Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 36 of 133
Found at i:8082054 original size:118 final size:115
Alignment explanation
Indices: 8081851--8082365 Score: 476
Period size: 118 Copynumber: 4.3 Consensus size: 115
8081841 TTGTACAACA
* * * *** * * *
8081851 AAAATTGATACTTTTAACTTTTCCT-TAAAGTA-TTTGAGAGTTTTTATTTTAAGAAAAATTGAT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAATTTTAATTTCAAGAAAAATTGAT
8081914 ACTTTCAACTTTTTCTT-AAAATATTTTTCTTGATAATTTTTATTTTT-AAG
66 ACTTTCAACTTTTTCTTCAAAATATTTTT-TT-ATAATTTTTATTTTTAAAG
* *
8081964 AAAAATT-AGTACTTCCAACTTTTCCTTAAAATATATATTTTTTAATTTTAATTTCAAGAAAAAT
1 -AAAATTGA-TACTTTCAACTTTTCCTCAAAA-ATAT-TTTTTTAATTTTAATTTCAAGAAAAAT
*
8082028 TGATACTTTCAACTTTTT-TTCAAAATACTTTTCTTCATAATTTTTATTTTTTAAA-
62 TGATACTTTCAACTTTTTCTTCAAAATA-TTTT-TTTATAATTTTTA-TTTTTAAAG
* * * *
8082083 AAAATTAATACTTTCAACACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAATTTTATTTTCAA
1 AAAATTGATACTTTCAAC-TTTTC--C------TCAAAAATATTTTTT--TAATTTTAATTTCAA
* * *
8082148 -AGAAAATTGATACTTTCAACTTTTTCGTAAAAATA-TTTTTTA-AACCTTTTTATTTTCAAAG
55 GA-AAAATTGATACTTTCAACTTTTTCTTCAAAATATTTTTTTATAA--TTTTTATTTTTAAAG
* * *
8082209 GAAATTGATACTTTCAACTTTTTCTCAAAAATATGTTATTTTAAATTTTATTTTCAAGAAAAATT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATAT-TT-TTTT-AATTTTAATTTCAAGAAAAATT
* * * *
8082274 GATACTTTTAACTTTTTC-CCAGAAATATTTTTTTAAAAATTTTATTTTTAAAG
63 GATACTTTCAACTTTTTCTTCA-AAATATTTTTTTATAATTTTTATTTTTAAAG
8082327 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
8082366 AAAAATTTTA
Statistics
Matches: 335, Mismatches: 32, Indels: 66
0.77 0.07 0.15
Matches are distributed among these distances:
113 1 0.00
114 21 0.06
115 3 0.01
116 5 0.01
117 15 0.04
118 159 0.47
119 26 0.08
120 5 0.01
121 1 0.00
123 1 0.00
124 2 0.01
125 18 0.05
126 30 0.09
127 41 0.12
128 7 0.02
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.49
Consensus pattern (115 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAATTTTAATTTCAAGAAAAATTGAT
ACTTTCAACTTTTTCTTCAAAATATTTTTTTATAATTTTTATTTTTAAAG
Found at i:8082117 original size:69 final size:67
Alignment explanation
Indices: 8082032--8082167 Score: 186
Period size: 67 Copynumber: 2.0 Consensus size: 67
8082022 AAAAATTGAT
* * *
8082032 ACTTTCAACTTTTTTTC-AAAATACTTTTCTTCATAATTTTTATTTTTTAAA-AAAATTAATACT
1 ACTTTCAACTTTTTTTCAAAAATA-TTTT-TT-AGAAATTTTA-TTTTCAAAGAAAATTAATACT
8082095 TTCAAC
62 TTCAAC
*
8082101 ACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAATTTTATTTTCAAAGAAAATTGATACTTTCA
1 ACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAATTTTATTTTCAAAGAAAATTAATACTTTCA
8082166 AC
66 AC
8082168 TTTTTCGTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
66 7 0.11
67 25 0.41
68 2 0.03
69 21 0.34
70 6 0.10
ACGTcount: A:0.36, C:0.13, G:0.02, T:0.49
Consensus pattern (67 bp):
ACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAATTTTATTTTCAAAGAAAATTAATACTTTCA
AC
Found at i:8082242 original size:245 final size:243
Alignment explanation
Indices: 8081892--8082344 Score: 586
Period size: 244 Copynumber: 1.9 Consensus size: 243
8081882 ATTTGAGAGT
*
