Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 30 of 133
Found at i:6962045 original size:24 final size:25
Alignment explanation
Indices: 6962005--6962063 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
6961995 CTTCCCAAAC
6962005 CTTT-AGCTCTTCCCACATCTCGAA
1 CTTTCAGCTCTTCCCACATCTCGAA
*
6962029 CTTTCAGCTCTT-TCACATCTCGAA
1 CTTTCAGCTCTTCCCACATCTCGAA
* *
6962053 CCTTCGGCTCT
1 CTTTCAGCTCT
6962064 GATACCACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 24 0.77
25 7 0.23
ACGTcount: A:0.17, C:0.37, G:0.10, T:0.36
Consensus pattern (25 bp):
CTTTCAGCTCTTCCCACATCTCGAA
Found at i:6962097 original size:31 final size:31
Alignment explanation
Indices: 6962059--6962170 Score: 188
Period size: 31 Copynumber: 3.6 Consensus size: 31
6962049 CGAACCTTCG
* * *
6962059 GCTCTGATACCACTTATTGGGGAACACCACA
1 GCTCTGATACCATTTGTTGAGGAACACCACA
6962090 GCTCTGATACCATTTGTTGAGGAACACCACA
1 GCTCTGATACCATTTGTTGAGGAACACCACA
*
6962121 GCTCTGATACCATTTGTTGAGGAATACCACA
1 GCTCTGATACCATTTGTTGAGGAACACCACA
6962152 GCTCTGATACCATTTGTTG
1 GCTCTGATACCATTTGTTG
6962171 GGCTAAAAGC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 77 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (31 bp):
GCTCTGATACCATTTGTTGAGGAACACCACA
Found at i:6962743 original size:52 final size:52
Alignment explanation
Indices: 6962654--6962755 Score: 136
Period size: 52 Copynumber: 2.0 Consensus size: 52
6962644 TATAACCATA
*
6962654 CAAACTTGCCCATTAAGAATCCCTCTCTTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTACCCATTAAGAATCCCTCTCTTTTTAGAATTCTTCTCTTGCAAGT
* * *
6962706 CAAACTTACCTATTAAGAAT-CCTCT-TTCTCTTGGAATTCTTCTTTTGCAA
1 CAAACTTACCCATTAAGAATCCCTCTCTT-T-TTAGAATTCTTCTCTTGCAA
6962756 ATCTTTCTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
50 2 0.05
51 6 0.14
52 36 0.82
ACGTcount: A:0.25, C:0.25, G:0.09, T:0.40
Consensus pattern (52 bp):
CAAACTTACCCATTAAGAATCCCTCTCTTTTTAGAATTCTTCTCTTGCAAGT
Found at i:6962800 original size:11 final size:11
Alignment explanation
Indices: 6962784--6962814 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
6962774 GCAATATCTG
6962784 ACAAATCTCAA
1 ACAAATCTCAA
6962795 ACAAATCTCAA
1 ACAAATCTCAA
6962806 ACAAATCTC
1 ACAAATCTC
6962815 TTATGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:6970407 original size:23 final size:23
Alignment explanation
Indices: 6970364--6970407 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
6970354 CATTTTTATC
* *
6970364 TTTTTATTTTTGTTTTTAATATT
1 TTTTTATTTTTGTCTTAAATATT
6970387 TTTTTATTTTT-TACTTAAATA
1 TTTTTATTTTTGT-CTTAAATA
6970408 AATTTTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 1 0.06
23 17 0.94
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (23 bp):
TTTTTATTTTTGTCTTAAATATT
Found at i:6983294 original size:2 final size:2
Alignment explanation
Indices: 6983287--6983371 Score: 71
Period size: 2 Copynumber: 42.5 Consensus size: 2
6983277 ACATAAAGCA
* * * * *
6983287 AT AT AT AT AT AT AT AT AT AT AT GT AC AT AC AT AT GT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * * *
6983329 AT GT AC AT AT AT AC AC AC AT AT AT AT AT GT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6983371 A
1 A
6983372 GGCATATTTG
Statistics
Matches: 67, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 67 1.00
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (2 bp):
AT
Found at i:6986931 original size:18 final size:20
Alignment explanation
Indices: 6986908--6986951 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
6986898 AATATTTTTA
6986908 TTTAAA-ATTAAAATA-TAT
1 TTTAAATATTAAAATATTAT
6986926 TTTAAAATATTAAAATATTAT
1 TTT-AAATATTAAAATATTAT
6986947 TTTAA
1 TTTAA
6986952 TATGTATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 3 0.13
19 3 0.13
20 11 0.48
21 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TTTAAATATTAAAATATTAT
Found at i:6986949 original size:21 final size:20
Alignment explanation
Indices: 6986896--6986951 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
6986886 GAAGTTAATA
* *
6986896 AAAATATTTTTATTTAAAATT
1 AAAATATTATT-TTAAAAATT
6986917 AAAATA-TATTTTAAAATATT
1 AAAATATTATTTTAAAA-ATT
6986937 AAAATATTATTTTAA
1 AAAATATTATTTTAA
6986952 TATGTATAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.16
20 12 0.39
21 14 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
AAAATATTATTTTAAAAATT
Found at i:6992230 original size:15 final size:15
Alignment explanation
Indices: 6992210--6992238 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6992200 TAATAATGTA
6992210 AAGTTAGAAAATTAT
1 AAGTTAGAAAATTAT
6992225 AAGTTAGAAAATTA
1 AAGTTAGAAAATTA
6992239 CGTTGCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.14, T:0.31
Consensus pattern (15 bp):
AAGTTAGAAAATTAT
Found at i:6994257 original size:4 final size:4
Alignment explanation
Indices: 6994248--6994272 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
6994238 TTAGTCCGAA
6994248 CCAG CCAG CCAG CCAG CCAG CCAG C
1 CCAG CCAG CCAG CCAG CCAG CCAG C
6994273 GAACAATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.52, G:0.24, T:0.00
Consensus pattern (4 bp):
CCAG
Found at i:6994754 original size:2 final size:2
Alignment explanation
Indices: 6994747--6994777 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
6994737 TATTGCATTG
6994747 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6994778 ATAATGTCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6999564 original size:13 final size:13
Alignment explanation
Indices: 6999548--6999584 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
6999538 AATTCGAAAT
*
6999548 TTTTATAATTTTA
1 TTTTATAAATTTA
6999561 TTTTATAAAATTTA
1 TTTTAT-AAATTTA
6999575 TTTTATAAAT
1 TTTTATAAAT
6999585 ACAAATATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 12 0.55
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTATAAATTTA
Found at i:7000051 original size:4 final size:4
Alignment explanation
Indices: 7000035--7000068 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
7000025 CTTAGAAATG
*
7000035 TAAT TAGT TAAT TAAT TAAT TAAT TAAT TAAT TA
1 TAAT TAAT TAAT TAAT TAAT TAAT TAAT TAAT TA
7000069 CTTATAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (4 bp):
TAAT
Found at i:7000197 original size:2 final size:2
Alignment explanation
Indices: 7000190--7000222 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
7000180 GAAAGCAATT
7000190 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7000223 AAAGCATGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7001915 original size:12 final size:11
Alignment explanation
Indices: 7001893--7001922 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
7001883 AATAATTTTT
7001893 TAAAAAATATA
1 TAAAAAATATA
7001904 TAAAATAATATA
1 TAAAA-AATATA
7001916 TAAAAAA
1 TAAAAAA
7001923 AACTCCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
TAAAAAATATA
Found at i:7002244 original size:41 final size:41
Alignment explanation
Indices: 7002157--7002244 Score: 92
Period size: 41 Copynumber: 2.1 Consensus size: 41
7002147 TGAAATTTGT
* * *
7002157 TTTTATATATTTTACCTAAAAATCATATATATTATTAATATA
1 TTTTATATATTTTAACAAAAAAT-ATATATATTATAAATATA
*
7002199 -TTTATATATTTTAAGAAAAAAT-TAT-TATTATAAATAATTA
1 TTTTATATATTTTAACAAAAAATATATATATTATAAAT-A-TA
7002239 TTTTAT
1 TTTTAT
7002245 GTGAGTATTT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
38 9 0.23
39 4 0.10
40 2 0.05
41 24 0.62
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.51
Consensus pattern (41 bp):
TTTTATATATTTTAACAAAAAATATATATATTATAAATATA
Found at i:7006656 original size:17 final size:16
Alignment explanation
Indices: 7006624--7006666 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
7006614 TTTTTTAAAA
*
7006624 AAATTTTTATATATTAAG
1 AAATTTTT-TAAATT-AG
*
7006642 AAATTTTTTAAATTAT
1 AAATTTTTTAAATTAG
7006658 AAATTTTTT
1 AAATTTTTT
7006667 TCTTTTTGCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 10 0.43
17 5 0.22
18 8 0.35
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (16 bp):
AAATTTTTTAAATTAG
Found at i:7007454 original size:29 final size:27
Alignment explanation
Indices: 7007382--7007459 Score: 70
Period size: 29 Copynumber: 2.7 Consensus size: 27
7007372 ATTAATATTA
*
7007382 TATTTATAT-ATTATATTAATAAAGATAT
1 TATTTATATCA-TA-ATTAATAAAAATAT
*
7007410 TATTTAATATCTTAATTTAATAAAAATAT
1 TATTT-ATATCATAA-TTAATAAAAATAT
7007439 TATGTT-TATCCATAATTAATA
1 TAT-TTATAT-CATAATTAATA
7007460 TGTAATCCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
28 15 0.36
29 25 0.60
30 2 0.05
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.49
Consensus pattern (27 bp):
TATTTATATCATAATTAATAAAAATAT
Found at i:7007767 original size:12 final size:11
Alignment explanation
Indices: 7007750--7007780 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7007740 CCCAATTAGC
7007750 TTTTTTTTCTT
1 TTTTTTTTCTT
*
7007761 TTTTTTTTGTT
1 TTTTTTTTCTT
7007772 TTTTTTTTC
1 TTTTTTTTC
7007781 GTTCTTCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.90
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:7007818 original size:12 final size:12
Alignment explanation
Indices: 7007789--7007818 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7007779 TCGTTCTTCA
7007789 TTTTTTATTTTG
1 TTTTTTATTTTG
*
7007801 CTTTTTATTTTG
1 TTTTTTATTTTG
7007813 TTTTTT
1 TTTTTT
7007819 GTTTAAGTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.03, G:0.07, T:0.83
Consensus pattern (12 bp):
TTTTTTATTTTG
Found at i:7008185 original size:57 final size:55
