Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 19 of 133
Found at i:4590819 original size:49 final size:49
Alignment explanation
Indices: 4590747--4590925 Score: 252
Period size: 49 Copynumber: 3.6 Consensus size: 49
4590737 CTTTAAAATC
4590747 CTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTT
1 CTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTT
* * * *
4590796 CTCTAAGTAAAGGCTCAATAACTTTAAAATTTTCATCTTGAAAAAGCTC
1 CTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTT
* * *
4590845 CTCTAAGCAGAGGCTCAATAACATTAAAATTCTCATCTTAGAAAAGC-T
1 CTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTT
* *
4590893 CATCTAAGTAGAGGCTCAATAAATTTTAAAATT
1 C-TCTAAGCAGAGGCTCAAT-AACTTTAAAATT
4590926 AAACTATTGA
Statistics
Matches: 114, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
48 1 0.01
49 103 0.90
50 10 0.09
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (49 bp):
CTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTT
Found at i:4590858 original size:129 final size:126
Alignment explanation
Indices: 4590619--4590874 Score: 395
Period size: 129 Copynumber: 2.0 Consensus size: 126
4590609 TTGAAAAAGC
*
4590619 TCCTCTAAACAAAGGCTTAATAACTTTAAAATCTATCTTGAAAAAACTCCTCTAAGCAAAGGCTC
1 TCCTCTAAACAAAGGCTCAATAACTTTAAAATCTATCTTGAAAAAACTCCTCTAAGCAAAGGCTC
*
4590684 AATAACTTTAAAAATTTATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAATAACTTTAAAA
66 AATAACTTTAAAAATTTATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAATAACATTAAAA
* * * * * * *
4590745 TCCTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTTCTCTAAGTAAAGGC
1 TCCTCTAAACAAAGGCTCAATAACTTTAAAA-TCT-ATCTTGAAAAAACTCCTCTAAGCAAAGGC
*
4590810 TCAATAACTTTAAAATTTTCATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAATAACATTAAAA
64 TCAATAACTTTAAAAATTT-ATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAATAACATTAAAA
4590874 T
1 T
4590875 TCTCATCTTA
Statistics
Matches: 117, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
126 28 0.24
127 2 0.02
128 43 0.37
129 44 0.38
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.30
Consensus pattern (126 bp):
TCCTCTAAACAAAGGCTCAATAACTTTAAAATCTATCTTGAAAAAACTCCTCTAAGCAAAGGCTC
AATAACTTTAAAAATTTATCTTGAAAAAGCTCCTCTAAGCAGAGGCTCAATAACATTAAAA
Found at i:4590914 original size:98 final size:99
Alignment explanation
Indices: 4590745--4590925 Score: 294
Period size: 98 Copynumber: 1.8 Consensus size: 99
4590735 AACTTTAAAA
* * *
4590745 TCCTCTAAGCAGAGGCTCAATAACTTTAAAATTTTCATCTTGGAAAAGCTTCTCTAAGTAAAGGC
1 TCCTCTAAGCAGAGGCTCAATAACATTAAAATTCTCATCTTAGAAAAGCTTCTCTAAGTAAAGGC
4590810 TCAAT-AACTTTAAAATTTTCATCTTGAAAAAGC
66 TCAATAAACTTTAAAATTTTCATCTTGAAAAAGC
*
4590843 TCCTCTAAGCAGAGGCTCAATAACATTAAAATTCTCATCTTAGAAAAGC-TCATCTAAGTAGAGG
1 TCCTCTAAGCAGAGGCTCAATAACATTAAAATTCTCATCTTAGAAAAGCTTC-TCTAAGTAAAGG
*
4590907 CTCAATAAATTTTAAAATT
65 CTCAATAAACTTTAAAATT
4590926 AAACTATTGA
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
97 2 0.03
98 63 0.83
99 11 0.14
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.31
Consensus pattern (99 bp):
TCCTCTAAGCAGAGGCTCAATAACATTAAAATTCTCATCTTAGAAAAGCTTCTCTAAGTAAAGGC
TCAATAAACTTTAAAATTTTCATCTTGAAAAAGC
Found at i:4591233 original size:75 final size:75
Alignment explanation
Indices: 4591109--4591470 Score: 368
Period size: 75 Copynumber: 4.8 Consensus size: 75
4591099 CAAAAGAAAC
* * * *
4591109 TTGGATATCATCATTAAGAAAATATAATTCAAGCTTTAACACTCGGATATCACCACCGAGAATAT
1 TTGGATATCATCACTAAGAAAATGTAATTCAAACTTTGACACTCGGATATCACCACCGAGAATAT
4591174 GCAAATGACT
66 GCAAATGACT
* * * **
4591184 TTGGATATCGTCACTAAGAAAATGTAATTCAAAATTTGACACTCAGATATCACCACTAAGAATAT
1 TTGGATATCATCACTAAGAAAATGTAATTCAAACTTTGACACTCGGATATCACCACCGAGAATAT
*
4591249 GCAAACGACT
66 GCAAATGACT
* * * * * *
4591259 TCGGATATCACCA-TCGAGAAAATGCAATTCAAACTTTGGCACTCGCATATCACCACCGAGAATA
1 TTGGATATCATCACT-AAGAAAATGTAATTCAAACTTTGACACTCGGATATCACCACCGAGAATA
*
4591323 TGTAAATGACT
65 TGCAAATGACT
* *** * * * ** * *
4591334 TTAGATATTGCCATCGAA-AAAATGCAATTCAAACCTTGACACTCGGATATCACCACTAAAAAAA
1 TTGGATATCATCA-CTAAGAAAATGTAATTCAAACTTTGACACTCGGATATCACCACCGAGAATA
*
4591398 GGCAAATGACT
65 TGCAAATGACT
* * * ** * *
4591409 TCGGATATCATCAATGAGAAAACATAATTCAAACCTTAACACTCGGATATCACCACCGAGAA
1 TTGGATATCATCACTAAGAAAATGTAATTCAAACTTTGACACTCGGATATCACCACCGAGAA
4591471 AACATAATTC
Statistics
Matches: 230, Mismatches: 53, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
74 2 0.01
75 227 0.99
76 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (75 bp):
TTGGATATCATCACTAAGAAAATGTAATTCAAACTTTGACACTCGGATATCACCACCGAGAATAT
GCAAATGACT
Found at i:4591383 original size:150 final size:149
Alignment explanation
Indices: 4591107--4591470 Score: 462
Period size: 150 Copynumber: 2.4 Consensus size: 149
4591097 ACCAAAAGAA
* * *
4591107 ACTT-GGATATCATCATTAAGAAAATATAATTCAAGCTTTAACACTCGGATATCACCACCGAGAA
1 ACTTCGGATATCACCA-TGAGAAAATATAATTCAAACTTTAACACTCGGATATCACCACCGAGAA
* * * * *
4591171 TATGCAAATGACTTTGGATATCGTCACTAAGAAAATGTAATTCAAAATTTGACACTCAGATATCA
65 TATGCAAATGACTTTAGATATCGCCACGAAGAAAATGCAATTCAAAACTTGACACTCAGATATCA
* * *
4591236 CCACTAAGAATATGCAAACG
130 CCACTAAAAAAAGGCAAACG
** ** *
4591256 ACTTCGGATATCACCATCGAGAAAATGCAATTCAAACTTTGGCACTCGCATATCACCACCGAGAA
1 ACTTCGGATATCACCAT-GAGAAAATATAATTCAAACTTTAACACTCGGATATCACCACCGAGAA
* * * *
4591321 TATGTAAATGACTTTAGATATTGCCATCGAA-AAAATGCAATTCAAACCTTGACACTCGGATATC
65 TATGCAAATGACTTTAGATATCGCCA-CGAAGAAAATGCAATTCAAAACTTGACACTCAGATATC
*
4591385 ACCACTAAAAAAAGGCAAATG
129 ACCACTAAAAAAAGGCAAACG
* * *
4591406 ACTTCGGATATCATCAATGAGAAAACATAATTCAAACCTTAACACTCGGATATCACCACCGAGAA
1 ACTTCGGATATCA-CCATGAGAAAATATAATTCAAACTTTAACACTCGGATATCACCACCGAGAA
4591471 AACATAATTC
Statistics
Matches: 182, Mismatches: 29, Indels: 7
0.83 0.13 0.03
Matches are distributed among these distances:
149 5 0.03
150 171 0.94
151 6 0.03
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.24
Consensus pattern (149 bp):
ACTTCGGATATCACCATGAGAAAATATAATTCAAACTTTAACACTCGGATATCACCACCGAGAAT
ATGCAAATGACTTTAGATATCGCCACGAAGAAAATGCAATTCAAAACTTGACACTCAGATATCAC
CACTAAAAAAAGGCAAACG
Found at i:4591396 original size:42 final size:40
Alignment explanation
Indices: 4591350--4591581 Score: 123
Period size: 42 Copynumber: 6.0 Consensus size: 40
4591340 ATTGCCATCG
4591350 AAAAAATGCAATTCAAACCTTGACACTCGGATATCACCACT-
1 AAAAAAT--AATTCAAACCTTGACACTCGGATATCACCACTA
** * * *
4591391 -AAAAA-AAGGCAAA---TGAC-TTCGGATATCATCAATGA
1 AAAAAATAATTCAAACCTTGACACTCGGATATCACCACT-A
* * *
4591426 GAAAACATAATTCAAACCTTAACACTCGGATATCACCACCGA
1 -AAAAAATAATTCAAACCTTGACACTCGGATATCACCA-CTA
* *
4591468 GAAAACATAATTCAAACCTTGATACTCGGATATCACCAC--
1 -AAAAAATAATTCAAACCTTGACACTCGGATATCACCACTA
* * ** * * **
4591507 CAAGAAT-AGGCAAA---TGAC-TTTGGATATCACCACCG
1 AAAAAATAATTCAAACCTTGACACTCGGATATCACCACTA
*
4591542 AAAAAATGCAATTCAAACCTTGACACTCGAATATCACCAC
1 AAAAAAT--AATTCAAACCTTGACACTCGGATATCACCAC
4591582 CGAAAAAAGG
Statistics
Matches: 142, Mismatches: 30, Indels: 37
0.68 0.14 0.18
Matches are distributed among these distances:
33 26 0.18
34 7 0.05
35 5 0.04
37 15 0.11
38 15 0.11
40 5 0.04
41 8 0.06
42 61 0.43
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.21
Consensus pattern (40 bp):
AAAAAATAATTCAAACCTTGACACTCGGATATCACCACTA
Found at i:4591495 original size:117 final size:116
Alignment explanation
Indices: 4591359--4591589 Score: 329
Period size: 117 Copynumber: 2.0 Consensus size: 116
4591349 GAAAAAATGC
* * *
4591359 AATTCAAACCTTGACACTCGGATATCACCACTAAAAAAAGGCAAATGACTTCGGATATCATCAAT
1 AATTCAAACCTTGACACTCGGATATCACCACCAAAAAAAGGCAAATGACTTCGGATATCACCAAC
* *
4591424 GAGAAAACAT-AATTCAAACCTTAACACTCGGATATCACCACCGAGAAAACAT
66 GA-AAAA-ATCAATTCAAACCTTAACACTCGAATATCACCACCGAAAAAACAT
* * * * *
4591476 AATTCAAACCTTGATACTCGGATATCACCACCAAGAATAGGCAAATGACTTTGGATATCACCACC
1 AATTCAAACCTTGACACTCGGATATCACCACCAAAAAAAGGCAAATGACTTCGGATATCACCAAC
*
4591541 GAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCACCGAAAAAA
66 GAAAAAAT-CAATTCAAACCTTAACACTCGAATATCACCACCGAAAAAA
4591590 GGTAAATGAT
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
115 2 0.02
116 4 0.04
117 95 0.94
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.20
Consensus pattern (116 bp):
AATTCAAACCTTGACACTCGGATATCACCACCAAAAAAAGGCAAATGACTTCGGATATCACCAAC
GAAAAAATCAATTCAAACCTTAACACTCGAATATCACCACCGAAAAAACAT
Found at i:4591524 original size:192 final size:192
Alignment explanation
Indices: 4591259--4591664 Score: 537
Period size: 192 Copynumber: 2.1 Consensus size: 192
4591249 GCAAACGACT
* ** * * * *
4591259 TCGGATATCACCATCGAGAAAATGCAATTCAAACTTTGGCACTCGCATATCACCACCGAGAATAT
1 TCGGATATCACCACCGAGAAAACACAATTCAAACCTTGACACTCGCATATCACCACCAAGAATAG
* ** * *
4591324 GTAAATGACTTTAGATATTGCCATCGAAAAAATGCAATTCAAACCTTGACACTCGGATATCACCA
66 GCAAATGACTTTAGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCA
* *
4591389 CTAAAAAAAGGCAAATGACTTCGGATATCA-TCAAT-GAGAAAACATAATTCAAACCTTAACAC
131 CCAAAAAAAGGCAAATGACTTCGGATAT-AGTC-ATCGAGAAAACACAATTCAAACCTTAACAC
* * *
4591451 TCGGATATCACCACCGAGAAAACATAATTCAAACCTTGATACTCGGATATCACCACCAAGAATAG
1 TCGGATATCACCACCGAGAAAACACAATTCAAACCTTGACACTCGCATATCACCACCAAGAATAG
*
4591516 GCAAATGACTTTGGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCA
66 GCAAATGACTTTAGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCA
* * * ** * *
4591581 CCGAAAAAAGGTAAATGATTTCGGATATAGTCATCGAGAAAATGCAATTCAAATCTTGACAC
131 CCAAAAAAAGGCAAATGACTTCGGATATAGTCATCGAGAAAACACAATTCAAACCTTAACAC
* *
4591643 TCAGATATCACCACCGAAAAAA
1 TCGGATATCACCACCGAGAAAA
4591665 GGCAAATGAC
Statistics
Matches: 185, Mismatches: 27, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
191 3 0.02
192 182 0.98
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (192 bp):
TCGGATATCACCACCGAGAAAACACAATTCAAACCTTGACACTCGCATATCACCACCAAGAATAG
GCAAATGACTTTAGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCA
CCAAAAAAAGGCAAATGACTTCGGATATAGTCATCGAGAAAACACAATTCAAACCTTAACAC
Found at i:4591535 original size:75 final size:75
Alignment explanation
Indices: 4591453--4591731 Score: 348
Period size: 75 Copynumber: 3.7 Consensus size: 75
4591443 CTTAACACTC
* * * *
4591453 GGATATCACCACCGAGAAAACATAATTCAAACCTTGATACTCGGATATCACCACC-AAGAATAGG
1 GGATATCACCACCGAGAAAATACAATTCAAACCTTGACACTCGGATATCACCACCGAA-AAAAGG
4591517 CAAATGACTTT
65 CAAATGACTTT
* * * *
4591528 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCACCGAAAAAAGGT
1 GGATATCACCACCGAGAAAATACAATTCAAACCTTGACACTCGGATATCACCACCGAAAAAAGGC
4591593 AAATGA-TTT
66 AAATGACTTT
* * * * *
4591602 CGGATAT-AGTCATCGAGAAAATGCAATTCAAATCTTGACACTCAGATATCACCACCGAAAAAAG
1 -GGATATCA-CCACCGAGAAAATACAATTCAAACCTTGACACTCGGATATCACCACCGAAAAAAG
*
4591666 GCAAATGACTTC
64 GCAAATGACTTT
** * *
4591678 GGATATTGCTACCGAGAAAATGCAATTCAAACCTTGACACTCGGATATCACCAC
1 GGATATCACCACCGAGAAAATACAATTCAAACCTTGACACTCGGATATCACCAC
4591732 TGAGAAAATA
Statistics
Matches: 177, Mismatches: 22, Indels: 10
0.85 0.11 0.05
Matches are distributed among these distances:
74 4 0.02
75 169 0.95
76 4 0.02
ACGTcount: A:0.40, C:0.24, G:0.15, T:0.21
Consensus pattern (75 bp):
GGATATCACCACCGAGAAAATACAATTCAAACCTTGACACTCGGATATCACCACCGAAAAAAGGC
AAATGACTTT
Found at i:4591589 original size:42 final size:42
Alignment explanation
Indices: 4591528--4591854 Score: 219
Period size: 42 Copynumber: 8.2 Consensus size: 42
4591518 AAATGACTTT
4591528 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
1 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
* * **
4591570 GAATATCACCACCGAAAAAA-G---GT-AAA---TGA-TTTC
1 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
* * * *
4591603 GGATAT-AGTCATCGAGAAAATGCAATTCAAATCTTGACACTC
1 GGATATCA-CCACCGAAAAAATGCAATTCAAACCTTGACACTC
* * *
4591645 AGATATCACCACCGAAAAAA-G----GCAAA---TGAC-TTC
1 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
** * *
4591678 GGATATTGCTACCGAGAAAATGCAATTCAAACCTTGACACTC
1 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
* * ** *
4591720 GGATATCACCACTGAGAAAATATAATTCAAACCTTGATACTC
1 GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
* * * * * * *
4591762 GGATATCACCACTGAGAATATGTAAAT-AATACTTTGATACTC
1 GGATATCACCACCGAAAAAATGCAATTCAA-ACCTTGACACTC
* *
4591804 GGATATCACCA-CTAAGAAAATGTAATTCAAACCTTGACACTC
1 GGATATCACCACCGAA-AAAATGCAATTCAAACCTTGACACTC
4591846 GGATATCAC
1 GGATATCAC
4591855 AATCGAGAAA
Statistics
Matches: 220, Mismatches: 42, Indels: 46
0.71 0.14 0.15
Matches are distributed among these distances:
32 1 0.00
33 33 0.15
34 9 0.04
37 8 0.04