8081892 TTTTATTTTAAGAAAAATTGATACTTTCAACTTTTTCTTAAAATATTTTTCTTGATAATTTTTAT
1 TTTTATTTTAAGAAAAATTGATACTTTCAACTTTTTCTAAAAATATTTTTCTTGATAATTTTTAT
*
8081957 TTTTAAGAAAAATTAGTACTTCCAACTTTTCCTTAAAATATATATT-TTTT-AATTTTAATTTCA
66 TTTAAAGAAAAATTAGTACTTCCAACTTTTCC-TAAAA-ATATATTATTTTAAATTTTAATTTCA
** * *
8082020 AGAAAAATTGATACTTTCAACTTTTTTTCA-AAATACTTTTCTTCATAATTTTTATTTTTTAAA-
129 AGAAAAATTGATACTTTCAACTTTTTCCCAGAAATA-TTTT-TTCAAAAATTTTA-TTTTTAAAG
8082083 AAAATTAATACTTTCAACACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAA
191 AAAATTAATACTTTCAACACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAA
8082136 TTTTATTTTCAA-AGAAAATTGATACTTTCAACTTTTTCGTAAAAATA-TTTT-TT-A-AACCTT
1 TTTTATTTT-AAGA-AAAATTGATACTTTCAACTTTTTC-TAAAAATATTTTTCTTGATAA--TT
* * * *
8082196 TTTATTTTCAAAG-GAAATT-GATACTTTCAACTTTTTCTCAAAAATATGTTATTTTAAATTTTA
61 TTTATTTT-AAAGAAAAATTAG-TACTTCCAACTTTTCCT-AAAAATATATTATTTTAAATTTTA
* * *
8082259 TTTTCAAGAAAAATTGATACTTTTAACTTTTTCCCAGAAATATTTTTTTAAAAATTTTATTTTTA
123 ATTTCAAGAAAAATTGATACTTTCAACTTTTTCCCAGAAATATTTTTTCAAAAATTTTATTTTTA
*
8082324 AAGAAAATTGATACTTTCAAC
188 AAGAAAATTAATACTTTCAAC
8082345 TTTTCCTCAA
Statistics
Matches: 183, Mismatches: 14, Indels: 24
0.83 0.06 0.11
Matches are distributed among these distances:
242 2 0.01
243 17 0.09
244 76 0.42
245 76 0.42
246 12 0.07
ACGTcount: A:0.36, C:0.11, G:0.04, T:0.49
Consensus pattern (243 bp):
TTTTATTTTAAGAAAAATTGATACTTTCAACTTTTTCTAAAAATATTTTTCTTGATAATTTTTAT
TTTAAAGAAAAATTAGTACTTCCAACTTTTCCTAAAAATATATTATTTTAAATTTTAATTTCAAG
AAAAATTGATACTTTCAACTTTTTCCCAGAAATATTTTTTCAAAAATTTTATTTTTAAAGAAAAT
TAATACTTTCAACACTTTCAACTTTTTTTCAAAAATATTTTTTAGAAA
Found at i:8082419 original size:10 final size:9
Alignment explanation
Indices: 8082393--8082418 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8082383 AAAATCATTG
8082393 AAAAAAAAT
1 AAAAAAAAT
8082402 AAAAAAAAT
1 AAAAAAAAT
8082411 AAAAAAAA
1 AAAAAAAA
8082419 AATAAGGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8083565 original size:44 final size:44
Alignment explanation
Indices: 8083467--8083828 Score: 394
Period size: 44 Copynumber: 8.2 Consensus size: 44
8083457 AAATTTTGAT
* * * *
8083467 TAAAGCTCCTCTAAGTAGAGACTTAATAACTTTGAAAAAAATAAA
1 TAAAGCTCCTCTAAATAGAGGCTCAACAACTTTG-AAAAAATAAA
* * * * * *
8083512 CAAAGCTCCTCTAAGTAAAAGCTCAACAATTTTTAAAAAATAAA
1 TAAAGCTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAA
* *
8083556 TAAAGCTCCTCAAAATGGAGGCTCAACAACTTTGAAAAAATAAA
1 TAAAGCTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAA
* * * * *
8083600 TAATGTTCCTCT-AATAAGAGGCTTAACTACTTTGAGAAAAT-AA
1 TAAAGCTCCTCTAAAT-AGAGGCTCAACAACTTTGAAAAAATAAA
8083643 -AAAGCTCCTCTAAATAGAGGCTCAACAACTTTTG-AAAAATAAA
1 TAAAGCTCCTCTAAATAGAGGCTCAACAAC-TTTGAAAAAATAAA
*
8083686 TAAGGCTCCTCTAAATAGAGGCTCAACAACTTTTGAAAAAATAAA
1 TAAAGCTCCTCTAAATAGAGGCTCAACAAC-TTTGAAAAAATAAA
* *
8083731 -CAAGACTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAA
1 TAAAG-CTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAA
* * * *
8083775 CAAAGCTCCGCTAATTAGAGGCTCAATAACTTTTG-AAAAATAAA
1 TAAAGCTCCTCTAAATAGAGGCTCAACAAC-TTTGAAAAAATAAA
* *
8083819 CAAGGCTCCT