Alignment explanation
Indices: 7008116--7008316 Score: 224
Period size: 59 Copynumber: 3.4 Consensus size: 55
7008106 TTGTGTAGGA
*
7008116 AAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTCAAAAATTTTAATTTCGAAG
1 AAAATTGATACTTTCAACTTTTCC-CAAAATATTTTT-AAAAATTTTAATTTCGAGG
* *
7008173 AAAATTGATACTTTTAACTTTCAACATTTCCCCAAAATATTTTTGAAAATTTTAATTTCGAGG
1 AAAATTG--A----T-ACTTTCAAC-TTTTCCCAAAATATTTTTAAAAATTTTAATTTCGAGG
*
7008236 AAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAAACTTTAATTTCG-GG
1 AAAATTGATACTTTCAAC-TTTTCCC-AAAATA-TTTTTA-AAAATTTTAATTTCGAGG
7008294 AAAAATTGATACTTTCAACTTTT
1 -AAAATTGATACTTTCAACTTTT
7008317 TCTAAAAAAA
Statistics
Matches: 125, Mismatches: 7, Indels: 23
0.81 0.05 0.15
Matches are distributed among these distances:
56 15 0.12
57 14 0.11
58 11 0.09
59 33 0.26
61 1 0.01
63 25 0.20
64 21 0.17
65 5 0.04
ACGTcount: A:0.37, C:0.14, G:0.07, T:0.42
Consensus pattern (55 bp):
AAAATTGATACTTTCAACTTTTCCCAAAATATTTTTAAAAATTTTAATTTCGAGG
Found at i:7008244 original size:63 final size:63
Alignment explanation
Indices: 7008125--7008315 Score: 236
Period size: 63 Copynumber: 3.1 Consensus size: 63
7008115 AAAAATTGAT
* * *
7008125 ACTTTCAACTTTTCCTCAAAATATTTTTCA-AAAATTTTAATTTCGAAGAAAATTGATACTTTTA
1 ACTTTCAAC-TTTCCCCAAAATATTTTT-AGAAAATTTTAATTTCGAGGAAAATTGATACTTTCA
7008189 ACTTTCAACATTTCCCCAAAATATTTTT-GAAAATTTTAATTTCGAGGAAAATTGATACTTTCA
1 ACTTTCAAC-TTTCCCCAAAATATTTTTAGAAAATTTTAATTTCGAGGAAAATTGATACTTTCA
* *
7008252 AC-TT----TTTCCCAAAAATATTTTTTAGAAAACTTTAATTTCG-GGAAAAATTGATACTTTCA
1 ACTTTCAACTTTCCCCAAAATA-TTTTTAGAAAATTTTAATTTCGAGG-AAAATTGATACTTTCA
7008311 ACTTT
1 ACTTT
7008316 TTCTAAAAAA
Statistics
Matches: 116, Mismatches: 6, Indels: 14
0.85 0.04 0.10
Matches are distributed among these distances:
57 12 0.10
58 7 0.06
59 33 0.28
60 2 0.02
62 2 0.02
63 34 0.29
64 26 0.22
ACGTcount: A:0.37, C:0.15, G:0.07, T:0.42
Consensus pattern (63 bp):
ACTTTCAACTTTCCCCAAAATATTTTTAGAAAATTTTAATTTCGAGGAAAATTGATACTTTCA
Found at i:7008300 original size:59 final size:57
Alignment explanation
Indices: 7008189--7008394 Score: 229
Period size: 59 Copynumber: 3.5 Consensus size: 57
7008179 GATACTTTTA
* *
7008189 ACTTTCAAC-ATTTCCCCAAAATA-TTTTTGAAAATTTTAATTTCGAGG-AAAATTGAT
1 ACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAA-TTTAATTTCG-GGAAAAATTGAT
7008245 ACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAAACTTTAATTTCGGGAAAAATTGAT
1 ACTTTCAACTTTTTCCCAAAAATATTTTTT-GAAAA-TTTAATTTCGGGAAAAATTGAT
** * ** ***
7008304 ACTTTCAACTTTTTCTAAAAAAAAACCTTTTTTTGAAAATTTTTTTTTAAGAAAAATTGAT
1 ACTTTCAACTTTTTC-CCAAAAATA---TTTTTTGAAAATTTAATTTCGGGAAAAATTGAT
7008365 ACTTTCAACTTTTTCCCAAAAATATTTTTT
1 ACTTTCAACTTTTTCCCAAAAATATTTTTT
7008395 TTGGATTTTA
Statistics
Matches: 128, Mismatches: 14, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
56 9 0.07
57 18 0.14
58 7 0.05
59 39 0.30
60 12 0.09
61 32 0.25
62 5 0.04
63 6 0.05
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (57 bp):
ACTTTCAACTTTTTCCCAAAAATATTTTTTGAAAATTTAATTTCGGGAAAAATTGAT
Found at i:7008360 original size:120 final size:120
Alignment explanation
Indices: 7008114--7008394 Score: 322
Period size: 120 Copynumber: 2.3 Consensus size: 120
7008104 TTTTGTGTAG
* *
7008114 GAAAAATTGATACTTTCAAC-TTTTCCTC-AAAATATTTTTCAAAAATTTTAATTTCGAAGAAAA
1 GAAAAATTGATACTTTCAACTTTTTCC-CAAAAATATTTTTTAAAAACTTTAATTTCGAAGAAAA
* ***** *
7008177 TTGATACTTTTAACTTTCAACATTTCCCCAAAATATTTTTGAAAATTTTAATTTCGA
65 TTGATACTTTCAACTTTCAACA-TAAAAAAAAATATTTTTGAAAATTTTAATTTCAA
* *
7008234 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAGAAAACTTTAATTTCG-GGAAAA
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTA-AAAACTTTAATTTCGAAG-AAA
** * * *
7008298 ATTGATACTTTCAACTTT-TTC-TAAAAAAAAACCTTTTTTTGAAAATTTT-TTTTTAA
64 ATTGATACTTTCAACTTTCAACATAAAAAAAAA--TATTTTTGAAAATTTTAATTTCAA
7008354 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTT
1 GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTT
7008395 TTGGATTTTA
Statistics
Matches: 138, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
119 5 0.04
120 64 0.46
121 35 0.25
122 34 0.25
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (120 bp):
GAAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTAAAAACTTTAATTTCGAAGAAAAT
TGATACTTTCAACTTTCAACATAAAAAAAAATATTTTTGAAAATTTTAATTTCAA
Found at i:7008447 original size:12 final size:10
Alignment explanation
Indices: 7008412--7008537 Score: 80
Period size: 12 Copynumber: 11.9 Consensus size: 10
7008402 TTATTTAAAG
7008412 AAAATAAAAT
1 AAAATAAAAT
7008422 --AATAAAAT
1 AAAATAAAAT
7008430 AAAATAAAAGT
1 AAAATAAAA-T
7008441 GAAAATAAAAAT
1 -AAAAT-AAAAT
7008453 AAAGATAAAAAT
1 AAA-AT-AAAAT
* *
7008465 AAAAGAATAT
1 AAAATAAAAT
* * *
7008475 TAAACAAATCT
1 AAAATAAA-AT
7008486 AATAATAATAAT
1 AA-AATAA-AAT
7008498 AATAATAAAAT
1 AA-AATAAAAT
7008509 AAATATATAAA-
1 AAA-ATA-AAAT
7008520 AAAATAAAAT
1 AAAATAAAAT
7008530 AAAA-AAAA
1 AAAATAAAA
7008538 CTTGGAACGG
Statistics
Matches: 95, Mismatches: 9, Indels: 25
0.74 0.07 0.19
Matches are distributed among these distances:
8 8 0.08
9 7 0.07
10 24 0.25
11 18 0.19
12 33 0.35
13 5 0.05
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (10 bp):
AAAATAAAAT
Found at i:7008529 original size:17 final size:16
Alignment explanation
Indices: 7008489--7008537 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
7008479 CAAATCTAAT
*
7008489 AATAATAATAATAATAA
1 AATAA-AATAATAAAAA
7008506 AAT-AAATATATAAAAA
1 AATAAAATA-ATAAAAA
7008522 AATAAAATAA-AAAAA
1 AATAAAATAATAAAAA
7008537 A
1 A
7008538 CTTGGAACGG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
15 10 0.34
16 11 0.38
17 8 0.28
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (16 bp):
AATAAAATAATAAAAA
Found at i:7009341 original size:12 final size:12
Alignment explanation
Indices: 7009324--7009356 Score: 57
Period size: 12 Copynumber: 2.7 Consensus size: 12
7009314 TCTTCAGCTG
7009324 AAAAAAAATCAA
1 AAAAAAAATCAA
7009336 AAAAAAAATCAA
1 AAAAAAAATCAA
7009348 ATAAAAAAA
1 A-AAAAAAA
7009357 ATATTAATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.65
13 7 0.35
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (12 bp):
AAAAAAAATCAA
Found at i:7009439 original size:14 final size:14
Alignment explanation
Indices: 7009422--7009470 Score: 52
Period size: 14 Copynumber: 3.6 Consensus size: 14
7009412 AAAATAATAC
7009422 TAGATAAATTATAA
1 TAGATAAATTATAA
7009436 TAGAT-AA--ATAA
1 TAGATAAATTATAA
7009447 TA-ATAAATATATAA
1 TAGATAAAT-TATAA
7009461 CTAGATAAAT
1 -TAGATAAAT
7009471 AAAATATATA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
10 2 0.07
11 8 0.28
13 2 0.07
14 9 0.31
15 2 0.07
16 6 0.21
ACGTcount: A:0.59, C:0.02, G:0.06, T:0.33
Consensus pattern (14 bp):
TAGATAAATTATAA
Found at i:7009452 original size:17 final size:17
Alignment explanation
Indices: 7009407--7009452 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 17
7009397 AGATATTAAA
*
7009407 AGATAAA-AATAATACT
1 AGATAAATAATAATAAT
7009423 AGATAAAT--T-ATAAT
1 AGATAAATAATAATAAT
7009437 AGATAAATAATAATAA
1 AGATAAATAATAATAA
7009453 ATATATAACT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
14 12 0.48
15 1 0.04
16 8 0.32
17 4 0.16
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (17 bp):
AGATAAATAATAATAAT
Found at i:7009457 original size:23 final size:23
Alignment explanation
Indices: 7009425--7009482 Score: 64
Period size: 26 Copynumber: 2.4 Consensus size: 23
7009415 ATAATACTAG
7009425 ATAAATTATAA-TAGATAAATAATA
1 ATAAA-TATAACTAGATAAATAA-A
7009449 ATAAATATATAACTAGATAAATAAA
1 AT-AA-ATATAACTAGATAAATAAA
*
7009474 ATATATATA
1 ATAAATATA
7009483 TAAATATCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
23 5 0.17
24 3 0.10
25 10 0.33
26 12 0.40
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (23 bp):
ATAAATATAACTAGATAAATAAA
Found at i:7009459 original size:25 final size:25
Alignment explanation
Indices: 7009425--7009485 Score: 90
Period size: 25 Copynumber: 2.5 Consensus size: 25
7009415 ATAATACTAG
7009425 ATAAAT-TATAA-TAGATAAATAATA
1 ATAAATATATAACTAGATAAATAA-A
7009449 ATAAATATATAACTAGATAAATAAA
1 ATAAATATATAACTAGATAAATAAA
*
7009474 ATATATATATAA
1 ATAAATATATAA
7009486 ATATCAACAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
24 6 0.18
25 17 0.50
26 11 0.32
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.33
Consensus pattern (25 bp):
ATAAATATATAACTAGATAAATAAA
Found at i:7009470 original size:16 final size:15
Alignment explanation
Indices: 7009407--7009471 Score: 52
Period size: 16 Copynumber: 4.6 Consensus size: 15
7009397 AGATATTAAA
* *
7009407 AGATAAAAATAATACT
1 AGATAAATAT-ATAAT
7009423 AGATAAAT-TATAAT
1 AGATAAATATATAAT
7009437 AGAT--A-A-ATAAT
1 AGATAAATATATAAT
7009448 A-ATAAATATATAACT
1 AGATAAATATATAA-T
7009463 AGATAAATA
1 AGATAAATA
7009472 AAATATATAT
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
10 2 0.05
11 6 0.15
12 2 0.05
13 1 0.03
14 12 0.30
15 3 0.08
16 14 0.35
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (15 bp):
AGATAAATATATAAT
Found at i:7009588 original size:21 final size:20
Alignment explanation
Indices: 7009525--7009630 Score: 72
Period size: 21 Copynumber: 5.0 Consensus size: 20
7009515 TAATAAAGAT
7009525 ATATATATTAATAAATAAT-AA
1 ATATATA-TAATAAA-AATAAA
* * **
7009546 ATACATAAAATACAAAGGAAA
1 ATATATATAATA-AAAATAAA
7009567 ATATATATAATATAAAATAAAA
1 ATATATATAATA-AAAAT-AAA
* *
7009589 ATAAAAATAATAAAATATAAA
1 ATATATATAATAAAA-ATAAA
*
7009610 ATATAAATACA-AAAAATAAA