38 8 0.04
41 12 0.05
42 146 0.66
43 3 0.01
ACGTcount: A:0.40, C:0.22, G:0.14, T:0.24
Consensus pattern (42 bp):
GGATATCACCACCGAAAAAATGCAATTCAAACCTTGACACTC
Found at i:4591597 original size:267 final size:267
Alignment explanation
Indices: 4591208--4591773 Score: 796
Period size: 267 Copynumber: 2.1 Consensus size: 267
4591198 TAAGAAAATG
** * * * * *
4591208 TAATTCAAAATTTGACACTCAGATATCACCACTAAGAATATGCAAACGACTTCGGATATCACCAT
1 TAATTCAAACCTTGATACTCGGATATCACCACCAAGAATAGGCAAACGACTTCGGATATCACCAC
* * * * * * *
4591273 CGAGAAAATGCAATTCAAACTTTGGCACTCGCATATCACCACCGAGAATATGTAAATGACTTT-A
66 CGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCACCGAAAAAAGGTAAATGA-TTTCA
* * *
4591337 GATATTGCCATCGAAAAAATGCAATTCAAACCTTGACACTCGGATATCACCACTAAAAAAAGGCA
130 GATATAGCCATCGAAAAAATGCAATTCAAACCTTGACACTCAGATATCACCACCAAAAAAAGGCA
* *
4591402 AATGACTTCGGATA-T-CATCAATGAGAAAACATAATTCAAACCTTAACACTCGGATATCACCAC
195 AATGACTTCGGATATTGC-T-AACGAGAAAACACAATTCAAACCTTAACACTCGGATATCACCAC
4591465 CGAGAAAACA
258 CGAGAAAACA
* *
4591475 TAATTCAAACCTTGATACTCGGATATCACCACCAAGAATAGGCAAATGACTTTGGATATCACCAC
1 TAATTCAAACCTTGATACTCGGATATCACCACCAAGAATAGGCAAACGACTTCGGATATCACCAC
*
4591540 CGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCACCGAAAAAAGGTAAATGATTTCGG
66 CGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCACCGAAAAAAGGTAAATGATTTCAG
* * * *
4591605 ATATAGTCATCGAGAAAATGCAATTCAAATCTTGACACTCAGATATCACCACCGAAAAAAGGCAA
131 ATATAGCCATCGAAAAAATGCAATTCAAACCTTGACACTCAGATATCACCACCAAAAAAAGGCAA
* ** * *
4591670 ATGACTTCGGATATTGCTACCGAGAAAATGCAATTCAAACCTTGACACTCGGATATCACCACTGA
196 ATGACTTCGGATATTGCTAACGAGAAAACACAATTCAAACCTTAACACTCGGATATCACCACCGA
*
4591735 GAAAATA
261 GAAAACA
4591742 TAATTCAAACCTTGATACTCGGATATCACCAC
1 TAATTCAAACCTTGATACTCGGATATCACCAC
4591774 TGAGAATATG
Statistics
Matches: 264, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
266 3 0.01
267 258 0.98
268 2 0.01
269 1 0.00
ACGTcount: A:0.40, C:0.23, G:0.14, T:0.23
Consensus pattern (267 bp):
TAATTCAAACCTTGATACTCGGATATCACCACCAAGAATAGGCAAACGACTTCGGATATCACCAC
CGAAAAAATGCAATTCAAACCTTGACACTCGAATATCACCACCGAAAAAAGGTAAATGATTTCAG
ATATAGCCATCGAAAAAATGCAATTCAAACCTTGACACTCAGATATCACCACCAAAAAAAGGCAA
ATGACTTCGGATATTGCTAACGAGAAAACACAATTCAAACCTTAACACTCGGATATCACCACCGA
GAAAACA
Found at i:4591866 original size:42 final size:42
Alignment explanation
Indices: 4591691--4591854 Score: 240
Period size: 42 Copynumber: 3.9 Consensus size: 42
4591681 TATTGCTACC
*
4591691 GAGAAAATGCAATTCAAACCTTGACACTCGGATATCACCACT
1 GAGAAAATGTAATTCAAACCTTGACACTCGGATATCACCACT
* *
4591733 GAGAAAATATAATTCAAACCTTGATACTCGGATATCACCACT
1 GAGAAAATGTAATTCAAACCTTGACACTCGGATATCACCACT
* * * *
4591775 GAGAATATGTAAAT-AATACTTTGATACTCGGATATCACCACT
1 GAGAAAATGTAATTCAA-ACCTTGACACTCGGATATCACCACT
*
4591817 AAGAAAATGTAATTCAAACCTTGACACTCGGATATCAC
1 GAGAAAATGTAATTCAAACCTTGACACTCGGATATCAC
4591855 AATCGAGAAA
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
41 2 0.02
42 104 0.96
43 2 0.02
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (42 bp):
GAGAAAATGTAATTCAAACCTTGACACTCGGATATCACCACT
Found at i:4593133 original size:17 final size:16
Alignment explanation
Indices: 4593108--4593146 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
4593098 ATAGCTTTAC
*
4593108 TTTTCATTTTTCTCTTT
1 TTTTTATTTTT-TCTTT
4593125 TTTTTATTTTTTCTTT
1 TTTTTATTTTTTCTTT
4593141 TTTTTA
1 TTTTTA
4593147 ACGATTTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTTATTTTTTCTTT
Found at i:4599390 original size:14 final size:15
Alignment explanation
Indices: 4599371--4599403 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
4599361 ACTGCCAGAA
*
4599371 AAAAATAAATA-AAT
1 AAAAATAAAAATAAT
4599385 AAAAATAAAAATAAT
1 AAAAATAAAAATAAT
4599400 AAAA
1 AAAA
4599404 TGGTGTCTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAAATAAAAATAAT
Found at i:4603230 original size:28 final size:28
Alignment explanation
Indices: 4603180--4603234 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
4603170 TATATTTATC
4603180 AATTATGAAAATTAAATACATAAAAATT
1 AATTATGAAAATTAAATACATAAAAATT
* *
4603208 AATTATTATAAATTACATA-ATAAAAAT
1 AATTATGA-AAATTAAATACATAAAAAT
4603235 GCATTTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (28 bp):
AATTATGAAAATTAAATACATAAAAATT
Found at i:4603317 original size:29 final size:29
Alignment explanation
Indices: 4603262--4603317 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
4603252 TATATGTGTT
*
4603262 TTAAAATATATTTATATTTTGTTTATATC
1 TTAAAATATATTTATATTTTGTGTATATC
* *
4603291 TTAACATATATTTTTATTTATG-GTATA
1 TTAAAATATATTTATATTT-TGTGTATA
4603318 AAAATATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 21 0.91
30 2 0.09
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (29 bp):
TTAAAATATATTTATATTTTGTGTATATC
Found at i:4605125 original size:2 final size:2
Alignment explanation
Indices: 4605114--4605144 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4605104 GATATTCATT
4605114 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4605145 ATTATTGACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:4620854 original size:2 final size:2
Alignment explanation
Indices: 4620847--4620876 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4620837 TGTAACAAGA
4620847 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4620877 CTGTAACCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4622390 original size:28 final size:28
Alignment explanation
Indices: 4622336--4622395 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
4622326 TGGTTTACTA
* *
4622336 AATGATATTATATGATATTATTTTGTTG
1 AATGATATTATATGATATTAGTATGTTG
* * *
4622364 AATGTTATTGTATGATATTGGTATGTTG
1 AATGATATTATATGATATTAGTATGTTG
4622392 AATG
1 AATG
4622396 GTTTGCTGAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (28 bp):
AATGATATTATATGATATTAGTATGTTG
Found at i:4622405 original size:12 final size:12
Alignment explanation
Indices: 4622390--4622483 Score: 64
Period size: 12 Copynumber: 7.7 Consensus size: 12
4622380 ATTGGTATGT
4622390 TGAATGGTTTGC
1 TGAATGGTTTGC
*
4622402 TGAATAGTTTGC
1 TGAATGGTTTGC
* *
4622414 TAAATGGTGTTTC
1 TGAATGGT-TTGC
*
4622427 TAAATGGTTTGC
1 TGAATGGTTTGC
4622439 TGAATTGTGTTT-C
1 TGAA-TG-GTTTGC
****
4622452 TGAACACATTGC
1 TGAATGGTTTGC
*
4622464 TGATTGGTTTGC
1 TGAATGGTTTGC
*
4622476 TAAATGGT
1 TGAATGGT
4622484 GTTTTTGTAC
Statistics
Matches: 61, Mismatches: 17, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
11 2 0.03
12 37 0.61
13 18 0.30
14 4 0.07
ACGTcount: A:0.22, C:0.10, G:0.26, T:0.43
Consensus pattern (12 bp):
TGAATGGTTTGC
Found at i:4626869 original size:63 final size:63
Alignment explanation
Indices: 4626802--4626934 Score: 155
Period size: 63 Copynumber: 2.1 Consensus size: 63
4626792 AGGCCTTCAA
*
4626802 TAATCACATA-C-ATTTTTTT-ATGAGGAGATTATTCAAGGCATTGTCTACCAAAAATACCTTTA
1 TAATCACATATCAATTTTTTTAAT--GG-GATTATTCAAGCCATTGTCTACCAAAAATACCTTTA
4626864 G
63 G
* * * * *
4626865 TAATCCCTTATCAATTTTTTTAATTGGATTATTCAAGCCATTTTCTACCAAAAATAGCTTTAG
1 TAATCACATATCAATTTTTTTAATGGGATTATTCAAGCCATTGTCTACCAAAAATACCTTTAG
*
4626928 TATTCAC
1 TAATCAC
4626935 TCAAATTTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 47 0.80
64 2 0.03
65 8 0.14
66 2 0.03
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (63 bp):
TAATCACATATCAATTTTTTTAATGGGATTATTCAAGCCATTGTCTACCAAAAATACCTTTAG
Found at i:4633470 original size:2 final size:2
Alignment explanation
Indices: 4633463--4633491 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
4633453 GGCTTGCCTC
4633463 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4633492 AAGAGAGAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4637130 original size:30 final size:28
Alignment explanation
Indices: 4637094--4637216 Score: 106
Period size: 30 Copynumber: 4.1 Consensus size: 28
4637084 AAAATAATAA
*
4637094 AAATTTTTAATTTTATAATTTTATGTAGAT
1 AAATTTTTAATTTT-TAATTTTAT-TAAAT
*
4637124 AAA-TTTTATATTTTT-ATTATATTTAAAT
1 AAATTTTTA-ATTTTTAATTTTA-TTAAAT
4637152 AAATTTTTAATTTTTAATTTATATTAAAAT
1 AAATTTTTAATTTTTAATTT-TATT-AAAT
* **
4637182 AAATTTTCAAAAATTTAATTTATATTTAAAT
1 AAATTTT-TAATTTTTAATTT-TA-TTAAAT
4637213 AAAT
1 AAAT
4637217 CTTATCATAT
Statistics
Matches: 79, Mismatches: 6, Indels: 15
0.79 0.06 0.15
Matches are distributed among these distances:
28 18 0.23
29 17 0.22
30 21 0.27
31 21 0.27
32 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (28 bp):
AAATTTTTAATTTTTAATTTTATTAAAT
Found at i:4637157 original size:58 final size:60
Alignment explanation
Indices: 4637094--4637216 Score: 155
Period size: 58 Copynumber: 2.1 Consensus size: 60
4637084 AAAATAATAA
* * * *
4637094 AAATTTTTAATTTTATAATTT-TATGT-AGATAAATTTT-ATATTTTTA-TTATATTTAAAT
1 AAATTTTTAATTTT-TAATTTATAT-TAAAATAAATTTTAAAAATTTAATTTATATTTAAAT
4637152 AAATTTTTAATTTTTAATTTATATTAAAATAAATTTTCAAAAATTTAATTTATATTTAAAT
1 AAATTTTTAATTTTTAATTTATATTAAAATAAATTTT-AAAAATTTAATTTATATTTAAAT
4637213 AAAT
1 AAAT
4637217 CTTATCATAT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
57 7 0.12
58 27 0.48
60 6 0.11
61 16 0.29
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (60 bp):
AAATTTTTAATTTTTAATTTATATTAAAATAAATTTTAAAAATTTAATTTATATTTAAAT
Found at i:4637202 original size:31 final size:30
Alignment explanation
Indices: 4637140--4637216 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 30
4637130 TATATTTTTA
* **
4637140 TTATATTTAAATAAATTTTTAATTTTTAAT
1 TTATATTTAAATAAATTTTAAAAATTTAAT
*
4637170 TTATATTAAAATAAATTTTCAAAAATTTAAT
1 TTATATTTAAATAAATTTT-AAAAATTTAAT
4637201 TTATATTTAAATAAAT
1 TTATATTTAAATAAAT
4637217 CTTATCATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
30 18 0.44
31 23 0.56
ACGTcount: A:0.47, C:0.01, G:0.00, T:0.52
Consensus pattern (30 bp):
TTATATTTAAATAAATTTTAAAAATTTAAT
Found at i:4639546 original size:36 final size:36
Alignment explanation
Indices: 4639499--4639571 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
4639489 CAATCCAGGA
*
4639499 TAGATTGGTTTTTTGTTATTGGAATGGTATACATGT
1 TAGATTGGTTTTTTGTAATTGGAATGGTATACATGT
4639535 TAGATTGGTTTTTTGTAATTGGAATGGTATACATGT
1 TAGATTGGTTTTTTGTAATTGGAATGGTATACATGT
4639571 T
1 T
4639572 TAGGATGAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.03, G:0.25, T:0.49
Consensus pattern (36 bp):
TAGATTGGTTTTTTGTAATTGGAATGGTATACATGT
Found at i:4640398 original size:80 final size:79
Alignment explanation
Indices: 4640265--4640426 Score: 297
Period size: 80 Copynumber: 2.0 Consensus size: 79
4640255 TTTATGTCGA
4640265 GTTCCAAGCTAGAGGCAAATTTAAAATCATAAAGGAAAGAAAATAGCAGTAAGAAGTCAAGGCAG
1 GTTCCAAGCTAGAGGCAAATTTAAAATCATAAAGGAAAGAAAATAGCAGTAAGAAGTCAAGGCAG
4640330 GGAATTTTTTTCTAT
66 GGAA-TTTTTTCTAT
* *
4640345 GTTCCAAGCTAGAGGCAAATTTAAAATCATAAAGGAAAGAAAATAGCAGTAAGAAGTTAAGGCGG
1 GTTCCAAGCTAGAGGCAAATTTAAAATCATAAAGGAAAGAAAATAGCAGTAAGAAGTCAAGGCAG
4640410 GGAATTTTTTCTAT
66 GGAATTTTTTCTAT
4640424 GTT
1 GTT
4640427 TGTATTCCGA
Statistics
Matches: 80, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
79 13 0.16
80 67 0.84
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.26
Consensus pattern (79 bp):
GTTCCAAGCTAGAGGCAAATTTAAAATCATAAAGGAAAGAAAATAGCAGTAAGAAGTCAAGGCAG
GGAATTTTTTCTAT
Found at i:4677217 original size:21 final size:21
Alignment explanation
Indices: 4677175--4677213 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
4677165 TATGTCTTTT
*
4677175 TTTTGTTATTTATAGTTTTCA
1 TTTTGTTATTTAAAGTTTTCA
4677196 TTTT-TTATTTAAAGTTTT
1 TTTTGTTATTTAAAGTTTT
4677214 TCATATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.21, C:0.03, G:0.08, T:0.69
Consensus pattern (21 bp):
TTTTGTTATTTAAAGTTTTCA
Found at i:4689380 original size:38 final size:38
Alignment explanation
Indices: 4689329--4689406 Score: 129
Period size: 38 Copynumber: 2.1 Consensus size: 38
4689319 AGAGCCAGTG
* *
4689329 TTGCTGTAAAACTAGGAAGGAGAATGAAGGATTTGTGA
1 TTGCTCTAAAACTAGGAAGGAGAATGAAGGATTTGGGA
*
4689367 TTGCTCTAAAACTAGGGAGGAGAATGAAGGATTTGGGA
1 TTGCTCTAAAACTAGGAAGGAGAATGAAGGATTTGGGA
4689405 TT
1 TT
4689407 TTAACCATAG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.35, C:0.06, G:0.32, T:0.27
Consensus pattern (38 bp):
TTGCTCTAAAACTAGGAAGGAGAATGAAGGATTTGGGA
Found at i:4689605 original size:24 final size:22
Alignment explanation
Indices: 4689568--4689613 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
4689558 ATTTGGATGA
*
4689568 TTATTTAATTCAAAATTAAATATT
1 TTATTTAATAC-AAA-TAAATATT
*
4689592 TTATTTTATACAAATAAATATT
1 TTATTTAATACAAATAAATATT
