Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 131 of 133
Found at i:25746815 original size:2 final size:2
Alignment explanation
Indices: 25746808--25746840 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
25746798 ATTAATGAAG
25746808 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
25746841 CATTTCTATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25749833 original size:6 final size:6
Alignment explanation
Indices: 25749800--25749850 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
25749790 TAGGGTGCAG
* * * *
25749800 CAGCAC CAG--C CAGCAT CAGCAT CAGCAC CAGCAC CAACAC CAACAC
1 CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC CAGCAC
25749846 CAGCA
1 CAGCA
25749851 ACAACCCCCT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
4 4 0.10
6 35 0.90
ACGTcount: A:0.37, C:0.45, G:0.14, T:0.04
Consensus pattern (6 bp):
CAGCAC
Found at i:25753318 original size:19 final size:18
Alignment explanation
Indices: 25753294--25753343 Score: 55
Period size: 19 Copynumber: 2.7 Consensus size: 18
25753284 ATTAAAATAT
25753294 AAATATGATATAAATTATA
1 AAATAT-ATATAAATTATA
* *
25753313 AAATATATTTAAATTTTA
1 AAATATATATAAATTATA
*
25753331 AATATAAATATAA
1 AA-ATATATATAA
25753344 TATATTTAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
AAATATATATAAATTATA
Found at i:25753325 original size:18 final size:17
Alignment explanation
Indices: 25753276--25753336 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 17
25753266 TATGTAATAA
*
25753276 TATAAAT-TA-TTAAAA
1 TATAAATATATTTAAAT
*
25753291 TATAAATATGATATAAAT
1 TATAAATAT-ATTTAAAT
25753309 TATAAAATATATTTAAAT
1 TAT-AAATATATTTAAAT
*
25753327 TTTAAATATA
1 TATAAATATA
25753337 AATATAATAT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
15 7 0.18
16 1 0.03
17 8 0.21
18 16 0.42
19 6 0.16
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TATAAATATATTTAAAT
Found at i:25753409 original size:15 final size:15
Alignment explanation
Indices: 25753389--25753471 Score: 65
Period size: 15 Copynumber: 6.0 Consensus size: 15
25753379 TTAATACATT
25753389 TAAATATGATATAAA
1 TAAATATGATATAAA
25753404 TAAATATGA-AT-AA
1 TAAATATGATATAAA
*
25753417 T--ATAT-ATATGAA
1 TAAATATGATATAAA
* *
25753429 TAGATACGAT-TAACA
1 TAAATATGATATAA-A
*
25753444 TAAATAT-ATATATA
1 TAAATATGATATAAA
25753458 TAAATATGAT-TAAA
1 TAAATATGATATAAA
25753472 ATAATAAATA
Statistics
Matches: 54, Mismatches: 6, Indels: 17
0.70 0.08 0.22
Matches are distributed among these distances:
10 1 0.02
11 6 0.11
12 3 0.06
13 3 0.06
14 20 0.37
15 21 0.39
ACGTcount: A:0.55, C:0.02, G:0.07, T:0.35
Consensus pattern (15 bp):
TAAATATGATATAAA
Found at i:25753425 original size:25 final size:25
Alignment explanation
Indices: 25753388--25753482 Score: 72
Period size: 29 Copynumber: 3.8 Consensus size: 25
25753378 ATTAATACAT
25753388 TTAA-ATATGATATAAATAAATATGA
1 TTAATATAT-ATATAAATAAATATGA
* * * *
25753413 ATAATATATATATGAATAGATACGA
1 TTAATATATATATAAATAAATATGA
*
25753438 TTAACATAAATATATATATATAAATATGA
1 TT-A-AT--ATATATATAAATAAATATGA
25753467 TTAA-A-ATA-ATAAATAA
1 TTAATATATATATAAATAA
25753483 TTATAAACTA
Statistics
Matches: 55, Mismatches: 10, Indels: 13
0.71 0.13 0.17
Matches are distributed among these distances:
22 7 0.13
23 3 0.05
24 1 0.02
25 17 0.31
26 5 0.09
27 3 0.05
28 1 0.02
29 18 0.33
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (25 bp):
TTAATATATATATAAATAAATATGA
Found at i:25753468 original size:29 final size:30
Alignment explanation
Indices: 25753415--25753475 Score: 79
Period size: 29 Copynumber: 2.0 Consensus size: 30
25753405 AAATATGAAT
* *
25753415 AATATATATATGAATAGATACGATTAACATA
1 AATATATATAT-AATAAATACGATTAAAATA
*
25753446 AATATATATAT-ATAAATATGATTAAAATA
1 AATATATATATAATAAATACGATTAAAATA
25753475 A
1 A
25753476 TAAATAATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 16 0.59
31 11 0.41
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATATATATAATAAATACGATTAAAATA
Found at i:25753542 original size:26 final size:24
Alignment explanation
Indices: 25753513--25753571 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 24
25753503 ATAACTTAAT
*
25753513 AAATTTGACACATTAATAATATAAAA
1 AAATTT-ACACATTAA-AAAATAAAA
*
25753539 AAATAATTACATATTAAAAAATAAAA
1 AAAT--TTACACATTAAAAAATAAAA
25753565 AAATTTA
1 AAATTTA
25753572 ATACACATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
24 3 0.10
26 16 0.55
27 8 0.28
28 2 0.07
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (24 bp):
AAATTTACACATTAAAAAATAAAA
Found at i:25756097 original size:30 final size:30
Alignment explanation
Indices: 25756054--25756114 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
25756044 AATTAATTAA
* * * *
25756054 TTAATTATATATATTTATATAATGATATTT
1 TTAAATATATATATTTAAAAAATAATATTT
*
25756084 TTAAATATTTATATTTAAAAAATAATATTT
1 TTAAATATATATATTTAAAAAATAATATTT
25756114 T
1 T
25756115 ATTAATTTCG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
TTAAATATATATATTTAAAAAATAATATTT
Found at i:25759511 original size:15 final size:16
Alignment explanation
Indices: 25759491--25759523 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
25759481 ATGCACATAC
25759491 ATGAAAAAAAAAA-AA
1 ATGAAAAAAAAAAGAA
25759506 ATGAAAAAAAAAAGAA
1 ATGAAAAAAAAAAGAA
25759522 AT
1 AT
25759524 TTGATTATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (16 bp):
ATGAAAAAAAAAAGAA
Found at i:25765257 original size:14 final size:15
Alignment explanation
Indices: 25765238--25765266 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
25765228 TAACTCATGC
25765238 CATTT-GTTTTTTGT
1 CATTTGGTTTTTTGT
25765252 CATTTGGTTTTTTGT
1 CATTTGGTTTTTTGT
25765267 GCTGCAAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.07, C:0.07, G:0.17, T:0.69
Consensus pattern (15 bp):
CATTTGGTTTTTTGT
Found at i:25773377 original size:11 final size:10
Alignment explanation
Indices: 25773355--25773394 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
25773345 AGAGAGAAGG
25773355 AAAATT-AAA
1 AAAATTAAAA
25773364 AAAATTGAAAA
1 AAAATT-AAAA
*
25773375 AAAATAAAAA
1 AAAATTAAAA
25773385 AAAATTAAAA
1 AAAATTAAAA
25773395 GGAAATGTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
9 6 0.22
10 13 0.48
11 8 0.30
ACGTcount: A:0.80, C:0.00, G:0.03, T:0.17
Consensus pattern (10 bp):
AAAATTAAAA
Found at i:25774208 original size:41 final size:41
Alignment explanation
Indices: 25774163--25774240 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 41
25774153 TTTTATTAAA
25774163 TTTATAT-ATAATTATTATTAAAATT-TTAAATTATATTATTT
1 TTTATATCATAATTA-TATT-AAATTATTAAATTATATTATTT
* * *
25774204 TTTATATCATATTTATATTATATTATTATATTATATT
1 TTTATATCATAATTATATTAAATTATTAAATTATATT
25774241 TTAAATTATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 4 0.12
41 22 0.69
42 6 0.19
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (41 bp):
TTTATATCATAATTATATTAAATTATTAAATTATATTATTT
Found at i:25774220 original size:11 final size:11
Alignment explanation
Indices: 25774193--25774241 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
25774183 AAATTTTAAA
*
25774193 TTATATTATTTT
1 TTATATTA-TAT
*
25774205 TTATATCATAT
1 TTATATTATAT
25774216 TTATATTATATT
1 TTATATTATA-T
25774228 ATTATATTATAT
1 -TTATATTATAT
25774240 TT
1 TT
25774242 TAAATTATCA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
11 13 0.41
12 9 0.28
13 10 0.31
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATATTATAT
Found at i:25781466 original size:12 final size:12
Alignment explanation
Indices: 25781449--25781473 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25781439 ACAATTCATC
25781449 ATTTTTCTTGCT
1 ATTTTTCTTGCT
25781461 ATTTTTCTTGCT
1 ATTTTTCTTGCT
25781473 A
1 A
25781474 AGAAAAGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.12, C:0.16, G:0.08, T:0.64
Consensus pattern (12 bp):
ATTTTTCTTGCT
Found at i:25788600 original size:2 final size:2
Alignment explanation
Indices: 25788593--25788618 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25788583 TTTGGAACAA
25788593 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25788619 CTTCTACCCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25796392 original size:21 final size:22
Alignment explanation
Indices: 25796355--25796402 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
25796345 GTATAATTTT
*
25796355 TAAAAAATTATGTATTTC-TCC
1 TAAAAAATTATGTATTTCATAC
*
25796376 TAAAAAATTGT-TAATTTCATAC
1 TAAAAAATTATGT-ATTTCATAC
25796398 TAAAA
1 TAAAA
25796403 GTTCACATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 15 0.65
22 7 0.30
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (22 bp):
TAAAAAATTATGTATTTCATAC
Found at i:25805207 original size:60 final size:60
Alignment explanation
Indices: 25805109--25805227 Score: 193
Period size: 60 Copynumber: 2.0 Consensus size: 60
25805099 TTATAAAAAC
* * *
25805109 CTTCAGAACCTTGGAAACTCTGGTAAGAATTAGTTGATGTTGTGGCGAGTAGGGAGATGG
1 CTTCAGAACCTTGGAAACTCTGGTAAGAATTAGATGATGTTGTGGAGAATAGGGAGATGG
* *
25805169 CTTCAGAACCTTGGACACTCTGGTAAGAATTAGATGATGTTGTGGAGAATGGGGAGATG
1 CTTCAGAACCTTGGAAACTCTGGTAAGAATTAGATGATGTTGTGGAGAATAGGGAGATG
25805228 CCAATCATTG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
60 54 1.00
ACGTcount: A:0.28, C:0.12, G:0.33, T:0.28
Consensus pattern (60 bp):
CTTCAGAACCTTGGAAACTCTGGTAAGAATTAGATGATGTTGTGGAGAATAGGGAGATGG
Found at i:25808869 original size:14 final size:14
Alignment explanation
Indices: 25808850--25808879 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
25808840 TAGCCTTCAG
25808850 AAAAAAAAAAAAAC
1 AAAAAAAAAAAAAC
*
25808864 AAAAAAACAAAAAC
1 AAAAAAAAAAAAAC
25808878 AA
1 AA
25808880 CGAAATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAAAC
Found at i:25818499 original size:2 final size:2
Alignment explanation
Indices: 25818494--25818525 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
25818484 TTTTTTATTC
25818494 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25818526 CTTTTTGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25823175 original size:21 final size:22
Alignment explanation
Indices: 25823146--25823187 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
25823136 AATGGTAGCT
*
25823146 AAATGCCCA-CTTGACTTTTGC
1 AAATGCCCATCTTCACTTTTGC
*
25823167 AAATTCCCATCTTCACTTTTG
1 AAATGCCCATCTTCACTTTTG
25823188 TATTCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.24, C:0.29, G:0.10, T:0.38
Consensus pattern (22 bp):
AAATGCCCATCTTCACTTTTGC
Found at i:25826106 original size:12 final size:12
Alignment explanation
Indices: 25826089--25826115 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25826079 AAAACTCAAT
25826089 AAAAGAAAAAAG
1 AAAAGAAAAAAG
25826101 AAAAGAAAAAAG
1 AAAAGAAAAAAG
25826113 AAA
1 AAA
25826116 CCCCACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:25826326 original size:2 final size:2
Alignment explanation
Indices: 25826321--25826376 Score: 112
Period size: 2 Copynumber: 28.0 Consensus size: 2
25826311 CTTTTTCTCT
25826321 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
25826363 GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA
25826377 TGTATGTGGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:25833054 original size:2 final size:2
Alignment explanation
Indices: 25833047--25833083 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
25833037 TACAGCAGCA
25833047 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
25833084 AGGGGCAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25834768 original size:6 final size:6
Alignment explanation
Indices: 25834757--25834785 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
25834747 GCATAATCAC
25834757 TGACAG TGACAG TGACAG TGACAG TGACA
1 TGACAG TGACAG TGACAG TGACAG TGACA
25834786 AGTATTTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.34, C:0.17, G:0.31, T:0.17
Consensus pattern (6 bp):
TGACAG
Found at i:25836091 original size:2 final size:2
Alignment explanation
Indices: 25836079--25836107 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
25836069 TACCCTCTAC
25836079 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25836108 CCTGTCCTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25838562 original size:2 final size:2
Alignment explanation
Indices: 25838555--25838580 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25838545 GTAATGCACC
25838555 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25838581 CTGTGAACAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25842850 original size:16 final size:16
Alignment explanation
Indices: 25842831--25842862 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25842821 TTAAATCATA