1 ATATATATA-ATAAAAATAAA
7009630 A
1 A
7009631 AGCAAAAATG
Statistics
Matches: 68, Mismatches: 12, Indels: 11
0.75 0.13 0.12
Matches are distributed among these distances:
20 11 0.16
21 41 0.60
22 16 0.24
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (20 bp):
ATATATATAATAAAAATAAA
Found at i:7009598 original size:22 final size:21
Alignment explanation
Indices: 7009564--7009631 Score: 77
Period size: 21 Copynumber: 3.2 Consensus size: 21
7009554 AATACAAAGG
*
7009564 AAAATATATATAATATAAAATA
1 AAAATATAAATAA-ATAAAATA
*
7009586 AAAATAAAAAT-AATAAAATA
1 AAAATATAAATAAATAAAATA
7009606 TAAAATATAAATACAA-AAAATA
1 -AAAATATAAATA-AATAAAATA
7009628 AAAA
1 AAAA
7009632 GCAAAAATGG
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
20 8 0.20
21 15 0.38
22 15 0.38
23 2 0.05
ACGTcount: A:0.75, C:0.01, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAATATAAATAAATAAAATA
Found at i:7009602 original size:15 final size:17
Alignment explanation
Indices: 7009571--7009615 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
7009561 AGGAAAATAT
* *
7009571 ATATAATATAAAATAAA
1 ATATAAAATATAATAAA
7009588 A-ATAAAA-ATAATAAA
1 ATATAAAATATAATAAA
7009603 ATATAAAATATAA
1 ATATAAAATATAA
7009616 ATACAAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
15 8 0.33
16 11 0.46
17 5 0.21
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
ATATAAAATATAATAAA
Found at i:7009605 original size:27 final size:27
Alignment explanation
Indices: 7009537--7009630 Score: 100
Period size: 28 Copynumber: 3.4 Consensus size: 27
7009527 ATATATTAAT
* * **
7009537 AAATAATAAATACATAAAATACAAAGGA
1 AAATAATAAA-ATATAAAATAAAAATAA
*
7009565 AAATATATATAATATAAAATAAAAATAA
1 AAATA-ATAAAATATAAAATAAAAATAA
*
7009593 AAATAATAAAATATAAAATATAAATACA
1 AAATAATAAAATATAAAATAAAAATA-A
7009621 AAA-AATAAAA
1 AAATAATAAAA
7009631 AGCAAAAATG
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
27 26 0.46
28 27 0.47
29 4 0.07
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (27 bp):
AAATAATAAAATATAAAATAAAAATAA
Found at i:7009631 original size:6 final size:7
Alignment explanation
Indices: 7009564--7009630 Score: 68
Period size: 7 Copynumber: 9.6 Consensus size: 7
7009554 AATACAAAGG
7009564 AAAATAT
1 AAAATAT
7009571 ATATAATAT
1 A-A-AATAT
7009580 AAAATA-
1 AAAATAT
7009586 AAAATA-
1 AAAATAT
7009592 AAAATAAT
1 AAAAT-AT
7009600 AAAATAT
1 AAAATAT
7009607 AAAATAT
1 AAAATAT
*
7009614 -AAATAC
1 AAAATAT
*
7009620 AAAAAAT
1 AAAATAT
7009627 AAAA
1 AAAA
7009631 AGCAAAAATG
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
6 16 0.31
7 23 0.44
8 7 0.13
9 6 0.12
ACGTcount: A:0.75, C:0.01, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATAT
Found at i:7009637 original size:27 final size:27
Alignment explanation
Indices: 7009537--7009630 Score: 75
Period size: 27 Copynumber: 3.4 Consensus size: 27
7009527 ATATATTAAT
* **
7009537 AAATAAT-AAATACATAAAATACAAAGGA
1 AAATAATAAAATAC--AAAATAAAAATAA
* *
7009565 AAATATATATAATATAAAATAAAAATAA
1 AAATA-ATAAAATACAAAATAAAAATAA
* *
7009593 AAATAATAAAATATAAAATATAAATACA
1 AAATAATAAAATACAAAATAAAAATA-A
7009621 AAA-AATAAAA
1 AAATAATAAAA
7009631 AGCAAAAATG
Statistics
Matches: 56, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
27 26 0.46
28 24 0.43
29 2 0.04
30 4 0.07
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.22
Consensus pattern (27 bp):
AAATAATAAAATACAAAATAAAAATAA
Found at i:7009940 original size:18 final size:19
Alignment explanation
Indices: 7009904--7009942 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7009894 TCATTCTTGG
* *
7009904 TTTTTTTTTGTTTACTTTT
1 TTTTTTTTTGTCTAATTTT
7009923 TTTTTTTTTG-CTAATTTT
1 TTTTTTTTTGTCTAATTTT
7009941 TT
1 TT
7009943 ATATTTAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.08, C:0.05, G:0.05, T:0.82
Consensus pattern (19 bp):
TTTTTTTTTGTCTAATTTT
Found at i:7012192 original size:60 final size:60
Alignment explanation
Indices: 7012060--7012220 Score: 213
Period size: 60 Copynumber: 2.7 Consensus size: 60
7012050 GCTTTTGTGC
* ** *
7012060 AGAAAAATTGATACTTTCAACTTTTTTCT-AAAATA--TTTTTTAGAAATTTTAATTTTG
1 AGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAGAAAGCTTAATTTTA
*
7012117 AGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTGGAAAGCTT-ATTTTCA
1 AGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAGAAAGCTTAATTTT-A
* * *
7012177 AGGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTT
1 AGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTT
7012221 TTTGAATTTT
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
57 28 0.30
58 6 0.07
59 5 0.05
60 53 0.58
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.46
Consensus pattern (60 bp):
AGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTTAGAAAGCTTAATTTTA
Found at i:7012257 original size:12 final size:11
Alignment explanation
Indices: 7012240--7012312 Score: 103
Period size: 12 Copynumber: 6.5 Consensus size: 11
7012230 TATTTAAAGG
7012240 AAATAAAATAA
1 AAATAAAATAA
7012251 TAAATAAAATAA
1 -AAATAAAATAA
7012263 AAATAAAGATAA
1 AAATAAA-ATAA
*
7012275 AAAT-AAAGAA
1 AAATAAAATAA
7012285 AAATAAAATAA
1 AAATAAAATAA
7012296 AAATAAAAATAA
1 AAAT-AAAATAA
7012308 AAATA
1 AAATA
7012313 TTAAACAATT
Statistics
Matches: 56, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
10 7 0.12
11 19 0.34
12 30 0.54
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (11 bp):
AAATAAAATAA
Found at i:7012267 original size:6 final size:6
Alignment explanation
Indices: 7012240--7012312 Score: 84
Period size: 6 Copynumber: 12.8 Consensus size: 6
7012230 TATTTAAAGG
* *
7012240 AAAT-A AAATAA TAAAT-A AAATAA AAATAA AGATAA AAAT-- AAAGAA
1 AAATAA AAATAA -AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
7012285 AAAT-A AAATAA AAATAA AAATAA AAATA
1 AAATAA AAATAA AAATAA AAATAA AAATA
7012313 TTAAACAATT
Statistics
Matches: 58, Mismatches: 4, Indels: 11
0.79 0.05 0.15
Matches are distributed among these distances:
4 3 0.05
5 13 0.22
6 38 0.66
7 4 0.07
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (6 bp):
AAATAA
Found at i:7012286 original size:27 final size:27
Alignment explanation
Indices: 7012256--7012308 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
7012246 AATAATAAAT
*
7012256 AAAATAAAAATAAAGATAAAAATAAAGA
1 AAAAT-AAAATAAAAATAAAAATAAAGA
7012284 AAAATAAAATAAAAATAAAAATAAA
1 AAAATAAAATAAAAATAAAAATAAA
7012309 AATATTAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 19 0.79
28 5 0.21
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.15
Consensus pattern (27 bp):
AAAATAAAATAAAAATAAAAATAAAGA
Found at i:7013289 original size:14 final size:15
Alignment explanation
Indices: 7013245--7013358 Score: 89
Period size: 14 Copynumber: 7.8 Consensus size: 15
7013235 AATCAGATAA
* *
7013245 ATAAAAATACTAACAG
1 ATAAATATA-TAATAG
*
7013261 ATAAATAAAATAATAG
1 ATAAAT-ATATAATAG
*
7013277 ATAAAT-TATAATAT
1 ATAAATATATAATAG
7013291 ATAAATATATAAATA-
1 ATAAATATAT-AATAG
7013306 AT-AATATATAAATAG
1 ATAAATATAT-AATAG
*
7013321 ATAAATA-ATAATAA
1 ATAAATATATAATAG
*
7013335 ATACATATAT-ATA-
1 ATAAATATATAATAG
7013348 AT-AATATATAA
1 ATAAATATATAA
7013359 ATAGCTAAGT
Statistics
Matches: 83, Mismatches: 8, Indels: 17
0.77 0.07 0.16
Matches are distributed among these distances:
12 6 0.07
13 3 0.04
14 37 0.45
15 11 0.13
16 24 0.29
17 2 0.02
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (15 bp):
ATAAATATATAATAG
Found at i:7013289 original size:22 final size:22
Alignment explanation
Indices: 7013268--7013475 Score: 145
Period size: 22 Copynumber: 9.8 Consensus size: 22
7013258 CAGATAAATA
*
7013268 AAAT-AATAGATAAATTATAAT
1 AAATAAATAGATAAATAATAAT
* *
7013289 ATATAAATATATAAATAATAAT
1 AAATAAATAGATAAATAATAAT
*
7013311 ATATAAATAGATAAATAATAAT
1 AAATAAATAGATAAATAATAAT
* *
7013333 AAATACAT--ATATATAATAAT
1 AAATAAATAGATAAATAATAAT
* * * *
7013353 ATATAAATAGCTAAGTAATACT
1 AAATAAATAGATAAATAATAAT
* *
7013375 AAATATATATGA-ACAT-ATAA-
1 AAATAAATA-GATAAATAATAAT
7013395 ATAAT-AATA-AT-AATAATAAT
1 A-AATAAATAGATAAATAATAAT
7013415 AAAATAAATA-AGTAAATAATAAAT
1 -AAATAAATAGA-TAAATAAT-AAT
*
7013439 AAAT-AATA-ATGAATAATAAT
1 AAATAAATAGATAAATAATAAT
*
7013459 GAATAAAATA-ATAAATA
1 AAAT-AAATAGATAAATA
7013476 CATGAAATAA
Statistics
Matches: 148, Mismatches: 24, Indels: 29
0.74 0.12 0.14
Matches are distributed among these distances:
18 3 0.02
19 4 0.03
20 30 0.20
21 22 0.15
22 75 0.51
23 11 0.07
24 3 0.02
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (22 bp):
AAATAAATAGATAAATAATAAT
Found at i:7013427 original size:59 final size:56
Alignment explanation
Indices: 7013261--7013473 Score: 156
Period size: 56 Copynumber: 3.7 Consensus size: 56
7013251 ATACTAACAG
* * *
7013261 ATAAATAAAATAATAGATAAATTATAAT-AT-ATAA-ATATATAAAT-AATAA-TATATAA
1 ATAAAT-AAATAACA-ATAAATAATAATAATAATAATA-ATA-AAATAAATAAGTAAAT-A
* * **
7013317 ATAGATAAATAATAATAAATACAT-ATATATAATAAT-ATATAAATAGCTAAGT-AATA
1 ATAAATAAATAACAATAAATA-ATAATA-ATAATAATAATA-AAATAAATAAGTAAATA
*
7013373 CTAAATATATATGAACATATAAATAATAATAATAATAATAATAAAATAAATAAGTAAATA
1 ATAAATA-A-AT-AACA-ATAAATAATAATAATAATAATAATAAAATAAATAAGTAAATA
* *
7013433 ATAAATAAATAATAATGAATAATAATGAATAA-AATAATAAA
1 ATAAATAAATAACAATAAATAATAAT-AATAATAATAATAAA
7013474 TACATGAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 30
0.75 0.08 0.17
Matches are distributed among these distances:
54 8 0.06
55 10 0.08
56 41 0.32
57 18 0.14
58 5 0.04
59 24 0.19
60 23 0.18
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (56 bp):