4689614 AAATACTATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 8 0.40
23 3 0.15
24 9 0.45
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (22 bp):
TTATTTAATACAAATAAATATT
Found at i:4697052 original size:85 final size:89
Alignment explanation
Indices: 4696872--4697090 Score: 295
Period size: 85 Copynumber: 2.4 Consensus size: 89
4696862 ATAAATTAAC
* *
4696872 CAATGAATTTATAAATTTTATAAACGAAAAAAAAAAAGTTCATAACGAATTTTTTTCAAAAATGT
1 CAATGAATTTATAAATTTTATAAAC---AAAAAAATA-TTCATAAC-AATTTTTTTCAAAAATGA
*
4696937 TCACTTATAATACATATATAAAAATTAGT
61 TCACTTATAATACATATATAAAAAGTAGT
4696966 CAATGAATTTATAAATTTTATAAACAAAAAAATATTCATAA-ATATTTTTTTCAAAAAT-ATCAC
1 CAATGAATTTATAAATTTTATAAACAAAAAAATATTCATAACA-ATTTTTTTCAAAAATGATCAC
*
4697029 TTA-AA-A-ATCTATAAAAAGTAGT
65 TTATAATACATATATAAAAAGTAGT
* *
4697051 CAATGAATTTATAAATTTTATAAAGAAAAAAATGTTCATA
1 CAATGAATTTATAAATTTTATAAACAAAAAAATATTCATA
4697091 TCAAAATTTT
Statistics
Matches: 118, Mismatches: 6, Indels: 11
0.87 0.04 0.08
Matches are distributed among these distances:
85 52 0.44
86 1 0.01
87 2 0.02
88 8 0.07
89 15 0.13
90 7 0.06
91 8 0.07
94 25 0.21
ACGTcount: A:0.51, C:0.08, G:0.05, T:0.36
Consensus pattern (89 bp):
CAATGAATTTATAAATTTTATAAACAAAAAAATATTCATAACAATTTTTTTCAAAAATGATCACT
TATAATACATATATAAAAAGTAGT
Found at i:4704881 original size:23 final size:22
Alignment explanation
Indices: 4704831--4704897 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 22
4704821 AAAATTTTAA
4704831 AAATACAAAAACTTTCA-AAAAATG
1 AAATA-AAAAA-TTT-ATAAAAATG
4704855 AAATAAAAAATTATACTAAAAAT-
1 AAATAAAAAATT-TA-TAAAAATG
* *
4704878 AAATTAAATATTTATAAAAA
1 AAATAAAAAATTTATAAAAA
4704898 ATCAAAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
21 6 0.16
22 5 0.13
23 16 0.42
24 11 0.29
ACGTcount: A:0.66, C:0.06, G:0.01, T:0.27
Consensus pattern (22 bp):
AAATAAAAAATTTATAAAAATG
Found at i:4704925 original size:45 final size:44
Alignment explanation
Indices: 4704871--4704973 Score: 108
Period size: 45 Copynumber: 2.4 Consensus size: 44
4704861 AAAATTATAC
4704871 TAAAAATAAATTAAATATTT-A-TAAAAAATCAAAATATTGA-TTTT
1 TAAAAATAAA-TAAA-ATTTGATTAAAAAATCAAAATA-TGACTTTT
** *
4704915 TAAAAGATAAATAAAATTTGATTTTAAAATGAAAATATGACTTTT
1 TAAAA-ATAAATAAAATTTGATTAAAAAATCAAAATATGACTTTT
4704960 T-AAAA-AAATAAAAT
1 TAAAAATAAATAAAAT
4704974 ATTTAATATA
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
42 9 0.17
43 5 0.10
44 16 0.31
45 22 0.42
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (44 bp):
TAAAAATAAATAAAATTTGATTAAAAAATCAAAATATGACTTTT
Found at i:4704943 original size:24 final size:26
Alignment explanation
Indices: 4704895--4704951 Score: 75
Period size: 24 Copynumber: 2.2 Consensus size: 26
4704885 ATATTTATAA
4704895 AAAATCAAAATATTGATTTTTAAAA-G
1 AAAAT-AAAATATTGATTTTTAAAATG
4704921 ATAAATAAAAT-TTGA-TTTTAAAATG
1 A-AAATAAAATATTGATTTTTAAAATG
4704946 AAAATA
1 AAAATA
4704952 TGACTTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
24 13 0.45
25 6 0.21
26 6 0.21
27 4 0.14
ACGTcount: A:0.56, C:0.02, G:0.07, T:0.35
Consensus pattern (26 bp):
AAAATAAAATATTGATTTTTAAAATG
Found at i:4705069 original size:16 final size:16
Alignment explanation
Indices: 4705050--4705080 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4705040 TTAAAAAGAT
*
4705050 AAAATTTTATTTTTAA
1 AAAATATTATTTTTAA
4705066 AAAATATTATTTTTA
1 AAAATATTATTTTTA
4705081 TTAATAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AAAATATTATTTTTAA
Found at i:4707362 original size:19 final size:19
Alignment explanation
Indices: 4707334--4707377 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
4707324 ATTTTTATTT
4707334 TATAAAAATT-TAAAAATA
1 TATAAAAATTATAAAAATA
4707352 TATATAAAATTAATAAAAATA
1 TATA-AAAATT-ATAAAAATA
4707373 TATAA
1 TATAA
4707378 TTCAATTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.17
19 6 0.26
20 1 0.04
21 12 0.52
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (19 bp):
TATAAAAATTATAAAAATA
Found at i:4712950 original size:16 final size:17
Alignment explanation
Indices: 4712918--4712951 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
4712908 TCAAATTTGA
4712918 TTTCATTATTGGGTTTT
1 TTTCATTATTGGGTTTT
*
4712935 TTTCATT-TTTGGTTTT
1 TTTCATTATTGGGTTTT
4712951 T
1 T
4712952 AATACTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.09, C:0.06, G:0.15, T:0.71
Consensus pattern (17 bp):
TTTCATTATTGGGTTTT
Found at i:4713100 original size:19 final size:20
Alignment explanation
Indices: 4713069--4713115 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
4713059 CTTTTTTTCC
4713069 TTTGTTTTACTTTTCCTTTT
1 TTTGTTTTACTTTTCCTTTT
*
4713089 TTTGTTTT-CTTTTTCTTTT
1 TTTGTTTTACTTTTCCTTTT
4713108 TTT-TTTTA
1 TTTGTTTTA
4713116 ATTTAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.16
19 13 0.52
20 8 0.32
ACGTcount: A:0.04, C:0.11, G:0.04, T:0.81
Consensus pattern (20 bp):
TTTGTTTTACTTTTCCTTTT
Found at i:4713101 original size:25 final size:24
Alignment explanation
Indices: 4713059--4713114 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
4713049 TTATACCAAA
*
4713059 CTTTTTTTCCTTTGTTTTACTTTT
1 CTTTTTTTCCTTTCTTTTACTTTT
** *
4713083 CCTTTTTTTGTTTTCTTTTTCTTTT
1 -CTTTTTTTCCTTTCTTTTACTTTT
4713108 -TTTTTTT
1 CTTTTTTT
4713115 AATTTAATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 7 0.26
25 20 0.74
ACGTcount: A:0.02, C:0.14, G:0.04, T:0.80
Consensus pattern (24 bp):
CTTTTTTTCCTTTCTTTTACTTTT
Found at i:4716926 original size:52 final size:50
Alignment explanation
Indices: 4716865--4716964 Score: 157
Period size: 52 Copynumber: 2.0 Consensus size: 50
4716855 AAAAGCATAT
4716865 TATAAGAGGAATAAATTCTAAAA-ATAAATAAATCTCTTATACATAAAAAAAC
1 TATAAGAGGAATAAATTCTAAAATA-AAATAAATCTC--ATACATAAAAAAAC
*
4716917 TATATGAGGAATAAATTCTAAAATAAAATAAATCTCATACATAAAAAA
1 TATAAGAGGAATAAATTCTAAAATAAAATAAATCTCATACATAAAAAA
4716965 GTATCATTCA
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
50 12 0.26
52 33 0.72
53 1 0.02
ACGTcount: A:0.58, C:0.09, G:0.06, T:0.27
Consensus pattern (50 bp):
TATAAGAGGAATAAATTCTAAAATAAAATAAATCTCATACATAAAAAAAC
Found at i:4719459 original size:12 final size:12
Alignment explanation
Indices: 4719442--4719469 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
4719432 ATGCCACGTA
4719442 TATTATTCCCAC
1 TATTATTCCCAC
4719454 TATTATTCCCAC
1 TATTATTCCCAC
4719466 TATT
1 TATT
4719470 GTGGTACGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (12 bp):
TATTATTCCCAC
Found at i:4720672 original size:21 final size:21
Alignment explanation
Indices: 4720638--4720689 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
4720628 TTATATTTTT
*
4720638 TAATA-TTTACATTTAAAAAA
1 TAATATTTTATATTTAAAAAA
4720658 TAATATTTTATATTTAAAAAA
1 TAATATTTTATATTTAAAAAA
4720679 TAATATTTTAT
1 TAATATTTTAT
4720690 TAATTTCGGG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 5 0.17
21 25 0.83
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
TAATATTTTATATTTAAAAAA
Found at i:4723406 original size:10 final size:10
Alignment explanation
Indices: 4723391--4723415 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
4723381 CCGGATAATG
4723391 AAGAAGAAAA
1 AAGAAGAAAA
4723401 AAGAAGAAAA
1 AAGAAGAAAA
4723411 AAGAA
1 AAGAA
4723416 ACAGAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (10 bp):
AAGAAGAAAA
Found at i:4725527 original size:21 final size:20
Alignment explanation
Indices: 4725487--4725526 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
4725477 CTTTACGTGA
*
4725487 TTTAAACATAATCATAAAAT
1 TTTAAACATAATAATAAAAT
4725507 TTTAATACATAATAAATAAA
1 TTTAA-ACATAAT-AATAAA
4725527 TAAATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 7 0.41
22 5 0.29
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (20 bp):
TTTAAACATAATAATAAAAT
Found at i:4727579 original size:40 final size:40
Alignment explanation
Indices: 4727535--4727617 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
4727525 CAATTCATAA
4727535 ATTTTAACTTTAT-CAAAGTCTAGTTTCTTACCTTTAGAAG
1 ATTTTAACTTT-TGCAAAGTCTAGTTTCTTACCTTTAGAAG
** * *
4727575 ATTTTTTCTTTTGCTAAGTCTAGTTTCTTACCTTTGGAAG
1 ATTTTAACTTTTGCAAAGTCTAGTTTCTTACCTTTAGAAG
4727615 ATT
1 ATT
4727618 GCCATGTTTC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.24, C:0.14, G:0.12, T:0.49
Consensus pattern (40 bp):
ATTTTAACTTTTGCAAAGTCTAGTTTCTTACCTTTAGAAG
Found at i:4729081 original size:2 final size:2
Alignment explanation
Indices: 4729074--4729103 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4729064 GTTAACAATT
4729074 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4729104 GGAATGTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:4733966 original size:5 final size:5
Alignment explanation
Indices: 4733956--4733987 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
4733946 GGGGCTGACC
*
4733956 AACCA AACCA AACCA AACCA AACTA AACCA AA
1 AACCA AACCA AACCA AACCA AACCA AACCA AA
4733988 GAGCATTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.62, C:0.34, G:0.00, T:0.03
Consensus pattern (5 bp):
AACCA
Found at i:4734513 original size:21 final size:21
Alignment explanation
Indices: 4734489--4734533 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
4734479 ACAAATGAAA
4734489 GGATTTGTACTGAAATAAGCT
1 GGATTTGTACTGAAATAAGCT
4734510 GGATTTGTACTGAAATAAGCT
1 GGATTTGTACTGAAATAAGCT
4734531 GGA
1 GGA
4734534 GATCGTGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.09, G:0.27, T:0.31
Consensus pattern (21 bp):
GGATTTGTACTGAAATAAGCT
Found at i:4736772 original size:43 final size:43
Alignment explanation
Indices: 4736710--4736802 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
4736700 TAATTTGTTA
* * * *
4736710 CATATTTCATGTCTTAAAAGGTGATATA-GGAGAAAGATATTCT
1 CATATTTAATGTATGAAAAGGTGATATAGGGA-AAAGATACTCT
*
4736753 CATATTTAATGTATGAAAAGGTGATATTGGGAAAAGATACTCT
1 CATATTTAATGTATGAAAAGGTGATATAGGGAAAAGATACTCT
4736796 CATATTT
1 CATATTT
4736803 CATTTATATT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 41 0.93
44 3 0.07
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (43 bp):
CATATTTAATGTATGAAAAGGTGATATAGGGAAAAGATACTCT
Found at i:4739749 original size:38 final size:38
Alignment explanation
Indices: 4739695--4739771 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
4739685 CCATGCTCTT
* *
4739695 TCTCTCTACTTATGCATATATACACAATCATTTTCTAC
1 TCTCTCTACTTATGCATACATACACAAGCATTTTCTAC
* **
4739733 TCTCTCTACTTGTGCATACATATGCAAGCATTTTCTAC
1 TCTCTCTACTTATGCATACATACACAAGCATTTTCTAC
4739771 T
1 T
4739772 GGAAGAACAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (38 bp):
TCTCTCTACTTATGCATACATACACAAGCATTTTCTAC
Found at i:4741178 original size:22 final size:22
Alignment explanation
Indices: 4741148--4741192 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
4741138 TCAGCAGCAA
*
4741148 TTTACGGTTGAAATCTTTTGAT
1 TTTACGGTTGAAATCGTTTGAT
*
4741170 TTTATGGTTGAAATCGTTTGAT
1 TTTACGGTTGAAATCGTTTGAT
4741192 T
1 T
4741193 GATCAATTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.51
Consensus pattern (22 bp):
TTTACGGTTGAAATCGTTTGAT
Found at i:4744444 original size:25 final size:25
Alignment explanation
Indices: 4744397--4744444 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
4744387 ATAACCAAAC
* *
4744397 GAATTTAAATAAATAAACTTTAAAT
1 GAATATAAATAAATAAACATTAAAT
4744422 GAATATAAATAAATACAA-ATTAA
1 GAATATAAATAAATA-AACATTAA
4744445 TATAAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.31
Consensus pattern (25 bp):
GAATATAAATAAATAAACATTAAAT
Found at i:4746376 original size:35 final size:37
Alignment explanation
Indices: 4746329--4746435 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
4746319 GGAGAAAGAC
4746329 GAATAATGAGTTACCATGCTTACAA-CTTTAAGATA-
1 GAATAATGAGTTACCATGCTTACAATCTTTAAGATAG
* *
4746364 GAATGATGAGTTACCGTGCTTACAATCTTTAAGATAG
1 GAATAATGAGTTACCATGCTTACAATCTTTAAGATAG
*
4746401 GAATAATGAGTTACCATGCTTACAATCGTTAAGAT
1 GAATAATGAGTTACCATGCTTACAATCTTTAAGAT
4746436 TCAATTTAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
35 23 0.35
36 10 0.15
37 32 0.49
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (37 bp):
GAATAATGAGTTACCATGCTTACAATCTTTAAGATAG
Found at i:4746627 original size:37 final size:37
Alignment explanation
Indices: 4746577--4746648 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
4746567 GGATAAAGAC
4746577 GAATAATGAGTTACCATGCTCACAATCTTTAAGATAG
1 GAATAATGAGTTACCATGCTCACAATCTTTAAGATAG
* *
4746614 GAATAATGAGTTACCTTGCTTACAATCTTTAAGAT
1 GAATAATGAGTTACCATGCTCACAATCTTTAAGAT