*
25842831 TTATTTTTATAATTTT
1 TTATTTATATAATTTT
25842847 TTATTTATATAATTTT
1 TTATTTATATAATTTT
25842863 AATATCATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
TTATTTATATAATTTT
Found at i:25846435 original size:2 final size:2
Alignment explanation
Indices: 25846428--25846463 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
25846418 GGTTGGTTAG
25846428 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25846464 GATAAAGGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25850115 original size:17 final size:17
Alignment explanation
Indices: 25850089--25850147 Score: 50
Period size: 17 Copynumber: 3.5 Consensus size: 17
25850079 TTAAGCTAGA
*
25850089 TTTAATTATTTTAAAAT
1 TTTAAATATTTTAAAAT
**
25850106 TTTAAATATTATTTTAA-
1 TTTAAATATT-TTAAAAT
*
25850123 TTTAAA-ATTTTAATAT
1 TTTAAATATTTTAAAAT
25850139 ATTTAAATA
1 -TTTAAATA
25850148 AATTTTAATA
Statistics
Matches: 32, Mismatches: 6, Indels: 7
0.71 0.13 0.16
Matches are distributed among these distances:
15 3 0.09
16 3 0.09
17 21 0.66
18 5 0.16
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTAAATATTTTAAAAT
Found at i:25850135 original size:33 final size:33
Alignment explanation
Indices: 25850096--25850168 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
25850086 AGATTTAATT
* *
25850096 ATTTTAAAAT-TTTAAATATTATTTTAATTTAAA
1 ATTTTAAAATATTTAAATA-AATTTTAATATAAA
*
25850129 ATTTTAATATATTTAAATAAATTTTAATATAAA
1 ATTTTAAAATATTTAAATAAATTTTAATATAAA
*
25850162 ATATTAA
1 ATTTTAA
25850169 TTTTATTTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
33 27 0.77
34 8 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (33 bp):
ATTTTAAAATATTTAAATAAATTTTAATATAAA
Found at i:25850201 original size:21 final size:21
Alignment explanation
Indices: 25850177--25850218 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
25850167 AATTTTATTT
25850177 TATAAAAATTAAAAAAATATA
1 TATAAAAATTAAAAAAATATA
25850198 TATAAAAATTAAAAAAATATA
1 TATAAAAATTAAAAAAATATA
25850219 ATTCGATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
TATAAAAATTAAAAAAATATA
Found at i:25850989 original size:16 final size:15
Alignment explanation
Indices: 25850970--25851023 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 15
25850960 AATTTTGATT
25850970 TTTTAAAATTTAATAA
1 TTTT-AAATTTAATAA
*
25850986 TTTTATATTTATATAA
1 TTTTAAATTTA-ATAA
25851002 TTTTAAATTTAAATAA
1 TTTTAAATTT-AATAA
25851018 TTTTAA
1 TTTTAA
25851024 CATATTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
15 6 0.18
16 27 0.79
17 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTTAAATTTAATAA
Found at i:25858542 original size:119 final size:117
Alignment explanation
Indices: 25858326--25858564 Score: 322
Period size: 119 Copynumber: 2.0 Consensus size: 117
25858316 TGAATTGTGC
* *
25858326 TTGCTATTATGTGAGATTATATATGAATAGTTGGATTTTGGTAATGAAATGGAATAAGATTGTTG
1 TTGCTATTATGTGAGATTACATATGAATAGTTGGATTTTGGAAATGAAATGGAATAAGATTGTTG
* * * *
25858391 GTTAATTTCAATTTGGATTCTTTTTTTACTAATTTTGAGTTTGTGCTTACTCAT
66 GTTAATTTCAATTTGCATACTTTTTTTACTAA-TAT-AGTTTGTCCTTACTCAT
* *
25858445 TTGCTATTATGTGAGATTCCATATGAATAGTTGCG-TTTTGGAAATGAAATGGAATTAGATT-TT
1 TTGCTATTATGTGAGATTACATATGAATAGTTG-GATTTTGGAAATGAAATGGAATAAGATTGTT
* *
25858508 GGGTTAATTTCAGTTTGCATACTTTGTTTT-CTAATATAGTTTGTCCTTACTCCT
65 -GGTTAATTTCAATTTGCATACTTT-TTTTACTAATATAGTTTGTCCTTACTCAT
25858562 TTG
1 TTG
25858565 TTTCTTGCTT
Statistics
Matches: 107, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
117 18 0.17
118 4 0.04
119 80 0.75
120 5 0.05
ACGTcount: A:0.26, C:0.08, G:0.19, T:0.47
Consensus pattern (117 bp):
TTGCTATTATGTGAGATTACATATGAATAGTTGGATTTTGGAAATGAAATGGAATAAGATTGTTG
GTTAATTTCAATTTGCATACTTTTTTTACTAATATAGTTTGTCCTTACTCAT
Found at i:25878022 original size:14 final size:14
Alignment explanation
Indices: 25877985--25878025 Score: 55
Period size: 15 Copynumber: 2.8 Consensus size: 14
25877975 TGTTGTGAGA
*
25877985 TATAATAATATGAAT
1 TATAA-AATATAAAT
25878000 TATTAAAATATAAAT
1 TA-TAAAATATAAAT
25878015 TATAAAATATA
1 TATAAAATATA
25878026 TTTAAATTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 9 0.38
15 12 0.50
16 3 0.12
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (14 bp):
TATAAAATATAAAT
Found at i:25878175 original size:10 final size:10
Alignment explanation
Indices: 25878112--25878173 Score: 54
Period size: 10 Copynumber: 6.1 Consensus size: 10
25878102 TTAATTTATT
25878112 TAAATATAATA
1 TAAATA-AATA
25878123 TAAATAAATA
1 TAAATAAATA
*
25878133 TGAATAAAT-
1 TAAATAAATA
**
25878142 TAAATTCCATA
1 TAAA-TAAATA
*
25878153 TAAATATATA
1 TAAATAAATA
*
25878163 TGAATAAATA
1 TAAATAAATA
25878173 T
1 T
25878174 GATTATACGA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
9 3 0.07
10 28 0.68
11 10 0.24
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (10 bp):
TAAATAAATA
Found at i:25879574 original size:171 final size:172
Alignment explanation
Indices: 25879278--25879624 Score: 525
Period size: 171 Copynumber: 2.0 Consensus size: 172
25879268 ATATAAACAC
* *
25879278 TATACAAATTATAAAACATATTTAAATCATAAATACGAACACGACACGTTTTATTATACATTTTA
1 TATAAAAATTATAAAACATATTTAAATCATAAATACGAACACGACACGTTTTATTATACATGTTA
** * *
25879343 CACATGATACGATATGATGAATACGTATACAATTAATCCGTTGAAACACAATATAAATAAATATG
66 CACATGATACGATACAATGAATACGTATACAATTAATCCATTGAAACACAATACAAATAAATATG
*
25879408 AATAATACAGATATGCATGAATAGACATGACTAACATTGATA
131 AATAATACAGATATGCATGAATAGACATGACTAACATAGATA
* * * *
25879450 TATAAAAATTATAAAATATATTTAAATCATAAATACGAACATGACATG-TTTATTATACGTGTTA
1 TATAAAAATTATAAAACATATTTAAATCATAAATACGAACACGACACGTTTTATTATACATGTTA
* * * *
25879514 CACATGATACGATACAATTAATATGTGTACAATTAATCCATTGAAACATAATACAAATAAATATG
66 CACATGATACGATACAATGAATACGTATACAATTAATCCATTGAAACACAATACAAATAAATATG
* * *
25879579 CATAATACATATATGCATGAATAGACATGACTAATATAGATA
131 AATAATACAGATATGCATGAATAGACATGACTAACATAGATA
25879621 TATA
1 TATA
25879625 TGAATAAATA
Statistics
Matches: 157, Mismatches: 18, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
171 113 0.72
172 44 0.28
ACGTcount: A:0.47, C:0.12, G:0.10, T:0.31
Consensus pattern (172 bp):
TATAAAAATTATAAAACATATTTAAATCATAAATACGAACACGACACGTTTTATTATACATGTTA
CACATGATACGATACAATGAATACGTATACAATTAATCCATTGAAACACAATACAAATAAATATG
AATAATACAGATATGCATGAATAGACATGACTAACATAGATA
Found at i:25879923 original size:21 final size:22
Alignment explanation
Indices: 25879899--25879942 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
25879889 AATATATAGG
**
25879899 ATTAATATTTATATTT-ATATT
1 ATTAATATAAATATTTAATATT
25879920 ATTAATATAAATATTTAATATT
1 ATTAATATAAATATTTAATATT
25879942 A
1 A
25879943 AATTAAACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
ATTAATATAAATATTTAATATT
Found at i:25885953 original size:2 final size:2
Alignment explanation
Indices: 25885948--25885981 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
25885938 AATGTGTGTG
25885948 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25885982 ACAGAGGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25886081 original size:22 final size:22
Alignment explanation
Indices: 25886056--25886097 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
25886046 AAATTTGAAG
25886056 AAAAAAATTTTCTTAATACCCT
1 AAAAAAATTTTCTTAATACCCT
***
25886078 AAAATTTTTTTCTTAATACC
1 AAAAAAATTTTCTTAATACC
25886098 TCTTTATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAAAATTTTCTTAATACCCT
Found at i:25886364 original size:12 final size:12
Alignment explanation
Indices: 25886347--25886372 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25886337 ATTGTTATTC
25886347 TTCTTTTTTTTT
1 TTCTTTTTTTTT
25886359 TTCTTTTTTTTT
1 TTCTTTTTTTTT
25886371 TT
1 TT
25886373 GAAGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTCTTTTTTTTT
Found at i:25886368 original size:15 final size:15
Alignment explanation
Indices: 25886344--25886372 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
25886334 GAGATTGTTA
25886344 TTCTTCTTTTTTTTT
1 TTCTTCTTTTTTTTT
25886359 TTCTT-TTTTTTTTT
1 TTCTTCTTTTTTTTT
25886373 GAAGTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTCTTCTTTTTTTTT
Found at i:25886898 original size:12 final size:13
Alignment explanation
Indices: 25886865--25886898 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
25886855 TATTAATTTT
25886865 AAATTATTTATAA
1 AAATTATTTATAA
25886878 AAATATATTT-TAA
1 AAAT-TATTTATAA
25886891 AAATTATT
1 AAATTATT
25886899 GAATTATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.20
13 11 0.55
14 5 0.25
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
AAATTATTTATAA
Found at i:25887038 original size:218 final size:219
Alignment explanation
Indices: 25886690--25887565 Score: 1650
Period size: 218 Copynumber: 4.0 Consensus size: 219
25886680 GAATTGAAAA
25886690 AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
1 AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
* *
25886755 ATATAACAATTATTGATATGGATGTTTGAATAAATAGTTTCTTTTATTTACACGTAAAATAATTT
66 ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
*
25886820 TTAAAATTTTTTATTATGATAATACATAATATATTTATTAATTTTAAATTATTTAT-AAAAATAT
131 TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
25886884 ATTTTAAAAATTATTGAATTATCT
196 ATTTTAAAAATTATTGAATTATCT
*
25886908 AATAAAAAAATTGAATTGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
1 AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
25886973 ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
66 ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
25887038 TTAAAATTTTTTATTATGATAACACATAATATATTTA-TAATTTTAAATTATTTATAAAAAATAT
131 TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
25887102 ATTTTAAAAATTATTGAATTATCT
196 ATTTTAAAAATTATTGAATTATCT
*
25887126 AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTATC
1 AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
25887191 ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
66 ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
25887256 TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
131 TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
25887321 ATTTTAAAAATTATTGAATTATCT
196 ATTTTAAAAATTATTGAATTATCT
*
25887345 AAT-AAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTATC
1 AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
* *
25887409 ATATAACAATTATTTATATAGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
66 ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
25887474 TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
131 TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
*
25887539 ATTTTAAAAATTATTGAATTATAT
196 ATTTTAAAAATTATTGAATTATCT
25887563 AAT
1 AAT
25887566 TTTAAAATTT
Statistics
Matches: 647, Mismatches: 9, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
217 18 0.03
218 575 0.89
219 54 0.08
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.44
Consensus pattern (219 bp):
AATAAAAAAATTGAATCGAACTAAAATATATATACATATATTATATTATAACATAATTAGTTACC
ATATAACAATTATTGATATGGATGTTTGAATGAACAGTTTCTTTTATTTACACGTAAAATAATTT
TTAAAATTTTTTATTATGATAACACATAATATATTTATTAATTTTAAATTATTTATAAAAAATAT
ATTTTAAAAATTATTGAATTATCT
Found at i:25887864 original size:31 final size:31
Alignment explanation
Indices: 25887811--25887871 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
25887801 TTAACATGAG
*
25887811 TATTTAAATTTATCATAATTTTTAAAAATAT
1 TATTTAAATTTATAATAATTTTTAAAAATAT
* *
25887842 TATTTAATATTT-TAATATTTTTTATAAATA
1 TATTTAA-ATTTATAATAATTTTTAAAAATA
25887872 ATCCTTACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
31 22 0.85
32 4 0.15
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (31 bp):
TATTTAAATTTATAATAATTTTTAAAAATAT
Found at i:25888027 original size:233 final size:238
Alignment explanation
Indices: 25887745--25888174 Score: 705
Period size: 233 Copynumber: 1.8 Consensus size: 238
25887735 ATACATCATC
* *
25887745 TCATTTCAATTTAAAACTAATTTTAAAATAATTTATCTTTTTCAATTTATCTACAGTTAACATGA
1 TCATCTCAATTTAAAACTAATTTTAAAATAATTTATCTTTTTCAATTTATATACAGTTAACATGA
*
25887810 GTATTTAAATTTATCATAATTTTTAAAAATATTATTTAATA-TTTTAATA-TTTTTTATAAATAA
66 GTATTTAAATTTATCATAATTTTTAAAAATATTATTTAATACCTTTAATATTTTTTTATAAATAA
*
25887873 TCCTT-ACATTGTTC-TCAACTTTTAAATATA-TTT-CAAAAAAAATGTG-AAAAAATATATATA
131 TCCTTGA-A-TGATCTTCAACTTTTAAATATATTTTACAAAAAAAATGTGAAAAAAATATATATA
25887933 TATAAATACTAAAATAACTTCAAAAAAGTTTTTATTATACTAACA
194 TATAAATACTAAAATAACTTCAAAAAAGTTTTTATTATACTAACA
* * *
25887978 TCATCTCAATTTAAAATTAATTTTAAAGTAATTTAT-TTTTTCTAATTTATATGCAGTTAACATG
1 TCATCTCAATTTAAAACTAATTTTAAAATAATTTATCTTTTTC-AATTTATATACAGTTAACATG
25888042 AGTATTTAAATTTATCATAATTTTTAAAAATATTATTTAATACCTTTAATATTTTTTTATAAATA