ATAAATAAATAACAATAAATAATAATAATAATAATAATAAAATAAATAAGTAAATA
Found at i:7013457 original size:56 final size:58
Alignment explanation
Indices: 7013264--7013540 Score: 130
Period size: 64 Copynumber: 4.9 Consensus size: 58
7013254 CTAACAGATA
* * * *
7013264 AATAA-AATAATAGATAAATTATAAT-ATATAAATATATAAAT-AATAATATATAAAT
1 AATAATAATAATATATAAATAATAATAATATAAATAAATAAATAAATAATAAATAAAT
* ** * *
7013319 AGATAAATAATAATAAATACATATATATAATAATATATAAATAGCTAAGT-AATACTAAATATAT
1 A-AT-AATAATAATATATA-A-ATA-ATAAT-A-ATATAAATAAATAAATAAATAATAAATA-A-
7013383 AT
57 AT
* *
7013385 GAACATATAAATAATA-AT-AATAATAATAATA-AAATAAATAAGTAAATAATAAATAAAT
1 -AATA-AT-AATAATATATAAATAATAATAATATAAATAAATAAATAAATAATAAATAAAT
* * *
7013443 AATAATGAATAATA-ATGAATAA-AAT-A-ATAAATACATGAAATAAA-AA-AAATATA-
1 AATAAT-AATAATATATAAATAATAATAATATAAATAAAT-AAATAAATAATAAATAAAT
* *
7013496 AAT-ATAA-AA-ATATAAAT-ATAA-AAGATACA-AAATAAA-AAA-AATAAA
1 AATAATAATAATATATAAATAATAATAATATAAATAAATAAATAAATAATAAA
7013541 ATGGGACTAC
Statistics
Matches: 180, Mismatches: 19, Indels: 52
0.72 0.08 0.21
Matches are distributed among these distances:
48 5 0.03
49 8 0.04
50 13 0.07
51 6 0.03
52 2 0.01
53 3 0.02
54 7 0.04
55 11 0.06
56 22 0.12
57 10 0.06
58 12 0.07
59 12 0.07
60 15 0.08
61 6 0.03
62 5 0.03
63 3 0.02
64 23 0.13
65 2 0.01
66 7 0.04
67 8 0.04
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.29
Consensus pattern (58 bp):
AATAATAATAATATATAAATAATAATAATATAAATAAATAAATAAATAATAAATAAAT
Found at i:7013514 original size:14 final size:14
Alignment explanation
Indices: 7013487--7013533 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 14
7013477 ATGAAATAAA
7013487 AAAAATATAAATAT
1 AAAAATATAAATAT
7013501 AAAAATATAAATAT
1 AAAAATATAAATAT
*
7013515 AAAAGATACAAA-AT
1 AAAA-ATATAAATAT
7013529 AAAAA
1 AAAAA
7013534 AAATAAAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
13 1 0.03
14 24 0.77
15 6 0.19
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (14 bp):
AAAAATATAAATAT
Found at i:7013530 original size:20 final size:19
Alignment explanation
Indices: 7013484--7013531 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
7013474 TACATGAAAT
*
7013484 AAAAA-AAATATAAATATA
1 AAAAATAAATATAAAGATA
7013502 AAAATATAAATATAAAAGATA
1 AAAA-ATAAATAT-AAAGATA
*
7013523 CAAAATAAA
1 AAAAATAAA
7013532 AAAAATAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 4 0.16
19 1 0.04
20 11 0.44
21 9 0.36
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (19 bp):
AAAAATAAATATAAAGATA
Found at i:7013541 original size:14 final size:14
Alignment explanation
Indices: 7013460--7013542 Score: 67
Period size: 15 Copynumber: 5.6 Consensus size: 14
7013450 AATAATAATG
7013460 AATAAAATAATAAATA
1 AATAAAATAA-AAA-A
* *
7013476 CATGAAATAAAAAA
1 AATAAAATAAAAAA
7013490 AATATAAATATAAAAA
1 AATA-AAATA-AAAAA
* *
7013506 TATAAATATAAAAGA
1 AATAAA-ATAAAAAA
* *
7013521 TACAAAATAAAAAA
1 AATAAAATAAAAAA
7013535 AATAAAAT
1 AATAAAAT
7013543 GGGACTACTC
Statistics
Matches: 54, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
14 16 0.30
15 19 0.35
16 19 0.35
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (14 bp):
AATAAAATAAAAAA
Found at i:7013707 original size:13 final size:13
Alignment explanation
Indices: 7013689--7013713 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7013679 CTTTGTGAGA
7013689 ATTTAATTTTTTT
1 ATTTAATTTTTTT
7013702 ATTTAATTTTTT
1 ATTTAATTTTTT
7013714 GCTTTTCTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
ATTTAATTTTTTT
Found at i:7013806 original size:9 final size:9
Alignment explanation
Indices: 7013792--7013840 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
7013782 TCTTAATTTT
7013792 TTTTTTTCA
1 TTTTTTTCA
7013801 TTTTTTTCA
1 TTTTTTTCA
*
7013810 -TTCTTTCAA
1 TTTTTTTC-A
7013819 TTTTTTTCA
1 TTTTTTTCA
*
7013828 CTTTTTTC-
1 TTTTTTTCA
7013836 TTTTT
1 TTTTT
7013841 CACTTTTTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
8 10 0.29
9 18 0.53
10 6 0.18
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:7015142 original size:23 final size:23
Alignment explanation
Indices: 7015114--7015157 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
7015104 TTAATCATGT
7015114 AAAATACTAAAAAT-AAATAAATA
1 AAAATAC-AAAAATAAAATAAATA
*
7015137 AAAATACAAGAATAAAATAAA
1 AAAATACAAAAATAAAATAAA
7015158 ATACCAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.75, C:0.05, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAATACAAAAATAAAATAAATA
Found at i:7016544 original size:17 final size:18
Alignment explanation
Indices: 7016511--7016553 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
7016501 AATTTTAATT
7016511 TTTAGTTTTTATTTTTAA
1 TTTAGTTTTTATTTTTAA
7016529 TTTA-TTTTT-TTGTTTAA
1 TTTAGTTTTTATT-TTTAA
*
7016546 TTTTGTTT
1 TTTAGTTT
7016554 CGGTCAAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 2 0.09
17 13 0.59
18 7 0.32
ACGTcount: A:0.16, C:0.00, G:0.07, T:0.77
Consensus pattern (18 bp):
TTTAGTTTTTATTTTTAA
Found at i:7017616 original size:29 final size:26
Alignment explanation
Indices: 7017578--7017642 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 26
7017568 TTTTTTTTCC
* * *
7017578 TTATATTTTTCTATTTTGATTTTATTT
1 TTATTTTTTTCTAGTTTTA-TTTATTT
7017605 TTAGTTTATTTTCTAGTTTTATTTATTT
1 TTA-TTT-TTTTCTAGTTTTATTTATTT
7017633 TTATTTTTTT
1 TTATTTTTTT
7017643 GTTTTAATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
26 4 0.12
27 6 0.18
28 12 0.36
29 11 0.33
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (26 bp):
TTATTTTTTTCTAGTTTTATTTATTT
Found at i:7017639 original size:23 final size:23
Alignment explanation
Indices: 7017609--7017661 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
7017599 TTATTTTTAG
*
7017609 TTTATTTTCTAGTTTTATTTATT
1 TTTATTTTCTAGTTTTAATTATT
* *
7017632 TTTATTTTTTTGTTTTAATTATT
1 TTTATTTTCTAGTTTTAATTATT
7017655 TATTATT
1 T-TTATT
7017662 GAGTGATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 21 0.81
24 5 0.19
ACGTcount: A:0.19, C:0.02, G:0.04, T:0.75
Consensus pattern (23 bp):
TTTATTTTCTAGTTTTAATTATT
Found at i:7017641 original size:17 final size:17
Alignment explanation
Indices: 7017597--7017640 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
7017587 TCTATTTTGA
7017597 TTTTATTTTTAGTTTAT
1 TTTTATTTTTAGTTTAT
*
7017614 TTTCTAGTTTTA-TTTAT
1 TTT-TATTTTTAGTTTAT
7017631 TTTTATTTTT
1 TTTTATTTTT
7017641 TTGTTTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 11 0.46
18 7 0.29
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (17 bp):
TTTTATTTTTAGTTTAT
Found at i:7017806 original size:15 final size:16
Alignment explanation
Indices: 7017781--7017817 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
7017771 TTTTTACTTG
7017781 ATTATTTATTAAT-TAC
1 ATTA-TTATTAATATAC
7017797 ATTATTATTAATATAC
1 ATTATTATTAATATAC
7017813 -TTATT
1 ATTATT
7017818 TGTGTGATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
15 13 0.65
16 7 0.35
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (16 bp):
ATTATTATTAATATAC
Found at i:7017838 original size:41 final size:41
Alignment explanation
Indices: 7017784--7017939 Score: 217
Period size: 41 Copynumber: 3.9 Consensus size: 41
7017774 TTACTTGATT
* *
7017784 ATTTAT-TAATTACATTATTATTAATATACTTATTTGTGTG
1 ATTTATATAATTACATGATTATTAATATATTTATTTGTGTG
* *
7017824 ATTTATATTATTACATGATTATTAATATGTTTATTTGTGTG
1 ATTTATATAATTACATGATTATTAATATATTTATTTGTGTG
* * *
7017865 ATTTATATAATTGCATGATTATTAATATATTTATTTATATG
1 ATTTATATAATTACATGATTATTAATATATTTATTTGTGTG
**
7017906 ATTTAT-TAATTGTATGATTATTAATATATTTATT
1 ATTTATATAATTACATGATTATTAATATATTTATT
7017940 AGTATTTATT
Statistics
Matches: 105, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
40 33 0.31
41 72 0.69
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (41 bp):
ATTTATATAATTACATGATTATTAATATATTTATTTGTGTG
Found at i:7017911 original size:13 final size:13
Alignment explanation
Indices: 7017838--7017940 Score: 65
Period size: 12 Copynumber: 7.8 Consensus size: 13
7017828 ATATTATTAC
7017838 ATGA-TTATTAAT
1 ATGATTTATTAAT
**
7017850 ATG-TTTATTTGT
1 ATGATTTATTAAT
*
7017862 GTGATTTATATAAT
1 ATGATTTAT-TAAT
7017876 -TGCATGATTATTAAT
1 ATG-AT--TTATTAAT
*
7017891 AT-ATTTATTTAT
1 ATGATTTATTAAT
7017903 ATGATTTATTAAT
1 ATGATTTATTAAT
7017916 -TGTATGATTATTAAT
1 ATG-AT--TTATTAAT
7017931 AT-ATTTATTA
1 ATGATTTATTA
7017941 GTATTTATTG
Statistics
Matches: 72, Mismatches: 7, Indels: 24
0.70 0.07 0.23
Matches are distributed among these distances:
12 28 0.39
13 18 0.25
14 8 0.11
15 12 0.17
16 6 0.08
ACGTcount: A:0.34, C:0.01, G:0.10, T:0.55
Consensus pattern (13 bp):
ATGATTTATTAAT
Found at i:7018052 original size:16 final size:16
Alignment explanation
Indices: 7018006--7018089 Score: 64
Period size: 16 Copynumber: 5.2 Consensus size: 16
7017996 CATAATACTT
*
7018006 TTATATGTTTGCATGA
1 TTATATATTTGCATGA
* *
7018022 -TA-ATCTTTGCGTGA
1 TTATATATTTGCATGA
*
7018036 TTATATGTTTGCATGA
1 TTATATATTTGCATGA
* * *
7018052 TATTTAATATCTACATGA
1 T-TAT-ATATTTGCATGA
*
7018070 TTATATATTGGCATGA
1 TTATATATTTGCATGA
7018086 TTAT
1 TTAT
7018090 TTAATTATTA
Statistics
Matches: 52, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
14 10 0.19
15 4 0.08
16 24 0.46
17 4 0.08
18 10 0.19
ACGTcount: A:0.29, C:0.08, G:0.15, T:0.48
Consensus pattern (16 bp):
TTATATATTTGCATGA
Found at i:7018084 original size:34 final size:35
Alignment explanation
Indices: 7018033--7018107 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
7018023 AATCTTTGCG
* *
7018033 TGATTATATGTTTGCATGA-TATTTAA-TATCTACA