4746649 TCATTTTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (37 bp):
GAATAATGAGTTACCATGCTCACAATCTTTAAGATAG
Found at i:4746736 original size:213 final size:213
Alignment explanation
Indices: 4746364--4746794 Score: 772
Period size: 213 Copynumber: 2.0 Consensus size: 213
4746354 CTTTAAGATA
* * *
4746364 GAATGATGAGTTACCGTGCTTACAATCTTTAAGATAGGAATAATGAGTTACCATGCTTACAATCG
1 GAATAATGAGTTACCATGCTCACAATCTTTAAGATAGGAATAATGAGTTACCATGCTTACAATCG
*
4746429 TTAAGATTCAATTTAATAAGTGCCATCTTGTTGTCAACTCAAGTGCTTATGTTGTGTCATTGCTC
66 TTAAGATTCAATTTAATAAGTGCCATCTTGTTGTCAACTCAAGTGCTTATGTTGTGTCATTGCTA
4746494 AATGCTTAATCTGGTTTGAAAAGGTTGTGCTATTCTTTAGATGGTAGGTTGTTATTTGATTTGGG
131 AATGCTTAATCTGGTTTGAAAAGGTTGTGCTATTCTTTAGATGGTAGGTTGTTATTTGATTTGGG
4746559 GAAATAATGGATAAAGAC
196 GAAATAATGGATAAAGAC
* *
4746577 GAATAATGAGTTACCATGCTCACAATCTTTAAGATAGGAATAATGAGTTACCTTGCTTACAATCT
1 GAATAATGAGTTACCATGCTCACAATCTTTAAGATAGGAATAATGAGTTACCATGCTTACAATCG
* *
4746642 TTAAGATTCATTTTAATAAGTGCCATCTTGTTGTCAACTCAAGTGCTTGTGTTGTGTCATTGCTA
66 TTAAGATTCAATTTAATAAGTGCCATCTTGTTGTCAACTCAAGTGCTTATGTTGTGTCATTGCTA
4746707 AATGCTTAATCTGGTTTGAAAAGGTTGTGCTATTCTTTAGATGGTAGGTTGTTATTTGATTTGGG
131 AATGCTTAATCTGGTTTGAAAAGGTTGTGCTATTCTTTAGATGGTAGGTTGTTATTTGATTTGGG
* *
4746772 GAAGTAATGGATAAAGAG
196 GAAATAATGGATAAAGAC
4746790 GAATA
1 GAATA
4746795 GTAAGACACT
Statistics
Matches: 208, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
213 208 1.00
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.37
Consensus pattern (213 bp):
GAATAATGAGTTACCATGCTCACAATCTTTAAGATAGGAATAATGAGTTACCATGCTTACAATCG
TTAAGATTCAATTTAATAAGTGCCATCTTGTTGTCAACTCAAGTGCTTATGTTGTGTCATTGCTA
AATGCTTAATCTGGTTTGAAAAGGTTGTGCTATTCTTTAGATGGTAGGTTGTTATTTGATTTGGG
GAAATAATGGATAAAGAC
Found at i:4752002 original size:56 final size:54
Alignment explanation
Indices: 4751927--4752033 Score: 128
Period size: 56 Copynumber: 1.9 Consensus size: 54
4751917 TTTATTTTTT
* *
4751927 ATAAATTTTATTATGAAATTCT-TCAATAGTTTAGTATAATTCAT-AATTTTGAA
1 ATAAATTTTATTATAAAATTCTCT-AATAGTTTAGTAGAATTCATAAATTTTGAA
* *
4751980 ATAAATCTTTACTTATAAAAATTCTCTAATTGTTTCGTAGAATTCATAAATTTT
1 ATAAAT-TTTA-TTAT-AAAATTCTCTAATAGTTTAGTAGAATTCATAAATTTT
4752034 ATTTTTTAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
53 6 0.13
54 4 0.09
55 4 0.09
56 24 0.53
57 7 0.16
ACGTcount: A:0.38, C:0.08, G:0.07, T:0.47
Consensus pattern (54 bp):
ATAAATTTTATTATAAAATTCTCTAATAGTTTAGTAGAATTCATAAATTTTGAA
Found at i:4757332 original size:14 final size:15
Alignment explanation
Indices: 4757297--4757334 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
4757287 TTTATCTTTA
4757297 TTAAATATTAGTTTT
1 TTAAATATTAGTTTT
4757312 TTAAAATATTA-TTTT
1 TT-AAATATTAGTTTT
4757327 TTAAATAT
1 TTAAATAT
4757335 CTTCTGCAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 6 0.27
15 8 0.36
16 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (15 bp):
TTAAATATTAGTTTT
Found at i:4759334 original size:209 final size:201
Alignment explanation
Indices: 4758795--4759495 Score: 681
Period size: 209 Copynumber: 3.4 Consensus size: 201
4758785 ACGAATCTAT
* * ** * * ** **
4758795 TGTGACAATAAAATTAAACATCAACTTAT-ACTTTTTTTTTGTGACATT-GGTTTTCGTCAATTA
1 TGTGATAATAAAATCAAATGTCACCTTATAAATTTTTTTTTGTGATGTTAGG-TTTCGTCAGCTA
* * * * *
4758858 TTTATGAAAAAAAAAGGTCATTAAAAGCTATAATCATTATAAAATAAATGATAAAATATGATATA
65 TTTATG--AAAAAAA-GTCATTAAAAGCTATAATCGTCACAAAATAAATAATAAAATTTGATATA
* * * * *
4758923 TTAGTGATGAAAGGCAAATCATCATAGTATTGGTAACACATTTATCGTCACTAATGATTGTAAGA
127 TTAGTGAAGAAAGGTAAATCATCATAGTATTGGTGACACAATTATCGTCACCAATGATTGTAAGA
**
4758988 TAACATCAAA
192 TAATGTCAAA
* * * *
4758998 TGTGACAATAAAATCAAATGTCACCTTATAAATTTTTTTTTGTGATGTTAGTTTTCATTAGCTAT
1 TGTGATAATAAAATCAAATGTCACCTTATAAATTTTTTTTTGTGATGTTAGGTTTCGTCAGCTAT
* * * * * *
4759063 TTATGAAAAATATTTATTAAAAGTTATAATCGTCACAAAATAAATAATAAAATTTAATATATTAA
66 TTATGAAAAAAAGTCATTAAAAGCTATAATCGTCACAAAATAAATAATAAAATTTGATATATTAG
* * * * * * *
4759128 TGACGAAAAGTAAATCATCACAGTATTGGTGACACAACTATCATCACCAATAATTGTAAAATAAT
131 TGAAGAAAGGTAAATCATCATAGTATTGGTGACACAATTATCGTCACCAATGATTGTAAGATAAT
4759193 GTCAAA
196 GTCAAA
* * ***
4759199 CGTGATAATAAAATCAAATGTCACTTTATGTTTTTTTTTTTTTTTTTTTGTGATGTTAGGTTTCG
1 TGTGATAATAAAATCAAATGTCACCTTA--------TAAATTTTTTTTTGTGATGTTAGGTTTCG
* ** *
4759264 TCAGCTATTTATGAAAAAAAGTCATCAATGGCTATAATTGTCACAAAATAAATAATAAAATTTGA
58 TCAGCTATTTATGAAAAAAAGTCATTAAAAGCTATAATCGTCACAAAATAAATAATAAAATTTGA
** * * *
4759329 TATATTAGTGAAGAAAGGTAAATTGTCATAGTATTGGTGACACAATTAAT-GTTATCAATGATTA
123 TATATTAGTGAAGAAAGGTAAATCATCATAGTATTGGTGACACAATT-ATCGTCACCAATGATTG
4759393 TAAGATAATGTCAAA
187 TAAGATAATGTCAAA
** * ** * *
4759408 TGTGATAATAAAATCAAGCGTCACCTTATATATATTTTTTTTGTGACATTAGGTTTTGTCAACTA
1 TGTGATAATAAAATCAAATGTCACCTTATAAAT-TTTTTTTTGTGATGTTAGGTTTCGTCAGCTA
* *
4759473 TATATAAAAAAAATGTCA-TAAAA
65 TTTATGAAAAAAA-GTCATTAAAA
4759496 TAAATGATAA
Statistics
Matches: 403, Mismatches: 82, Indels: 27
0.79 0.16 0.05
Matches are distributed among these distances:
201 129 0.32
202 46 0.11
203 29 0.07
204 30 0.07
205 1 0.00
209 166 0.41
210 2 0.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (201 bp):
TGTGATAATAAAATCAAATGTCACCTTATAAATTTTTTTTTGTGATGTTAGGTTTCGTCAGCTAT
TTATGAAAAAAAGTCATTAAAAGCTATAATCGTCACAAAATAAATAATAAAATTTGATATATTAG
TGAAGAAAGGTAAATCATCATAGTATTGGTGACACAATTATCGTCACCAATGATTGTAAGATAAT
GTCAAA
Found at i:4760235 original size:14 final size:12
Alignment explanation
Indices: 4760203--4760230 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
4760193 CATTCAAAAA
4760203 TTTTATTAATTT
1 TTTTATTAATTT
4760215 TTTTATTAATTT
1 TTTTATTAATTT
4760227 TTTT
1 TTTT
4760231 TTATTTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTTATTAATTT
Found at i:4760241 original size:16 final size:14
Alignment explanation
Indices: 4760203--4760235 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
4760193 CATTCAAAAA
4760203 TTTTATTAA--TTT
1 TTTTATTAATTTTT
4760215 TTTTATTAATTTTT
1 TTTTATTAATTTTT
4760229 TTTTATT
1 TTTTATT
4760236 TTAATTGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
14 10 0.53
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTATTAATTTTT
Found at i:4761792 original size:14 final size:14
Alignment explanation
Indices: 4761756--4761806 Score: 54
Period size: 14 Copynumber: 3.8 Consensus size: 14
4761746 AAAAATGGAG
4761756 AAAAAAT-AATAAT
1 AAAAAATAAATAAT
**
4761769 AAAATTTAAATAAT
1 AAAAAATAAATAAT
4761783 AAAAAATAAA-AATT
1 AAAAAATAAATAA-T
4761797 AAAAAA-AAAT
1 AAAAAATAAAT
4761807 GGTGTTTACA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 10 0.32
14 21 0.68
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (14 bp):
AAAAAATAAATAAT
Found at i:4762033 original size:46 final size:46
Alignment explanation
Indices: 4761983--4762761 Score: 1165
Period size: 46 Copynumber: 17.0 Consensus size: 46
4761973 TTGAAAGTTT
* *
4761983 AAAAGGCTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
* **
4762029 AAAAGGTTCCTCTCAGCAGAGGCTCAATGACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
* * *
4762075 AAAAGGCTCCTTTCAGTAGAGGCTCAACGACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
* * *
4762121 AAAGGGCTCCTTTCAGCAGAGGCTCAACAACTTTAAAATT-TCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762166 AAAAGGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762212 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-TCTCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
** * * *
4762257 AAAAAACTCCTCTCAGTAGAGGCTCAACGACTATAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762303 AAAAGGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
* * *
4762349 AAAACGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATT-TCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
** *
4762394 AAAAGGCTCCTCTCAGCAGAGGCTCAATGACTTTAAAATTCTCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762440 AAAAGGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
* * *
4762486 AAAATGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATT-TCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
* *
4762531 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT-TCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762576 AAAAGGCTCCTCTTAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762622 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT-TCATG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
*
4762667 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTCTTG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-T-TCTCTTG
*
4762715 AAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTT
1 -AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TCTT
4762762 CTGTTTTCAA
Statistics
Matches: 668, Mismatches: 56, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
45 246 0.37
46 372 0.56
47 3 0.00
48 9 0.01
49 38 0.06
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (46 bp):
AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTG
Found at i:4762198 original size:91 final size:92
Alignment explanation
Indices: 4761983--4762761 Score: 1165
Period size: 91 Copynumber: 8.5 Consensus size: 92
4761973 TTGAAAGTTT
* * *
4761983 AAAAGGCTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTCTTGAAAAGGTTCCTCTCAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
** *
4762048 AGGCTCAATGACTTTAAAATTCTCTTG
66 AGGCTCAACAACTTTAAAATTCTCATG
* * * * *
4762075 AAAAGGCTCCTTTCAGTAGAGGCTCAACGACTTTAAAATTCTCTTGAAAGGGCTCCTTTCAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4762140 AGGCTCAACAACTTTAAAATT-TCATG
66 AGGCTCAACAACTTTAAAATTCTCATG
*
4762166 AAAAGGCTCCTCTCAGCAGAGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4762231 AGGCTCAACAACTTTAAAA-TCTCATG
66 AGGCTCAACAACTTTAAAATTCTCATG
** * * * *
4762257 AAAAAACTCCTCTCAGTAGAGGCTCAACGACTATAAAATTCTCTTGAAAAGGCTCATCTCAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
*
4762322 AGGCTCAACAACTTTAAAATTCTCTTG
66 AGGCTCAACAACTTTAAAATTCTCATG
* * *
4762349 AAAACGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAATT-TCATGAAAAGGCTCCTCTCAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
**
4762413 AGGCTCAATGACTTTAAAATTCTCATG
66 AGGCTCAACAACTTTAAAATTCTCATG
* * *
4762440 AAAAGGCTCCTCTCAACAGAGGCTCAACAACTTTAAAATTCTCTTGAAAATGCTCCTCTCAGTAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
4762505 AGGCTCAACAACTTTAAAATT-TCATG
66 AGGCTCAACAACTTTAAAATTCTCATG
* * *
4762531 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT-TCATGAAAAGGCTCCTCTTAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
*
4762595 AGGCTCAACAACTTTAAAATTCTCTTG
66 AGGCTCAACAACTTTAAAATTCTCATG
* *
4762622 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT-TCATGAAAAAGCTCCTCTCAGCAG
1 AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
*
4762686 AGGCTCAACAACTTTAAAATTCTCTCTTG
66 AGGCTCAACAACTTTAAAA-T-TCTCATG
*
4762715 AAAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCATCTT
1 -AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTC-TCTT
4762762 CTGTTTTCAA
Statistics
Matches: 630, Mismatches: 48, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
90 42 0.07
91 378 0.60
92 161 0.26
93 7 0.01
94 39 0.06
96 3 0.00
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (92 bp):
AAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAG
AGGCTCAACAACTTTAAAATTCTCATG
Found at i:4762198 original size:137 final size:137
Alignment explanation
Indices: 4761983--4762761 Score: 1211
Period size: 137 Copynumber: 5.7 Consensus size: 137
4761973 TTGAAAGTTT
* * * * *
4761983 AAAAGGCTCCTCTCAGTAGAGGCTTAACAACTTTAAAATTCTCTTGAAAAGGTTCCTCTCAGCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATGAAAAGGCTCCTCTCAGCAG
** * *
4762048 AGGCTCAATGACTTTAAAATTCTCTTGAAAAGGCTCCTTTCAGTAGAGGCTCAACGACTTTAAAA
66 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
*
4762113 TTCTCTTG
131 TT-TCATG
** *
4762121 AAAGGGCTCCTTTCAGCAGAGGCTCAACAACTTTAAAATT-TCATGAAAAGGCTCCTCTCAGCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATGAAAAGGCTCCTCTCAGCAG
* *
4762185 AGGCTCAACGACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
66 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
*
4762250 TCTCATG
131 TTTCATG
* * * * * *
4762257 AAAAAACTCCTCTCAGTAGAGGCTCAACGACTATAAAATTCTCTTGAAAAGGCTCATCTCAGCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATGAAAAGGCTCCTCTCAGCAG
*
4762322 AGGCTCAACAACTTTAAAATTCTCTTGAAAACGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
66 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
