Found at i:24387327 original size:21 final size:21
Alignment explanation
Indices: 24387309--24387518 Score: 93
Period size: 21 Copynumber: 10.6 Consensus size: 21
24387299 TATATTATCT
24387309 ATAA-ATATTATATTATTATA
1 ATAATATATTATATTATTATA
24387329 ATAATATATTATATTCA-TATA
1 ATAATATATTATATT-ATTATA
* *
24387350 AT-ATATATAAATAAATATTATA
1 ATAATATAT-TAT-ATTATTATA
*
24387372 TTAATCATA-TAT-TTCA-T-TA
1 ATAAT-ATATTATATT-ATTATA
*
24387391 AT-ATAATATTATATTA--AAA
1 ATAAT-ATATTATATTATTATA
* *
24387410 AGAAATAATATTATGTTATTA-A
1 A-TAAT-ATATTATATTATTATA
24387432 TATAATATATTAT-TTA-TATA
1 -ATAATATATTATATTATTATA
* *
24387452 ATAA-ATATAATAATATTA-A
1 ATAATATATTATATTATTATA
* *
24387471 TTAATATCTTAT-TTA-TATA
1 ATAATATATTATATTATTATA
*
24387490 ATAA-A-A--ATATTATTTTA
1 ATAATATATTATATTATTATA
24387507 ATAATATATTAT
1 ATAATATATTAT
24387519 TTGTAACATC
Statistics
Matches: 143, Mismatches: 20, Indels: 53
0.66 0.09 0.25
Matches are distributed among these distances:
15 2 0.01
16 3 0.02
17 7 0.05
18 15 0.10
19 28 0.20
20 25 0.17
21 42 0.29
22 14 0.10
23 4 0.03
24 3 0.02
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (21 bp):
ATAATATATTATATTATTATA
Found at i:24387334 original size:51 final size:51
Alignment explanation
Indices: 24387270--24387473 Score: 142
Period size: 51 Copynumber: 4.1 Consensus size: 51
24387260 AATATAGTAT
* * **
24387270 TTATTAATATAATATTATT-TATT-TTTTAATATATTATCTATAAATATTATA
1 TTATTAATATAATA-TATTATATTCATATAATATA-TATAAATAAATATTATA
24387321 TTATT-ATAATAATATATTATATTCATATAATATATATAAATAAATATTATA
1 TTATTAAT-ATAATATATTATATTCATATAATATATATAAATAAATATTATA
* * * * * * * *
24387372 TTAATCATAT-ATTTCATTA-ATATAATATTATAT-TAAAAAGAAATAATATTATG
1 TTATTAATATAATAT-ATTATAT-TCATATAATATAT-ATAA-ATA-AATATTATA
*
24387425 TTATTAATATAATATATTAT-TT-ATATAATAAATAT-AAT-AATATTA-A
1 TTATTAATATAATATATTATATTCATATAATATATATAAATAAATATTATA
24387471 TTA
1 TTA
24387474 ATATCTTATT
Statistics
Matches: 122, Mismatches: 19, Indels: 29
0.72 0.11 0.17
Matches are distributed among these distances:
46 3 0.02
47 7 0.06
49 1 0.01
50 13 0.11
51 60 0.49
52 14 0.11
53 21 0.17
54 3 0.02
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (51 bp):
TTATTAATATAATATATTATATTCATATAATATATATAAATAAATATTATA
Found at i:24387336 original size:16 final size:16
Alignment explanation
Indices: 24387296--24387519 Score: 69
Period size: 16 Copynumber: 13.8 Consensus size: 16
24387286 ATTTATTTTT
24387296 TAATATATTATCTATAAA
1 TAATATATTAT-TAT-AA
*
24387314 TATTATATTATTATAA
1 TAATATATTATTATAA
24387330 TAATATATTA-TATTCATA
1 TAATATATTATTA-T-A-A
24387348 TAATATA-TA-TA-AA
1 TAATATATTATTATAA
24387361 TAA-ATATTA-TATTAA
1 TAATATATTATTA-TAA
* *
24387376 TCATATATT-TCAT--
1 TAATATATTATTATAA
* *
24387389 TAATATAATATTATAT
1 TAATATATTATTATAA
** *
24387405 TAA-A-AAGA-AATAA
1 TAATATATTATTATAA
* *
24387418 TATTATGTTATTA-ATA
1 TAATATATTATTATA-A
24387434 TAATATATTATTTATATAA
1 TAATATATTA--T-TATAA
* *
24387453 TAAATATAATAATATTAA
1 T-AATATATTATTA-TAA
*
24387471 TTAATATCTTATTTATATAA
1 -TAATATATTA--T-TATAA
* *
24387491 TAAAAATATTATTTTAA
1 T-AATATATTATTATAA
24387508 TAATATATTATT
1 TAATATATTATT
24387520 TGTAACATCA
Statistics
Matches: 154, Mismatches: 26, Indels: 54
0.66 0.11 0.23
Matches are distributed among these distances:
12 3 0.02
13 20 0.13
14 8 0.05
15 10 0.06
16 41 0.27
17 15 0.10
18 30 0.19
19 6 0.04
20 19 0.12
21 2 0.01
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (16 bp):
TAATATATTATTATAA
Found at i:24387476 original size:38 final size:37
Alignment explanation
Indices: 24387426--24387520 Score: 129
Period size: 38 Copynumber: 2.5 Consensus size: 37
24387416 AATATTATGT
*
24387426 TATTAATATAATATATTATTTATATAATAAATATAATAA
1 TATTAAT-TAATATATTATTTATATAATAAAAAT-ATAA
* *
24387465 TATTAATTAATATCTTATTTATATAATAAAAATATTA
1 TATTAATTAATATATTATTTATATAATAAAAATATAA
*
24387502 TTTTAA-TAATATATTATTT
1 TATTAATTAATATATTATTT
24387521 GTAACATCAC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
36 12 0.24
37 8 0.16
38 24 0.47
39 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (37 bp):
TATTAATTAATATATTATTTATATAATAAAAATATAA
Done.