1 TGATTATATATTGGCATGATTATTTAATTAT-TACA
7018067 TGATTATATATTGGCATGATTATTTAATTATTACA
1 TGATTATATATTGGCATGATTATTTAATTATTACA
7018102 TGATTA
1 TGATTA
7018108 CATGATTTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
34 17 0.46
35 17 0.46
36 3 0.08
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (35 bp):
TGATTATATATTGGCATGATTATTTAATTATTACA
Found at i:7021115 original size:18 final size:17
Alignment explanation
Indices: 7021082--7021126 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
7021072 ATTACATGAT
7021082 TATTGTATTTTATTGAA
1 TATTGTATTTTATTGAA
7021099 T-TGTGTATTTGTATTGAA
1 TAT-TGTATTT-TATTGAA
7021117 TATTGTATTT
1 TATTGTATTT
7021127 CATTATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 1 0.04
17 8 0.32
18 15 0.60
19 1 0.04
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.60
Consensus pattern (17 bp):
TATTGTATTTTATTGAA
Found at i:7023227 original size:25 final size:24
Alignment explanation
Indices: 7023199--7023251 Score: 97
Period size: 25 Copynumber: 2.2 Consensus size: 24
7023189 AACATCTAGG
7023199 TAGAGTACCTATCAATTATATTTCA
1 TAGAGTACCTATCAATTATA-TTCA
7023224 TAGAGTACCTATCAATTATATTCA
1 TAGAGTACCTATCAATTATATTCA
7023248 TAGA
1 TAGA
7023252 ATGCTATTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 8 0.29
25 20 0.71
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.38
Consensus pattern (24 bp):
TAGAGTACCTATCAATTATATTCA
Found at i:7032365 original size:35 final size:35
Alignment explanation
Indices: 7032326--7032417 Score: 157
Period size: 35 Copynumber: 2.6 Consensus size: 35
7032316 CAAGTTGATA
*
7032326 AATGAATAACGACATAACAACACCACAATTTGAGG
1 AATGAATAACGACAGAACAACACCACAATTTGAGG
*
7032361 AATGAATAATGACAGAACAACACCACAATTTGAGG
1 AATGAATAACGACAGAACAACACCACAATTTGAGG
*
7032396 AATGAATAACGACGGAACAACA
1 AATGAATAACGACAGAACAACA
7032418 TTGCGAGTTG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.50, C:0.18, G:0.16, T:0.15
Consensus pattern (35 bp):
AATGAATAACGACAGAACAACACCACAATTTGAGG
Found at i:7032404 original size:105 final size:107
Alignment explanation
Indices: 7032285--7032492 Score: 231
Period size: 105 Copynumber: 2.0 Consensus size: 107
7032275 ACACTGTAAA
* ** * * *
7032285 TTGAGAAATAAATAATGACAAAATGACACTGCAAGTTGATAAATGAATAACGACATAACAACACC
1 TTGAGAAATAAATAACGACAAAACAACACTGCAAGTTGAGAAATGAATAAAGACAAAACAACACC
* * *
7032350 ACAATTTGAGGAATGA-ATAATGA-CAGAACAACACCACAAT
66 ACAAGTTGAGGAATAACAAAATGATCAGAACAACACCACAAT
* * ** * * * *
7032390 TTGAGGAATGAATAACGACGGAACAACATTGCGAGTTGAGAAATGAATAAAGACAAAACGACATC
1 TTGAGAAATAAATAACGACAAAACAACACTGCAAGTTGAGAAATGAATAAAGACAAAACAACACC
* *
7032455 GCAAGTTGAGGAATAACAAAATGATCGGAACAACACCA
66 ACAAGTTGAGGAATAACAAAATGATCAGAACAACACCA
7032493 AAAGTCATAA
Statistics
Matches: 82, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
105 64 0.78
106 6 0.07
107 12 0.15
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.17
Consensus pattern (107 bp):
TTGAGAAATAAATAACGACAAAACAACACTGCAAGTTGAGAAATGAATAAAGACAAAACAACACC
ACAAGTTGAGGAATAACAAAATGATCAGAACAACACCACAAT
Found at i:7032429 original size:35 final size:35
Alignment explanation
Indices: 7032315--7032468 Score: 146
Period size: 35 Copynumber: 4.4 Consensus size: 35
7032305 AAATGACACT
** * * *
7032315 GCAAGTTGATAAATGAATAACGACATAACAACACC
1 GCAAGTTGAGGAATGAATAAAGACAGAACAACATC
* * * *
7032350 ACAATTTGAGGAATGAATAATGACAGAACAACACC
1 GCAAGTTGAGGAATGAATAAAGACAGAACAACATC
* * * * *
7032385 ACAATTTGAGGAATGAATAACGACGGAACAACATT
1 GCAAGTTGAGGAATGAATAAAGACAGAACAACATC
* * * *
7032420 GCGAGTTGAGAAATGAATAAAGACAAAACGACATC
1 GCAAGTTGAGGAATGAATAAAGACAGAACAACATC
7032455 GCAAGTTGAGGAAT
1 GCAAGTTGAGGAAT
7032469 AACAAAATGA
Statistics
Matches: 98, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
35 98 1.00
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.18
Consensus pattern (35 bp):
GCAAGTTGAGGAATGAATAAAGACAGAACAACATC
Found at i:7032465 original size:70 final size:69
Alignment explanation
Indices: 7032285--7032468 Score: 188
Period size: 70 Copynumber: 2.6 Consensus size: 69
7032275 ACACTGTAAA
* * ** *
7032285 TTGAGAAATAAATAATGACAAAATGACACTGCAAGTTGATAAATGAATAACGACATAACAACACC
1 TTGAGAAATGAATAATGACAAAACGACAC-GCAAGTTGAGGAATGAATAACGACAGAACAACACC
*
7032350 ACAAT
65 ACAAG
* * * * * * **
7032355 TTGAGGAATGAATAATGACAGAACAACACCACAATTTGAGGAATGAATAACGACGGAACAACATT
1 TTGAGAAATGAATAATGACAAAACGACA-CGCAAGTTGAGGAATGAATAACGACAGAACAACACC
* *
7032420 GCGAG
65 ACAAG
*
7032425 TTGAGAAATGAATAAAGACAAAACGACATCGCAAGTTGAGGAAT
1 TTGAGAAATGAATAATGACAAAACGACA-CGCAAGTTGAGGAAT
7032469 AACAAAATGA
Statistics
Matches: 90, Mismatches: 23, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
70 89 0.99
71 1 0.01
ACGTcount: A:0.48, C:0.15, G:0.19, T:0.18
Consensus pattern (69 bp):
TTGAGAAATGAATAATGACAAAACGACACGCAAGTTGAGGAATGAATAACGACAGAACAACACCA
CAAG
Found at i:7032623 original size:35 final size:35
Alignment explanation
Indices: 7032534--7032733 Score: 103
Period size: 35 Copynumber: 5.6 Consensus size: 35
7032524 CACCGTAAGT
* * **
7032534 TGAATAACGATGGAATGAAACTGCAAGTTAAGAAA
1 TGAATAATGATGGAATGACACCACAAGTTAAGAAA
* * * * * *
7032569 TAAATAATGACGGATTGACACCACAATTTGAGGAA
1 TGAATAATGATGGAATGACACCACAAGTTAAGAAA
* ** *
7032604 TGAATAATGATGGAATGACACTATGAGTTGAGAAA
1 TGAATAATGATGGAATGACACCACAAGTTAAGAAA
* ** * * *
7032639 TGAATAAAGACAGAACGACACCGCAAGTTAAGGAA
1 TGAATAATGATGGAATGACACCACAAGTTAAGAAA
* * * * * * *
7032674 TAACAAAATGGCTAGAATGACACCAAAAGTCAAAAAA
1 TGA-ATAAT-GATGGAATGACACCACAAGTTAAGAAA
* * *
7032711 TAAATAAAGACTAGAATGACACC
1 TGAATAATGA-TGGAATGACACC
7032734 GTAAATTGAA
Statistics
Matches: 120, Mismatches: 42, Indels: 5
0.72 0.25 0.03
Matches are distributed among these distances:
35 80 0.67
36 18 0.15
37 22 0.18
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.18
Consensus pattern (35 bp):
TGAATAATGATGGAATGACACCACAAGTTAAGAAA
Found at i:7032659 original size:70 final size:70
Alignment explanation
Indices: 7032534--7032674 Score: 156
Period size: 70 Copynumber: 2.0 Consensus size: 70
7032524 CACCGTAAGT
* * * ** * *
7032534 TGAATAACGATGGAATGAAACTGCAAGTTAAGAAATAAATAATGACGGATTGACACCACAATTTG
1 TGAATAACGATGGAATGAAACTACAAGTTAAGAAATAAATAAAGACAGAACGACACCACAAGTTA
7032599 AGGAA
66 AGGAA
* * ** * * *
7032604 TGAATAATGATGGAATGACACTATGAGTTGAGAAATGAATAAAGACAGAACGACACCGCAAGTTA
1 TGAATAACGATGGAATGAAACTACAAGTTAAGAAATAAATAAAGACAGAACGACACCACAAGTTA
7032669 AGGAA
66 AGGAA
7032674 T
1 T
7032675 AACAAAATGG
Statistics
Matches: 57, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
70 57 1.00
ACGTcount: A:0.45, C:0.11, G:0.23, T:0.21
Consensus pattern (70 bp):
TGAATAACGATGGAATGAAACTACAAGTTAAGAAATAAATAAAGACAGAACGACACCACAAGTTA
AGGAA
Found at i:7032925 original size:34 final size:34
Alignment explanation
Indices: 7032876--7033050 Score: 154
Period size: 34 Copynumber: 5.2 Consensus size: 34
7032866 TAATCTAGGT
* * * *
7032876 TTAAATATTTTTTTGAAGGCTAGTTAAATTGGGC
1 TTAAATCTTTCTTTGAAGGCTAGCTAAACTGGGC
* ** * * *
7032910 TTAAATCTTTCTTTGAAGGCCAATTACACTAGGT
1 TTAAATCTTTCTTTGAAGGCTAGCTAAACTGGGC
* * ** *
7032944 TTAAATATTTCATTGGTGGCTAGCTAATCTGGGC
1 TTAAATCTTTCTTTGAAGGCTAGCTAAACTGGGC
* * *
7032978 TTAAATCTGTCTTCGAAGGCTAGCTGAACTGGGC
1 TTAAATCTTTCTTTGAAGGCTAGCTAAACTGGGC
* **
7033012 -TAAATCTTTCTTTGAAGGCCAGCTAAACTAAGC
1 TTAAATCTTTCTTTGAAGGCTAGCTAAACTGGGC
7033045 TTAAAT
1 TTAAAT
7033051 TCAATCTTAT
Statistics
Matches: 107, Mismatches: 33, Indels: 2
0.75 0.23 0.01
Matches are distributed among these distances:
33 27 0.25
34 80 0.75
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (34 bp):
TTAAATCTTTCTTTGAAGGCTAGCTAAACTGGGC
Found at i:7032979 original size:68 final size:68
Alignment explanation
Indices: 7032870--7032997 Score: 177
Period size: 68 Copynumber: 1.9 Consensus size: 68
7032860 GACAGCTAAT
** * * *
7032870 CTAGGTTTAAATATTTTTTTGAAGGCTAGTTAAATTGGGCTTAAATCTTTCTTTGAAGGCCAATT
1 CTAGGTTTAAATATTTCATTGAAGGCTAGCTAAATTGGGCTTAAATCTGTCTTCGAAGGCCAATT
7032935 ACA
66 ACA
**
7032938 CTAGGTTTAAATATTTCATTGGTGGCTAGCT-AATCTGGGCTTAAATCTGTCTTCGAAGGC
1 CTAGGTTTAAATATTTCATTGAAGGCTAGCTAAAT-TGGGCTTAAATCTGTCTTCGAAGGC
7032998 TAGCTGAACT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
67 3 0.06
68 49 0.94
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (68 bp):
CTAGGTTTAAATATTTCATTGAAGGCTAGCTAAATTGGGCTTAAATCTGTCTTCGAAGGCCAATT
ACA
Found at i:7033529 original size:106 final size:106
Alignment explanation
Indices: 7033407--7033616 Score: 411
Period size: 106 Copynumber: 2.0 Consensus size: 106
7033397 ATAAATGCCA
7033407 CTACTAATATTTTTTCTAGGAAATAGACACCATGATGCAAATGCAAATTTCTTTCTTATGGTGCA
1 CTACTAATATTTTTTCTAGGAAATAGACACCATGATGCAAATGCAAATTTCTTTCTTATGGTGCA
7033472 AATGCAAATGTCTTATAAAAGCGTAAATGCAAGTGATACCC
66 AATGCAAATGTCTTATAAAAGCGTAAATGCAAGTGATACCC
*
7033513 CTACTAATATTTTTTCTAGGAAATAGACACCATGATGCAAATGCAAATTTCTTTTTTATGGTGCA
1 CTACTAATATTTTTTCTAGGAAATAGACACCATGATGCAAATGCAAATTTCTTTCTTATGGTGCA
7033578 AATGCAAATGTCTTATAAAAGCGTAAATGCAAGTGATAC
66 AATGCAAATGTCTTATAAAAGCGTAAATGCAAGTGATAC
7033617 AAATGTGAAT
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 103 1.00
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (106 bp):
CTACTAATATTTTTTCTAGGAAATAGACACCATGATGCAAATGCAAATTTCTTTCTTATGGTGCA
AATGCAAATGTCTTATAAAAGCGTAAATGCAAGTGATACCC
Found at i:7033948 original size:35 final size:35
Alignment explanation
Indices: 7033800--7033979 Score: 104
Period size: 34 Copynumber: 5.3 Consensus size: 35
7033790 CTAATCTATA
* * * * * *