4762387 TTTCATG
131 TTTCATG
* ** *
4762394 AAAAGGCTCCTCTCAGCAGAGGCTCAATGACTTTAAAATTCTCATGAAAAGGCTCCTCTCAACAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATGAAAAGGCTCCTCTCAGCAG
*
4762459 AGGCTCAACAACTTTAAAATTCTCTTGAAAATGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
66 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
4762524 TTTCATG
131 TTTCATG
*
4762531 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATT-TCATGAAAAGGCTCCTCTTAGCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATGAAAAGGCTCCTCTCAGCAG
*
4762595 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA
66 AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
4762660 TTTCATG
131 TTTCATG
* *
4762667 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCTCTTGAAAAAAGCTCCTCTCAG
1 AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAA-T-TCTCATG-AAAAGGCTCCTCTCAG
4762732 CAGAGGCTCAACAACTTTAAAATTCATCTT
63 CAGAGGCTCAACAACTTTAAAATTC-TCTT
4762762 CTGTTTTCAA
Statistics
Matches: 591, Mismatches: 44, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
136 167 0.28
137 340 0.58
138 37 0.06
139 4 0.01
140 39 0.07
141 4 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (137 bp):
AAAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAATTCTCATGAAAAGGCTCCTCTCAGCAG
AGGCTCAACAACTTTAAAATTCTCTTGAAAAGGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAA
TTTCATG
Found at i:4764628 original size:25 final size:25
Alignment explanation
Indices: 4764594--4764643 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
4764584 CCATTTGTAT
4764594 GTGCCCCACAAACTCTATCATGCAC
1 GTGCCCCACAAACTCTATCATGCAC
4764619 GTGCCCCACAAACTCTATCATGCAC
1 GTGCCCCACAAACTCTATCATGCAC
4764644 TTCTTCAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.40, G:0.12, T:0.20
Consensus pattern (25 bp):
GTGCCCCACAAACTCTATCATGCAC
Found at i:4772593 original size:50 final size:50
Alignment explanation
Indices: 4772525--4772621 Score: 158
Period size: 50 Copynumber: 1.9 Consensus size: 50
4772515 GCTAATTTAC
*
4772525 TATTGTAAGCTTACATTTTATTTCAAATTACCATTTTGATGTTGTTAGCA
1 TATTGTAAGCTTAAATTTTATTTCAAATTACCATTTTGATGTTGTTAGCA
* * *
4772575 TATTGTTATCTTAAATTTTATTTCAAATTATCATTTTGATGTTGTTA
1 TATTGTAAGCTTAAATTTTATTTCAAATTACCATTTTGATGTTGTTA
4772622 ACAGTTGGGG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.53
Consensus pattern (50 bp):
TATTGTAAGCTTAAATTTTATTTCAAATTACCATTTTGATGTTGTTAGCA
Found at i:4776899 original size:583 final size:585
Alignment explanation
Indices: 4775901--4777056 Score: 1689
Period size: 583 Copynumber: 2.0 Consensus size: 585
4775891 ACTAACAGTG
* * * * *
4775901 GAATCATCTATGGTAATTTCAAATATATTATTTGTTAACTCCAAAAAATAGTACTTATCAGTATC
1 GAATCATCCATGATAATTTCAAATATATCATTTGTCAACTCCAAAAAATAATACTTATCAGTATC
4775966 AACATTCTCGATCACTTGAATATTGAAGTTGTAATGAACCACCAAGTCATGCAACTTTAAACTCG
66 AACATTCTCGATCACTTGAATATTGAAGTTGTAATGAACCACCAAGTCATGCAACTTTAAACTCG
* * * * * ** *
4776031 CCATTAGCAATTGTTTCACTCACTATTAATAATTCATTGTTAAATGAAAGAAATATTTTTTTAAT
131 CCATTAACAATTATTTCACTCACCATCAATAATTCATTATTAAAACAAAGAAATAATTTTTTAAT
* * *
4776096 GAATAAGGGTTGTTAGATTCAGTTGAGAACTAAAGACAATGGCAAACAAATCATAGTAATCAAGT
196 GAATAAGCGTTGTTAGATTCAGATGAGAACTAAAGACAATGGCAAACAAATCACAGTAATCAAGT
* * *
4776161 ACAAAATATCTATTAAATTATTTCAAACTTTAAAACGAACAAAATTATATTATTATTTTATAATT
261 ACAAAACATCTATTAAACTATTTCAAACTTTAAAACGAACAAAATTATATTATTAATTTATAATT
* *
4776226 TATTTTATATTATGATTCACAACATCAAAAACATCACCTTGTAGTCATCACAGTCCCTATTCTCA
326 TATTTTATATTATGATTCACAACATCAAAAACATCACCTTGCAGTCATCACAGTCCCTAATCTCA
** * * *
4776291 TTTCTCCTCATTCCTATTGTAAGGTAAAGTTAAATT-AG-GATCAAAAGATAATCATCTTA-ATA
391 TTTCTCCTCATTCCTATAATAAGGTAAAGTTAAATTAAGAGATAAAAAAATAATCATCTCACAT-
4776353 TTTTTTTAAACATA-AATATCTTTCATCTTTAATCCCATTCCAATAAAATTTTAG-TTTTTTCTA
455 TTTTTTTAAACA-AGAATATCTTTCATCTTTAATCCCATTCCAATAAAATTTTAGTTTTTTTCTA
* * * * *
4776416 TTAGAAAAGGCAAACATGATGCATAGACTTCTATAATGTGCAAATCCTTATTCTTATGCCAACAA
519 TTAGAAAAGGAAAACAAGATACATAGACTTCAACAATGTGCAAATCCTTATTCTTATGCCAACAA
4776481 TT
584 TT
4776483 GAATCATCCATGATAATTTCAAATATATCATTTGTCAACTCCAAGAAAA-AATACTTATCAGTAT
1 GAATCATCCATGATAATTTCAAATATATCATTTGTCAACTCCAA-AAAATAATACTTATCAGTAT
* * *
4776547 CAACATTTTCGATCACTTGAATATTGGAGTTGTAATGAACCACCAAGTCATGCAACTTTGAACTC
65 CAACATTCTCGATCACTTGAATATTGAAGTTGTAATGAACCACCAAGTCATGCAACTTTAAACTC
** *
4776612 GCCATTAACAATTATTTCAAACTTGCCATCAATAATTTATTATTAAAACAAAGAAATAATTTTTT
130 GCCATTAACAATTATTTC--ACTCACCATCAATAATTCATTATTAAAACAAAGAAATAATTTTTT
* * * * *
4776677 AATGAATAAGCGTTGTTGGGTTCAGATGA-AATTCAAGACAATGGCAAACAAATCACAGTAATTA
193 AATGAATAAGCGTTGTTAGATTCAGATGAGAACTAAAGACAATGGCAAACAAATCACAGTAATCA
* *
4776741 AGTACAAAGCATCTATTAAACTATTTCAAACTTTAAAATGAACAAAATTATATTATTAATTTATA
258 AGTACAAAACATCTATTAAACTATTTCAAACTTTAAAACGAACAAAATTATATTATTAATTTATA
*
4776806 ATTTATTTTATATTATGATTCACAACATCAAAAACATC-CCTTTGCAGTCATCATAGTCCCTAAT
323 ATTTATTTTATATTATGATTCACAACATCAAAAACATCACC-TTGCAGTCATCACAGTCCCTAAT
*
4776870 CTCATTTCTCCTCATTCTTATAATAAGGTAAAGTTAAATTAAGATAAATAAGATAAAAAAATAAT
387 CTCATTTCTCCTCATTCCTATAATAAGGTAAAGTTAAATTAAG-------AGATAAAAAAATAAT
* *
4776935 CATCTCAGCATTTTTTTTATACAAGAATATCTTTCATCTTTGATCCCATTCCAATAAAATTTTAG
445 CATCTCA-CATTTTTTTTAAACAAGAATATCTTTCATCTTTAATCCCATTCCAATAAAATTTTAG
*
4777000 TTTTTTTCTATTAGAAAAGGAAAACAAGATACATAGACTTCAACAATGTGTAAATCC
509 TTTTTTTCTATTAGAAAAGGAAAACAAGATACATAGACTTCAACAATGTGCAAATCC
4777057 ATATAGCAAC
Statistics
Matches: 508, Mismatches: 49, Indels: 22
0.88 0.08 0.04
Matches are distributed among these distances:
582 134 0.26
583 190 0.37
584 63 0.12
592 19 0.04
593 50 0.10
594 52 0.10
ACGTcount: A:0.39, C:0.16, G:0.10, T:0.36
Consensus pattern (585 bp):
GAATCATCCATGATAATTTCAAATATATCATTTGTCAACTCCAAAAAATAATACTTATCAGTATC
AACATTCTCGATCACTTGAATATTGAAGTTGTAATGAACCACCAAGTCATGCAACTTTAAACTCG
CCATTAACAATTATTTCACTCACCATCAATAATTCATTATTAAAACAAAGAAATAATTTTTTAAT
GAATAAGCGTTGTTAGATTCAGATGAGAACTAAAGACAATGGCAAACAAATCACAGTAATCAAGT
ACAAAACATCTATTAAACTATTTCAAACTTTAAAACGAACAAAATTATATTATTAATTTATAATT
TATTTTATATTATGATTCACAACATCAAAAACATCACCTTGCAGTCATCACAGTCCCTAATCTCA
TTTCTCCTCATTCCTATAATAAGGTAAAGTTAAATTAAGAGATAAAAAAATAATCATCTCACATT
TTTTTTAAACAAGAATATCTTTCATCTTTAATCCCATTCCAATAAAATTTTAGTTTTTTTCTATT
AGAAAAGGAAAACAAGATACATAGACTTCAACAATGTGCAAATCCTTATTCTTATGCCAACAATT
Found at i:4786815 original size:62 final size:60
Alignment explanation
Indices: 4786664--4786981 Score: 333
Period size: 62 Copynumber: 5.2 Consensus size: 60
4786654 GAAAGAAATG
* * * *
4786664 ATTTTTTTTTGTAGGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGGAA
1 ATTTTATTTT-TAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAA
* *
4786723 ATTTCGATTTTCAAGG-AAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAA
1 ATTT-TATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAA
* *
4786783 ATTTTTGATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTCGAA
1 A-TTTT-ATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAA
** *
4786845 A--TTATTTCTGCAGGAAAATTGATACTTTCAACTTTTCCCCAAAAAATTTTTTTTTTTTGAA
1 ATTTTATTT-TTAAGGAAAATTGATACTTTCAACTTTTCCCC-AAAAA-TATTTTTTTTTGAA
* * * **
4786906 A-TTTATTTCTGAGGAAAATTGATTACTTTCAATTTTTCTCTAAAAATATATTTTTTTTTGGAA
1 ATTTTATTTTTAAGGAAAATTGA-TACTTTCAACTTTTC-CCCAAAA-ATATTTTTTTTT-GAA
*
4786969 TTTTTTATTTTTA
1 -ATTTTATTTTTA
4786982 TTTAAAGAAA
Statistics
Matches: 218, Mismatches: 25, Indels: 26
0.81 0.09 0.10
Matches are distributed among these distances:
58 35 0.16
59 38 0.17
60 19 0.09
61 36 0.17
62 77 0.35
63 5 0.02
65 8 0.04
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (60 bp):
ATTTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAA
Found at i:4786933 original size:121 final size:120
Alignment explanation
Indices: 4786678--4786962 Score: 386
Period size: 120 Copynumber: 2.4 Consensus size: 120
4786668 TTTTTTGTAG
*
4786678 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATA--TTTTTTGGAAATTTCGATTTTCAAGGAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTCGAAATTTC-ATTTTCAAGGAA
*
4786741 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTTGATTTTTAA
65 ATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAA-TTTTGATTTCTAA
4786798 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTCGAAA-TT-ATTTCTGC-AGGA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTCGAAATTTCATTT-T-CAAGG-
* *
4786860 AAATTGATACTTTCAACTTTTCCCCAAAAAATTTTTTTTTTTTGAAA-TTT-ATTTCTGA
63 AAATTGATACTTTCAACTTTTCCCC-AAAAA-TATTTTTTTTTGAAATTTTGATTTCTAA
* *
4786918 GGAAAATTGATTACTTTCAATTTTTCTCTAAAAATATATTTTTTT
1 GGAAAATTGA-TACTTTCAACTTTTCCCTAAAAATAT-TTTTTTT
4786963 TTGGAATTTT
Statistics
Matches: 150, Mismatches: 6, Indels: 16
0.87 0.03 0.09
Matches are distributed among these distances:
119 4 0.03
120 55 0.37
121 55 0.37
122 22 0.15
123 14 0.09
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (120 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTCGAAATTTCATTTTCAAGGAAA
TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAATTTTGATTTCTAA
Found at i:4787092 original size:28 final size:27
Alignment explanation
Indices: 4787039--4787109 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
4787029 AACCTAATCT
4787039 AATAAATAAAAATTAAAATAAACAAAGAA
1 AATAAAT-AAAA-TAAAATAAACAAAGAA
*
4787068 AATAAATAAAATAAAATAATTCAAAGAA
1 AATAAATAAAATAAAATAA-ACAAAGAA
*
4787096 AA-AAA-AAAAAAAAA
1 AATAAATAAAATAAAA
4787110 CCTGGAGCGG
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.21
27 11 0.28
28 13 0.33
29 7 0.18
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.15
Consensus pattern (27 bp):
AATAAATAAAATAAAATAAACAAAGAA
Found at i:4787097 original size:14 final size:14
Alignment explanation
Indices: 4787053--4787097 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
4787043 AATAAAAATT
4787053 AAAATAAA-CAAAG
1 AAAATAAATCAAAG
* *
4787066 AAAATAAATAAAAT
1 AAAATAAATCAAAG
*
4787080 AAAATAATTCAAAG
1 AAAATAAATCAAAG
4787094 AAAA
1 AAAA
4787098 AAAAAAAAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.76, C:0.04, G:0.04, T:0.16
Consensus pattern (14 bp):
AAAATAAATCAAAG
Found at i:4787139 original size:5 final size:5
Alignment explanation
Indices: 4787129--4787154 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
4787119 GCTCGGATCG
4787129 CGGCT CGGCT CGGCT CGGCT CGGCT C
1 CGGCT CGGCT CGGCT CGGCT CGGCT C
4787155 AAGGCAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.42, G:0.38, T:0.19
Consensus pattern (5 bp):
CGGCT
Found at i:4794592 original size:80 final size:79
Alignment explanation
Indices: 4794494--4794708 Score: 236
Period size: 80 Copynumber: 2.7 Consensus size: 79
4794484 TTTTTTTGCT
* *
4794494 GAATGGTATT-TGATGATATTGGGGGGCTGAATCGTACGCTGAATAGTTTGCTGAACCTTATTGT
1 GAATGGTATTGT-ATGATATTGGGGGGCTGAATCGTATGCTGAAT-GTTTGTTGAACCTTATTGT
*
4794558 ATGATATTGTATTATC
64 ATGATATTATATTATC
** * * * *
4794574 GAATGGTATTGTATGATATTGGAAGGCTGAATCATATGCTGAATGATTTATTGAACCTTGTTGTT
1 GAATGGTATTGTATGATATTGGGGGGCTGAATCGTATGCTGAATG-TTTGTTGAACCTTATTGTA
* * *
4794639 TGATATTATTTTGTT
65 TGATATTATATTATC
* * *
4794654 GAATGACT-TTGTATGATATTGAGGGGCTGAATCGTATGTTGAATGGTTTGTTGAA
1 GAATG-GTATTGTATGATATTGGGGGGCTGAATCGTATGCTGAAT-GTTTGTTGAA
4794709 TGATATTTTT
Statistics
Matches: 112, Mismatches: 19, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
79 1 0.01
80 108 0.96
81 3 0.03
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (79 bp):
GAATGGTATTGTATGATATTGGGGGGCTGAATCGTATGCTGAATGTTTGTTGAACCTTATTGTAT
GATATTATATTATC
Found at i:4798195 original size:305 final size:299
Alignment explanation
Indices: 4797775--4798356 Score: 709
Period size: 305 Copynumber: 1.9 Consensus size: 299
4797765 CTAAAATCGC
* * *
4797775 CTTCGATAATCACCCAAAAAATTAATTGTATAGAATATTAAAGGCGTTTTAAGAAAAAAAATACC
1 CTTCAATAATCACCCAAAAAATTAATTGCATAGAATATTAAAGGCGTTTTAAGAAAAAAAACACC
* * ** *
4797840 TTCAAGAATCTGTCGTGCCTTTTTTGTATGGATTATTAAAGGCGTTTTAAAAAAATGCATTTAAT
66 TTCAAAAATCTGTCGAGCCTTTTTTGTATAAATTATTAAAGGCGTTTTAAAAAAATGCATTCAAT
* * * * * *
4797905 AAAAACGACTAAAAATTAATCGAATGGATTATGAATGACGTTTTTCTATGGGTAACGGCTTTAAT
131 -AAAAC--C-AAAAA-TAATCGAATGGATTATGAAGGACATTTTCCTATGGGTAACGCCGTAAAT
* * *
4797970 AATTCC-TCACAAAATGTTATTGAAGGCGTTTTTGGATATAACCGCCTTTAATAATCCAACCATC
191 AA-TCCATAACAAAATGTTATTGAAGGCGTTTATGGATATAACCGCCTTCAATAATCCAACCATC
* * *
4798034 AAAATTTATTGTTTGGAATATTAATAGAGCTTTTTACCAAAAACGT
255 AAAAGTT-TCGTTTAGAATATTAATAGAGCTTTTTACCAAAAACGT
* * * ** *
4798080 CTTCAATAATC-CCACAAAAAATTTATTGCGTTGAATATTAAAGGCGTTTTGGGCAAAAAAACAC