65 AGTATTTAAATTTATCATAATTTTTAAAAATATTATTTAATACCTTTAATATTTTTTTATAAATA
*
25888107 ATCCTTGAATGATCTTCAGCTTTTAAATATATTTTACAAAAAAAATGTGAAAAAAATATATATAT
130 ATCCTTGAATGATCTTCAACTTTTAAATATATTTTACAAAAAAAATGTGAAAAAAATATATATAT
25888172 ATA
195 ATA
25888175 TATAATTACC
Statistics
Matches: 181, Mismatches: 8, Indels: 11
0.90 0.04 0.05
Matches are distributed among these distances:
232 6 0.03
233 94 0.52
234 11 0.06
235 35 0.19
236 4 0.02
237 13 0.07
238 18 0.10
ACGTcount: A:0.43, C:0.08, G:0.04, T:0.45
Consensus pattern (238 bp):
TCATCTCAATTTAAAACTAATTTTAAAATAATTTATCTTTTTCAATTTATATACAGTTAACATGA
GTATTTAAATTTATCATAATTTTTAAAAATATTATTTAATACCTTTAATATTTTTTTATAAATAA
TCCTTGAATGATCTTCAACTTTTAAATATATTTTACAAAAAAAATGTGAAAAAAATATATATATA
TAAATACTAAAATAACTTCAAAAAAGTTTTTATTATACTAACA
Found at i:25888443 original size:16 final size:16
Alignment explanation
Indices: 25888422--25888454 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
25888412 TTTTTAAATC
25888422 AGCTATAAAATTTTTT
1 AGCTATAAAATTTTTT
*
25888438 AGCTATAATATTTTTT
1 AGCTATAAAATTTTTT
25888454 A
1 A
25888455 AAAAACTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (16 bp):
AGCTATAAAATTTTTT
Found at i:25889225 original size:8 final size:8
Alignment explanation
Indices: 25889197--25889238 Score: 50
Period size: 8 Copynumber: 5.0 Consensus size: 8
25889187 AAGATTTTAT
25889197 ATTAAAATA
1 ATTAAAA-A
25889206 ATATATAAAA
1 AT-TA-AAAA
25889216 ATTAAAAA
1 ATTAAAAA
25889224 ATT-AAAA
1 ATTAAAAA
25889231 ATTAAAAA
1 ATTAAAAA
25889239 CTAATAAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
7 7 0.23
8 11 0.37
9 4 0.13
10 5 0.17
11 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (8 bp):
ATTAAAAA
Found at i:25895802 original size:2 final size:2
Alignment explanation
Indices: 25895795--25895822 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
25895785 AGGAAAAGAA
25895795 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25895823 GAAAAACAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25906732 original size:18 final size:19
Alignment explanation
Indices: 25906709--25906745 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
25906699 TTCCTTTTCT
*
25906709 AAAATTTTAAGG-GAAAAG
1 AAAATTTAAAGGTGAAAAG
25906727 AAAATTTAAAGGTGAAAAG
1 AAAATTTAAAGGTGAAAAG
25906746 CAAGTCTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.57, C:0.00, G:0.22, T:0.22
Consensus pattern (19 bp):
AAAATTTAAAGGTGAAAAG
Found at i:25922971 original size:7 final size:7
Alignment explanation
Indices: 25922959--25922983 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25922949 CAAAGAAAAA
25922959 AAAAACG
1 AAAAACG
25922966 AAAAACG
1 AAAAACG
25922973 AAAAACG
1 AAAAACG
25922980 AAAA
1 AAAA
25922984 GAAAGAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.12, G:0.12, T:0.00
Consensus pattern (7 bp):
AAAAACG
Found at i:25926308 original size:21 final size:21
Alignment explanation
Indices: 25926284--25926327 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
25926274 CTCGTCATGA
* *
25926284 TCATCGCCATCGTCGTCGTCT
1 TCATAGCCATCGTCATCGTCT
* *
25926305 TCATAGTCATCGTCATCTTCT
1 TCATAGCCATCGTCATCGTCT
25926326 TC
1 TC
25926328 TTCTTCTTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.39
Consensus pattern (21 bp):
TCATAGCCATCGTCATCGTCT
Found at i:25926328 original size:3 final size:3
Alignment explanation
Indices: 25926320--25926345 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25926310 GTCATCGTCA
25926320 TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TC
25926346 GGCGTCAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TCT
Found at i:25927358 original size:21 final size:23
Alignment explanation
Indices: 25927334--25927376 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
25927324 TGATTAAATA
25927334 TTATTAAAAT-ATTTT-ATATTT
1 TTATTAAAATAATTTTAATATTT
*
25927355 TTATTAATATAATTTTAATATT
1 TTATTAAAATAATTTTAATATT
25927377 CTTTTTTATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 5 0.26
23 5 0.26
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
TTATTAAAATAATTTTAATATTT
Found at i:25928874 original size:24 final size:24
Alignment explanation
Indices: 25928843--25928898 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
25928833 AATTACAAAG
* *
25928843 ATTT-TTTTGTTATTTGATTGGAC
1 ATTTATTTTATTATTTGATTGAAC
25928866 ATTTATTTTATTATTTGATTGAAC
1 ATTTATTTTATTATTTGATTGAAC
25928890 ATTTATTTT
1 ATTTATTTT
25928899 TAGCATGTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 4 0.13
24 26 0.87
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.62
Consensus pattern (24 bp):
ATTTATTTTATTATTTGATTGAAC
Found at i:25935941 original size:29 final size:28
Alignment explanation
Indices: 25935888--25935950 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
25935878 AATATATATA
* * *
25935888 TATTATTGACTACTAAATTATTTTTGATT
1 TATTATTGACTACTAAA-TAGTTTTCAAT
25935917 TATTATTGACTTACTAAA-AGGTTTTCAAT
1 TATTATTGAC-TACTAAATA-GTTTTCAAT
25935946 TATTA
1 TATTA
25935951 ACTATAAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
28 1 0.03
29 21 0.72
30 7 0.24
ACGTcount: A:0.33, C:0.08, G:0.08, T:0.51
Consensus pattern (28 bp):
TATTATTGACTACTAAATAGTTTTCAAT
Found at i:25935977 original size:22 final size:22
Alignment explanation
Indices: 25935951--25936028 Score: 77
Period size: 22 Copynumber: 3.6 Consensus size: 22
25935941 TCAATTATTA
* * *
25935951 ACTATAAAATTATCATTCATTT
1 ACTATTAAATTATCATTAAATT
*
25935973 ACTATTAAATTATTATTAAATT
1 ACTATTAAATTATCATTAAATT
* *
25935995 ATTATTAAATTATCAAT-AATT
1 ACTATTAAATTATCATTAAATT
* *
25936016 ACCATTAAGTTAT
1 ACTATTAAATTAT
25936029 TTTGATTACA
Statistics
Matches: 46, Mismatches: 10, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
21 14 0.30
22 32 0.70
ACGTcount: A:0.44, C:0.09, G:0.01, T:0.46
Consensus pattern (22 bp):
ACTATTAAATTATCATTAAATT
Found at i:25935991 original size:11 final size:11
Alignment explanation
Indices: 25935975--25936007 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
25935965 ATTCATTTAC
25935975 TATTAAATTAT
1 TATTAAATTAT
25935986 TATTAAATTAT
1 TATTAAATTAT
25935997 TATTAAATTAT
1 TATTAAATTAT
25936008 CAATAATTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTAAATTAT
Found at i:25936449 original size:12 final size:13
Alignment explanation
Indices: 25936434--25936462 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25936424 TTAAATTAAA
25936434 ATTTA-TAAAAAT
1 ATTTACTAAAAAT
25936446 ATTTACTAAAAAT
1 ATTTACTAAAAAT
25936459 ATTT
1 ATTT
25936463 TAACGAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTACTAAAAAT
Found at i:25936585 original size:38 final size:38
Alignment explanation
Indices: 25936543--25936620 Score: 95
Period size: 38 Copynumber: 2.1 Consensus size: 38
25936533 AATTTTAGTT
*
25936543 AATTTAAA-TTAAACTTAAATAAATTAATAAAAATTATA
1 AATTTAAAGATAAA-TTAAATAAATTAATAAAAATTATA
* * * *
25936581 AATTTAAAGATAAATTTATTAATTTAATAAAATTTATA
1 AATTTAAAGATAAATTAAATAAATTAATAAAAATTATA
25936619 AA
1 AA
25936621 AATATTTAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (38 bp):
AATTTAAAGATAAATTAAATAAATTAATAAAAATTATA
Found at i:25953446 original size:6 final size:6
Alignment explanation
Indices: 25953435--25953459 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
25953425 ATCTTCCTCG
25953435 TCGTCT TCGTCT TCGTCT TCGTCT T
1 TCGTCT TCGTCT TCGTCT TCGTCT T
25953460 GGCTTTCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.32, G:0.16, T:0.52
Consensus pattern (6 bp):
TCGTCT
Found at i:25957324 original size:81 final size:81
Alignment explanation
Indices: 25957224--25957382 Score: 264
Period size: 81 Copynumber: 2.0 Consensus size: 81
25957214 TCATGTATAG
* *
25957224 ATATATATATATATATATGTTGACTAGCTAACAAGTTAATTAAATTGATGAATTCGTCATGATGC
1 ATATATATATATATATATGTTGACTAGCTAACAAGTTAATTAAACTGATGAATTCATCATGATGC
*
25957289 AGGCATGCATACAGAT
66 AGGCATACATACAGAT
* *
25957305 ATATATATATATATATATGTTGACTAGCTAATAGGTTAATTAAACTGATGAATTCATCATGATGC
1 ATATATATATATATATATGTTGACTAGCTAACAAGTTAATTAAACTGATGAATTCATCATGATGC
*
25957370 ATGCATACATACA
66 AGGCATACATACA
25957383 TATTTTAACT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 72 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.35
Consensus pattern (81 bp):
ATATATATATATATATATGTTGACTAGCTAACAAGTTAATTAAACTGATGAATTCATCATGATGC
AGGCATACATACAGAT
Found at i:25958447 original size:2 final size:2
Alignment explanation
Indices: 25958440--25958465 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25958430 CAAGCGATTC
25958440 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
25958466 GAATGTTAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:25960072 original size:12 final size:13
Alignment explanation
Indices: 25960016--25960070 Score: 51
Period size: 13 Copynumber: 4.1 Consensus size: 13
25960006 GCGAACTGTC
25960016 TTCATCTTTTTCTT
1 TTCAT-TTTTTCTT
25960030 CTTCATGTTCTTT-TT
1 -TTCAT-TT-TTTCTT
*
25960045 TT-GTTTTTTCTT
1 TTCATTTTTTCTT
25960057 TTCATTTTTTCTT
1 TTCATTTTTTCTT
25960070 T
1 T
25960071 CAAATTCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
11 3 0.09
12 6 0.18
13 11 0.32
14 2 0.06
15 9 0.26
16 3 0.09
ACGTcount: A:0.05, C:0.16, G:0.04, T:0.75
Consensus pattern (13 bp):
TTCATTTTTTCTT
Found at i:25962038 original size:2 final size:2
Alignment explanation
Indices: 25962031--25962055 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25962021 TATCACTACC
25962031 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
25962056 CCATTGAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25962414 original size:2 final size:2
Alignment explanation
Indices: 25962407--25962436 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
25962397 AAATTGCCGC
25962407 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
25962437 CAGTCCCATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:25963932 original size:16 final size:16
Alignment explanation
Indices: 25963913--25963951 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
25963903 TACATTTAAT
*
25963913 TATATATATTTTTATA
1 TATATATAATTTTATA
*
25963929 TATATTTAATTTTATA
1 TATATATAATTTTATA
*
25963945 TTTATAT
1 TATATAT
25963952 TTAAAATAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATATATAATTTTATA
Found at i:25963944 original size:12 final size:13
Alignment explanation
Indices: 25963906--25963954 Score: 50
Period size: 12 Copynumber: 3.8 Consensus size: 13
25963896 TAAATTTTAC
25963906 ATTTAATTATATAT
1 ATTTAATT-TATAT
25963920 ATTT--TTATATAT
1 ATTTAATT-TATAT
25963932 ATTTAATTT-TAT
1 ATTTAATTTATAT
25963944 ATTTATATTTA
1 ATTTA-ATTTA
25963955 AAATAATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
12 20 0.65
13 5 0.16
14 6 0.19
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
ATTTAATTTATAT
Found at i:25964293 original size:6 final size:6
Alignment explanation
Indices: 25964279--25964310 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
25964269 GATAGGGGAG
*
25964279 AGGCTA AGGCAA AGGCAA AGGCAA AGGCAA AG
1 AGGCAA AGGCAA AGGCAA AGGCAA AGGCAA AG
25964311 TTGCAAACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.47, C:0.16, G:0.34, T:0.03
Consensus pattern (6 bp):
AGGCAA
Found at i:25969125 original size:2 final size:2
Alignment explanation
Indices: 25969118--25969144 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
25969108 CCCAACAGAT
25969118 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
25969145 GTTCTTCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25991000 original size:45 final size:45
Alignment explanation
Indices: 25990949--25991039 Score: 155
Period size: 45 Copynumber: 2.0 Consensus size: 45
25990939 TCTTTACTAA
* *
25990949 AGATAAGAGATATCAAACTGCGGATTAGATATCTGTTTAGATTGG
1 AGATAAGAGATATCAAACAGAGGATTAGATATCTGTTTAGATTGG
*
25990994 AGATAAGAGATGTCAAACAGAGGATTAGATATCTGTTTAGATTGG
1 AGATAAGAGATATCAAACAGAGGATTAGATATCTGTTTAGATTGG
25991039 A
1 A
25991040 ACAAAATACA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.30
Consensus pattern (45 bp):
AGATAAGAGATATCAAACAGAGGATTAGATATCTGTTTAGATTGG
Found at i:25998471 original size:4 final size:4
Alignment explanation
Indices: 25998462--25998519 Score: 91
Period size: 4 Copynumber: 14.5 Consensus size: 4
25998452 TTAAAATGTG
*
25998462 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAT ATGAT AAAT AAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT
25998510 AAAT AAAT AA
1 AAAT AAAT AA
25998520 TATGATAAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
3 3 0.06
4 44 0.88
5 3 0.06
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:25998520 original size:24 final size:24
Alignment explanation