7033800 CTTAA-ATCTTTCTTCGAAGGCCAGCTAAATTGGG
1 CTTAATATTTTTCTTTGAAAGCCAACTAAACTAGG
* *
7033834 CTTAA-ATCTTTT-TTTAAAAGCCAACTAAACTGGG
1 CTTAATAT-TTTTCTTTGAAAGCCAACTAAACTAGG
** * ** * * *
7033868 CTTAATA-TTTTAATGGCGAG-TAGCTAATCTAGG
1 CTTAATATTTTTCTTTGAAAGCCAACTAAACTAGG
* *
7033901 CTTAA-ATCTTTCTTT-AAAGGCCAACTAAACTAGA
1 CTTAATATTTTTCTTTGAAA-GCCAACTAAACTAGG
* * *
7033935 CTTAATATTTTTCTTTGAAAGCTAACTAAATTGGG
1 CTTAATATTTTTCTTTGAAAGCCAACTAAACTAGG
7033970 CTTAATATTT
1 CTTAATATTT
7033980 CATTGACAGC
Statistics
Matches: 108, Mismatches: 30, Indels: 15
0.71 0.20 0.10
Matches are distributed among these distances:
32 2 0.02
33 23 0.21
34 46 0.43
35 34 0.31
36 3 0.03
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.37
Consensus pattern (35 bp):
CTTAATATTTTTCTTTGAAAGCCAACTAAACTAGG
Found at i:7033999 original size:102 final size:102
Alignment explanation
Indices: 7033785--7034011 Score: 280
Period size: 102 Copynumber: 2.2 Consensus size: 102
7033775 ATCTTTAGAG
** * * * * *
7033785 GCTAGCTAATCTATACTTAAATCTTTCTTCGAAGGCCAGCTAAATTGGGCTTAAATCTTTTTTTA
1 GCTAGCTAATCTAGGCTTAAATCTTTCTTCAAAGGCCAACTAAACTAGACTTAAATCTTTTTTTA
* *
7033850 AAAGCCAACTAAACTGGGCTTAATATTTTAATGGCGA
66 AAAGCCAACTAAACTGGGCTTAATATTTCAATGACGA
*
7033887 G-TAGCTAATCTAGGCTTAAATCTTTCTTTAAAGGCCAACTAAACTAGACTTAATAT-TTTTCTT
1 GCTAGCTAATCTAGGCTTAAATCTTTCTTCAAAGGCCAACTAAACTAGACTTAA-ATCTTTT-TT
* * * *
7033950 TGAAAGCTAACTAAATTGGGCTTAATATTTCATTGAC-A
64 TAAAAGCCAACTAAACTGGGCTTAATATTTCAATGACGA
*
7033988 GCTAGCTAATCTGGGCTTAAATCT
1 GCTAGCTAATCTAGGCTTAAATCT
7034012 CATATCATAT
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
101 50 0.47
102 57 0.53
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (102 bp):
GCTAGCTAATCTAGGCTTAAATCTTTCTTCAAAGGCCAACTAAACTAGACTTAAATCTTTTTTTA
AAAGCCAACTAAACTGGGCTTAATATTTCAATGACGA
Found at i:7034003 original size:33 final size:34
Alignment explanation
Indices: 7033824--7034007 Score: 94
Period size: 33 Copynumber: 5.4 Consensus size: 34
7033814 CGAAGGCCAG
** * *
7033824 CTAAATTGGGCTTAA-ATCTTTTTTTAAAAGCCAA
1 CTAAATTGGGCTTAATAT-TTTCATTGAAAGCTAA
* * * ** *
7033858 CTAAACTGGGCTTAATATTTTAATGGCGAG-TAG
1 CTAAATTGGGCTTAATATTTTCATTGAAAGCTAA
* * *
7033891 CT-AATCTAGGCTTAA-ATCTTTC-TTTAAAGGCCAA
1 CTAAAT-TGGGCTTAATAT-TTTCATTGAAA-GCTAA
* * * *
7033925 CTAAACTAGACTTAATATTTTTCTTTGAAAGCTAA
1 CTAAATTGGGCTTAATA-TTTTCATTGAAAGCTAA
* *
7033960 CTAAATTGGGCTTAATA-TTTCATTGACAGCTAG
1 CTAAATTGGGCTTAATATTTTCATTGAAAGCTAA
7033993 CT-AATCTGGGCTTAA
1 CTAAAT-TGGGCTTAA
7034008 ATCTCATATC
Statistics
Matches: 112, Mismatches: 28, Indels: 21
0.70 0.17 0.13
Matches are distributed among these distances:
32 9 0.08
33 39 0.35
34 31 0.28
35 27 0.24
36 6 0.05
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (34 bp):
CTAAATTGGGCTTAATATTTTCATTGAAAGCTAA
Found at i:7034139 original size:17 final size:17
Alignment explanation
Indices: 7034112--7034148 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
7034102 TGTCGAACTA
7034112 TTTTTCTCTTTTTTCTTT
1 TTTTTCTCTTTTTT-TTT
7034130 TTTTTC-CTTTTTTTTT
1 TTTTTCTCTTTTTTTTT
7034146 TTT
1 TTT
7034149 GCATTTTTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.32
17 7 0.37
18 6 0.32
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (17 bp):
TTTTTCTCTTTTTTTTT
Found at i:7034197 original size:12 final size:12
Alignment explanation
Indices: 7034182--7034222 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7034172 TTCTTTTTTC
7034182 TTTTCTCTCTTT
1 TTTTCTCTCTTT
*
7034194 TTTTCTTTCTTT
1 TTTTCTCTCTTT
7034206 TTTT-TGC-CTTT
1 TTTTCT-CTCTTT
7034217 TTTTCT
1 TTTTCT
7034223 TTTTCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (12 bp):
TTTTCTCTCTTT
Found at i:7034402 original size:24 final size:24
Alignment explanation
Indices: 7034374--7034437 Score: 92
Period size: 24 Copynumber: 2.6 Consensus size: 24
7034364 TGCAGATACC
7034374 ATGATGCAAATGTAAATGTCTTAT
1 ATGATGCAAATGTAAATGTCTTAT
*
7034398 ATGATGCAAATGAAAATGTCTTAT
1 ATGATGCAAATGTAAATGTCTTAT
**
7034422 ACAAATGCAAATGTAA
1 A-TGATGCAAATGTAA
7034438 GTGATGCAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
24 24 0.69
25 11 0.31
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (24 bp):
ATGATGCAAATGTAAATGTCTTAT
Found at i:7035806 original size:5 final size:5
Alignment explanation
Indices: 7035785--7035850 Score: 50
Period size: 5 Copynumber: 13.6 Consensus size: 5
7035775 CACCCATTCA
* * *
7035785 TTTT- TTTTC TTTT- TTTTC TTTTC TTTTC ATTTC ATTTA TTCTTC TTCTT-
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TT-TTC TT-TTC
*
7035834 TTTTC ATTT- TTTTC TTT
1 TTTTC TTTTC TTTTC TTT
7035851 CTCCTTTCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
4 13 0.25
5 31 0.61
6 7 0.14
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:7035829 original size:21 final size:19
Alignment explanation
Indices: 7035803--7035850 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 19
7035793 CTTTTTTTTC
7035803 TTTTCTTTTCATTTCATTT
1 TTTTCTTTTCATTTCATTT
*
7035822 ATTCTTCTTCTT-TTTTCATTT
1 -TT-TTCTT-TTCATTTCATTT
7035843 TTTTCTTT
1 TTTTCTTT
7035851 CTCCTTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 1 0.04
19 5 0.20
20 4 0.16
21 13 0.52
22 2 0.08
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCTTTTCATTTCATTT
Found at i:7039612 original size:20 final size:21
Alignment explanation
Indices: 7039587--7039628 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7039577 TTAAAAATGT
7039587 ATGTAAAAGA-TCAAATGAAA
1 ATGTAAAAGATTCAAATGAAA
* *
7039607 ATGTAAAATATTCAAATTAAA
1 ATGTAAAAGATTCAAATGAAA
7039628 A
1 A
7039629 ATTTTTGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.60, C:0.05, G:0.10, T:0.26
Consensus pattern (21 bp):
ATGTAAAAGATTCAAATGAAA
Found at i:7048673 original size:43 final size:44
Alignment explanation
Indices: 7048576--7048679 Score: 122
Period size: 43 Copynumber: 2.4 Consensus size: 44
7048566 ATCTCTGAGT
*
7048576 ATAATCTTCAAGACCTCTGGGCATGATTTGTAAGACATCTAGGC
1 ATAATCTTCAAGACCTCTGAGCATGATTTGTAAGACATCTAGGC
** * * *
7048620 CCAATCTTCAAAACCTCT-AGCATGATTTGTCAGACCTGC-AGGC
1 ATAATCTTCAAGACCTCTGAGCATGATTTGTAAGACAT-CTAGGC
*
7048663 ATAATTTTCAAGACCTC
1 ATAATCTTCAAGACCTC
7048680 CAGACATAAT
Statistics
Matches: 49, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
43 33 0.67
44 16 0.33
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (44 bp):
ATAATCTTCAAGACCTCTGAGCATGATTTGTAAGACATCTAGGC
Found at i:7048687 original size:22 final size:21
Alignment explanation
Indices: 7048626--7048711 Score: 59
Period size: 22 Copynumber: 4.0 Consensus size: 21
7048616 AGGCCCAATC
* * *
7048626 TTCAAAACCTCTAGCATGATT
1 TTCAAGACCTCCAGCATAATT
*
7048647 TGTC-AGACCTGCAGGCATAATT
1 T-TCAAGACCTCCA-GCATAATT
7048669 TTCAAGACCTCCAGACATAATCT
1 TTCAAGACCTCCAG-CATAAT-T
* *
7048692 AT-AAGACCTTCGAGCATAAT
1 TTCAAGACC-TCCAGCATAAT
7048712 CTCATAAAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
21 10 0.19
22 36 0.69
23 6 0.12
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (21 bp):
TTCAAGACCTCCAGCATAATT
Found at i:7049265 original size:21 final size:21
Alignment explanation
Indices: 7049195--7049265 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
7049185 TTTTGAGAGA
* *
7049195 GAATCTTTGAATCTTGGATAT
1 GAATCTTTAAATCTTAGATAT
* * * *
7049216 GAATCTCTAAGATTTTTAAATAC
1 GAATCTTTAA-A-TCTTAGATAT
7049239 GAATCTTTAAATCCTT-GATAT
1 GAATCTTTAAAT-CTTAGATAT
7049260 GAATCT
1 GAATCT
7049266 AAAAAACTTA
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
21 18 0.49
22 4 0.11
23 15 0.41
ACGTcount: A:0.34, C:0.13, G:0.13, T:0.41
Consensus pattern (21 bp):
GAATCTTTAAATCTTAGATAT
Found at i:7049862 original size:44 final size:44
Alignment explanation
Indices: 7049779--7049863 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 44
7049769 AACCTAGAAG
* * * *
7049779 TTTTGGATGTGAATCCCTAAAAGCTTCAATTACGAATCTTTGAA
1 TTTTGGATGTGAATCCCTAAAAACTTAAATGAAGAATCTTTGAA
* *
7049823 TTTTGGATGTGAATCTCTAAAATATTTAAATGAAG-ATCTTT
1 TTTTGGATGTGAATCCCTAAAA-ACTTAAATGAAGAATCTTT
7049864 AAAACTTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 27 0.79
45 7 0.21
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (44 bp):
TTTTGGATGTGAATCCCTAAAAACTTAAATGAAGAATCTTTGAA
Found at i:7049906 original size:24 final size:23
Alignment explanation
Indices: 7049829--7049909 Score: 67
Period size: 22 Copynumber: 3.5 Consensus size: 23
7049819 TGAATTTTGG
* * *
7049829 ATGTGAATCTCTAAAATATTTAA
1 ATGTAAATCTTTAAAAAATTTAA
* *
7049852 ATG-AAGATCTTT-AAAACTTTAG
1 ATGTAA-ATCTTTAAAAAATTTAA
*
7049874 GTGTAAATCTTTAAAAAATTTTAA
1 ATGTAAATCTTTAAAAAA-TTTAA
*
7049898 ATGTGAATCTTT
1 ATGTAAATCTTT
7049910 GAAATCTTTT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
22 16 0.36
23 14 0.32
24 14 0.32
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (23 bp):
ATGTAAATCTTTAAAAAATTTAA
Found at i:7049936 original size:19 final size:19
Alignment explanation
Indices: 7049899--7050015 Score: 119
Period size: 19 Copynumber: 6.1 Consensus size: 19
7049889 AAATTTTAAA
7049899 TGTGAATCTTTGAAATCTTT
1 TGTGAATCTTTG-AATCTTT
7049919 TGTGAATCTTTGAATCTTT
1 TGTGAATCTTTGAATCTTT
**
7049938 TACGAATCTTTGAAATCTTT
1 TGTGAATCTTTG-AATCTTT
**
7049958 TGCAAATCTTTGAATCTTT
1 TGTGAATCTTTGAATCTTT
* ** *
7049977 TGTAAATCTTAAAATTTTT
1 TGTGAATCTTTGAATCTTT
*
7049996 TATGAA-CATTTGAATCTTT
1 TGTGAATC-TTTGAATCTTT
7050015 T
1 T
7050016 CCCTTGATTT
Statistics
Matches: 82, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
18 1 0.01