1 CTTCAATAATCACC-CAAAAAATTAATTGCATAGAATATTAAAGGCGTTTTAAGAAAAAAAACAC
* * *
4798144 CTTCAAAAATCTGTCGAGTCTTTTTTGTATAAATTATTGAAGGCGTTTTAAAAAAATGCCTTCAA
65 CTTCAAAAATCTGTCGAGCCTTTTTTGTATAAATTATTAAAGGCGTTTTAAAAAAATGCATTCAA
* ** * * *
4798209 TAATACCAACTATAATTGAATGGATTATGAAGGGCATTTTCCTATGGGTAATGCCGTAAATAATC
130 TAAAACCAAAAATAATCGAATGGATTATGAAGGACATTTTCCTATGGGTAACGCCGTAAATAATC
* * * * * *
4798274 CATAACAAATTTTTATTGAAGGTGTTTATGGATATAACCGCCTTCAATAATTCAACCCTTAAAAG
195 CATAACAAAATGTTATTGAAGGCGTTTATGGATATAACCGCCTTCAATAATCCAACCATCAAAAG
4798339 TTTCGTTTAGAATATTAA
260 TTTCGTTTAGAATATTAA
4798357 AGGCGTTTTG
Statistics
Matches: 234, Mismatches: 41, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
299 17 0.07
300 97 0.41
301 3 0.01
302 1 0.00
304 6 0.03
305 110 0.47
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.34
Consensus pattern (299 bp):
CTTCAATAATCACCCAAAAAATTAATTGCATAGAATATTAAAGGCGTTTTAAGAAAAAAAACACC
TTCAAAAATCTGTCGAGCCTTTTTTGTATAAATTATTAAAGGCGTTTTAAAAAAATGCATTCAAT
AAAACCAAAAATAATCGAATGGATTATGAAGGACATTTTCCTATGGGTAACGCCGTAAATAATCC
ATAACAAAATGTTATTGAAGGCGTTTATGGATATAACCGCCTTCAATAATCCAACCATCAAAAGT
TTCGTTTAGAATATTAATAGAGCTTTTTACCAAAAACGT
Found at i:4809346 original size:53 final size:50
Alignment explanation
Indices: 4809286--4809428 Score: 162
Period size: 50 Copynumber: 2.8 Consensus size: 50
4809276 TTTTTTAGGA
* *
4809286 AAAAGTTGAAATATTAATTTTTTTTAAATAAAATTAATTTCAAA-AATAGAGGG
1 AAAAGTTGAAATATTAATTTTTCTT---TAAAA-TAATTTCAAAGAATAGAAGG
* * * **
4809339 AAGAGTTGAAATATCAATTTTTCTTTAAAATAATTTCAAAGTATTTAAGG
1 AAAAGTTGAAATATTAATTTTTCTTTAAAATAATTTCAAAGAATAGAAGG
*
4809389 AAAAGTTGAAATATTAATTTTTCCTTTAAAATGATTTCAA
1 AAAAGTTGAAATATTAATTTTT-CTTTAAAATAATTTCAA
4809429 GATTTTTAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
49 10 0.13
50 30 0.38
51 16 0.21
53 22 0.28
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (50 bp):
AAAAGTTGAAATATTAATTTTTCTTTAAAATAATTTCAAAGAATAGAAGG
Found at i:4809361 original size:101 final size:106
Alignment explanation
Indices: 4809177--4809410 Score: 282
Period size: 103 Copynumber: 2.3 Consensus size: 106
4809167 AGATAAAAAA
* * * * *
4809177 TAAGAAAAAAGTTGAATTATCAATTTTTTCTTGAATAAAAAATAATTTCAAAAATTGAGAAAAAA
1 TAAGGAAAAAGTTGAAATATTAATTTTTTCTTAAATAAAAAATAATTTCAAAAATAGAGAAAAAA
* * * *
4809242 GTTTAATTATTAAGTTTTCCTT-AAATAATTTC-AA-TTTT
66 GTTGAAATATCAAGTTTTCCTTAAAATAATTTCAAAGTATT
* * ** *
4809280 TTAGGAAAAAGTTGAAATATTAATTTTTT-TTAAAT-AAAATTAATTTCAAAAATAGAGGGAAGA
1 TAAGGAAAAAGTTGAAATATTAATTTTTTCTTAAATAAAAAATAATTTCAAAAATAGAGAAAAAA
* *
4809343 GTTGAAATATCAATTTTTCTTTAAAATAATTTCAAAGTATT
66 GTTGAAATATCAAGTTTTCCTTAAAATAATTTCAAAGTATT
4809384 TAAGG-AAAAGTTGAAATATTAATTTTT
1 TAAGGAAAAAGTTGAAATATTAATTTTT
4809411 CCTTTAAAAT
Statistics
Matches: 111, Mismatches: 17, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
101 40 0.36
102 15 0.14
103 49 0.44
104 7 0.06
ACGTcount: A:0.45, C:0.04, G:0.10, T:0.40
Consensus pattern (106 bp):
TAAGGAAAAAGTTGAAATATTAATTTTTTCTTAAATAAAAAATAATTTCAAAAATAGAGAAAAAA
GTTGAAATATCAAGTTTTCCTTAAAATAATTTCAAAGTATT
Found at i:4809437 original size:51 final size:49
Alignment explanation
Indices: 4809215--4809477 Score: 203
Period size: 48 Copynumber: 5.2 Consensus size: 49
4809205 TCTTGAATAA
* * * * * * *
4809215 AAAATAATTTCAAA-AATTGAGAAAAAAGTTTAATTATTAAGTTTTCCTT
1 AAAATAATTTCAAATATTTAAG-GAAAAGTTGAAATATTAATTTTTCTTT
* * *
4809264 -AAATAATTTC-AATTTTTTAGGAAAAAGTTGAAATATTAATTTTTTTTAAAT
1 AAAATAATTTCAAATATTTAAGG-AAAAGTTGAAATATTAATTTTTCTT---T
* ** * * *
4809315 AAAATTAATTTCAAAAATAGAGGGAAGAGTTGAAATATCAATTTTTCTTT
1 AAAA-TAATTTCAAATATTTAAGGAAAAGTTGAAATATTAATTTTTCTTT
4809365 AAAATAATTTCAAAGTATTTAAGGAAAAGTTGAAATATTAATTTTTCCTTT
1 AAAATAATTTCAAA-TATTTAAGGAAAAGTTGAAATATTAATTTTT-CTTT
* * *
4809416 AAAATGATTTCAAGATTTTTAAGGGAAGAA-TTGAAATATCAATTTTT-TCTT
1 AAAATAATTTCAA-ATATTTAA-GGAA-AAGTTGAAATATTAATTTTTCT-TT
4809467 AAAATTAATTT
1 AAAA-TAATTT
4809478 TCTTCTAAAA
Statistics
Matches: 171, Mismatches: 28, Indels: 27
0.76 0.12 0.12
Matches are distributed among these distances:
47 2 0.01
48 34 0.20
49 10 0.06
50 31 0.18
51 29 0.17
52 29 0.17
53 31 0.18
54 5 0.03
ACGTcount: A:0.44, C:0.05, G:0.10, T:0.41
Consensus pattern (49 bp):
AAAATAATTTCAAATATTTAAGGAAAAGTTGAAATATTAATTTTTCTTT
Found at i:4809478 original size:17 final size:17
Alignment explanation
Indices: 4809456--4809488 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
4809446 TTGAAATATC
4809456 AATTTT-TTCTTAAAATT
1 AATTTTCTTC-TAAAATT
4809473 AATTTTCTTCTAAAAT
1 AATTTTCTTCTAAAAT
4809489 GCTAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTTCTTCTAAAATT
Found at i:4813955 original size:3 final size:3
Alignment explanation
Indices: 4813947--4813996 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
4813937 TTAGATGCTT
4813947 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
4813995 TT
1 TT
4813997 TTGTTTCCTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:4826152 original size:56 final size:56
Alignment explanation
Indices: 4826086--4826215 Score: 154
Period size: 56 Copynumber: 2.3 Consensus size: 56
4826076 TCGCCTCATT
*
4826086 TGATTCGTGGTTTTGTCCCAATCACTTGATCTTGG-CTCAGTCCAGATCATTTCTTA
1 TGATTCGTGGTTTTATCCCAATCACTTGATCTTGGCCT-AGTCCAGATCATTTCTTA
* **** * *
4826142 TGATTCGTGGTCTTATCTTGGTCACTTGATCTTGGCCTAGTCTAGATCATTTTTTA
1 TGATTCGTGGTTTTATCCCAATCACTTGATCTTGGCCTAGTCCAGATCATTTCTTA
* *
4826198 TGATTCATGGTTTCATCC
1 TGATTCGTGGTTTTATCC
4826216 TGATCATTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
56 59 0.97
57 2 0.03
ACGTcount: A:0.17, C:0.21, G:0.18, T:0.44
Consensus pattern (56 bp):
TGATTCGTGGTTTTATCCCAATCACTTGATCTTGGCCTAGTCCAGATCATTTCTTA
Found at i:4826287 original size:174 final size:173
Alignment explanation
Indices: 4825990--4826325 Score: 413
Period size: 174 Copynumber: 1.9 Consensus size: 173
4825980 ATTATCCACC
** * *
4825990 CACTTGATCTTAGCTCAGTCCAAATCATTTTTTATGATTTGTGGTTTCATCTTGGTCATTTATTT
1 CACTTGATCTTAGCTCAGTCCAAATCATTTTTTATGATTCATGGTTTCATCCTGATCATTTATTT
* * * * * * * *
4826055 TTGACCTTGACTTGGTTCTGATCGCCTCATTTGATTCGTGGTTTTGTCCCAATCACTTGATCTTG
66 TCGACCTTGACTCGATCCTGATCGCCTCATTTGACTCGTAGTTTCGTCCCAATCACTTGATCTTA
*
4826120 GCTCAGTCCAGATCATTTCTTATGATTCGTGGTCTTATCTTGGT
131 GCTCAGT-CAGATCATTTCTTATGATTCATGGTCTTATCTTGGT
* * *
4826164 CACTTGATCTTGGC-CTAGTCTAGATCATTTTTTATGATTCATGGTTTCATCCTGATCATTTATT
1 CACTTGATCTTAGCTC-AGTCCAAATCATTTTTTATGATTCATGGTTTCATCCTGATCATTTATT
* * * **** *
4826228 TTCGACCTTGACTCGATCCTGGTTGCTTCATTTGACTCGTAGTTTCGTCTTGGTCACTTGATTTT
65 TTCGACCTTGACTCGATCCTGATCGCCTCATTTGACTCGTAGTTTCGTCCCAATCACTTGATCTT
* *
4826293 AGTTTAGTCAGATCATTTCTTATGATTCATGGT
130 AGCTCAGTCAGATCATTTCTTATGATTCATGGT
4826326 TTCGTCTCAG
Statistics
Matches: 135, Mismatches: 26, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
173 25 0.19
174 110 0.81
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.46
Consensus pattern (173 bp):
CACTTGATCTTAGCTCAGTCCAAATCATTTTTTATGATTCATGGTTTCATCCTGATCATTTATTT
TCGACCTTGACTCGATCCTGATCGCCTCATTTGACTCGTAGTTTCGTCCCAATCACTTGATCTTA
GCTCAGTCAGATCATTTCTTATGATTCATGGTCTTATCTTGGT
Found at i:4826469 original size:118 final size:117
Alignment explanation
Indices: 4826163--4826637 Score: 427
Period size: 118 Copynumber: 4.0 Consensus size: 117
4826153 CTTATCTTGG
* * **
4826163 TCACTTGATCTTGG-CCTAGTCTAGATCATTTTTTATGATTCATGGTTTCATCCTGATCATTTAT
1 TCACTTGATCTTGGTTC-AGTCTAGATCATTTCTTACAATTCATGGTTTCATCC-GATCATTTAT
* ** * * * * * *
4826227 TTTCGACCTTGACTCGATCCTGGTTGCTTCATTTGACTCGTAGTTTCGTCTTGG
64 TTTTGACCTCAACTAGGTCCTGGTTGCTTAATTTGACTCGTGGTTTCGTCTCGA
* * * ** *
4826281 TCACTTGATTTTAGTTTAGTC-AGATCATTTCTTATGATTCATGGTTTCGTCTC-AGTCATTTAT
1 TCACTTGATCTTGGTTCAGTCTAGATCATTTCTTACAATTCATGGTTTCATC-CGA-TCATTTAT
* * * * * *
4826344 TTTTGACCTCAATTTGGTCCTGATTGCTTTATTTGACTCATGGTTTCATCTCGA
64 TTTTGACCTCAACTAGGTCCTGGTTGCTTAATTTGACTCGTGGTTTCGTCTCGA
* * **
4826398 TCACTTGATCTTGGTTCAATCTAAATCATTTCTTACAATTTTTGGTTTCATCACGATCATTTATT
1 TCACTTGATCTTGGTTCAGTCTAGATCATTTCTTACAATTCATGGTTTCATC-CGATCATTTATT
* ** * * * *
4826463 TTTGACCTCAACTAAGTTTTGGTCGCCTAATTCGACTCGTGGTTTCGTCCCGA
65 TTTGACCTCAACTAGGTCCTGGTTGCTTAATTTGACTCGTGGTTTCGTCTCGA
** * * * *
4826516 TCACTTGATCTTGGTTCAGTCTAGATCATTTCTTATGATTCATAGTTTCACCCTAATCTTTTATT
1 TCACTTGATCTTGGTTCAGTCTAGATCATTTCTTACAATTCATGGTTTCATCC-GATCATTTATT
* * * * * *
4826581 TTTGACCTCGACTCA-GTCCTGGTTACCTCATTTGACTCGTAGTTTAGTCTCGA
65 TTTGACCTCAACT-AGGTCCTGGTTGCTTAATTTGACTCGTGGTTTCGTCTCGA
4826634 TCAC
1 TCAC
4826638 CCAACATTGG
Statistics
Matches: 287, Mismatches: 63, Indels: 14
0.79 0.17 0.04
Matches are distributed among these distances:
116 1 0.00
117 95 0.33
118 189 0.66
119 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.44
Consensus pattern (117 bp):
TCACTTGATCTTGGTTCAGTCTAGATCATTTCTTACAATTCATGGTTTCATCCGATCATTTATTT
TTGACCTCAACTAGGTCCTGGTTGCTTAATTTGACTCGTGGTTTCGTCTCGA
Found at i:4827380 original size:3 final size:3
Alignment explanation
Indices: 4827372--4827414 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
4827362 ATACACTTTA
4827372 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
4827415 TAAAATTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:4830148 original size:91 final size:91
Alignment explanation
Indices: 4829993--4830175 Score: 339
Period size: 91 Copynumber: 2.0 Consensus size: 91
4829983 GCTTTGGTAG
*
4829993 TGTTTATAACTGAAAGAGGCGTTTGTATTTGAAAACGTCTCTATATTAGCAGCATTTGTATCTTT
1 TGTTTATAACTGAAAGAGGCGTTTGTATTTGAAAACATCTCTATATTAGCAGCATTTGTATCTTT
4830058 CAGATGCCGCTAATTTAATGACATTT
66 CAGATGCCGCTAATTTAATGACATTT
*
4830084 TGTTTATAACTGAAAGAGGCGTTTGTATTTGAAAACATCTCTATATTAGCAGCGTTTGTATCTTT
1 TGTTTATAACTGAAAGAGGCGTTTGTATTTGAAAACATCTCTATATTAGCAGCATTTGTATCTTT
*
4830149 CAGATGCCGCTAATTTAATGGCATTT
66 CAGATGCCGCTAATTTAATGACATTT
4830175 T
1 T
4830176 TATGAGAAAA
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (91 bp):
TGTTTATAACTGAAAGAGGCGTTTGTATTTGAAAACATCTCTATATTAGCAGCATTTGTATCTTT
CAGATGCCGCTAATTTAATGACATTT
Found at i:4830478 original size:134 final size:133
Alignment explanation
Indices: 4830098--4830479 Score: 469
Period size: 134 Copynumber: 2.8 Consensus size: 133
4830088 TATAACTGAA
* * * * *
4830098 AGAGGCGTTTGTATTTGAAAACATCTCTATATTAGCA-GCGTTTGTATCTTTCAGATGCCGCTAA
1 AGAGGCGTTTGTATCTGAAAATACCTCTATATTA-AAGGCGTTTGTATCTTTGAGATGCCGCTAA
* * * *
4830162 TTTAATGGCATTTTTATGAGAAAAATGCCGTTGCTTTGGTGGCATTTGTAGCTGAAACCATCACT
65 TTTAGT-GCCTTTTTATGAGAAAAATGCAGTTGCTTTGGTGGCATTTGTAACTGAAACCATCACT
4830227 ACTTT
129 ACTTT
* * *
4830232 AGAGGTGTTTTGTATCTGAAAATACCTCTATATTAAAGGCGTTTGTATCATTGAGATGTCGCTAA
1 AGAGGCG-TTTGTATCTGAAAATACCTCTATATTAAAGGCGTTTGTATCTTTGAGATGCCGCTAA
* * * ** * *
4830297 TTTAGTGGCGTTTTATGAGAAACATGTTGTTGCTTTGGTGGCATTTGTAACTTAAACCGTCACTA
65 TTTAGTGCCTTTTTATGAGAAAAATGCAGTTGCTTTGGTGGCATTTGTAACTGAAACCATCACTA
4830362 CTTT
130 CTTT
* * *
4830366 AGAGGCGTTTGTATCTAAAAATACCTCTATATTAATGGCGTTTGTATCTTTGAGAGGCCGCTAAT
1 AGAGGCGTTTGTATCTGAAAATACCTCTATATTAAAGGCGTTTGTATCTTTGAGATGCCGCTAAT
* * * * * *
4830431 TTAGTAGCCTTTTTTTGAAAAAAACGCAATTGCTTTCGTGGCGTTTGTA
66 TTAGT-GCCTTTTTATGAGAAAAATGCAGTTGCTTTGGTGGCATTTGTA
4830480 TAAAAATGCC
Statistics
Matches: 210, Mismatches: 35, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
133 58 0.28
134 99 0.47
135 53 0.25
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (133 bp):
AGAGGCGTTTGTATCTGAAAATACCTCTATATTAAAGGCGTTTGTATCTTTGAGATGCCGCTAAT
TTAGTGCCTTTTTATGAGAAAAATGCAGTTGCTTTGGTGGCATTTGTAACTGAAACCATCACTAC
TTT
Found at i:4840441 original size:79 final size:79
Alignment explanation
Indices: 4840343--4840540 Score: 197
Period size: 79 Copynumber: 2.5 Consensus size: 79
4840333 TTTTTTTTGC
* *
4840343 TGAATGGTATTTTATGATATTAGGGGGCTGAATCGTATGCCGAAT-AGTTTGCTAAACCTTA-TT
1 TGAATGGTATTGTATGATATT-GGGGGCTGAATCGTATGCCGAATGA-TTTACTAAACC-TAGTT
*
4840406 GTATGATATTGTATT-A
63 GTATGATATTATATTGA
* * * * * *
4840422 TGAATGGTATTGTATGATATTGGAAGCCTGAATCATATGCTGAATGATTTATTGAACCTAGTTGT
1 TGAATGGTATTGTATGATATTGG-GGGCTGAATCGTATGCCGAATGATTTACTAAACCTAGTTGT
* * *
4840487 TTGATATTATTTTGT
65 ATGATATTATATTGA
*
4840502 TGAATGACT-TTGTATGATATTGGGGGGCTGAATCGTATG
1 TGAATG-GTATTGTATGATATT-GGGGGCTGAATCGTATG
4840541 TTGAATGGTT
Statistics
Matches: 97, Mismatches: 16, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
78 4 0.04
79 59 0.61
80 31 0.32
81 3 0.03
ACGTcount: A:0.27, C:0.08, G:0.24, T:0.41
Consensus pattern (79 bp):
TGAATGGTATTGTATGATATTGGGGGCTGAATCGTATGCCGAATGATTTACTAAACCTAGTTGTA