Indices: 25998462--25998529 Score: 111
Period size: 24 Copynumber: 2.8 Consensus size: 24
25998452 TTAAAATGTG
*
25998462 AAATAAATAA-ATAAATAAATAAAT
1 AAATAAATAATAT-GATAAATAAAT
25998486 AAATAAATAATATGATAAATAAAT
1 AAATAAATAATATGATAAATAAAT
25998510 AAATAAATAATATGATAAAT
1 AAATAAATAATATGATAAAT
25998530 TGACTAACAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
24 40 0.95
25 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (24 bp):
AAATAAATAATATGATAAATAAAT
Found at i:25998527 original size:12 final size:12
Alignment explanation
Indices: 25998488--25998529 Score: 59
Period size: 12 Copynumber: 3.5 Consensus size: 12
25998478 AAATAAATAA
25998488 ATAAATAATATG
1 ATAAATAATATG
*
25998500 ATAAATAA-ATAA
1 ATAAATAATAT-G
25998512 ATAAATAATATG
1 ATAAATAATATG
25998524 ATAAAT
1 ATAAAT
25998530 TGACTAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (12 bp):
ATAAATAATATG
Found at i:26007446 original size:9 final size:9
Alignment explanation
Indices: 26007430--26007466 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
26007420 TCAACAACAT
26007430 TTGG-AGCA
1 TTGGTAGCA
26007438 TTGGTAGCA
1 TTGGTAGCA
26007447 TTGGTAGCA
1 TTGGTAGCA
26007456 TTGGTAGCA
1 TTGGTAGCA
26007465 TT
1 TT
26007467 AGTACCATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 4 0.14
9 24 0.86
ACGTcount: A:0.22, C:0.11, G:0.32, T:0.35
Consensus pattern (9 bp):
TTGGTAGCA
Found at i:26012355 original size:2 final size:2
Alignment explanation
Indices: 26012307--26012341 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26012297 AAATTCCTAC
26012307 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26012342 CCACATACAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26012569 original size:23 final size:24
Alignment explanation
Indices: 26012543--26012599 Score: 68
Period size: 23 Copynumber: 2.5 Consensus size: 24
26012533 AACATTTTTT
*
26012543 ATAAATATATTTTG-TTTTTTTAA
1 ATAAATATATTTTGCTTTTCTTAA
*
26012566 AT-AATATACTTTGCTTTTCTTAA
1 ATAAATATATTTTGCTTTTCTTAA
26012589 A-AAATA-ATTTT
1 ATAAATATATTTT
26012600 ATGTACGTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
22 14 0.48
23 15 0.52
ACGTcount: A:0.37, C:0.05, G:0.04, T:0.54
Consensus pattern (24 bp):
ATAAATATATTTTGCTTTTCTTAA
Found at i:26012571 original size:22 final size:22
Alignment explanation
Indices: 26012537--26012599 Score: 67
Period size: 22 Copynumber: 2.9 Consensus size: 22
26012527 AATGTAAACA
*
26012537 TTTTTTATAAATATATTTTG-T
1 TTTTTTAAAAATATATTTTGCT
*
26012558 TTTTTTAAATAATATACTTTGCT
1 TTTTTTAAA-AATATATTTTGCT
*
26012581 TTTCTTAAAAA-ATAATTTT
1 TTTTTTAAAAATAT-ATTTT
26012600 ATGTACGTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 10 0.29
22 16 0.46
23 9 0.26
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (22 bp):
TTTTTTAAAAATATATTTTGCT
Found at i:26013275 original size:91 final size:95
Alignment explanation
Indices: 26013170--26013358 Score: 287
Period size: 97 Copynumber: 2.0 Consensus size: 95
26013160 TGAACATGAG
26013170 ATTGATTTTAAAACTTCTAAA-GT-TTT-AATTTTTTAAAAT-AAAAAATTATTATCTTTTGTTT
1 ATTGATTTTAAAACTTCTAAATGTATTTAAATTTTTTAAAATCAAAAAATTATTATCTTTTGTTT
*
26013231 TCGTGCATGACACGCTTAAAAACTTATATT
66 TCGTGCATAACACGCTTAAAAACTTATATT
* * *
26013261 ATTGATTTTAAAACTTTTAAATTTAAATTTAAATTTTTTAAAATCAAAATATTATTATCTTTTGT
1 ATTGATTTTAAAACTTCTAAATGT--ATTTAAATTTTTTAAAATCAAAAAATTATTATCTTTTGT
*
26013326 TTTTGTGCATAACACGCTTAAAAACTTATATT
64 TTTCGTGCATAACACGCTTAAAAACTTATATT
26013358 A
1 A
26013359 CCATTTAAAA
Statistics
Matches: 87, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
91 20 0.23
92 1 0.01
95 3 0.03
96 13 0.15
97 50 0.57
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (95 bp):
ATTGATTTTAAAACTTCTAAATGTATTTAAATTTTTTAAAATCAAAAAATTATTATCTTTTGTTT
TCGTGCATAACACGCTTAAAAACTTATATT
Found at i:26013420 original size:23 final size:22
Alignment explanation
Indices: 26013351--26013415 Score: 69
Period size: 27 Copynumber: 2.8 Consensus size: 22
26013341 GCTTAAAAAC
26013351 TTATATTACCATTTAAAAAAAATTAGT
1 TTATATTACCATTT---AAAAA-T-GT
26013378 TTATATTACCATTTAAAAATGT
1 TTATATTACCATTTAAAAATGT
*
26013400 TT-TATTACCTTTTAAA
1 TTATATTACCATTTAAA
26013416 CAAATTACAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
21 13 0.35
22 4 0.11
23 1 0.03
24 5 0.14
27 14 0.38
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.46
Consensus pattern (22 bp):
TTATATTACCATTTAAAAATGT
Found at i:26023586 original size:170 final size:170
Alignment explanation
Indices: 26023304--26023647 Score: 544
Period size: 170 Copynumber: 2.0 Consensus size: 170
26023294 ATACCTCTTA
* * *
26023304 AGGTAGATAGATCTACTTTTACTTTGTTTTTCCCCTTATCAATAAGTCATCTTTTCTTATTCTTT
1 AGGTAGATAGATATACTTTTACTTTATTTTTCCCCTTATCAATAAGTCATCTTTTCTTATTCTTC
26023369 AACTACTTCATTAAATCTACAACTCCAGTTGATATTGCATTTACTTTTCTTGGTAAGTTGATAAC
66 AACTACTTCATTAAATCTACAACTCCAGTTGATATTGCATTTACTTTTCTTGGTAAGTTGATAAC
* * *
26023434 TGGCTCAACCTTTTTTGTCTCTCGAGATTCTACCTTCACC
131 TGGCTCAACCCTTTTTGTCTCTCAAGATTCTACCATCACC
* *
26023474 AGGTAGATAGATATACTTTTACTTTATTTTTTCCTTTATCAATAAGTCATCTTTTCTTATTCTTC
1 AGGTAGATAGATATACTTTTACTTTATTTTTCCCCTTATCAATAAGTCATCTTTTCTTATTCTTC
* * * * ** *
26023539 AACTATTTCATTAAGTTTGCAACTTTAGTTGATATTGTATTTACTTTTCTTGGTAAGTTGATAAC
66 AACTACTTCATTAAATCTACAACTCCAGTTGATATTGCATTTACTTTTCTTGGTAAGTTGATAAC
*
26023604 TGGCTCAACCCTTTTTGTCTCTCAAGATTCTACCATCGCC
131 TGGCTCAACCCTTTTTGTCTCTCAAGATTCTACCATCACC
26023644 AGGT
1 AGGT
26023648 CCACTTGAGC
Statistics
Matches: 158, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
170 158 1.00
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.45
Consensus pattern (170 bp):
AGGTAGATAGATATACTTTTACTTTATTTTTCCCCTTATCAATAAGTCATCTTTTCTTATTCTTC
AACTACTTCATTAAATCTACAACTCCAGTTGATATTGCATTTACTTTTCTTGGTAAGTTGATAAC
TGGCTCAACCCTTTTTGTCTCTCAAGATTCTACCATCACC
Found at i:26025846 original size:18 final size:18
Alignment explanation
Indices: 26025825--26025859 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26025815 ATAATTTATT
26025825 TAATTTTATATTTATATA
1 TAATTTTATATTTATATA
26025843 TAATTTTATATTTATAT
1 TAATTTTATATTTATAT
26025860 TAAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TAATTTTATATTTATATA
Found at i:26028575 original size:32 final size:32
Alignment explanation
Indices: 26028553--26028616 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
26028543 ATATATCAGG
*
26028553 AGATATAGTATTTGAGGATTCTAATGTAGAGT
1 AGATATAGTATTTGAGGATTCTAATATAGAGT
* * *
26028585 AGATATAGTATTTGAGGAATCTACTGTAGAGT
1 AGATATAGTATTTGAGGATTCTAATATAGAGT
26028617 TTGAGATTGC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (32 bp):
AGATATAGTATTTGAGGATTCTAATATAGAGT
Found at i:26033836 original size:7 final size:7
Alignment explanation
Indices: 26033818--26033856 Score: 60
Period size: 7 Copynumber: 5.3 Consensus size: 7
26033808 GATTTATTAC
26033818 TAAATAAA
1 TAAAT-AA
26033826 TAAATAA
1 TAAATAA
26033833 TAAATAA
1 TAAATAA
26033840 TAAATAA
1 TAAATAA
26033847 TAAATGAA
1 TAAAT-AA
26033855 TA
1 TA
26033857 CAATTACAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
7 21 0.70
8 9 0.30
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (7 bp):
TAAATAA
Found at i:26037156 original size:39 final size:39
Alignment explanation
Indices: 26037113--26037191 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
26037103 TGACAGAAAT
*
26037113 TTTTATGGAGAAGATGCGTAAAAAGCATAGCTAATTTCA
1 TTTTATGGAGAAGATGCATAAAAAGCATAGCTAATTTCA
* *
26037152 TTTTATGGAGAAGATGCATGAAAATCATAGCTAATTTCA
1 TTTTATGGAGAAGATGCATAAAAAGCATAGCTAATTTCA
26037191 T
1 T
26037192 CTTCTTTTGG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (39 bp):
TTTTATGGAGAAGATGCATAAAAAGCATAGCTAATTTCA
Found at i:26039706 original size:12 final size:12
Alignment explanation
Indices: 26039689--26039713 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26039679 AAAGTAAAAT
26039689 GAGTTGGCTAAG
1 GAGTTGGCTAAG
26039701 GAGTTGGCTAAG
1 GAGTTGGCTAAG
26039713 G
1 G
26039714 TAAGCTTAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.44, T:0.24
Consensus pattern (12 bp):
GAGTTGGCTAAG
Found at i:26048087 original size:2 final size:2
Alignment explanation
Indices: 26048080--26048110 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26048070 AATAAATAAA
*
26048080 AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26048111 AATCCTGAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:26049721 original size:27 final size:26
Alignment explanation
Indices: 26049691--26049747 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
26049681 ACATAAAATA
26049691 TAGATGGAGATACA-ATATCAACAAACC
1 TAGAT-GAGATACATA-ATCAACAAACC
* *
26049718 TAGATGAGATTCATAATCAACAAATC
1 TAGATGAGATACATAATCAACAAACC
26049744 TAGA
1 TAGA
26049748 ACGCCATTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.23
Consensus pattern (26 bp):
TAGATGAGATACATAATCAACAAACC
Found at i:26050741 original size:20 final size:19
Alignment explanation
Indices: 26050716--26050757 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
26050706 ATTTAAAATT
*
26050716 AAAATAATAAAATATATATA
1 AAAATAAAAAAATATA-ATA
*
26050736 AAAATAAAAAAATTTAATA
1 AAAATAAAAAAATATAATA
26050755 AAA
1 AAA
26050758 TCGTAAACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (19 bp):
AAAATAAAAAAATATAATA
Found at i:26051471 original size:2 final size:2
Alignment explanation
Indices: 26051464--26051498 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
26051454 CACAGCACAA
26051464 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26051499 ATGTACCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:26055910 original size:29 final size:29
Alignment explanation
Indices: 26055878--26055941 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
26055868 GAACAGACAC
** * *
26055878 GACTAACATTAATATATA-TAAATAAATGT
1 GACTAACACGAATATATACAAAAAAAAT-T
26055907 GACTAACACGAATATATACAAAAAAAATT
1 GACTAACACGAATATATACAAAAAAAATT
26055936 GACTAA
1 GACTAA
26055942 AATAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 23 0.77
30 7 0.23
ACGTcount: A:0.55, C:0.11, G:0.08, T:0.27
Consensus pattern (29 bp):
GACTAACACGAATATATACAAAAAAAATT
Found at i:26056199 original size:11 final size:11
Alignment explanation
Indices: 26056185--26056216 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
26056175 CTAGTATTAA
26056185 TATTTATATTG
1 TATTTATATTG
26056196 TATTTATATTG
1 TATTTATATTG
*
26056207 TGTTTATATT
1 TATTTATATT
26056217 ATTAATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.09, T:0.66
Consensus pattern (11 bp):
TATTTATATTG
Found at i:26059290 original size:14 final size:14
Alignment explanation
Indices: 26059271--26059758 Score: 164
Period size: 14 Copynumber: 35.4 Consensus size: 14
26059261 ACACACATAA
26059271 ACATATATATGTAT
1 ACATATATATGTAT
* *
26059285 ACATATATATACATAA
1 ACATATATAT--GTAT
26059301 ACATATATATGTAT
1 ACATATATATGTAT
*
26059315 ACATATATATTTAT
1 ACATATATATGTAT
* *
26059329 AAATATATACATATAT
1 ACATATAT--ATGTAT
**
26059345 GTATATATATGTAT
1 ACATATATATGTAT
*
26059359 ACATATACA--TAT
1 ACATATATATGTAT
* * *
26059371 --ATGTATTTATAT
1 ACATATATATGTAT
*
26059383 GCATATATATGTAT
1 ACATATATATGTAT
** *
26059397 GTACATA-ATG--T
1 ACATATATATGTAT
26059408 ACATATATATGTACAT
1 ACATATATATGT--AT
*
26059424 ACATATATGTAGATAT
1 ACATATATAT-G-TAT
** *
26059440 ATGTATACATGTAT
1 ACATATATATGTAT
* *
26059454 ATATATGTATGT-T
1 ACATATATATGTAT
* *
26059467 ATATGTATATG--T
1 ACATATATATGTAT
*
26059479 A-ATAGATA--TAT
1 ACATATATATGTAT
*
26059490 GCATATATATGTAT
1 ACATATATATGTAT
*
26059504 --ATGTATATGTAT
1 ACATATATATGTAT
*
26059516 --ATGTATATGTAT
1 ACATATATATGTAT
*
26059528 --ATGTATATGTAT
1 ACATATATATGTAT
**
26059540 ATGTATATA-GATAT
1 ACATATATATG-TAT
*
26059554 GCATATATATGTAT
1 ACATATATATGTAT
* *
26059568 ATGTAGATATATGTAT
1 A--CATATATATGTAT
*
26059584 ACATACATATATATAT
1 ACAT--ATATATGTAT
* * *
26059600 ATAGATATATGCAT
1 ACATATATATGTAT
26059614 --ATATATATGTAT
1 ACATATATATGTAT
* * *
26059626 ATAGATATATGCAT
1 ACATATATATGTAT
26059640 --ATATATATGTAT
1 ACATATATATGTAT
* * *
26059652 ATAGATATATGCAT
1 ACATATATATGTAT
* *
26059666 ATATATGTATGTACAT
1 ACATATATATGT--AT
* *
26059682 ATATATATGTATGCAT
1 ACATATA--TATGTAT
26059698 ACATATATATGTATGT
1 ACATATATATGTA--T
* *
26059714 ACATATATGTATAT
1 ACATATATATGTAT
* *
26059728 ACATGTATA--CAT
1 ACATATATATGTAT
26059740 ACATATATATGTAT
1 ACATATATATGTAT
26059754 ACATA
1 ACATA
26059759 AACACATATA
Statistics
Matches: 358, Mismatches: 76, Indels: 80
0.70 0.15 0.16
Matches are distributed among these distances:
10 4 0.01
11 11 0.03
12 82 0.23
13 14 0.04
14 147 0.41
15 2 0.01
16 92 0.26
17 1 0.00
18 5 0.01
ACGTcount: A:0.41, C:0.06, G:0.10, T:0.42