19 52 0.63
20 29 0.35
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (19 bp):
TGTGAATCTTTGAATCTTT
Found at i:7049950 original size:39 final size:39
Alignment explanation
Indices: 7049902--7049977 Score: 134
Period size: 39 Copynumber: 1.9 Consensus size: 39
7049892 TTTTAAATGT
**
7049902 GAATCTTTGAAATCTTTTGTGAATCTTTGAATCTTTTAC
1 GAATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTTAC
7049941 GAATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTT
1 GAATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTT
7049978 GTAAATCTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.26, C:0.13, G:0.12, T:0.49
Consensus pattern (39 bp):
GAATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTTAC
Found at i:7049985 original size:39 final size:39
Alignment explanation
Indices: 7049903--7049986 Score: 123
Period size: 39 Copynumber: 2.2 Consensus size: 39
7049893 TTTAAATGTG
** *
7049903 AATCTTTGAAATCTTTTGTGAATCTTTGAATCTTTTACG
1 AATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTTACA
**
7049942 AATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTTGTA
1 AATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTTACA
7049981 AATCTT
1 AATCTT
7049987 AAAATTTTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.27, C:0.13, G:0.11, T:0.49
Consensus pattern (39 bp):
AATCTTTGAAATCTTTTGCAAATCTTTGAATCTTTTACA
Found at i:7052899 original size:19 final size:17
Alignment explanation
Indices: 7052854--7052901 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
7052844 AACTTAATTT
*
7052854 TTTTATTATTTAAAAAA
1 TTTTATTATATAAAAAA
* *
7052871 TTTTATTATACATAAAA
1 TTTTATTATATAAAAAA
7052888 TTTTATTATATAAA
1 TTTTATTATATAAA
7052902 GATATTCAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTATTATATAAAAAA
Found at i:7054105 original size:17 final size:17
Alignment explanation
Indices: 7054083--7054115 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7054073 AGTACTTTTT
*
7054083 AATCTAATTATAAAAAA
1 AATCTAATAATAAAAAA
7054100 AATCTAATAATAAAAA
1 AATCTAATAATAAAAA
7054116 TTCATTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (17 bp):
AATCTAATAATAAAAAA
Found at i:7054296 original size:20 final size:20
Alignment explanation
Indices: 7054273--7054310 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7054263 ATAAATTAAT
7054273 TAAAATTA-TATATTTAAAGA
1 TAAAATTATTA-ATTTAAAGA
*
7054293 TAAATTTATTAATTTAAA
1 TAAAATTATTAATTTAAA
7054311 ATTTTATAGG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.88
21 2 0.12
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
TAAAATTATTAATTTAAAGA
Found at i:7054788 original size:13 final size:14
Alignment explanation
Indices: 7054770--7054798 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7054760 ATTTTGAAAA
7054770 AAATAAAT-TTTTT
1 AAATAAATGTTTTT
7054783 AAATAAATGTTTTT
1 AAATAAATGTTTTT
7054797 AA
1 AA
7054799 TAATAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (14 bp):
AAATAAATGTTTTT
Found at i:7057344 original size:65 final size:65
Alignment explanation
Indices: 7057235--7057363 Score: 179
Period size: 65 Copynumber: 2.0 Consensus size: 65
7057225 AGGATTATTC
* * * *
7057235 AAAGCCTTAAATAATACCTTCTCAATTTTGAAAGAGCTTATTTAAGGTGTTTTTCGATAAAAAAA
1 AAAGCCTTAAATAATACCTTCTCAATTTTGAAAGAGCTTATTTAAAGTATTTTTCAACAAAAAAA
* * *
7057300 AAAGACCTTAAATAATACCTT-TTAATTTTGAAGGAGTTTATTTAAAGTATTTTTCAACAAAAAA
1 AAAG-CCTTAAATAATACCTTCTCAATTTTGAAAGAGCTTATTTAAAGTATTTTTCAACAAAAAA
7057364 TGTCTTAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
65 40 0.71
66 16 0.29
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.36
Consensus pattern (65 bp):
AAAGCCTTAAATAATACCTTCTCAATTTTGAAAGAGCTTATTTAAAGTATTTTTCAACAAAAAAA
Found at i:7070494 original size:80 final size:79
Alignment explanation
Indices: 7070362--7070610 Score: 274
Period size: 80 Copynumber: 3.2 Consensus size: 79
7070352 AGAAACACCA
* * * ** * * *
7070362 TTCAGCGAACCATTCAGTATACGATTCAGCTTTCCAAAATCATGCAAAACCATTCAGCAAAATAA
1 TTCAGCAAACCATTCAGCATACGATTCAACCCTCCAATATCATACAATACCATTCAGCAAAA-AA
7070427 TATCAGACAACAAGG
65 TATCAGACAACAAGG
* * * * * * *
7070442 TTCAACAAACCATTCGGCATATGATTCAGTCCC-CTAATATCATACAATACCATTCAGTAATACA
1 TTCAGCAAACCATTCAGCATACGATTCA-ACCCTCCAATATCATACAATACCATTCAGCAA-AAA
*
7070506 ATATCATACATA-AAGG
64 ATATCAGACA-ACAAGG
*
7070522 TTCAGCAAACCATTCAGCATACGATTCAACCCTCCAATATCATACAATACCATTCAGCAAAAAAA
1 TTCAGCAAACCATTCAGCATACGATTCAACCCTCCAATATCATACAATACCATTCAGCAAAAAAT
7070587 ATCAG---ACAAGG
66 ATCAGACAACAAGG
7070598 TTCAGCAAACCAT
1 TTCAGCAAACCAT
7070611 AATATTTAAG
Statistics
Matches: 140, Mismatches: 24, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
75 1 0.01
76 17 0.12
79 10 0.07
80 109 0.78
81 3 0.02
ACGTcount: A:0.41, C:0.25, G:0.10, T:0.23
Consensus pattern (79 bp):
TTCAGCAAACCATTCAGCATACGATTCAACCCTCCAATATCATACAATACCATTCAGCAAAAAAT
ATCAGACAACAAGG
Found at i:7080331 original size:34 final size:32
Alignment explanation
Indices: 7080245--7080332 Score: 79
Period size: 34 Copynumber: 2.7 Consensus size: 32
7080235 TCTTACCAGC
* * *
7080245 AAACGCCACTAGATAGTAGCA-TTTTTCATAC
1 AAACACCACTAGATAGTGGCATTTTTTCATAA
* * * *
7080276 AAACACCACCAAAGCAATGGCATTTTTCTCATAA
1 AAACACCACTAGA-TAGTGGCATTTTT-TCATAA
7080310 AAACACCACTAGATTAGTGGCAT
1 AAACACCACTAGA-TAGTGGCAT
7080333 CTCAAAGATA
Statistics
Matches: 42, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
31 10 0.24
32 5 0.12
33 4 0.10
34 23 0.55
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (32 bp):
AAACACCACTAGATAGTGGCATTTTTTCATAA
Found at i:7080437 original size:134 final size:133
Alignment explanation
Indices: 7080257--7080637 Score: 412
Period size: 134 Copynumber: 2.8 Consensus size: 133
7080247 ACGCCACTAG
* * ** *
7080257 ATAGTAGCATTTTTC-A-TACAAACACCACCAAAGCAATGGCATTTTTCTCATAAAAACACCACT
1 ATAGCAGCA-TTTTCAATTACAAATACCACCAAAGCAATGGTGTTTTTCTCATAAAAATACCACT
* * * *
7080320 AGATTAGTGGCATCTCAAAGATAGAAATGTCACTAATATGGAGGCATTTTCAGATACAAACATCT
65 A-ATTAGTGGCGTCTCAAAGATAGAAATGCCACTAATATGGAGGCATTTTCAAATACAAACACCT
7080385 CTAAA
129 CTAAA
* *
7080390 ATAGC-GACATTTTCAATTACAAATGCCACCAAAGCAATGGTGTTTTTCTCATAAAAATATCACT
1 ATAGCAG-CATTTTCAATTACAAATACCACCAAAGCAATGGTGTTTTTCTCATAAAAATACCACT
* * * * * *
7080454 AAATTAATGACGTC-CTAAATATACAAATGCCACTAATATAGAGGCATTTTCAAATACAAATACC
65 -AATTAGTGGCGTCTC-AAAGATAGAAATGCCACTAATATGGAGGCATTTTCAAATACAAACACC
7080518 TCTAAA
128 TCTAAA
* * ** * * *
7080524 ATAGCAGCATTTTCAGTTATAAATACCACCAAAGCAACAGTGTTTTTCTTATAAAAATGCAACTA
1 ATAGCAGCATTTTCAATTACAAATACCACCAAAGCAATGGTGTTTTTCTCATAAAAATACCACTA
* * * *
7080589 ATTTAGCGGCGTTTCAAAGATAGAAACGCCACTAAAATGGCA-GCATTTT
66 A-TTAGTGGCGTCTCAAAGATAGAAATGCCACTAATATGG-AGGCATTTT
7080638 TTCTAAAATG
Statistics
Matches: 204, Mismatches: 35, Indels: 17
0.80 0.14 0.07
Matches are distributed among these distances:
132 6 0.03
133 10 0.05
134 184 0.90
135 4 0.02
ACGTcount: A:0.40, C:0.19, G:0.12, T:0.28
Consensus pattern (133 bp):
ATAGCAGCATTTTCAATTACAAATACCACCAAAGCAATGGTGTTTTTCTCATAAAAATACCACTA
ATTAGTGGCGTCTCAAAGATAGAAATGCCACTAATATGGAGGCATTTTCAAATACAAACACCTCT
AAA
Found at i:7080512 original size:33 final size:33
Alignment explanation
Indices: 7080474--7080552 Score: 88
Period size: 33 Copynumber: 2.4 Consensus size: 33
7080464 CGTCCTAAAT
* *
7080474 ATACAAATGCCACTAATATAG-AGGCATTTTCAA
1 ATACAAATACCACTAAAATAGCA-GCATTTTCAA
* *
7080507 ATACAAATACCTCTAAAATAGCAGCATTTTCAG
1 ATACAAATACCACTAAAATAGCAGCATTTTCAA
* *
7080540 TTATAAATACCAC
1 ATACAAATACCAC
7080553 CAAAGCAACA
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
33 37 0.97
34 1 0.03
ACGTcount: A:0.43, C:0.20, G:0.09, T:0.28
Consensus pattern (33 bp):
ATACAAATACCACTAAAATAGCAGCATTTTCAA
Found at i:7083492 original size:20 final size:19
Alignment explanation
Indices: 7083450--7083501 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
7083440 TTAACATGAA
* *
7083450 ATTAATATAATAAAAATAT
1 ATTAAAATAATAAAAATAC
*
7083469 ATTAAAATAAGTAAAAATGC
1 ATTAAAATAA-TAAAAATAC
7083489 ATTAAAAATAATA
1 ATT-AAAATAATA
7083502 TAACTAAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 9 0.32
20 12 0.43
21 7 0.25
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (19 bp):
ATTAAAATAATAAAAATAC
Found at i:7088312 original size:21 final size:21
Alignment explanation
Indices: 7088283--7088324 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
7088273 TTGCCTATTG
*
7088283 TGGTTCAAGGCTGTGTACTTA
1 TGGTACAAGGCTGTGTACTTA
*
7088304 TGGTACAAGGTTGTGTACTTA
1 TGGTACAAGGCTGTGTACTTA
7088325 GCAAGGAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.12, G:0.29, T:0.38
Consensus pattern (21 bp):
TGGTACAAGGCTGTGTACTTA
Found at i:7094811 original size:84 final size:85
Alignment explanation
Indices: 7094628--7094783 Score: 244
Period size: 84 Copynumber: 1.9 Consensus size: 85
7094618 TATGTTACCT
* * *
7094628 TCAATAAAGTATAATTCATGTCCAAGATCGAAGATTCACTAAAGATCTATCACAAAACTCCAAAA
1 TCAATAAAGTATAATTCATGTCCAAGATCGAAGATTCACAAAAAATCCATCACAAAACTCCAAAA
7094693 TCTCTATAAGTAAGATACTC
66 TCTCTATAAGTAAGATACTC
* * *
7094713 TCAATAAAGTATAATTCAT-TTCAAGATTGAAGATTCACAAAAAATCCATCTC-AAACTCCAAAA
1 TCAATAAAGTATAATTCATGTCCAAGATCGAAGATTCACAAAAAATCCATCACAAAACTCCAAAA
7094776 TCTCTATA
66 TCTCTATA
7094784 GGTCAAAATC
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
83 19 0.29
84 27 0.42
85 19 0.29
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (85 bp):
TCAATAAAGTATAATTCATGTCCAAGATCGAAGATTCACAAAAAATCCATCACAAAACTCCAAAA
TCTCTATAAGTAAGATACTC