TGATATTATATTGA
Found at i:4851624 original size:37 final size:37
Alignment explanation
Indices: 4851574--4851658 Score: 161
Period size: 37 Copynumber: 2.3 Consensus size: 37
4851564 CCTATCATGC
4851574 ATCATTTTCATTGTCATATTTAATATTGTGCATTTGT
1 ATCATTTTCATTGTCATATTTAATATTGTGCATTTGT
*
4851611 ATCATTTTCATTGTCATATTTAATATTTTGCATTTGT
1 ATCATTTTCATTGTCATATTTAATATTGTGCATTTGT
4851648 ATCATTTTCAT
1 ATCATTTTCAT
4851659 ATAGGGAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.25, C:0.12, G:0.08, T:0.55
Consensus pattern (37 bp):
ATCATTTTCATTGTCATATTTAATATTGTGCATTTGT
Found at i:4854541 original size:15 final size:16
Alignment explanation
Indices: 4854499--4854543 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
4854489 ATAAAAAGAA
**
4854499 TGAAAAATAAAAAATG
1 TGAAAAATAAGGAATG
4854515 TGAAAAATAAGGAATG
1 TGAAAAATAAGGAATG
4854531 TGAAAAA-AAGGAA
1 TGAAAAATAAGGAA
4854544 AAAGGAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 6 0.22
16 21 0.78
ACGTcount: A:0.64, C:0.00, G:0.20, T:0.16
Consensus pattern (16 bp):
TGAAAAATAAGGAATG
Found at i:4855793 original size:24 final size:22
Alignment explanation
Indices: 4855730--4855801 Score: 103
Period size: 21 Copynumber: 3.3 Consensus size: 22
4855720 TAAAAATGAC
4855730 GAGAATCTTTG-AGTTTTAAAT
1 GAGAATCTTTGAAGTTTTAAAT
*
4855751 GAAAATCTTT-AAGTTTTAAAT
1 GAGAATCTTTGAAGTTTTAAAT
4855772 GAGAATCTTTAAGAAGTTTTAAAT
1 GAGAATCTTT--GAAGTTTTAAAT
4855796 GAGAAT
1 GAGAAT
4855802 TTTTTAATAA
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
21 28 0.62
24 17 0.38
ACGTcount: A:0.40, C:0.04, G:0.17, T:0.39
Consensus pattern (22 bp):
GAGAATCTTTGAAGTTTTAAAT
Found at i:4856207 original size:19 final size:18
Alignment explanation
Indices: 4856160--4856207 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
4856150 CAAATCTTTG
* *
4856160 AATCTTTGTAATTATTGCT
1 AATCTTTG-AATAATTGCA
4856179 AATC-TTGAATAACTTGCA
1 AATCTTTGAATAA-TTGCA
4856197 AATCTTTGAAT
1 AATCTTTGAAT
4856208 CTTTGGAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 4 0.16
18 11 0.44
19 10 0.40
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.44
Consensus pattern (18 bp):
AATCTTTGAATAATTGCA
Found at i:4856316 original size:16 final size:16
Alignment explanation
Indices: 4856297--4856327 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
4856287 TTTGCGAACT
*
4856297 TCAGTTTTTATGAATC
1 TCAGTTCTTATGAATC
4856313 TCAGTTCTTATGAAT
1 TCAGTTCTTATGAAT
4856328 TTTAAAATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.48
Consensus pattern (16 bp):
TCAGTTCTTATGAATC
Found at i:4856460 original size:17 final size:16
Alignment explanation
Indices: 4856394--4856472 Score: 77
Period size: 17 Copynumber: 4.7 Consensus size: 16
4856384 TCTTTTAAAA
*
4856394 TTGAATTCTTATGAAT
1 TTGAATTCTTGTGAAT
* * *
4856410 ATGAAATTATTGTTGAAA
1 TTG-AATTCTTG-TGAAT
*
4856428 TTGAATTCTTGCGAAT
1 TTGAATTCTTGTGAAT
4856444 TTGAATTCCTTGTGAAT
1 TTGAATT-CTTGTGAAT
4856461 TTGAAATTCTTG
1 TTG-AATTCTTG
4856473 CAAATCTGAA
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
16 12 0.24
17 28 0.56
18 10 0.20
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (16 bp):
TTGAATTCTTGTGAAT
Found at i:4856482 original size:17 final size:17
Alignment explanation
Indices: 4856431--4856484 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
4856421 GTTGAAATTG
4856431 AATTCTTGCGAATTTG-
1 AATTCTTGCGAATTTGA
*
4856447 AATTCCTTGTGAATTTGA
1 AATT-CTTGCGAATTTGA
* *
4856465 AATTCTTGCAAATCTGA
1 AATTCTTGCGAATTTGA
4856482 AAT
1 AAT
4856485 ATTGGTGAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
16 4 0.12
17 24 0.75
18 4 0.12
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (17 bp):
AATTCTTGCGAATTTGA
Found at i:4856493 original size:34 final size:34
Alignment explanation
Indices: 4856411--4856500 Score: 85
Period size: 34 Copynumber: 2.6 Consensus size: 34
4856401 CTTATGAATA
* * * *
4856411 TGAAATTATTGTTGAAATTG-AATTCTTGCGAATT
1 TGAAA-TATTGGTGAATTTGAAATTCTTGCAAATC
* *
4856445 TGAATTCCTT-GTGAATTTGAAATTCTTGCAAATC
1 TGAAAT-ATTGGTGAATTTGAAATTCTTGCAAATC
*
4856479 TGAAATATTGGTGAATCTGAAA
1 TGAAATATTGGTGAATTTGAAA
4856501 AATGCTTATG
Statistics
Matches: 44, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
33 10 0.23
34 34 0.77
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (34 bp):
TGAAATATTGGTGAATTTGAAATTCTTGCAAATC
Found at i:4856538 original size:18 final size:18
Alignment explanation
Indices: 4856517--4856555 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
4856507 TATGAACACA
4856517 AAAATTCTTACGAACCTG
1 AAAATTCTTACGAACCTG
* *
4856535 AAAATTTTTACGAATCTG
1 AAAATTCTTACGAACCTG
4856553 AAA
1 AAA
4856556 GTCTTGCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (18 bp):
AAAATTCTTACGAACCTG
Found at i:4860280 original size:27 final size:27
Alignment explanation
Indices: 4860241--4860295 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
4860231 TATATATATA
4860241 TATTGAACAAAAAATTTCAAACATCTT
1 TATTGAACAAAAAATTTCAAACATCTT
* *
4860268 TATTGAACTAAAAATTTCAAACGTCTT
1 TATTGAACAAAAAATTTCAAACATCTT
4860295 T
1 T
4860296 GACATGACTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.36
Consensus pattern (27 bp):
TATTGAACAAAAAATTTCAAACATCTT
Found at i:4860572 original size:2 final size:2
Alignment explanation
Indices: 4860565--4860608 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
4860555 ATTTATTCTC
* * *
4860565 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AT AT AC AC AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4860607 AT
1 AT
4860609 TAAGAGAGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:4863614 original size:9 final size:9
Alignment explanation
Indices: 4863600--4863664 Score: 76
Period size: 9 Copynumber: 7.1 Consensus size: 9
4863590 CTTTGTATTG
4863600 TTATTGTTA
1 TTATTGTTA
*
4863609 TTATTGTTG
1 TTATTGTTA
*
4863618 TTTTTGTTA
1 TTATTGTTA
*
4863627 TTATTATTA
1 TTATTGTTA
*
4863636 TTATTATTA
1 TTATTGTTA
*
4863645 TTATTATTA
1 TTATTGTTA
4863654 TTTATTGTTA
1 -TTATTGTTA
4863664 T
1 T
4863665 CAATTCTGCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
9 41 0.84
10 8 0.16
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (9 bp):
TTATTGTTA
Found at i:4863630 original size:3 final size:3
Alignment explanation
Indices: 4863595--4863655 Score: 68
Period size: 3 Copynumber: 20.3 Consensus size: 3
4863585 TTTTACTTTG
* * * * * *
4863595 TAT TGT TAT TGT TAT TAT TGT TGT TTT TGT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
4863643 TAT TAT TAT TAT T
1 TAT TAT TAT TAT T
4863656 TATTGTTATC
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:4864605 original size:53 final size:53
Alignment explanation
Indices: 4864505--4864605 Score: 157
Period size: 53 Copynumber: 1.9 Consensus size: 53
4864495 TATAATCATA
* * *
4864505 CAAACTTACTTATTAAGAATCCCTTTTCTTTTTAAAATTTTTTTTCTGTATGT
1 CAAACTTACCTATTAAGAATCCCTTTTCTTTTTAAAATTCTTCTTCTGTATGT
* *
4864558 CAAACTTACCTATTAAGAATCCCTTTTTTTTTTAGAATTCTTCTTCTG
1 CAAACTTACCTATTAAGAATCCCTTTTCTTTTTAAAATTCTTCTTCTG
4864606 CAAGTATTCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.26, C:0.18, G:0.06, T:0.50
Consensus pattern (53 bp):
CAAACTTACCTATTAAGAATCCCTTTTCTTTTTAAAATTCTTCTTCTGTATGT
Found at i:4865551 original size:44 final size:44
Alignment explanation
Indices: 4865464--4865551 Score: 101
Period size: 44 Copynumber: 2.0 Consensus size: 44
4865454 TCAAAATTAG
* *
4865464 GAAAAAAGTTAAACCATTAATTTTTCCTCAAAATAAAATTTTTA
1 GAAAAAAGTTAAACCATCAATTTTTCCTCAAAATAAAAATTTTA
*
4865508 GAAAAAAGTTGAAA-TATCAATTTTTCC-CTAAAA-AAATAATTTTA
1 GAAAAAAGTT-AAACCATCAATTTTTCCTC-AAAATAAA-AATTTTA
4865552 AATAAAACTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
43 4 0.11
44 31 0.82
45 3 0.08
ACGTcount: A:0.49, C:0.10, G:0.06, T:0.35
Consensus pattern (44 bp):
GAAAAAAGTTAAACCATCAATTTTTCCTCAAAATAAAAATTTTA
Found at i:4865603 original size:59 final size:56
Alignment explanation
Indices: 4865494--4865916 Score: 135
Period size: 52 Copynumber: 7.8 Consensus size: 56
4865484 TTTTTCCTCA
*
4865494 AAATAAAATTTTTAGAAAAAAGTTGAAATATCAATTTTTCCCTAAAAAAATAATTTT
1 AAATAAAATTTTTAGAAAAAAGTTAAAATATCAATTTTT-CCTAAAAAAATAATTTT
* * * *
4865551 AAATAAAACTTTTT-GAAGAAAAAGTTAAAATATTAATTTTT-TTAAGATAA-AATTTT
1 AAATAAAA-TTTTTAG-A-AAAAAGTTAAAATATCAATTTTTCCTAAAAAAATAATTTT
* * ** * * *
4865607 -AAGAAAA-TTTGAGGGAAAAGTTGAATTATCAATTTTTCCCTTAAAAGAAAATCATTTT
1 AAATAAAATTTTTAGAAAAAAGTTAAAATATCAATTTTT-CC-T-AAA-AAAATAATTTT
** * ** * *
4865665 -TTTAAAA--TTGAGAAAAAAGTTGGAATA-CAAATTTTCCT-------TAA-ATT
1 AAATAAAATTTTTAGAAAAAAGTTAAAATATCAATTTTTCCTAAAAAAATAATTTT
* * * * * **
4865709 GAATAAAATTTTCAAGGAAAAAGTTAAAATAAT-AATTTTTCCCAAGATGA-AATTTT
1 AAATAAAATTTT-TAGAAAAAAGTTAAAAT-ATCAATTTTTCCTAAAAAAATAATTTT
* * * * * * * * *
4865765 CAAGAAAAATGTGAGGAAAAAGTTAAAGTATTAATTTTTCCTTAAAAAAT--TTTT
1 AAATAAAATTTTTAGAAAAAAGTTAAAATATCAATTTTTCCTAAAAAAATAATTTT
*
4865819 ---TCAAAATTTTGAGAAAAAAGTTAAAATA-CTAATTTTTCCTCAAATAAAAATAATTTT
1 AAAT-AAAATTTTTAGAAAAAAGTTAAAATATC-AATTTTTCCT--AA-AAAAATAATTTT
* * * * * *
4865876 CAAGAAAA-TGTGAGGAAAAAA-TTAAAGTATTAATTTTTCCT
1 AAATAAAATTTTTA-GAAAAAAGTTAAAATATCAATTTTTCCT
4865917 TGAAATAATT
Statistics
Matches: 271, Mismatches: 57, Indels: 75
0.67 0.14 0.19
Matches are distributed among these distances:
44 2 0.01
45 7 0.03
47 2 0.01
48 13 0.05
49 9 0.03
52 51 0.19
53 3 0.01
54 9 0.03
55 44 0.16
56 25 0.09
57 38 0.14
58 36 0.13
59 32 0.12
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.36
Consensus pattern (56 bp):
AAATAAAATTTTTAGAAAAAAGTTAAAATATCAATTTTTCCTAAAAAAATAATTTT
Found at i:4865787 original size:55 final size:54
Alignment explanation
Indices: 4865723--4865916 Score: 189
Period size: 58 Copynumber: 3.5 Consensus size: 54
4865713 AAAATTTTCA
*
4865723 AGGAAAAAGTTAAAATAATAATTTTTCC-CAAGATGAAATTTTCAAGAAAAATGTG
1 AGGAAAAAGTTAAAATATTAATTTTTCCTCAA-AT-AAATTTTCAAGAAAAATGTG
* * *** * *
4865778 AGGAAAAAGTTAAAGTATTAATTTTTCCTTAAA-AAATTTT-TTCAAAATTTTG
1 AGGAAAAAGTTAAAATATTAATTTTTCCTCAAATAAATTTTCAAGAAAAATGTG
* *
4865830 AGAAAAAAGTTAAAATACTAATTTTTCCTCAAATAAAAATAATTTTCAAG-AAAATGTG
1 AGGAAAAAGTTAAAATATTAATTTTTCCTCAAAT----A-AATTTTCAAGAAAAATGTG
* *
4865888 AGGAAAAAATTAAAGTATTAATTTTTCCT
1 AGGAAAAAGTTAAAATATTAATTTTTCCT
4865917 TGAAATAATT
Statistics
Matches: 110, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
52 36 0.33
53 7 0.06
55 27 0.25
56 2 0.02
57 1 0.01
58 37 0.34
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (54 bp):
AGGAAAAAGTTAAAATATTAATTTTTCCTCAAATAAATTTTCAAGAAAAATGTG
Found at i:4865909 original size:110 final size:108
Alignment explanation
Indices: 4865726--4865930 Score: 308
Period size: 110 Copynumber: 1.9 Consensus size: 108
4865716 ATTTTCAAGG
* *
4865726 AAAAAGTTAAAATAATAATTTTTCCCAAGATGAAATTTTCAAGAAAAATGTGAGGAAAAAGTTAA
1 AAAAAGTTAAAATAATAATTTTTCCCAAGATAAAATTTTCAAGAAAAATGTGAGGAAAAAATTAA
4865791 AGTATTAATTTTTCCTT-AAAAAATTTTTTCAAAATTTTGAGA
66 AGTATTAATTTTTCCTTGAAAAAATTTTTTCAAAATTTTGAGA
*
4865833 AAAAAGTTAAAATACTAATTTTTCCTCAA-ATAAAAATAATTTTCAAG-AAAATGTGAGGAAAAA
1 AAAAAGTTAAAATAATAATTTTTCC-CAAGAT---AA-AATTTTCAAGAAAAATGTGAGGAAAAA
*
4865896 ATTAAAGTATTAATTTTTCCTTGAAATAATTTTTT
61 ATTAAAGTATTAATTTTTCCTTGAAAAAATTTTTT
4865931 TTCAAAAATA
Statistics
Matches: 88, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
107 26 0.30
108 3 0.03
110 38 0.43
111 21 0.24
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (108 bp):
AAAAAGTTAAAATAATAATTTTTCCCAAGATAAAATTTTCAAGAAAAATGTGAGGAAAAAATTAA
AGTATTAATTTTTCCTTGAAAAAATTTTTTCAAAATTTTGAGA
Found at i:4866064 original size:52 final size:50
Alignment explanation
Indices: 4865943--4866074 Score: 158
Period size: 51 Copynumber: 2.6 Consensus size: 50
4865933 CAAAAATAAG
* * *
4865943 AAGGAAGAATTTAAATATCAATCTTTCCTTTAAAATACTTTCAAAGAATTT
1 AAGGAAAAATTGAAATATCAAT-TTTTCTTTAAAATACTTTCAAAGAATTT
* * * *
4865994 AAGGAAAAGTTGAAATATCAATTTTTCTGTTTAAATATTTTC-AAGATTTTT
1 AAGGAAAAATTGAAATATCAATTTTTCT-TTAAAATACTTTCAAAGA-ATTT
4866045 AAGGAAAAAATTGAAATATCAATTTTTCTT
1 AAGG-AAAAATTGAAATATCAATTTTTCTT
4866075 AGAAATTAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
50 9 0.13
51 38 0.54
52 23 0.33
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (50 bp):
AAGGAAAAATTGAAATATCAATTTTTCTTTAAAATACTTTCAAAGAATTT
Found at i:4875972 original size:26 final size:25
Alignment explanation
Indices: 4875917--4875972 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
4875907 TTTCACCTAA
* *