Consensus pattern (14 bp):
ACATATATATGTAT
Found at i:26059292 original size:12 final size:12
Alignment explanation
Indices: 26059275--26059994 Score: 122
Period size: 12 Copynumber: 60.6 Consensus size: 12
26059265 ACATAAACAT
26059275 ATATATGTATAC
1 ATATATGTATAC
26059287 ATATA--TATAC
1 ATATATGTATAC
**
26059297 ATA-A-ACATA-
1 ATATATGTATAC
26059306 -TATATGTATAC
1 ATATATGTATAC
**
26059317 ATATA--TATTT
1 ATATATGTATAC
* *
26059327 ATAAATATATAC
1 ATATATGTATAC
26059339 ATATATGTAT--
1 ATATATGTATAC
26059349 ATATATGTATAC
1 ATATATGTATAC
** *
26059361 ATATACATATAT
1 ATATATGTATAC
* * * *
26059373 GTATTTATATGCAT
1 ATATATGTAT--AC
26059387 ATATATGTATGTAC
1 ATATATGTA--TAC
* *
26059401 ATA-ATGTACAT
1 ATATATGTATAC
26059412 ATATATGTACATAC
1 ATATATGT--ATAC
*
26059426 ATATATG--TAG
1 ATATATGTATAC
26059436 ATATATGTATAC
1 ATATATGTATAC
* *
26059448 ATGTA--TATAT
1 ATATATGTATAC
* *
26059458 ATGTATGTTATAT
1 ATATATG-TATAC
* *
26059471 GTATATGTAATAG
1 ATATATGT-ATAC
*
26059484 ATATATGCATATAT
1 ATATATG--TATAC
*
26059498 ATGTATATGTATAT
1 A--TATATGTATAC
* *
26059512 GTATATGTATAT
1 ATATATGTATAC
* *
26059524 GTATATGTATAT
1 ATATATGTATAC
* *
26059536 GTATATGTATAT
1 ATATATGTATAC
* *
26059548 AGATATGCATATAT
1 ATATATG--TATAC
* * * *
26059562 ATGTATATGTAG
1 ATATATGTATAC
26059574 ATATATGTATAC
1 ATATATGTATAC
*
26059586 ATACA--TAT--
1 ATATATGTATAC
*
26059594 ATATA--TATAG
1 ATATATGTATAC
* *
26059604 ATATATGCATAT
1 ATATATGTATAC
*
26059616 ATATATGTATATAG
1 ATATATG--TATAC
* *
26059630 ATATATGCATAT
1 ATATATGTATAC
*
26059642 ATATATGTATATAG
1 ATATATG--TATAC
*
26059656 ATATATGCAT--
1 ATATATGTATAC
26059666 ATATATGTATGTAC
1 ATATATGTA--TAC
26059680 ATATA--TAT--
1 ATATATGTATAC
* *
26059688 ATGTATGCATAC
1 ATATATGTATAC
26059700 ATATATATGTATGTAC
1 --ATATATGTA--TAC
26059716 ATATATGTATATAC
1 ATATATG--TATAC
* **
26059730 ATGTATACATAC
1 ATATATGTATAC
26059742 ATATATATGTATAC
1 --ATATATGTATAC
*
26059756 ATA-A---ACAC
1 ATATATGTATAC
26059764 ATATATGTGTATAC
1 ATATA--TGTATAC
* *
26059778 ATATGTATATAC
1 ATATATGTATAC
*
26059790 ATAGA--TATAC
1 ATATATGTATAC
*
26059800 --ATATGTATAT
1 ATATATGTATAC
* *
26059810 ATATTTGTATAT
1 ATATATGTATAC
* *
26059822 ATATTTGTATAT
1 ATATATGTATAC
* * **
26059834 ATACATATATGT
1 ATATATGTATAC
*
26059846 ATATGCATGTACAC
1 ATAT--ATGTATAC
26059860 ATATATG--TAC
1 ATATATGTATAC
*
26059870 ATACA--TATAC
1 ATATATGTATAC
26059880 ATATATGTATAC
1 ATATATGTATAC
*
26059892 --ATATGTACAC
1 ATATATGTATAC
**
26059902 ATATATACATAC
1 ATATATGTATAC
**
26059914 ATATATACATAC
1 ATATATGTATAC
* *
26059926 ATATACATATGTTTAT
1 --AT--ATATGTATAC
* *
26059942 GTATATGTATAT
1 ATATATGTATAC
**
26059954 ATATATGTATGT
1 ATATATGTATAC
*
26059966 ATATATGTGTAC
1 ATATATGTATAC
26059978 --ATATGTATAC
1 ATATATGTATAC
26059988 ATATATG
1 ATATATG
26059995 CATATATACA
Statistics
Matches: 528, Mismatches: 104, Indels: 152
0.67 0.13 0.19
Matches are distributed among these distances:
8 21 0.04
9 3 0.01
10 108 0.20
11 5 0.01
12 235 0.45
13 24 0.05
14 113 0.21
15 1 0.00
16 18 0.03
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (12 bp):
ATATATGTATAC
Found at i:26059295 original size:10 final size:10
Alignment explanation
Indices: 26059277--26059365 Score: 61
Period size: 10 Copynumber: 8.5 Consensus size: 10
26059267 ATAAACATAT
*
26059277 ATATGTATAC
1 ATATATATAC
26059287 ATATATATAC
1 ATATATATAC
* * *
26059297 ATAAACATAT
1 ATATATATAC
*
26059307 ATATGTATAC
1 ATATATATAC
*
26059317 ATATATATTTAT
1 ATATATA--TAC
*
26059329 AAATATATAC
1 ATATATATAC
*
26059339 ATATATGTATAT
1 ATATA--TATAC
*
26059351 ATATGTATAC
1 ATATATATAC
26059361 ATATA
1 ATATA
26059366 CATATATGTA
Statistics
Matches: 58, Mismatches: 17, Indels: 8
0.70 0.20 0.10
Matches are distributed among these distances:
10 42 0.72
12 16 0.28
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (10 bp):
ATATATATAC
Found at i:26059299 original size:30 final size:30
Alignment explanation
Indices: 26059265--26059372 Score: 126
Period size: 30 Copynumber: 3.5 Consensus size: 30
26059255 GCGCACACAC
26059265 ACATAAACATATATATGTATACATATATAT
1 ACATAAACATATATATGTATACATATATAT
26059295 ACATAAACATATATATGTATACATATATAT
1 ACATAAACATATATATGTATACATATATAT
** * * *
26059325 TTATAAATATATACATATATGTATATATATGTAT
1 ACAT-AA-ACAT--ATATATGTATACATATATAT
*
26059359 ACATATACATATAT
1 ACATAAACATATAT
26059373 GTATTTATAT
Statistics
Matches: 65, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
30 36 0.55
31 2 0.03
32 6 0.09
33 1 0.02
34 20 0.31
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (30 bp):
ACATAAACATATATATGTATACATATATAT
Found at i:26059381 original size:10 final size:10
Alignment explanation
Indices: 26059317--26060002 Score: 245
Period size: 10 Copynumber: 66.7 Consensus size: 10
26059307 ATATGTATAC
*
26059317 ATATATATTT
1 ATATATATGT
* *
26059327 ATAAATATAT
1 ATATATATGT
*
26059337 ACATATATGT
1 ATATATATGT
26059347 ATATATATGT
1 ATATATATGT
*
26059357 ATACATA--T
1 ATATATATGT
*
26059365 ACATATATGT
1 ATATATATGT
* *
26059375 ATTTATATGC
1 ATATATATGT
26059385 ATATATATGT
1 ATATATATGT
*
26059395 ATGTACATAATGT
1 A--TATAT-ATGT
26059408 ACATATATATGT
1 --ATATATATGT
26059420 ACATACATATATGT
1 --AT--ATATATGT
*
26059434 AGATATATG-
1 ATATATATGT
*
26059443 -TATACATGT
1 ATATATATGT
26059452 ATATATATGT
1 ATATATATGT
*
26059462 ATGTTATATGT
1 AT-ATATATGT
* *
26059473 ATATGTA-AT
1 ATATATATGT
* *
26059482 AGATATATGC
1 ATATATATGT
26059492 ATATATATGT
1 ATATATATGT
26059502 ATATGTATATGT
1 ATA--TATATGT
26059514 ATATGTATATGT
1 ATA--TATATGT
26059526 ATATGTATATGT
1 ATA--TATATGT
*
26059538 ATATGTA--T
1 ATATATATGT
* *
26059546 ATAGATATGC
1 ATATATATGT
26059556 ATATATATG-
1 ATATATATGT
26059565 ---TATATGT
1 ATATATATGT
*
26059572 AGATATATGT
1 ATATATATGT
* **
26059582 ATACATACAT
1 ATATATATGT
*
26059592 ATATATATAT
1 ATATATATGT
*
26059602 AGATATATGCAT
1 ATATATATG--T
26059614 ATATATATGT
1 ATATATATGT
* *
26059624 ATATAGATAT
1 ATATATATGT
** *
26059634 ATGCATATAT
1 ATATATATGT
* *
26059644 ATATGTATAT
1 ATATATATGT
* *
26059654 AGATATATGC
1 ATATATATGT
26059664 ATATATATGT
1 ATATATATGT
* *
26059674 ATGTACA--T
1 ATATATATGT
26059682 ATATATATGT
1 ATATATATGT
* *
26059692 ATGCATACATAT
1 AT--ATATATGT
*
26059704 ATATGTATGT
1 ATATATATGT
*
26059714 ACATATATGT
1 ATATATATGT
*
26059724 ATATACATGT
1 ATATATATGT
* *
26059734 ATACATA--C
1 ATATATATGT
26059742 ATATATATGT
1 ATATATATGT
* ***
26059752 ATACATAAACAC
1 AT--ATATATGT
*
26059764 ATATATGTGT
1 ATATATATGT
*
26059774 ATACATATGT
1 ATATATATGT
*
26059784 ATATACATAGAT
1 ATATATAT-G-T
*
26059796 ATACATATGT
1 ATATATATGT
26059806 ATATATATTTGT
1 ATATATA--TGT
26059818 ATATATAT-T
1 ATATATATGT
* *
26059827 -TGTATATAT
1 ATATATATGT
*
26059836 ACATATATGT
1 ATATATATGT
**
26059846 ATATGCATGT
1 ATATATATGT
*
26059856 ACACATATATGT
1 --ATATATATGT
* * *
26059868 ACATACATAT
1 ATATATATGT
*
26059878 ACATATATGT
1 ATATATATGT
*
26059888 ATACATATGT
1 ATATATATGT
* * *
26059898 ACACATATAT
1 ATATATATGT
* * *
26059908 ACATACATAT
1 ATATATATGT
* **
26059918 ATACATACAT
1 ATATATATGT
*
26059928 ATACATATGTTT
1 ATATATATG--T
*
26059940 ATGTATATGTAT
1 ATATATATG--T
26059952 ATATATATGT
1 ATATATATGT
26059962 ATGTATATATGT
1 A--TATATATGT
* *
26059974 GTACATATGT
1 ATATATATGT
*
26059984 ATACATATATGC
1 AT--ATATATGT
26059996 ATATATA
1 ATATATA
26060003 CATATATTGA
Statistics
Matches: 504, Mismatches: 127, Indels: 90
0.70 0.18 0.12
Matches are distributed among these distances:
6 6 0.01
8 36 0.07
9 8 0.02
10 297 0.59
11 11 0.02
12 129 0.26
13 8 0.02
14 8 0.02
15 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (10 bp):
ATATATATGT
Found at i:26059414 original size:25 final size:26
Alignment explanation
Indices: 26059384--26059705 Score: 89
Period size: 26 Copynumber: 11.9 Consensus size: 26
26059374 TATTTATATG
**
26059384 CATATATATGTATGTACATA-ATGTA
1 CATATATATGTACATACATATATGTA
26059409 CATATATATGTACATACATATATGTA
1 CATATATATGTACATACATATATGTA
* * * *
26059435 GATATATGTATACATGTATATATATGTA
1 CATATATATGTACA--TACATATATGTA
* *
26059463 TGTTATATGTATATGTA-ATAGATATATG--
1 ---CATA--TATATGTACATACATATATGTA
* *
26059491 CATATATATGTATATGTATATGTATATGTA
1 CATATATATGTACA--TACA--TATATGTA
* * **
26059521 TATGTATATGT--ATATGTATATGTA
1 CATATATATGTACATACATATATGTA
* * * **
26059545 TATAGATATGCATATATATGTATATGTA
1 CATATATATG--TACATACATATATGTA
* * * *
26059573 GATATATGTATACATACATATATATA
1 CATATATATGTACATACATATATGTA
* * * * *
26059599 TATAGATATATGCATATATATATGTA
1 CATATATATGTACATACATATATGTA
* * * * *
26059625 TATAGATATATGCATATATATATGTA
1 CATATATATGTACATACATATATGTA
* * * * *
26059651 TATAGATATATGCATATATATGTATGTA
1 CAT--ATATATGTACATACATATATGTA
26059679 CATATATATATGTATGCATACATATAT
1 C--ATATATATGTA--CATACATATAT
26059706 ATGTATGTAC
Statistics
Matches: 230, Mismatches: 42, Indels: 45
0.73 0.13 0.14
Matches are distributed among these distances:
23 8 0.03
24 17 0.07
25 21 0.09
26 84 0.37
28 62 0.27
30 28 0.12
31 3 0.01
32 1 0.00
33 6 0.03
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (26 bp):
CATATATATGTACATACATATATGTA
Found at i:26059447 original size:22 final size:22
Alignment explanation
Indices: 26059275--26062115 Score: 451
Period size: 22 Copynumber: 129.3 Consensus size: 22
26059265 ACATAAACAT
* * *
26059275 ATATATGTATACATATATATAC
1 ATATATATATATATATGTATAC
*
26059297 ATA-A-ACATATATATGTATAC
1 ATATATATATATATATGTATAC
* * *
26059317 ATATATATTTATAAATATATAC
1 ATATATATATATATATGTATAC
*
26059339 ATATATGTATATATATGTATAC
1 ATATATATATATATATGTATAC
* * *
26059361 ATATACATATATGTAT-T-TAT
1 ATATATATATATATATGTATAC
** *
26059381 ATGCATATATATGTATG--TAC
1 ATATATATATATATATGTATAC
* *
26059401 ATAATGTACATATATATGTACATAC
1 AT-ATATATATATATATGT--ATAC
* *
26059426 ATATATGTAGATATATGTATAC
1 ATATATATATATATATGTATAC
* * *
26059448 ATGTATATATATGTATGT-TAT
1 ATATATATATATATATGTATAC
* * * * *
26059469 ATGTATATGTAATAGATATATGC
1 ATATATATAT-ATATATGTATAC
* * * **
26059492 ATATATATGTATATGTATATGT
1 ATATATATATATATATGTATAC
* * *
26059514 ATATGTATATGTATATGTATATGT
1 ATATATATATATATATGTATA--C
* * * *
26059538 ATATGTATATAGATATGCATAT
1 ATATATATATATATATGTATAC
* * * * **
26059560 ATATGTATATGTAGATATATGT
1 ATATATATATATATATGTATAC
* * * *
26059582 ATACATACATATATATATATAG
1 ATATATATATATATATGTATAC
*
26059604 ATATATGCATATATATATGTATATAG
1 ATATAT--ATATATATATG--TATAC
*
26059630 ATATATGCATATATATATGTATAT
1 ATATAT--ATATATATATGTATAC
*
26059654 AGATATATGCATATATATG--T--
1 ATATATAT--ATATATATGTATAC
* * *
26059674 ATGTACATATATATATGTATGC
1 ATATATATATATATATGTATAC
* *
26059696 ATACATATATATGTATG--TAC
1 ATATATATATATATATGTATAC
* *
26059716 ATATATGTATATACATGTATAC
1 ATATATATATATATATGTATAC
*
26059738 ----ATACATATATATGTATAC
1 ATATATATATATATATGTATAC
* * * *
26059756 ATAAACACATATATGTGTATAC
1 ATATATATATATATATGTATAC
* *
26059778 ATATGTATATACATA-GATATAC
1 ATATATATATATATATG-TATAC
* *
26059800 ATATGTATATATATTTGTAT--
1 ATATATATATATATATGTATAC
*
26059820 ATATAT-T-TGTATA--TATAC
1 ATATATATATATATATGTATAC
* ** *
26059838 ATATATGTATATGCATGTACAC
1 ATATATATATATATATGTATAC
* * *
26059860 ATATATGTACATACA--TATAC
1 ATATATATATATATATGTATAC
* * *
26059880 ATATATGTATACATATGTACAC
1 ATATATATATATATATGTATAC
* *
26059902 ATATATACATACATA--TATAC
1 ATATATATATATATATGTATAC
* * * * **
26059922 ATACATATACATATGTTTATGT
1 ATATATATATATATATGTATAC
* **
26059944 ATATGTATATATATATGTATGT
1 ATATATATATATATATGTATAC
* * *
26059966 ATATATGTGTACATATGTATAC
1 ATATATATATATATATGTATAC
* * **
26059988 ATATATGCATATATACATATATTG
1 ATATAT--ATATATATATGTATAC
** * * *
26060012 ATGGGATA-ATGA-AGA-GCATGC
1 AT-ATATATAT-ATATATGTATAC
* ** ** * *
26060033 AGAGGTAT-TGCA-AGGCCTATAG
1 ATATATATATATATATG--TATAC
* ** *** *
26060055 GT-TGAGGTA-GCCT-TGAAACTAC
1 ATAT-ATATATATATATG-TA-TAC
* * ** * * *
26060077 A-ACTACA-ATGTGCGCACGCACAC
1 ATA-TATATATAT--ATATGTATAC
* * * * *
26060100 ATATAAAAACATATATATATAT
1 ATATATATATATATATGTATAC
* * * * *
26060122 GTGTATATATACGTATATATGTAT
1 ATATATATATA--TATATGTATAC
*
26060146 GTATATATATATATATGTAT--
1 ATATATATATATATATGTATAC
* * * *
26060166 GTATATGTATGTATATGTATAT
1 ATATATATATATATATGTATAC
* * * *
26060188 GTATGTATATGTATACGTATAC
1 ATATATATATATATATGTATAC
* *
26060210 ATATATATATACATATATATGTAC
1 ATATATATAT--ATATATGTATAC
* **
26060234 ATATATATGTACGTATACATATAC
1 ATATATATATA--TATATGTATAC
* **
26060258 ATACATATATATATATACATAC
1 ATATATATATATATATGTATAC
*** *
26060280 ATATATACGTATATATACACATAT
1 ATATATA--TATATATATGTATAC
* * * *
26060304 ATATTTGTACATATATGTACATAT
1 ATATATATATATATATGT--ATAC
* **
26060328 ATATGTATATATATATGTATGT
1 ATATATATATATATATGTATAC
* * *
26060350 ATATGTATACGTGCATATATGTACAT
1 ATATATATA--T--ATATATGTATAC
* * *
26060376 ATACGTATATACATACATATATAC
1 ATA--TATATATATATATGTATAC
* * ** *
26060400 ATATATACATATATCTACATAT