Found at i:7096853 original size:20 final size:19
Alignment explanation
Indices: 7096818--7096869 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 19
7096808 ATAACATGAA
*
7096818 ATTAATATAATAAAAATAT-
1 ATTAAAATAATAAAAAT-TC
7096837 ATTAAAATAAGTAAAAATTC
1 ATTAAAATAA-TAAAAATTC
7096857 ATTAAAAATAATA
1 ATT-AAAATAATA
7096870 TAACTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 10 0.34
20 12 0.41
21 7 0.24
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (19 bp):
ATTAAAATAATAAAAATTC
Found at i:7100163 original size:14 final size:14
Alignment explanation
Indices: 7100144--7100180 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7100134 ATTTATTAGA
*
7100144 TATTAATAATAATT
1 TATTAAAAATAATT
7100158 TATTAAAAATAATT
1 TATTAAAAATAATT
*
7100172 AATTAAAAA
1 TATTAAAAA
7100181 AATACAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
TATTAAAAATAATT
Found at i:7101778 original size:30 final size:30
Alignment explanation
Indices: 7101721--7101789 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
7101711 TTTCAAAATG
* * *
7101721 AAAATCAAAACCCTAAATCCTCTAAACCTT
1 AAAATCAAAACCCCAAATCCTCCAAACCCT
*
7101751 AAAATCAAAACCCCAAA-CTTTCCAAACCCT
1 AAAATCAAAACCCCAAATC-CTCCAAACCCT
7101781 AAAACTCAA
1 AAAA-TCAA
7101790 GCCTTAAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 1 0.03
30 28 0.85
31 4 0.12
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (30 bp):
AAAATCAAAACCCCAAATCCTCCAAACCCT
Found at i:7101855 original size:15 final size:14
Alignment explanation
Indices: 7101828--7101890 Score: 74
Period size: 14 Copynumber: 4.4 Consensus size: 14
7101818 AACTATAAAC
*
7101828 CCTAAAATCAAAAT
1 CCTAAACTCAAAAT
7101842 CCTAAACCTCAAAA-
1 CCTAAA-CTCAAAAT
*
7101856 CCTAAATTCAAAAT
1 CCTAAACTCAAAAT
*
7101870 CCCAAACTCTAAAAT
1 CCTAAACTC-AAAAT
7101885 CCTAAA
1 CCTAAA
7101891 ACCCCAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 6 0.15
14 19 0.46
15 16 0.39
ACGTcount: A:0.51, C:0.29, G:0.00, T:0.21
Consensus pattern (14 bp):
CCTAAACTCAAAAT
Found at i:7101855 original size:21 final size:20
Alignment explanation
Indices: 7101823--7101900 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 20
7101813 AATTGAACTA
7101823 TAAACCCTAAAATCAAAATCC
1 TAAACCC-AAAATCAAAATCC
* * *
7101844 TAAACCTCAAAACCTAAATTC
1 TAAACC-CAAAATCAAAATCC
* *
7101865 AAAATCCCAAACTCTAAAATCC
1 TAAA-CCCAAAATC-AAAATCC
*
7101887 TAAAACCCCAAATC
1 T-AAACCCAAAATC
7101901 TGGCCTGAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
21 24 0.57
22 15 0.36
23 3 0.07
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (20 bp):
TAAACCCAAAATCAAAATCC
Found at i:7101860 original size:28 final size:29
Alignment explanation
Indices: 7101828--7101891 Score: 87
Period size: 28 Copynumber: 2.2 Consensus size: 29
7101818 AACTATAAAC
*
7101828 CCTAAAATCAAAATCCTAAAC-CTCAAAA-
1 CCTAAAATCAAAATCCCAAACTCT-AAAAT
*
7101856 CCTAAATTCAAAATCCCAAACTCTAAAAT
1 CCTAAAATCAAAATCCCAAACTCTAAAAT
7101885 CCTAAAA
1 CCTAAAA
7101892 CCCCAAATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 23 0.74
29 8 0.26
ACGTcount: A:0.52, C:0.28, G:0.00, T:0.20
Consensus pattern (29 bp):
CCTAAAATCAAAATCCCAAACTCTAAAAT
Found at i:7105853 original size:19 final size:19
Alignment explanation
Indices: 7105829--7105865 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7105819 ATTTAAATGA
*
7105829 TTTTTTTATTATTAGACTC
1 TTTTTTTATAATTAGACTC
7105848 TTTTTTTATAATTAGACT
1 TTTTTTTATAATTAGACT
7105866 AAAAAAGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.08, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTTTTTATAATTAGACTC
Found at i:7111780 original size:2 final size:2
Alignment explanation
Indices: 7111773--7111811 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
7111763 AAATTCGTAT
* * *
7111773 TA TA TA TA TA TA TA TC TA TA TA TA TA TT TT TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7111812 CTAGTAAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:7111794 original size:12 final size:12
Alignment explanation
Indices: 7111777--7111814 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
7111767 TCGTATTATA
7111777 TATATATATATC
1 TATATATATATC
*
7111789 TATATATATATT
1 TATATATATATC
*
7111801 TTTATATATATC
1 TATATATATATC
7111813 TA
1 TA
7111815 GTAAATAAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (12 bp):
TATATATATATC
Found at i:7111811 original size:24 final size:25
Alignment explanation
Indices: 7111779--7111828 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
7111769 GTATTATATA
* *
7111779 TATATATATCTA-TATATATATTTT
1 TATATATATCTAGTAAATAAATTTT
7111803 TATATATATCTAGTAAATAAATTTT
1 TATATATATCTAGTAAATAAATTTT
7111828 T
1 T
7111829 GATTAAATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (25 bp):
TATATATATCTAGTAAATAAATTTT
Found at i:7112171 original size:16 final size:16
Alignment explanation
Indices: 7112147--7112180 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
7112137 ATCTTTAAAT
7112147 AAAACTAATAATTTTA
1 AAAACTAATAATTTTA
*
7112163 AAAATTAATAATTTTA
1 AAAACTAATAATTTTA
7112179 AA
1 AA
7112181 TACAACATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
AAAACTAATAATTTTA
Found at i:7117751 original size:18 final size:17
Alignment explanation
Indices: 7117713--7117887 Score: 82
Period size: 18 Copynumber: 10.2 Consensus size: 17
7117703 ATTTTAATAA
7117713 TATTTATT-A-ATATAT
1 TATTTATTAATATATAT
7117728 TA--TATTAATAGTATAT
1 TATTTATTAATA-TATAT
7117744 TATTTATTAATAATATAT
1 TATTTATTAAT-ATATAT
*
7117762 TATTTATTCATATATTAT
1 TATTTATTAATATA-TAT
* *
7117780 TATAATATTTAT-TA-AT
1 TAT-TTATTAATATATAT
* * * *
7117796 TAAATTAATAATATTTGT
1 T-ATTTATTAATATATAT
*
7117814 TATATTATTTATTAGTATAT
1 TAT-TTA-TTAATA-TATAT
*
7117834 TA-TAATATAATAT-TATT
1 TATTTAT-TAATATATA-T
7117851 TATTTATTAATATAATAT
1 TATTTATTAATAT-ATAT
*
7117869 T-TTT-TTAAGTATAAAT
1 TATTTATTAA-TATATAT
7117885 TAT
1 TAT
7117888 GCTTAAAATT
Statistics
Matches: 121, Mismatches: 18, Indels: 40
0.68 0.10 0.22
Matches are distributed among these distances:
13 4 0.03
14 1 0.01
15 3 0.02
16 25 0.21
17 24 0.20
18 46 0.38
19 13 0.11
20 5 0.04
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTTATTAATATATAT
Found at i:7117875 original size:19 final size:22
Alignment explanation
Indices: 7117713--7117869 Score: 83
Period size: 22 Copynumber: 6.9 Consensus size: 22
7117703 ATTTTAATAA
*
7117713 TATTTATTAATATATTATATTAATAG
1 TATTTATTAATATA--ATATT-AT-T
* *
7117739 TATATTATTTAT-TAATAATATAT
1 TAT-TTATTAATATAATATTAT-T
* * *
7117762 TATTTATTCATATATTATTATAA
1 TATTTATTAATATAATATTAT-T
*
7117785 TATTTATTAAT-TAA-ATTAATAA
1 TATTTATTAATATAATATT-AT-T
* *
7117807 TATTTGTT-ATATTAT-TTATT
1 TATTTATTAATATAATATTATT
7117827 AGTATATTA-TAATATAATATTATT
1 --TAT-TTATTAATATAATATTATT
7117851 TATTTATTAATATAATATT
1 TATTTATTAATATAATATT
7117870 TTTTTAAGTA
Statistics
Matches: 106, Mismatches: 14, Indels: 26
0.73 0.10 0.18
Matches are distributed among these distances:
21 10 0.09
22 43 0.41
23 32 0.30
24 9 0.08
26 5 0.05
27 7 0.07
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (22 bp):
TATTTATTAATATAATATTATT
Found at i:7118430 original size:35 final size:35
Alignment explanation
Indices: 7118391--7118457 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
7118381 AAATCAAATC
*
7118391 TAATTATATTTTA-TTAAATTT-TTATAAGATAAAAA
1 TAATTAT-TTATATTTAAATTTATTATAA-ATAAAAA
7118426 TAATTATTTATATTTAAATTTATTATAAATAA
1 TAATTATTTATATTTAAATTTATTATAAATAA
7118458 TATGAAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 4 0.14
35 19 0.66
36 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (35 bp):
TAATTATTTATATTTAAATTTATTATAAATAAAAA
Found at i:7120834 original size:21 final size:20
Alignment explanation
Indices: 7120795--7120834 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
7120785 CAATTTGAAC
**
7120795 AAATATGATTAGTGTTTTTT
1 AAATATGATTAGTACTTTTT
7120815 AAATATAGATTAGTACTTTT
1 AAATAT-GATTAGTACTTTT
7120835 ATTTTATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (20 bp):
AAATATGATTAGTACTTTTT
Found at i:7121244 original size:33 final size:33
Alignment explanation
Indices: 7121197--7121260 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
7121187 TATTCATATA
7121197 AATTAATTTGTATGTTACTTAAAAAGTAGAATT
1 AATTAATTTGTATGTTACTTAAAAAGTAGAATT
* * *
7121230 AATTAATTTTTATGTTACTTGAGAAGTAGAA
1 AATTAATTTGTATGTTACTTAAAAAGTAGAA
7121261 CTCTATTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.41, C:0.03, G:0.14, T:0.42
Consensus pattern (33 bp):
AATTAATTTGTATGTTACTTAAAAAGTAGAATT
Found at i:7130718 original size:23 final size:23
Alignment explanation
Indices: 7130668--7130735 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
7130658 TAGAATTATT
* *
7130668 ATAAAATTTTATTAATCAATATA
1 ATAAAATTTTATTAATAAAAATA
7130691 A-AAAATATTTATTAA-AAAAATA
1 ATAAAAT-TTTATTAATAAAAATA
* *
7130713 ATAAAATTTAAATTTATAAAAAT
1 ATAAAATTT-TATTAATAAAAAT
7130736 TATATTTACT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
22 13 0.35
23 18 0.49
24 6 0.16
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAAAATTTTATTAATAAAAATA
Found at i:7132789 original size:20 final size:19
Alignment explanation
Indices: 7132755--7132795 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
7132745 TCCTAATTTC
*
7132755 TTATTTTTTTATTTTTTAT
1 TTATTTTTTTATTTTCTAT
*
7132774 TTATTTCTTTTCTTTTCTAT
1 TTATTT-TTTTATTTTCTAT
7132794 TT
1 TT
7132796 TTAAATGTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.80
Consensus pattern (19 bp):
TTATTTTTTTATTTTCTAT
Done.