4875917 AAATTTTATAAAAATTTATCATTTG
1 AAATTTTATAAAAATTTATCAGTAG
*
4875942 AAATTTT-TATAAATTTCATCAGTAG
1 AAATTTTATAAAAATTT-ATCAGTAG
4875967 ATAATT
1 A-AATT
4875973 AATATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
24 8 0.31
25 14 0.54
26 4 0.15
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (25 bp):
AAATTTTATAAAAATTTATCAGTAG
Found at i:4877366 original size:43 final size:43
Alignment explanation
Indices: 4877174--4877726 Score: 520
Period size: 43 Copynumber: 12.8 Consensus size: 43
4877164 TTAAATAGAA
* * * * *
4877174 GCTCCACAACTTTCAAGAAATAAATAAGGCTCCTTTAAACAGAA
1 GCTCAACAACTTTGAA-AAATAAATAAGGCTCCTCTAAGCAGAG
* * * * * * * * *
4877218 GCTAAAAAACTTTTAAAAAATAAACAAAGTTCCTCTAAACAAAA
1 GCTCAACAAC-TTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * * * * * *
4877262 GCTCAATAACTTTTGAAAAATAAATAAAGCTCTTATAGGCAAAA
1 GCTCAACAAC-TTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * * * * * *
4877306 GCTTAACGACTTTAAAAAATAAATAATGTTTCTCTAA-AAGAG
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * *
4877348 GCTCAACAACTTTAAAAAATAAATAAAGCTCCTCTAAGTAGAG
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* *
4877391 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTTTAAGCAGAC
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * * *
4877434 ACTCAACAA-TTTAAAAAAAAAAAATAAGGCTCCTCTAAGCAAAG
1 GCTCAACAACTTT--GAAAAATAAATAAGGCTCCTCTAAGCAGAG
* *
4877478 GCTCAACAACTTTGGAAAATAAATAAGGCTCCTCTAAGTAGAG
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * * *
4877521 GCTCAACAACTTCGGAAAATAAATAAGGCTCCTTTAAGCAGAC
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
*
4877564 GCTCAACAA-TTT-ACAAAAAAAATAAGGCTCCTCTAAGCAGAG
1 GCTCAACAACTTTGA-AAAATAAATAAGGCTCCTCTAAGCAGAG
* * *
4877606 GCTCAACAACTTTGGAAAATAAATAAGGCTTCTCTAAGTAGAG
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * * *
4877649 ACTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAAGTAGAG
1 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
* * * *
4877692 GCAACAACGACTTTGAAAAATAAATAGGGATCCTC
1 GC-TCAACAACTTTGAAAAATAAATAAGGCTCCTC
4877727 GACAATCATG
Statistics
Matches: 423, Mismatches: 77, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
42 73 0.17
43 210 0.50
44 132 0.31
45 8 0.02
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.23
Consensus pattern (43 bp):
GCTCAACAACTTTGAAAAATAAATAAGGCTCCTCTAAGCAGAG
Found at i:4877668 original size:128 final size:127
Alignment explanation
Indices: 4877262--4877686 Score: 557
Period size: 128 Copynumber: 3.3 Consensus size: 127
4877252 CTAAACAAAA
* * * * * *
4877262 GCTCAATAACTTTTGAAAAATAAATAAAGCT-CTTATAGGCAAAAGCTTAACGACTTTAAAAAAT
1 GCTCAACAAC-TTTGAAAAATAAATAAAGCTCCTT-TAAGCAGACGCTCAAC-AATTTAAAAAA-
* * * * ** *
4877326 AAATAATGTTTCTCTAA-AAGAGGCTCAACAACTTTAAAAAATAAATAAAGCTCCTCTAAGTAGA
62 AAATAAGGCTCCTCTAAGCAGAGGCTCAACAACTTTGGAAAATAAATAAGGCTCCTCTAAGTAGA
4877390 G
127 G
* *
4877391 GCTCAACAACTTTGAAAAATAAATAAGGCTCCTTTAAGCAGACACTCAACAATTTAAAAAAAAAA
1 GCTCAACAACTTTGAAAAATAAATAAAGCTCCTTTAAGCAGACGCTCAACAATTT---AAAAAAA
*
4877456 AATAAGGCTCCTCTAAGCAAAGGCTCAACAACTTTGGAAAATAAATAAGGCTCCTCTAAGTAGAG
63 AATAAGGCTCCTCTAAGCAGAGGCTCAACAACTTTGGAAAATAAATAAGGCTCCTCTAAGTAGAG
* * *
4877521 GCTCAACAACTTCGGAAAATAAATAAGGCTCCTTTAAGCAGACGCTCAACAATTTACAAAAAAAA
1 GCTCAACAACTTTGAAAAATAAATAAAGCTCCTTTAAGCAGACGCTCAACAATTTA-AAAAAAAA
*
4877586 TAAGGCTCCTCTAAGCAGAGGCTCAACAACTTTGGAAAATAAATAAGGCTTCTCTAAGTAGAG
65 TAAGGCTCCTCTAAGCAGAGGCTCAACAACTTTGGAAAATAAATAAGGCTCCTCTAAGTAGAG
* * *
4877649 ACTCAACGACTTTGAAAAATAAATAAAGCTCCTCTAAG
1 GCTCAACAACTTTGAAAAATAAATAAAGCTCCTTTAAG
4877687 TAGAGGCAAC
Statistics
Matches: 263, Mismatches: 27, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
127 5 0.02
128 131 0.50
129 26 0.10
130 101 0.38
ACGTcount: A:0.44, C:0.18, G:0.14, T:0.24
Consensus pattern (127 bp):
GCTCAACAACTTTGAAAAATAAATAAAGCTCCTTTAAGCAGACGCTCAACAATTTAAAAAAAAAT
AAGGCTCCTCTAAGCAGAGGCTCAACAACTTTGGAAAATAAATAAGGCTCCTCTAAGTAGAG
Found at i:4878251 original size:44 final size:44
Alignment explanation
Indices: 4878200--4878307 Score: 112
Period size: 44 Copynumber: 2.5 Consensus size: 44
4878190 CTCCTCATTT
* * *
4878200 GAGTTCAAAAATTCACATTCAATAAATCTTAGAGTTTCACAT-CTA
1 GAGTTCAAAAATTCACATTCAA-AAAT-TTAAAGATTCACATCCAA
** *
4878245 -AGTTCAAAGGTTCGCATTCAAAAATTTAAAGATTCACATCCAA
1 GAGTTCAAAAATTCACATTCAAAAATTTAAAGATTCACATCCAA
* *
4878288 GAGTTCAAAACTTCTCATTC
1 GAGTTCAAAAATTCACATTC
4878308 GAGTTTGAAG
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
42 12 0.23
43 6 0.12
44 34 0.65
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (44 bp):
GAGTTCAAAAATTCACATTCAAAAATTTAAAGATTCACATCCAA
Found at i:4878345 original size:108 final size:109
Alignment explanation
Indices: 4878183--4878405 Score: 295
Period size: 108 Copynumber: 2.1 Consensus size: 109
4878173 ATTCCAAATT
* *
4878183 TTCAAAACTCCTCATTTGAGTTCAAAAATTCACATTCAATAAATCTTAGAGTTTCACATCTAAGT
1 TTCAAAACTCCTCATTCGAGTTCAAAAATTCACATTCAATAAATCTTAGAGTTTCACATCTAAAT
* *
4878248 TCAAAGGTTCGCATTCAAAAATTTAAAGATTCACATCC-AAGAG
66 TCAAAGGTTCACATTCAAAAATTTAAAGATTCACATCCAAAAAG
* ** * ** *
4878291 TTCAAAACTTCTCATTCGAGTTTGAAGATTCACATTTGATAAATCTTATAGTTTCACATCTAAAT
1 TTCAAAACTCCTCATTCGAGTTCAAAAATTCACATTCAATAAATCTTAGAGTTTCACATCTAAAT
** ***
4878356 TTGAAGGTTCACATTCAAAAATTTTGGGATTCACATCCAAAAAG
66 TCAAAGGTTCACATTCAAAAATTTAAAGATTCACATCCAAAAAG
4878400 TTCAAA
1 TTCAAA
4878406 GCTTTTTTGA
Statistics
Matches: 98, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
108 88 0.90
109 10 0.10
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (109 bp):
TTCAAAACTCCTCATTCGAGTTCAAAAATTCACATTCAATAAATCTTAGAGTTTCACATCTAAAT
TCAAAGGTTCACATTCAAAAATTTAAAGATTCACATCCAAAAAG
Found at i:4879652 original size:24 final size:22
Alignment explanation
Indices: 4879625--4879684 Score: 84
Period size: 24 Copynumber: 2.6 Consensus size: 22
4879615 ATTTTTTCCA
4879625 TTCTTTCATTTTTTTCTTCACTTT
1 TTCTTTCATTTTTTTCTT--CTTT
*
4879649 TTCTTTCATTTTTTTCTTTTTT
1 TTCTTTCATTTTTTTCTTCTTT
*
4879671 TTTTTTCATTTTTT
1 TTCTTTCATTTTTT
4879685 ATTTTTTTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 16 0.47
24 18 0.53
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (22 bp):
TTCTTTCATTTTTTTCTTCTTT
Found at i:4879689 original size:13 final size:12
Alignment explanation
Indices: 4879628--4879689 Score: 65
Period size: 12 Copynumber: 5.2 Consensus size: 12
4879618 TTTTCCATTC
4879628 TTTCATTTTTTT
1 TTTCATTTTTTT
* * *
4879640 CTTCACTTTTTC
1 TTTCATTTTTTT
4879652 TTTCATTTTTTT
1 TTTCATTTTTTT
*
4879664 CTT--TTTTTTT
1 TTTCATTTTTTT
4879674 TTTCATTTTTTAT
1 TTTCATTTTTT-T
4879687 TTT
1 TTT
4879690 TTTTCATCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
10 9 0.23
12 26 0.67
13 4 0.10
ACGTcount: A:0.08, C:0.13, G:0.00, T:0.79
Consensus pattern (12 bp):
TTTCATTTTTTT
Found at i:4879691 original size:17 final size:16
Alignment explanation
Indices: 4879665--4879696 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
4879655 CATTTTTTTC
4879665 TTTTTTTTTTTTCATT
1 TTTTTTTTTTTTCATT
4879681 TTTTATTTTTTTTCAT
1 TTTT-TTTTTTTTCAT
4879697 CCATTAGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.09, C:0.06, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTTTTTTTCATT
Found at i:4879701 original size:21 final size:21
Alignment explanation
Indices: 4879658--4879701 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
4879648 TTTCTTTCAT
* ** *
4879658 TTTTTTCTTTTTTTTTTTTCA
1 TTTTTTATTTTTTTTCATCCA
4879679 TTTTTTATTTTTTTTCATCCA
1 TTTTTTATTTTTTTTCATCCA
4879700 TT
1 TT
4879702 AGTGATATCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTATTTTTTTTCATCCA
Found at i:4880095 original size:19 final size:19
Alignment explanation
Indices: 4880071--4880109 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
4880061 CTTTTCTCTC
*
4880071 TTTTTTCTTTGTTTTGCTT
1 TTTTTTCTTTGTTTTACTT
* *
4880090 TTTTTTTTTTTTTTTACTT
1 TTTTTTCTTTGTTTTACTT
4880109 T
1 T
4880110 CTATCTTTGA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.03, C:0.08, G:0.05, T:0.85
Consensus pattern (19 bp):
TTTTTTCTTTGTTTTACTT
Found at i:4887332 original size:14 final size:14
Alignment explanation
Indices: 4887309--4887339 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
4887299 AAAAAGTCTC
*
4887309 AAAAATAAAAAGCA
1 AAAAAAAAAAAGCA
4887323 AAAAAAAAAAAGCA
1 AAAAAAAAAAAGCA
4887337 AAA
1 AAA
4887340 CAAAGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.84, C:0.06, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAAAAAAAAAGCA
Found at i:4889173 original size:43 final size:45
Alignment explanation
Indices: 4889112--4889207 Score: 126
Period size: 43 Copynumber: 2.2 Consensus size: 45
4889102 GAATAAGAAG
*
4889112 CTTTGAACTCTTAGATGTGAATCTCTAA-ATTT-TTAAATGTGAAAC
1 CTTTGAAC-CTTAGATGTGAAACTCTAAGATTTATTAAATGTG-AAC
*
4889157 CTTTGAA-CTTAGATGTGAAACTCTAAGATTTATTGAATGTGAAC
1 CTTTGAACCTTAGATGTGAAACTCTAAGATTTATTAAATGTGAAC
*
4889201 TTTTGAA
1 CTTTGAA
4889208 TTCAAAGGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
43 18 0.39
44 13 0.28
45 15 0.33
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (45 bp):
CTTTGAACCTTAGATGTGAAACTCTAAGATTTATTAAATGTGAAC
Found at i:4889592 original size:15 final size:15
Alignment explanation
Indices: 4889572--4889628 Score: 57
Period size: 15 Copynumber: 3.9 Consensus size: 15
4889562 TTGAAAATTC
4889572 TTGTGAATCTTTGAA
1 TTGTGAATCTTTGAA
*
4889587 TTGTGAACCTTTGAA
1 TTGTGAATCTTTGAA
**
4889602 TT-TCGAA-C-TCAAA
1 TTGT-GAATCTTTGAA
4889615 TTGTGAATCTTTGA
1 TTGTGAATCTTTGA
4889629 GTTTTCATTA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
13 8 0.24
14 4 0.12
15 21 0.64
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.42
Consensus pattern (15 bp):
TTGTGAATCTTTGAA
Found at i:4889918 original size:85 final size:85
Alignment explanation
Indices: 4889737--4889975 Score: 297
Period size: 85 Copynumber: 2.8 Consensus size: 85
4889727 AGAGGAGCTT
* * * *
4889737 TATTTATTTTTCAAAATTGTTGAGCCTCTGCTTAAATGAGCCTTATTTATTTTTTAAAGTTGTTA
1 TATTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTATTTATTTTTTAAAATTGTTA
* * *
4889802 AGCTTTTGCTTAGAAGAGCCT
66 AGCTTTT-CTTAGAAAAACCA
4889823 TATTTA-TTTTCTAAAGTTGTTGAGCCTCTGC-TAGAA-GAGCTTTATTTATTTTTTAAAATTGT
1 TATTTATTTTTC-AAAGTTGTTGAGCCTCTGCTTA-AAGGAGCTTTATTTATTTTTTAAAATTGT
*
4889885 TGAGCCTTTT-TTAGAAAAACCA
64 TAAG-CTTTTCTTAGAAAAACCA
* * * *
4889907 TATTTATTTTTCAAAGTCGTTGAACCTCTACTTAAAGGAGCTTTATTTATTTTTTAAAAGTCGTT
1 TATTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTATTTATTTTTTAAAA-TTGTT
4889972 AAGC
65 AAGC
4889976 CTGTGTTTAG
Statistics
Matches: 134, Mismatches: 12, Indels: 15
0.83 0.07 0.09
Matches are distributed among these distances:
84 33 0.25
85 64 0.48
86 37 0.28
ACGTcount: A:0.28, C:0.13, G:0.14, T:0.46
Consensus pattern (85 bp):
TATTTATTTTTCAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTTTATTTATTTTTTAAAATTGTTA
AGCTTTTCTTAGAAAAACCA
Found at i:4889967 original size:44 final size:44
Alignment explanation
Indices: 4889694--4890058 Score: 286
Period size: 43 Copynumber: 8.5 Consensus size: 44
4889684 TGAGGAGCCA
* * * *
4889694 TATTTA-TTTTTCAAAGTCGTTGAGCCTCT-ATATAGAGGAGCTT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCT-TAAAGGAGCTT
* * *
4889737 TATTTATTTTTCAAAA-TTGTTGAGCCTCTGCTTAAATGAGCCT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTT
* * * *
4889780 TATTTATTTTTT-AAAGTTGTTAAGCTTTTGCTTAGAA-GAGCCT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTA-AAGGAGCTT
*
4889823 TATTTATTTTCT-AAAGTTGTTGAGCCTCTGC-TAGAA-GAGCTT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTA-AAGGAGCTT
** * * **
4889865 TATTTATTTTTTAAAA-TTGTTGAGCCT-TTTTTAGAA-AAACCA
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTA-AAGGAGCTT
* * * *
4889907 TATTTA-TTTTTCAAAGTCGTTGAACCTCTACTTAAAGGAGCTT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTT
* * * * *
4889950 TATTTATTTTTTAAAAGTCGTTAAGCCTGTGTTTAGAGGAGCTT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTT
* * * * * * *
4889994 TGTTTATTTTTTAAAAATCGTTGAGCCTCTGTTTAGAGAAGCCT
1 TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTT
* *
4890038 TATTTATTTCTTGAAAGTTGT
1 TATTTATTTTTTAAAAGTTGT
4890059 GAACCCTTTA
Statistics
Matches: 262, Mismatches: 50, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
41 9 0.03
42 59 0.23
43 100 0.38
44 94 0.36
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.45
Consensus pattern (44 bp):
TATTTATTTTTTAAAAGTTGTTGAGCCTCTGCTTAAAGGAGCTT
Done.