1 ATATATATATATATATGTATAC
* * * *
26060422 ATATGTATGTATACATATATGAAC
1 ATATATATATATATATGTAT--AC
* * *
26060446 ATA-A-ATGTACATATGTAAAC
1 ATATATATATATATATGTATAC
* * *
26060466 ATACATACATATATATATATAC
1 ATATATATATATATATGTATAC
*
26060488 ATATATGTATATATATGT-T-C
1 ATATATATATATATATGTATAC
* * ***
26060508 ATATGTGTATATATACACATAC
1 ATATATATATATATATGTATAC
* * *
26060530 GTATACATATGTATATGTAT--
1 ATATATATATATATATGTATAC
* * * *
26060550 ATGTACATATATATGTATATAC
1 ATATATATATATATATGTATAC
* * *
26060572 ATATATGTATACGTATGTGTATAT
1 ATATATATATA--TATATGTATAC
* * * * **
26060596 ATATATACACACATATATCTTTTT
1 ATATAT--ATATATATATGTATAC
* * **
26060620 ATATACACATATATATGTATGT
1 ATATATATATATATATGTATAC
* *
26060642 ATATATATGTATATATGTGT--
1 ATATATATATATATATGTATAC
* *
26060662 ATATCTATGTATAT-T-TAT--
1 ATATATATATATATATGTATAC
* * * * *
26060680 GTATATATGTGTATGTGTATAT
1 ATATATATATATATATGTATAC
*
26060702 ATATATATATATATGCATGTATAT
1 ATATATATATATAT--ATGTATAC
* *
26060726 ATATGTATATATATATGTGTAC
1 ATATATATATATATATGTATAC
* * *
26060748 ATATATATGTATGTATGTTTAC
1 ATATATATATATATATGTATAC
* * * *
26060770 ATATGTACATATATGT-TCATAT
1 ATATATATATATATATGT-ATAC
* * * * *
26060792 ATGTATACATACATATATATGTAT
1 A--TATATATATATATATGTATAC
* * * *
26060816 ATGTATGTATATATATGTGTAT
1 ATATATATATATATATGTATAC
* *
26060838 ATGTATATATGCATATATGTATAT
1 ATATATATAT--ATATATGTATAC
* * *
26060862 ATATATATGTGTATATGTATAT
1 ATATATATATATATATGTATAC
* * * *
26060884 ATGTATATATATGTATATATAT
1 ATATATATATATATATGTATAC
* * * *
26060906 GTGTATATGTATACGTATGTGT--
1 ATATATATATATA--TATGTATAC
*** *
26060928 ATATATATATATATACACACAC
1 ATATATATATATATATGTATAC
* * ** *
26060950 ATATATATTTTTATATACACAC
1 ATATATATATATATATGTATAC
* **
26060972 ATATATATATAT-TATATATGT
1 ATATATATATATATATGTATAC
* * * **
26060993 ATGTATATATATGTATATATGT
1 ATATATATATATATATGTATAC
* *
26061015 GTATATGTATATATATGTAT--
1 ATATATATATATATATGTATAC
* * * *
26061035 ATATGTGTATATCTATGTATATTT
1 ATATATATATATATATGTATA--C
* * * * *
26061059 ATGTATATATGTGTATGTGTAT
1 ATATATATATATATATGTATAC
** *
26061081 ATATATATATATGCATGTATAT
1 ATATATATATATATATGTATAC
* *
26061103 ATATGTATATATATATGTGTAC
1 ATATATATATATATATGTATAC
* * *
26061125 ATATATATGTATGTATGTTTAC
1 ATATATATATATATATGTATAC
* * *
26061147 A-A-ATGTACATATATGTTCATAT
1 ATATATATATATATATG-T-ATAC
* * * * **
26061169 ATGTATACATACATATATATGT
1 ATATATATATATATATGTATAC
* * *
26061191 ATATGTATGTATATATGTATAT
1 ATATATATATATATATGTATAC
* * *
26061213 ATATGTATGTATATATATGTGTAT
1 ATA--TATATATATATATGTATAC
*
26061237 ATGTATATATGCATATATGTAT--
1 ATATATATAT--ATATATGTATAC
* * * *
26061259 ATATATGTGTGTATATGTATAT
1 ATATATATATATATATGTATAC
* * * *
26061281 ATGTATATATATGTATATATAT
1 ATATATATATATATATGTATAC
* * * *
26061303 GTGTATATGTATATATGTATAT
1 ATATATATATATATATGTATAC
* * * *
26061325 ATATGTATATATATGTTTATAT
1 ATATATATATATATATGTATAC
* * * **
26061347 GTATATATATGTATATATATGT
1 ATATATATATATATATGTATAC
* * *
26061369 TTATATGTATATATATGTATAT
1 ATATATATATATATATGTATAC
* * * *
26061391 ATATATGTGTATGTATGTATAT
1 ATATATATATATATATGTATAC
* * * ** *
26061413 ATATGTGTGTAGGTATGTATGTAT
1 ATATATATATATATATGTA--TAC
* * * **
26061437 ATATATGTATGTATATATATGT
1 ATATATATATATATATGTATAC
* * * *
26061459 GTATATGTGTATATATGTATAT
1 ATATATATATATATATGTATAC
* **
26061481 ATATGTATATATATATGTATGT
1 ATATATATATATATATGTATAC
* *
26061503 ATATATATGTATATATGTATAT
1 ATATATATATATATATGTATAC
* * *
26061525 ATGTATATATATGTATGTATAT
1 ATATATATATATATATGTATAC
* *
26061547 ATAT-TATGTATATATGTATAT
1 ATATATATATATATATGTATAC
* * *
26061568 ATGTATATATATGTATGTATAT
1 ATATATATATATATATGTATAC
* *
26061590 ATAT-TATGTATATATGTATAT
1 ATATATATATATATATGTATAC
26061611 ATATATATGCATGTATATATGCATATAC
1 ATATATAT--A--TATATATG--TATAC
* *
26061639 ATATATGTATACATATG--T--
1 ATATATATATATATATGTATAC
* *
26061657 GTATATACATATATATGTATA-
1 ATATATATATATATATGTATAC
* ** *
26061678 A-ATATATATATGTACATATAT
1 ATATATATATATATATGTATAC
* * *
26061699 ATATGTATATATGTAT-AATA-
1 ATATATATATATATATGTATAC
* * *
26061719 ATATATATATATGTAATATATAT
1 ATATATATATATAT-ATGTATAC
* *
26061742 ATTTATACATATATATGTAT--
1 ATATATATATATATATGTATAC
* * *
26061762 ATACACATATGTAT-TCGTAT--
1 ATATATATATATATAT-GTATAC
* * ** *
26061782 GTGTATATATATATATACACAC
1 ATATATATATATATATGTATAC
* *
26061804 ATATATATTTATATA--TACAC
1 ATATATATATATATATGTATAC
* * * *
26061824 ATATATATGTATGTATATATAT
1 ATATATATATATATATGTATAC
* *
26061846 GTATATATGTATATATG--T--
1 ATATATATATATATATGTATAC
* *
26061864 GTATATGTATATATATGTAT--
1 ATATATATATATATATGTATAC
* * * *
26061884 ATATGTGTATATCTATGTATAT
1 ATATATATATATATATGTATAC
* * * **
26061906 TTATGTATAT--ATGTGTATGT
1 ATATATATATATATATGTATAC
* ** *
26061926 GTATATATATATGCATGTATAT
1 ATATATATATATATATGTATAC
** *
26061948 ATGCATATACATATATGTATATGC
1 ATATATATATATATATGTATA--C
* * * *
26061972 ATATATAGATATGTATATGTAC
1 ATATATATATATATATGTATAC
* *
26061994 ATATATGTATATATGTGTTTATAC
1 ATATATATATATATATG--TATAC
* * * *
26062018 ACATATATGTATATATATATGTC
1 ATATATATATATATATGTAT-AC
* *
26062041 ATATACATATACACATATGTAT--
1 ATAT--ATATATATATATGTATAC
* * * *
26062063 ATATATGTATGTATATGCAAATAT
1 ATATATATATATATATG--TATAC
* *
26062087 ATATAAAATATATGTATGTATAC
1 ATAT-ATATATATATATGTATAC
26062110 ATATAT
1 ATATAT
26062116 GTGTGTATAT
Statistics
Matches: 2065, Mismatches: 590, Indels: 328
0.69 0.20 0.11
Matches are distributed among these distances:
16 3 0.00
18 75 0.04
19 6 0.00
20 318 0.15
21 96 0.05
22 1058 0.51
23 43 0.02
24 372 0.18
25 30 0.01
26 48 0.02
28 16 0.01
ACGTcount: A:0.39, C:0.06, G:0.11, T:0.44
Consensus pattern (22 bp):
ATATATATATATATATGTATAC
Found at i:26059477 original size:6 final size:6
Alignment explanation
Indices: 26059437--26059675 Score: 164
Period size: 6 Copynumber: 40.5 Consensus size: 6
26059427 TATATGTAGA
*
26059437 TATATG TATACATG TATA-- TATATG TATGT- TATATG TATATG TA-ATAG
1 TATATG TAT--ATG TATATG TATATG TATATG TATATG TATATG TATAT-G
*
26059484 ATATATG CATA-- TATATG TATATG TATATG TATATG TATATG TATATG
1 -TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
* *
26059531 TATATG TATATG TATATAG -ATATG CATA-- TATATG TATATG TAGA--
1 TATATG TATATG TATAT-G TATATG TATATG TATATG TATATG TATATG
** * * * * *
26059575 TATATG TATACA TACATA TATATA TATA-G ATATATG CATATA TATATG
1 TATATG TATATG TATATG TATATG TATATG -TATATG TATATG TATATG
* * *
26059623 TATATAG ATATATG CATATA TATATG TATATAG ATATATG CATA-- TATATG
1 TATAT-G -TATATG TATATG TATATG TATAT-G -TATATG TATATG TATATG
26059673 TAT
1 TAT
26059676 GTACATATAT
Statistics
Matches: 186, Mismatches: 23, Indels: 48
0.72 0.09 0.19
Matches are distributed among these distances:
4 16 0.09
5 7 0.04
6 136 0.73
7 9 0.05
8 18 0.10
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.44
Consensus pattern (6 bp):
TATATG
Found at i:26059765 original size:26 final size:26
Alignment explanation
Indices: 26059713--26059766 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
26059703 TATATGTATG
* ** *
26059713 TACATATATGTATATACATGTATACA
1 TACATATATATATATACATAAACACA
*
26059739 TACATATATATGTATACATAAACACA
1 TACATATATATATATACATAAACACA
26059765 TA
1 TA
26059767 TATGTGTATA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (26 bp):
TACATATATATATATACATAAACACA
Found at i:26059890 original size:42 final size:40
Alignment explanation
Indices: 26059832--26059918 Score: 129
Period size: 42 Copynumber: 2.1 Consensus size: 40
26059822 ATATTTGTAT
**
26059832 ATATACATATATGTATATGCATGTACACATATATGTACATAC
1 ATATACATATATGTATACACATGTACACATATA--TACATAC
*
26059874 ATATACATATATGTATACATATGTACACATATATACATAC
1 ATATACATATATGTATACACATGTACACATATATACATAC
26059914 ATATA
1 ATATA
26059919 TACATACATA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
40 12 0.29
42 30 0.71
ACGTcount: A:0.44, C:0.14, G:0.07, T:0.36
Consensus pattern (40 bp):
ATATACATATATGTATACACATGTACACATATATACATAC
Found at i:26060128 original size:10 final size:10
Alignment explanation
Indices: 26060110--26062108 Score: 869
Period size: 10 Copynumber: 199.3 Consensus size: 10
26060100 ATATAAAAAC
*
26060110 ATATATATAT
1 ATATGTATAT
*
26060120 ATGTGTATAT
1 ATATGTATAT
*
26060130 ATACGTATAT
1 ATATGTATAT
26060140 ATGTATGTATAT
1 A--TATGTATAT
*
26060152 ATATATATAT
1 ATATGTATAT
*
26060162 GTATGTATAT
1 ATATGTATAT
*
26060172 GTATGTATATGT
1 ATATGTATA--T
*
26060184 ATATGTATGT
1 ATATGTATAT
26060194 ATATGTATACGT
1 ATATGTATA--T
**
26060206 ATACATATAT
1 ATATGTATAT
**
26060216 ATATACATAT
1 ATATGTATAT
26060226 ATATGTACATAT
1 ATATGT--ATAT
26060238 ATATGTACGTAT
1 ATATGTA--TAT
* *
26060250 ACATATACATACAT
1 --ATAT--GTATAT
*
26060264 ATATATATAT
1 ATATGTATAT
* **
26060274 ACATACATAT
1 ATATGTATAT
*
26060284 ATACGTATAT
1 ATATGTATAT
**
26060294 ATACACATATAT
1 AT--ATGTATAT
* *
26060306 ATTTGTACAT
1 ATATGTATAT
26060316 ATATGTACATAT
1 ATATGT--ATAT
26060328 ATATGTATAT
1 ATATGTATAT
*
26060338 ATA--TATGT
1 ATATGTATAT
* * *
26060346 ATGTATATGT
1 ATATGTATAT
* **
26060356 ATACGTGCAT
1 ATATGTATAT
*
26060366 ATATGTACAT
1 ATATGTATAT
*
26060376 ATACGTATAT
1 ATATGTATAT
* **
26060386 ACATACATAT
1 ATATGTATAT
**
26060396 ATACATATAT
1 ATATGTATAT
* * *
26060406 ACATATATCT
1 ATATGTATAT
* *
26060416 ACATATATAT
1 ATATGTATAT
*
26060426 GTATGTATACAT
1 ATATGTAT--AT
* *
26060438 ATATGAACAT
1 ATATGTATAT
*
26060448 AAATGTACATAT
1 ATATGT--ATAT
* *** *
26060460 GTAAACATAC
1 ATATGTATAT
**
26060470 ATACATATAT
1 ATATGTATAT
* *
26060480 ATATATACAT
1 ATATGTATAT
26060490 ATATGTATAT
1 ATATGTATAT
*
26060500 ATATGT-T-C
1 ATATGTATAT
*
26060508 ATATGTGTAT
1 ATATGTATAT
* *
26060518 ATA--TACAC
1 ATATGTATAT
* *
26060526 ATACGTATAC
1 ATATGTATAT
26060536 ATATGTATATGT
1 ATATGTATA--T
26060548 ATATGTACATAT
1 ATATGT--ATAT
26060560 ATATGTATATACAT
1 ATATG--TAT--AT
26060574 ATATGTATACGT
1 ATATGTATA--T
*
26060586 ATGTGTATAT
1 ATATGTATAT
* * *
26060596 ATATATACAC
1 ATATGTATAT
* * *
26060606 ACATATATCT
1 ATATGTATAT
* * * *
26060616 TTTTATATAC
1 ATATGTATAT
* *
26060626 ACATATATAT
1 ATATGTATAT
*
26060636 GTATGTATAT
1 ATATGTATAT
26060646 ATATGTATAT
1 ATATGTATAT
*
26060656 ATGTGTATAT
1 ATATGTATAT
*
26060666 CTATGTATAT
1 ATATGTATAT
*
26060676 TTATGTATAT
1 ATATGTATAT
* *
26060686 ATGTGTATGT
1 ATATGTATAT
* *
26060696 GTATATATAT
1 ATATGTATAT
*
26060706 ATATATATAT
1 ATATGTATAT
**
26060716 GCATGTATAT
1 ATATGTATAT
26060726 ATATGTATATAT
1 ATATG--TATAT
*
26060738 ATATGTGTACAT
1 ATA--TGTATAT
* *
26060750 ATATATGTAT
1 ATATGTATAT
* * *
26060760 GTATGTTTAC
1 ATATGTATAT
*
26060770 ATATGTACAT
1 ATATGTATAT
26060780 ATATGT-TCAT
1 ATATGTAT-AT
*
26060790 ATATGTATAC
1 ATATGTATAT
*
26060800 ATA--CATAT
1 ATATGTATAT
26060808 ATATGTATAT
1 ATATGTATAT
*
26060818 GTATGTATAT
1 ATATGTATAT
26060828 ATATGTGTATAT
1 ATA--TGTATAT
* *
26060840 GTATATATGCAT
1 ATATGTAT--AT
26060852 ATATGTATAT
1 ATATGTATAT
* *
26060862 ATATATATGT
1 ATATGTATAT
* * *
26060872 GTATATGTAT
1 ATATGTATAT
26060882 ATATGTATAT
1 ATATGTATAT
26060892 ATATGTATAT
1 ATATGTATAT
*
26060902 ATATG--TGT
1 ATATGTATAT
26060910 ATATGTATACGT
1 ATATGTATA--T
*
26060922 ATGTGTATAT
1 ATATGTATAT
*
26060932 ATATATATAT
1 ATATGTATAT
* *** *
26060942 ACACACACAT
1 ATATGTATAT
* * *
26060952 ATATATTTTT
1 ATATGTATAT
** * *
26060962 ATATACACAC
1 ATATGTATAT
*
26060972 ATATATATAT
1 ATATGTATAT
*
26060982 AT-TATATAT
1 ATATGTATAT
*
26060991 GTATGTATAT
1 ATATGTATAT
26061001 ATATG--TAT
1 ATATGTATAT
*
26061009 ATATG--TGT
1 ATATGTATAT
26061017 ATATGTATAT
1 ATATGTATAT
26061027 ATATGTATAT
1 ATATGTATAT
*
26061037 ATGTGTATAT
1 ATATGTATAT
*
26061047 CTATGTATAT
1 ATATGTATAT
*
26061057 TTATGTATAT
1 ATATGTATAT
* *
26061067 ATGTGTATGTGT
1 ATATGTA--TAT
*
26061079 ATATATATAT
1 ATATGTATAT
* *
26061089 ATATGCATGT
1 ATATGTATAT
26061099 ATA--TATAT
1 ATATGTATAT
* *
26061107 GTATATATAT
1 ATATGTATAT
* *
26061117 ATGTGTACAT
1 ATATGTATAT
* *
26061127 ATATATGTAT
1 ATATGTATAT
* * *
26061137 GTATGTTTAC
1 ATATGTATAT
* *
26061147 AAATGTACAT
1 ATATGTATAT
26061157 ATATGT-TCAT
1 ATATGTAT-AT
*
26061167 ATATGTATAC
1 ATATGTATAT
*
26061177 ATA--CATAT
1 ATATGTATAT
26061185 ATATGTATAT
1 ATATGTATAT
*
26061195 GTATGTATAT
1 ATATGTATAT
*
26061205 ATGTATATATAT
1 A--TATGTATAT
*
26061217 GTATGTATAT
1 ATATGTATAT
26061227 ATATGTGTATAT
1 ATA--TGTATAT
* *
26061239 GTATATATGCAT
1 ATATGTAT--AT
26061251 ATATGTATAT
1 ATATGTATAT
* *
26061261 ATATGTGTGT
1 ATATGTATAT
26061271 ATATG--TAT
1 ATATGTATAT
26061279 ATATGTATAT
1 ATATGTATAT
26061289 ATATGTATAT
1 ATATGTATAT
*
26061299 ATATG--TGT
1 ATATGTATAT
26061307 ATATG--TAT
1 ATATGTATAT
26061315 ATATGTATAT
1 ATATGTATAT
26061325 ATATGTATAT
1 ATATGTATAT
26061335 ATATGT-T-T
1 ATATGTATAT
26061343 ATATGTATAT
1 ATATGTATAT
26061353 ATATGTATAT
1 ATATGTATAT
26061363 ATATGT-T-T
1 ATATGTATAT
26061371 ATATGTATAT
1 ATATGTATAT
26061381 ATATGTATATAT
1 ATATG--TATAT
*
26061393 ATATGTGTAT
1 ATATGTATAT
*
26061403 GTATGTATAT
1 ATATGTATAT
* *
26061413 ATATGTGTGT
1 ATATGTATAT
*
26061423 AGGTATGTATGT
1 A--TATGTATAT
26061435 ATA--TATAT
1 ATATGTATAT
*
26061443 GTATGTATAT
1 ATATGTATAT
*
26061453 ATATG--TGT
1 ATATGTATAT
*
26061461 ATATGTGTAT
1 ATATGTATAT
26061471 ATATGTATAT
1 ATATGTATAT
26061481 ATATG--TAT
1 ATATGTATAT
26061489 ATA--TATAT
1 ATATGTATAT
*
26061497 GTATGTATAT
1 ATATGTATAT
26061507 ATATGTATAT
1 ATATGTATAT
* *
26061517 ATGTATATAT
1 ATATGTATAT
* *
26061527 GTATATATAT
1 ATATGTATAT
*
26061537 GTATGTATAT
1 ATATGTATAT
*
26061547 ATAT-TATGT
1 ATATGTATAT
* *
26061556 ATATATGTAT
1 ATATGTATAT
26061566 ATATGTATAT
1 ATATGTATAT
*
26061576 ATATGTATGT
1 ATATGTATAT
26061586 ATA--TATAT
1 ATATGTATAT
26061594 -TATG--TAT
1 ATATGTATAT
26061601 ATATGTATAT
1 ATATGTATAT
26061611 ATA--TATAT
1 ATATGTATAT
**
26061619 GCATGTATAT
1 ATATGTATAT
* *
26061629 ATGCATATACAT
1 AT--ATGTATAT
*
26061641 ATATGTATAC
1 ATATGTATAT
*
26061651 ATATGTGTAT
1 ATATGTATAT
*
26061661 ATA--CATAT
1 ATATGTATAT
*
26061669 ATATGTATAA
1 ATATGTATAT
*
26061679 ATATATATAT
1 ATATGTATAT
* **
26061689 GTACATATAT
1 ATATGTATAT
26061699 ATATG--TAT
1 ATATGTATAT
26061707 ATATGTATA-
1 ATATGTATAT
*
26061716 ATAATATATAT
1 AT-ATGTATAT
26061727 ATATGTAATAT
1 ATATGT-ATAT
* *
26061738 ATATATTTAT
1 ATATGTATAT
* *
26061748 ACATATATAT
1 ATATGTATAT
* * * *
26061758 GTATATACAC
1 ATATGTATAT
26061768 ATATGTAT-T
1 ATATGTATAT
* *
26061777 CGTATGTGTAT
1 -ATATGTATAT
*
26061788 ATATATATAT
1 ATATGTATAT
* ***
26061798 ACACACATAT
1 ATATGTATAT
*
26061808 ATATTTATAT
1 ATATGTATAT
***
26061818 ATACACATAT
1 ATATGTATAT
*
26061828 ATATGTATGT
1 ATATGTATAT
* *
26061838 ATATATATGT
1 ATATGTATAT
* *
26061848 ATATATGTAT
1 ATATGTATAT
*
26061858 ATATG--TGT
1 ATATGTATAT
26061866 ATATGTATAT
1 ATATGTATAT
26061876 ATATGTATAT
1 ATATGTATAT
*
26061886 ATGTGTATAT
1 ATATGTATAT
*
26061896 CTATGTATAT
1 ATATGTATAT
*
26061906 TTATGTATAT
1 ATATGTATAT
* *
26061916 ATGTGTATGT
1 ATATGTATAT
*
26061926 GTA--TATAT
1 ATATGTATAT
*
26061934 ATATGCATGTAT
1 ATATG--TATAT
*
26061946 ATATGCATAT
1 ATATGTATAT
* * *
26061956 ACATATATGT
1 ATATGTATAT
*
26061966 ATATGCATAT
1 ATATGTATAT
*
26061976 ATA-GATATGT
1 ATATG-TATAT
*
26061986 ATATGTACAT
1 ATATGTATAT
26061996 ATATGTATAT
1 ATATGTATAT
*
26062006 ATGTGT-T-T
1 ATATGTATAT
***
26062014 ATACACATAT
1 ATATGTATAT
* *
26062024 ATGTATATAT
1 ATATGTATAT
26062034 ATATGTCATAT
1 ATATGT-ATAT
* * * *
26062045 ACATATACAC
1 ATATGTATAT
26062055 ATATGTATAT
1 ATATGTATAT
*
26062065 ATATGTATGT
1 ATATGTATAT
* *
26062075 ATATGCAAAT
1 ATATGTATAT
* *
26062085 ATATATAAAAT
1 ATATGT-ATAT
*
26062096 ATATGTATGT
1 ATATGTATAT
26062106 ATA
1 ATA
26062109 CATATATGTG
Statistics
Matches: 1485, Mismatches: 382, Indels: 244
0.70 0.18 0.12
Matches are distributed among these distances:
7 5 0.00
8 159 0.11
9 27 0.02
10 1035 0.70
11 32 0.02
12 206 0.14
14 19 0.01
16 2 0.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (10 bp):
ATATGTATAT
Found at i:26060129 original size:16 final size:16
Alignment explanation
Indices: 26060110--26062126 Score: 827
Period size: 16 Copynumber: 123.9 Consensus size: 16
26060100 ATATAAAAAC
* * *
26060110 ATATATATATATGTGT
1 ATATATATGTATATAT
*
26060126 ATATATACGTATATAT
1 ATATATATGTATATAT
* * *
26060142 GTATGTATATATATAT
1 ATATATATGTATATAT
* *
26060158 ATATGTATGTATATGT
1 ATATATATGTATATAT
* *
26060174 ATGTATATGTATATGT
1 ATATATATGTATATAT
* **
26060190 ATGTATATGTATACGT
1 ATATATATGTATATAT
* * *
26060206 ATACATATATATATAC
1 ATATATATGTATATAT
*
26060222 ATATATATGTACATAT
1 ATATATATGTATATAT
* * *
26060238 ATATGTACGTATACAT
1 ATATATATGTATATAT
* **
26060254 ATACATACATATATAT
1 ATATATATGTATATAT
* **
26060270 ATATACATACATATAT
1 ATATATATGTATATAT
** * * *
26060286 ACGTATATATACACAT
1 ATATATATGTATATAT
*
26060302 ATATATTTGTACATATAT
1 ATATATATGT--ATATAT
* * * *
26060320 GTACATATATATGTAT
1 ATATATATGTATATAT
*
26060336 ATATATATGTATGTAT
1 ATATATATGTATATAT
* *
26060352 ATGTATACGTGCATATATGT
1 ATATATA--TG--TATATAT
* * *
26060372 ACATATACGTATATAC
1 ATATATATGTATATAT
* *
26060388 ATACATA--TATACAT
1 ATATATATGTATATAT
* * * *
26060402 ATATACATATATCTAC
1 ATATATATGTATATAT
*
26060418 ATATATATGTATGTAT
1 ATATATATGTATATAT
* * *
26060434 ACATATATGAACATAAAT
1 ATATATATG--TATATAT
* * * *
26060452 GTACATATGTAAACATAC
1 ATATATATGT--ATATAT
* *
26060470 ATACATATATATATAT
1 ATATATATGTATATAT
*
26060486 ACATATATGTATATAT
1 ATATATATGTATATAT
*
26060502 ATGTTCATATGTGTATATAT
1 A---T-ATATATGTATATAT
* * * *
26060522 ACACATACGTATACAT
1 ATATATATGTATATAT
* *
26060538 ATGTATATGTATATGTAC
1 ATATATATGTATA--TAT
26060556 ATATATATGTATATACAT
1 ATATATATGTATAT--AT
* *
26060574 ATATGTATACGTATGTGTAT
1 ATA--TATATGTA--TATAT
** * *
26060594 ATATATATACACACAT
1 ATATATATGTATATAT
* * * *
26060610 ATATCTTTTTATATAC
1 ATATATATGTATATAT
* * * *
26060626 ACATATATATGTATGT
1 ATATATATGTATATAT
26060642 ATATATATGTATATAT
1 ATATATATGTATATAT
* * * *
26060658 GTGTATATCTATGTAT
1 ATATATATGTATATAT
26060674 AT-T-TATGTATATAT
1 ATATATATGTATATAT
* * *
26060688 GTGTATGTGTATATAT
1 ATATATATGTATATAT
* *
26060704 ATATATATATATGCATGT
1 ATATATATGTAT--ATAT
26060722 ATATATATG--TATAT
1 ATATATATGTATATAT
* *
26060736 ATATATGTGTACATAT
1 ATATATATGTATATAT
* *
26060752 ATATGTATGTATGT-T
1 ATATATATGTATATAT
* *
26060767 -TACATATGTACATAT
1 ATATATATGTATATAT
* * *
26060782 ATGT-TCATATATGTAT
1 ATATAT-ATGTATATAT
* * * *
26060798 ACATACATATATATGT
1 ATATATATGTATATAT
*
26060814 ATATGTATGTATATAT
1 ATATATATGTATATAT
*
26060830 ATGTGTATATGTATATAT
1 A--TATATATGTATATAT
**
26060848 GCATATATGTATATAT
1 ATATATATGTATATAT
* *
26060864 ATATATGTGTATATGT
1 ATATATATGTATATAT
* *
26060880 ATATATGTATATATAT
1 ATATATATGTATATAT
* * * *
26060896 GTATATATATGTGTAT
1 ATATATATGTATATAT
* * * *
26060912 ATGTATACGTATGTGT
1 ATATATATGTATATAT
* *
26060928 ATATATATATATATAC
1 ATATATATGTATATAT
* * * * *
26060944 ACACACATATATATTT
1 ATATATATGTATATAT
* *** *
26060960 TTATATACACACATAT
1 ATATATATGTATATAT
26060976 ATATATAT-TATATAT
1 ATATATATGTATATAT
* * * *
26060991 GTATGTATATATATGT
1 ATATATATGTATATAT
* *
26061007 ATATATGTGTATATGT
1 ATATATATGTATATAT
26061023 ATATATATGTATATAT
1 ATATATATGTATATAT
* * * *
26061039 GTGTATATCTATGTAT
1 ATATATATGTATATAT
26061055 AT-T-TATGTATATAT
1 ATATATATGTATATAT
* * *
26061069 GTGTATGTGTATATAT
1 ATATATATGTATATAT
* *
26061085 ATATATATG--CATGT
1 ATATATATGTATATAT
26061099 ATATATATG--TATAT
1 ATATATATGTATATAT
* *
26061113 ATATATGTGTACATAT
1 ATATATATGTATATAT
* *
26061129 ATATGTATGTATGT-T
1 ATATATATGTATATAT
* *
26061144 -TACAAATGTACATATAT
1 ATATATATGT--ATATAT
* *
26061161 GTTCATATATGTATACATAC
1 -AT-ATATATGTAT--ATAT
26061181 ATATATATGTATATGTAT
1 ATATATATGTATA--TAT
*
26061199 GTATATATGTATATAT
1 ATATATATGTATATAT
* * *
26061215 ATGTATGTATATATAT
1 ATATATATGTATATAT
* *
26061231 GTGTATATGTATATAT
1 ATATATATGTATATAT
**
26061247 GCATATATGTATATAT
1 ATATATATGTATATAT
* * * * *
26061263 ATGTGTGTATATGTAT
1 ATATATATGTATATAT
* * *
26061279 ATATGTATATATATGT
1 ATATATATGTATATAT
*
26061295 ATATATATGTGTATAT
1 ATATATATGTATATAT
*
26061311 GTATATATGTATATAT
1 ATATATATGTATATAT
* * * *
26061327 ATGTATATATATGTTT
1 ATATATATGTATATAT
* * *
26061343 ATATGTATATATATGT
1 ATATATATGTATATAT
*
26061359 ATATATATGTTTATATGT
1 ATATATATG--TATATAT
26061377 ATATATATGTATATAT
1 ATATATATGTATATAT
* *
26061393 ATATGTGTATGTATGTAT
1 ATA--TATATGTATATAT
* * **
26061411 ATATATGTGTGTAGGT
1 ATATATATGTATATAT
* * *
26061427 ATGTATGTATATATAT
1 ATATATATGTATATAT
* * * *
26061443 GTATGTATATATATGT
1 ATATATATGTATATAT
* *
26061459 GTATATGTGTATATATGT
1 ATATATATGTATATA--T
26061477 ATATATATGTATATAT
1 ATATATATGTATATAT
*
26061493 ATATGTATGTATATAT
1 ATATATATGTATATAT
26061509 ATGTATATATGTATATATGT
1 A--TATATATGTATATA--T
*
26061529 ATATATATGTATGTAT
1 ATATATATGTATATAT
26061545 ATATATTATGTATATAT
1 ATATA-TATGTATATAT
*
26061562 GTATATATGTATATAT
1 ATATATATGTATATAT
* *
26061578 ATGTATGTATATATATTAT
1 A--TATATATGTATA-TAT
*
26061597 GTATATATGTATATAT
1 ATATATATGTATATAT
26061613 ATATATGCATGTATATAT
1 ATATAT--ATGTATATAT
* * *
26061631 GCATATACATATATGTAT
1 --ATATATATGTATATAT
* * *
26061649 ACATATGTGTATATAC
1 ATATATATGTATATAT
*
26061665 ATATATATGTATAAAT
1 ATATATATGTATATAT
*
26061681 ATATATATG--TACAT
1 ATATATATGTATATAT
26061695 ATATATATGTATATAT
1 ATATATATGTATATAT
*
26061711 GTATA-A--TA-ATAT
1 ATATATATGTATATAT
26061723 ATATATATGTAATATAT
1 ATATATATGT-ATATAT
**
26061740 ATATTTATACATATATAT
1 ATA--TATATGTATATAT
* *** *
26061758 GTATATACACATATGT
1 ATATATATGTATATAT
* *
26061774 ATTCGTATGTGTATATAT
1 A-T-ATATATGTATATAT
*** *
26061792 ATATATACACACATAT
1 ATATATATGTATATAT
* * * *
26061808 ATATTTATATATACAC
1 ATATATATGTATATAT
*
26061824 ATATATATGTATGTAT
1 ATATATATGTATATAT
* * *
26061840 ATATATGTATATATGT
1 ATATATATGTATATAT
* *
26061856 ATATATGTGTATATGT
1 ATATATATGTATATAT
26061872 ATATATATGTATATAT
1 ATATATATGTATATAT
* * * *
26061888 GTGTATATCTATGTAT
1 ATATATATGTATATAT
26061904 AT-T-TATGTATATAT
1 ATATATATGTATATAT
* * *
26061918 GTGTATGTGTATATAT
1 ATATATATGTATATAT
**
26061934 ATATGCATGTATATAT
1 ATATATATGTATATAT
* * *
26061950 GCATATACATATATGTAT
1 --ATATATATGTATATAT
*
26061968 ATGCATATATAG-ATATGT
1 AT--ATATAT-GTATATAT
* ** *
26061986 ATATGTACATATATGT
1 ATATATATGTATATAT
* * *
26062002 ATATATGTGTTTATAC
1 ATATATATGTATATAT
*
26062018 ACATATATGTATATAT
1 ATATATATGTATATAT
* * *
26062034 ATATGTCATATACATAT
1 ATATAT-ATGTATATAT
* *
26062051 ACACATATG--TATAT
1 ATATATATGTATATAT
* **
26062065 ATATGTATGTATATGC
1 ATATATATGTATATAT
* * *
26062081 AAATATATATA-AAAT
1 ATATATATGTATATAT
* *
26062096 ATATGTATGTATACAT
1 ATATATATGTATATAT
* *
26062112 ATATGTGTGTATATA
1 ATATATATGTATATA
26062127 CATCTATCTG
Statistics
Matches: 1459, Mismatches: 450, Indels: 184
0.70 0.22 0.09
Matches are distributed among these distances:
12 8 0.01
13 3 0.00
14 112 0.08
15 32 0.02
16 950 0.65
17 45 0.03
18 245 0.17
19 10 0.01
20 52 0.04
22 2 0.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (16 bp):
ATATATATGTATATAT
Found at i:26060214 original size:12 final size:12
Alignment explanation
Indices: 26060199--26060304 Score: 77
Period size: 12 Copynumber: 8.8 Consensus size: 12
26060189 TATGTATATG
*
26060199 TATACGTATACA
1 TATACATATACA
*
26060211 TATATATATACA
1 TATACATATACA
* *
26060223 TATATATGTACA
1 TATACATATACA
* * *
26060235 TATATATGTACG
1 TATACATATACA
26060247 TATACATATACA
1 TATACATATACA
* * *
26060259 TACATATATATA
1 TATACATATACA
* *
26060271 TATACATACATA
1 TATACATATACA
* *
26060283 TATACGTATATA
1 TATACATATACA
*
26060295 TACACATATA
1 TATACATATA
26060305 TATTTGTACA
Statistics
Matches: 77, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 77 1.00
ACGTcount: A:0.45, C:0.12, G:0.05, T:0.38
Consensus pattern (12 bp):
TATACATATACA
Found at i:26060317 original size:12 final size:12
Alignment explanation
Indices: 26060264--26060406 Score: 83
Period size: 12 Copynumber: 11.6 Consensus size: 12
26060254 ATACATACAT
*
26060264 ATATATATATAC
1 ATATATATGTAC
* *
26060276 ATACATATATAC
1 ATATATATGTAC
* **
26060288 GTATATATACAC
1 ATATATATGTAC
26060300 ATATATATTTGTAC
1 ATATATA--TGTAC
26060314 --ATATATGTAC
1 ATATATATGTAC
*
26060324 ATATATATGTAT
1 ATATATATGTAC
*
26060336 ATATATATGTAT
1 ATATATATGTAC
* * *
26060348 GTATATGTATAC
1 ATATATATGTAC
*
26060360 GTGCATATATGTAC
1 AT--ATATATGTAC
*
26060374 ATATACGTATATAC
1 ATATA--TATGTAC
* *
26060388 ATACATATATAC
1 ATATATATGTAC
26060400 ATATATA
1 ATATATA
26060407 CATATATCTA
Statistics
Matches: 105, Mismatches: 18, Indels: 16
0.76 0.13 0.12
Matches are distributed among these distances:
10 5 0.05
12 78 0.74
14 22 0.21
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (12 bp):
ATATATATGTAC
Found at i:26060498 original size:18 final size:18
Alignment explanation
Indices: 26060110--26062126 Score: 922
Period size: 18 Copynumber: 110.3 Consensus size: 18
26060100 ATATAAAAAC
*
26060110 ATATATATATATGTGTAT
1 ATATATATATATATGTAT
**
26060128 ATATACGTATATATGTATGT
1 ATATATATATATATGTA--T
26060148 ATATATATATATATGTAT
1 ATATATATATATATGTAT
* * * * *
26060166 GTATATGTATGTATATGT
1 ATATATATATATATGTAT
* *
26060184 ATATGTATGTATATGTAT
1 ATATATATATATATGTAT
* * *
26060202 ACGTATACATATATATATAC
1 A--TATATATATATATGTAT
* * *
26060222 ATATATATGTACATATAT
1 ATATATATATATATGTAT
* * **
26060240 ATGTACGTATACATATACAT
1 ATATA--TATATATATGTAT
* **
26060260 ACATATATATATATACAT
1 ATATATATATATATGTAT
* ** *
26060278 ACATATATACGTATATAT
1 ATATATATATATATGTAT
* * *
26060296 ACACATATATATTTGTACAT
1 ATATATATATATATGT--AT
* * * *
26060316 ATATGTACATATATATGT
1 ATATATATATATATGTAT
*
26060334 ATATATATATGTATGTAT
1 ATATATATATATATGTAT
* *
26060352 ATGTATACGTGCATATATGTAC
1 ATATATA--T--ATATATGTAT
* **
26060374 ATATACGTATATACATACAT
1 ATATA--TATATATATGTAT
* **
26060394 ATATACATATATACATAT
1 ATATATATATATATGTAT
* *
26060412 ATCTACATATATATG--T
1 ATATATATATATATGTAT
* * * *
26060428 ATGTATACATATATGAAC
1 ATATATATATATATGTAT
* * *
26060446 ATAAATGTACATATGTA-
1 ATATATATATATATGTAT
* * * *
26060463 A-ACATACATACATATAT
1 ATATATATATATATGTAT
*
26060480 ATATATACATATATGTAT
1 ATATATATATATATGTAT
* *
26060498 ATATATGT-TCATATGTGT
1 ATATATATAT-ATATGTAT
* * *
26060516 ATATATACACATACG--T
1 ATATATATATATATGTAT
* *
26060532 ATACATATGTATATGTAT
1 ATATATATATATATGTAT
* *
26060550 ATGTACATATATATGTAT
1 ATATATATATATATGTAT
* *
26060568 ATACATATATGTATACGTAT
1 AT--ATATATATATATGTAT
* * *
26060588 GTGTATATATATA--TAC
1 ATATATATATATATGTAT
* * * * *
26060604 ACACATATATCTTTTTAT
1 ATATATATATATATGTAT
* *
26060622 ATACACATATATATGTAT
1 ATATATATATATATGTAT
* *
26060640 GTATATATATGTA--TAT
1 ATATATATATATATGTAT
* * *
26060656 ATGTGTATATCTATGTAT
1 ATATATATATATATGTAT
* *
26060674 ATTTATGTATATATG--T
1 ATATATATATATATGTAT
* * *
26060690 GTATGTGTATATA--TAT
1 ATATATATATATATGTAT
**
26060706 ATATATATATGCATGTAT
1 ATATATATATATATGTAT
* *
26060724 ATATATGTATATATATAT
1 ATATATATATATATGTAT
* * *
26060742 GTGTACATATATATGTAT
1 ATATATATATATATGTAT
* * * * *
26060760 GTATGTTTACATATGTAC
1 ATATATATATATATGTAT
*
26060778 ATATATGTTCATATATGTAT
1 ATATAT-AT-ATATATGTAT
* *
26060798 ACATACATATATATGTAT
1 ATATATATATATATGTAT
* *
26060816 ATGTATGTATATATATGTGT
1 A--TATATATATATATGTAT
* *
26060836 ATATGTATATATGCATATAT
1 ATATATATATAT--ATGTAT
* *
26060856 GTATATATATATATGTGT
1 ATATATATATATATGTAT
* * *
26060874 ATATGTATATATGTATAT
1 ATATATATATATATGTAT
* *
26060892 ATATGTATATATATGTGT
1 ATATATATATATATGTAT
* ** *
26060910 ATATGTATACGTATGTGT
1 ATATATATATATATGTAT
** *
26060928 ATATATATATATATACAC
1 ATATATATATATATGTAT
* * * *
26060946 ACACATATATATTTTTAT
1 ATATATATATATATGTAT
* * * *
26060964 ATACACACATATATATAT
1 ATATATATATATATGTAT
*
26060982 AT-TATATATGTATGTAT
1 ATATATATATATATGTAT
* *
26060999 ATATATGTATATATGTGT
1 ATATATATATATATGTAT
*
26061017 ATATGTATATATATGTAT
1 ATATATATATATATGTAT
* *
26061035 ATATGTGTATATCTATGTAT
1 ATA--TATATATATATGTAT
* * *
26061055 ATTTATGTATATATGTGT
1 ATATATATATATATGTAT
* * *
26061073 ATGTGTATATATATATAT
1 ATATATATATATATGTAT
*
26061091 ATGCATGTATATATATGTAT
1 AT--ATATATATATATGTAT
* * **
26061111 ATATATATGTGTACATAT
1 ATATATATATATATGTAT
* * * * *
26061129 ATATGTATGTATGTTTAC
1 ATATATATATATATGTAT
* * *
26061147 AAATGTACATATATGTTCAT
1 ATATATATATATATG-T-AT
* * **
26061167 ATATGTATACATACATAT
1 ATATATATATATATGTAT
* *
26061185 ATATGTATATGTATGTAT
1 ATATATATATATATGTAT
*
26061203 ATATGTATATATATGTAT
1 ATATATATATATATGTAT
* * * *
26061221 GTATATATATGTGTATAT
1 ATATATATATATATGTAT
*
26061239 GTATATATGCATATATGTAT
1 ATATATAT--ATATATGTAT
* *
26061259 ATATATGTGTGTATATGTAT
1 ATATA--TATATATATGTAT
*
26061279 ATATGTATATATATGTAT
1 ATATATATATATATGTAT
* *
26061297 ATATATGTGTATATGTAT
1 ATATATATATATATGTAT
*
26061315 ATATGTATATATATGTAT
1 ATATATATATATATGTAT
* *
26061333 ATATATGTTTATATGTAT
1 ATATATATATATATGTAT
*
26061351 ATATATGTATATATATGTTT
1 ATATA--TATATATATGTAT
*
26061371 ATATGTATATATATGTAT
1 ATATATATATATATGTAT
* *
26061389 ATATATATGTGTATGTAT
1 ATATATATATATATGTAT
* * * *
26061407 GTATATATATGTGTGTAG
1 ATATATATATATATGTAT
* * * *
26061425 GTATGTATGTATATATAT
1 ATATATATATATATGTAT
* * *
26061443 GTATGTATATATATGTGT
1 ATATATATATATATGTAT
* *
26061461 ATATGTGTATATATGTAT
1 ATATATATATATATGTAT
* *
26061479 ATATATGTATATATATAT
1 ATATATATATATATGTAT
* *
26061497 GTATGTATATATATG--T
1 ATATATATATATATGTAT
*
26061513 ATATATGTATATATGTAT
1 ATATATATATATATGTAT
* * *
26061531 ATATATGTATGTATATAT
1 ATATATATATATATGTAT
*
26061549 AT-TATGTATATATGTAT
1 ATATATATATATATGTAT
*
26061566 ATATGTATATATATGTAT
1 ATATATATATATATGTAT
*
26061584 GTATATATAT-TATGTAT
1 ATATATATATATATGTAT
* *
26061601 ATATGTATATATATATAT
1 ATATATATATATATGTAT
* **
26061619 GCATGTATATATGCATATACAT
1 --ATATATATAT--ATATGTAT
* * *
26061641 ATATGTATACATATGTGT
1 ATATATATATATATGTAT
*
26061659 ATATACATATATATGTAT
1 ATATATATATATATGTAT
26061677 A-A-ATATATATATGTACAT
1 ATATATATATATATGT--AT
26061695 ATATATATGTATATATGTAT
1 ATATATA--TATATATGTAT
26061715 AATAATATATATATATGTA-
1 -AT-ATATATATATATGTAT
* *
26061734 ATATATATAT-T-TATAC
1 ATATATATATATATGTAT
* ** *
26061750 ATATATATGTATATACAC
1 ATATATATATATATGTAT
* * *
26061768 ATATGTAT-TCGTATGTGT
1 ATATATATAT-ATATGTAT
*** *
26061786 ATATATATATATACACAC
1 ATATATATATATATGTAT
* * *
26061804 ATATATATTTATATATAC
1 ATATATATATATATGTAT
* *
26061822 ACATATATATGTATGTAT
1 ATATATATATATATGTAT
*
26061840 ATATATGTATATATG--T
1 ATATATATATATATGTAT
* *
26061856 ATATATGTGTATATGTAT
1 ATATATATATATATGTAT
* *
26061874 ATATATGTATATATGTGT
1 ATATATATATATATGTAT
* * *
26061892 ATATCTATGTATATTTAT
1 ATATATATATATATGTAT
* * * *
26061910 GTATATATGTGTATGTGT
1 ATATATATATATATGTAT
**
26061928 ATATATATATGCATGTAT
1 ATATATATATATATGTAT
26061946 ATATGCATATACATATATGTAT
1 ATAT--ATAT--ATATATGTAT
*
26061968 ATGCATATATAGATATGTAT
1 AT--ATATATATATATGTAT
* * * *
26061988 ATGTACATATATGTATAT
1 ATATATATATATATGTAT
* * * * **
26062006 ATGTGTTTATACACATAT
1 ATATATATATATATGTAT
*
26062024 ATGTATATATATATGTCAT
1 ATATATATATATATGT-AT
* *
26062043 ATACATATACACATATGTAT
1 AT--ATATATATATATGTAT
* *
26062063 ATATATGTATGTATATGCAAAT
1 ATATA--TATATATATG--TAT
*
26062085 ATATATAAAATATATGTAT
1 ATATAT-ATATATATGTAT
* * * *
26062104 GTATACATATATGTGTGT
1 ATATATATATATATGTAT
26062122 ATATA
1 ATATA
26062127 CATCTATCTG
Statistics
Matches: 1496, Mismatches: 415, Indels: 176
0.72 0.20 0.08
Matches are distributed among these distances:
15 3 0.00
16 123 0.08
17 56 0.04
18 960 0.64
19 17 0.01
20 256 0.17
21 20 0.01
22 57 0.04
24 4 0.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.46
Consensus pattern (18 bp):
ATATATATATATATGTAT
Found at i:26061961 original size:12 final size:12
Alignment explanation
Indices: 26061928--26061961 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26061918 GTGTATGTGT
26061928 ATATATATATGC
1 ATATATATATGC
*
26061940 ATGTATATATGC
1 ATATATATATGC
*
26061952 ATATACATAT
1 ATATATATAT
26061962 ATGTATATGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (12 bp):
ATATATATATGC
Found at i:26062066 original size:35 final size:34
Alignment explanation
Indices: 26062013--26062078 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 34
26062003 TATATGTGTT
*
26062013 TATACACATATATGTATATATATATGTCATATACA
1 TATACACATATATATATATATATATGT-ATATACA
* *
26062048 TATACACATATGTATATATATGTATGTATAT
1 TATACACATATATATATATATATATGTATAT
26062079 GCAAATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 4 0.14
35 24 0.86
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (34 bp):
TATACACATATATATATATATATATGTATATACA
Found at i:26062193 original size:12 final size:12
Alignment explanation
Indices: 26062170--26062251 Score: 74
Period size: 12 Copynumber: 6.5 Consensus size: 12
26062160 ACATATAAAC
*
26062170 ACATACATATAT
1 ACATATATATAT
26062182 ACATATACATATAT
1 ACATAT--ATATAT
* * *
26062196 AGATAGATATGT
1 ACATATATATAT
26062208 ACATATATATAGTT
1 ACATATATATA--T
26062222 ACATATATATAT
1 ACATATATATAT
**
26062234 TTATATATATAT
1 ACATATATATAT
26062246 ACATAT
1 ACATAT
26062252 GATTTGAAGT
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
12 33 0.60
14 22 0.40
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (12 bp):
ACATATATATAT
Found at i:26062195 original size:14 final size:14
Alignment explanation
Indices: 26062159--26062196 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
26062149 CACACGTATG
*
26062159 TACATATAAACACA
1 TACATATATACACA
*
26062173 TACATATATACATA
1 TACATATATACACA
26062187 TACATATATA
1 TACATATATA
26062197 GATAGATATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.32
Consensus pattern (14 bp):
TACATATATACACA
Found at i:26062226 original size:14 final size:14
Alignment explanation
Indices: 26062207--26062246 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
26062197 GATAGATATG
26062207 TACATATATATAGT
1 TACATATATATAGT
*
26062221 TACATATATATATT
1 TACATATATATAGT
*
26062235 TATATATATATA
1 TACATATATATA
26062247 CATATGATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.47
Consensus pattern (14 bp):
TACATATATATAGT
Found at i:26062679 original size:15 final size:15
Alignment explanation
Indices: 26062659--26062688 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26062649 ATAGTTTGTT
*
26062659 TCATTTTATTTTTTA
1 TCATTTTATATTTTA
26062674 TCATTTTATATTTTA
1 TCATTTTATATTTTA
26062689 AGGTTTTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.00, T:0.70
Consensus pattern (15 bp):
TCATTTTATATTTTA
Found at i:26062695 original size:24 final size:24
Alignment explanation
Indices: 26062668--26062728 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 24
26062658 TTCATTTTAT
26062668 TTTTTATCATTTTATATTTTAAGG
1 TTTTTATCATTTTATATTTTAAGG
* * *
26062692 -TTTTATCTCTTTTTTATTTTAAGT
1 TTTTTATC-ATTTTATATTTTAAGG
*
26062716 TTTTTATTATTTT
1 TTTTTATCATTTT
26062729 CATTTATTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
23 7 0.23
24 17 0.57
25 6 0.20
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (24 bp):
TTTTTATCATTTTATATTTTAAGG
Found at i:26062733 original size:23 final size:23
Alignment explanation
Indices: 26062657--26062733 Score: 63
Period size: 22 Copynumber: 3.3 Consensus size: 23
26062647 TTATAGTTTG
*
26062657 TTTCATTTT-A-TTTTTTATCAT
1 TTTCATTTTAAGTTTTTTATTAT
* *
26062678 TTTATATTTTAAGGTTTTATCTCTT-T
1 TTT-CATTTTAA-GTTTT-T-TATTAT
26062704 TTT-ATTTTAAGTTTTTTATTAT
1 TTTCATTTTAAGTTTTTTATTAT
26062726 TTTCATTT
1 TTTCATTT
26062734 ATTTATGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 14
0.71 0.06 0.23
Matches are distributed among these distances:
21 6 0.14
22 10 0.23
23 10 0.23
24 7 0.16
25 4 0.09
26 5 0.11
27 2 0.05
ACGTcount: A:0.19, C:0.06, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTCATTTTAAGTTTTTTATTAT
Found at i:26066608 original size:11 final size:11
Alignment explanation
Indices: 26066595--26066640 Score: 58
Period size: 11 Copynumber: 4.1 Consensus size: 11
26066585 AAAATAATGG
26066595 AAAAAAAA-AA
1 AAAAAAAAGAA
*
26066605 GAAAAAAAGAA
1 AAAAAAAAGAA
26066616 AAAAAAAAGAA
1 AAAAAAAAGAA
26066627 AAATGAAAAAGAA
1 AAA--AAAAAGAA
26066640 A
1 A
26066641 TTGATGGTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 7 0.23
11 15 0.48
13 9 0.29
ACGTcount: A:0.87, C:0.00, G:0.11, T:0.02
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:26066611 original size:8 final size:8
Alignment explanation
Indices: 26066598--26066636 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
26066588 ATAATGGAAA
26066598 AAAAAAAG
1 AAAAAAAG
26066606 AAAAAAAG
1 AAAAAAAG
*
26066614 AAAAAAAA
1 AAAAAAAG
26066622 AAGAAAAATG
1 AA-AAAAA-G
26066632 AAAAA
1 AAAAA
26066637 GAAATTGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
8 17 0.63
9 8 0.30
10 2 0.07
ACGTcount: A:0.87, C:0.00, G:0.10, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:26066636 original size:19 final size:19
Alignment explanation
Indices: 26066590--26066636 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
26066580 CTTAAAAAAT
*
26066590 AATGGAAAAAAAAAAGAAA
1 AATGAAAAAAAAAAAGAAA
*
26066609 AA-AAGAAAAAAAAAAGAAA
1 AATGA-AAAAAAAAAAGAAA
26066628 AATGAAAAA
1 AATGAAAAA
26066637 GAAATTGATG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 22 0.96
20 1 0.04
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (19 bp):
AATGAAAAAAAAAAAGAAA
Found at i:26066954 original size:26 final size:25
Alignment explanation
Indices: 26066925--26066980 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
26066915 AAGAGGTGTG
26066925 CAAAAACAT-AAAAAAAATAAAACAAA
1 CAAAAA-ATGAAAAAAAATAAAA-AAA
*
26066951 CAAAAAGTGAAAAAAAATAAAAAAA
1 CAAAAAATGAAAAAAAATAAAAAAA
*
26066976 GAAAA
1 CAAAA
26066981 GAAAAAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 8 0.30
26 19 0.70
ACGTcount: A:0.80, C:0.07, G:0.05, T:0.07
Consensus pattern (25 bp):
CAAAAAATGAAAAAAAATAAAAAAA
Found at i:26066979 original size:17 final size:17
Alignment explanation
Indices: 26066926--26066994 Score: 52
Period size: 17 Copynumber: 4.0 Consensus size: 17
26066916 AGAGGTGTGC
*
26066926 AAAAACATAAAAAAA-A
1 AAAAAAATAAAAAAAGA
* **
26066942 TAAAACAAACAAAAAGTGA
1 -AAAA-AAATAAAAAAAGA
26066961 AAAAAAATAAAAAAAGA
1 AAAAAAATAAAAAAAGA
*
26066978 AAAGAAAA-AAAGAAAGA
1 AAA-AAAATAAAAAAAGA
26066995 CTTAATCTAA
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
17 25 0.61
18 15 0.37
19 1 0.02
ACGTcount: A:0.81, C:0.04, G:0.09, T:0.06
Consensus pattern (17 bp):
AAAAAAATAAAAAAAGA
Done.