1 TAAAGCTCCT
8083829 TGACAATCAT
Statistics
Matches: 269, Mismatches: 39, Indels: 19
0.82 0.12 0.06
Matches are distributed among these distances:
42 26 0.10
43 14 0.05
44 163 0.61
45 66 0.25
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (44 bp):
TAAAGCTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAA
Found at i:8083565 original size:89 final size:86
Alignment explanation
Indices: 8083468--8083828 Score: 386
Period size: 89 Copynumber: 4.1 Consensus size: 86
8083458 AATTTTGATT
* * * * *
8083468 AAAGCTCCTCTAAGTAGAGACTTAATAACTTTGAAAAAAATAAACAAAGCTCCTCTAAGTAAAAG
1 AAAGCTCCTCTAAATAGAGGCTCAACAACTTTG-AAAAAATAAACAAAGCTCCTCTAA-TAAAGG
* *
8083533 CTCAACAATTTTTAAAAAATAAA
64 CTCAACAACTTTGAAAAAATAAA
* * * * *
8083556 TAAAGCTCCTCAAAATGGAGGCTCAACAACTTTGAAAAAATAAATAATGTTCCTCTAATAAGAGG
1 -AAAGCTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAATAA-AGG
* * *
8083621 CTTAACTACTTTGAGAAAAT-AA
64 CTCAACAACTTTGAAAAAATAAA
* * *
8083643 AAAGCTCCTCTAAATAGAGGCTCAACAACTTTTG-AAAAATAAATAAGGCTCCTCTAAATAGAGG
1 AAAGCTCCTCTAAATAGAGGCTCAACAAC-TTTGAAAAAATAAACAAAGCTCCTCT-AATAAAGG
8083707 CTCAACAACTTTTGAAAAAATAAA
64 CTCAACAAC-TTTGAAAAAATAAA
* * * *
8083731 CAAGACTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAATAAACAAAGCTCCGCTAATTAGAGG
1 AAAG-CTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAA-TAAAGG
*
8083796 CTCAATAACTTTTG-AAAAATAAA
64 CTCAACAAC-TTTGAAAAAATAAA
*
8083819 CAAGGCTCCT
1 -AAAGCTCCT
8083829 TGACAATCAT
Statistics
Matches: 232, Mismatches: 31, Indels: 19
0.82 0.11 0.07
Matches are distributed among these distances:
86 56 0.24
87 23 0.10
88 63 0.27
89 90 0.39
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (86 bp):
AAAGCTCCTCTAAATAGAGGCTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAATAAAGGCT
CAACAACTTTGAAAAAATAAA
Found at i:8083759 original size:175 final size:174
Alignment explanation
Indices: 8083468--8083828 Score: 442
Period size: 175 Copynumber: 2.1 Consensus size: 174
8083458 AATTTTGATT
* * * *
8083468 AAAGCTCCTCTAAGTAGAGACTTAATAACTTTGAAAAAAATAAACAAAGCTCCTCTAAGTAAAAG
1 AAAGCTCCTCTAAATAGAGACTCAACAACTTTG-AAAAAATAAACAAAGCTCCTCTAAATAAAAG
* * **
8083533 CTCAACAATTTTTAAAAAATAAATAAAGCTCCTCAAAATGGAGGCTCAACAACTTTGAAAAAATA
65 CTCAACAATTTTGAAAAAATAAACAAAGCTCCTCAAAACAGAGGCTCAACAACTTTGAAAAAATA
* * * * *
8083598 AATAATGTTCCTCTAATAAGAGGCTTAACT-AC-TTTGAGAAAATAA
130 AACAAAGCTCCGCTAATAAGAGGCTCAA-TAACTTTTGA-AAAATAA
* * * * *
8083643 AAAGCTCCTCTAAATAGAGGCTCAACAACTTTTG-AAAAATAAATAAGGCTCCTCTAAATAGAGG
1 AAAGCTCCTCTAAATAGAGACTCAACAAC-TTTGAAAAAATAAACAAAGCTCCTCTAAATAAAAG
*
8083707 CTCAACAACTTTTGAAAAAATAAAC-AAGACTCCTCTAAACAGAGGCTCAACAACTTTGAAAAAA
65 CTCAACAA-TTTTGAAAAAATAAACAAAG-CTCCTCAAAACAGAGGCTCAACAACTTTGAAAAAA
*
8083771 TAAACAAAGCTCCGCTAATTAGAGGCTCAATAACTTTTGAAAAATAA
128 TAAACAAAGCTCCGCTAATAAGAGGCTCAATAACTTTTGAAAAATAA
8083818 ACAAGGCTCCT
1 A-AA-GCTCCT
8083829 TGACAATCAT
Statistics
Matches: 159, Mismatches: 20, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
174 37 0.23
175 105 0.66
176 11 0.07
177 6 0.04
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (174 bp):
AAAGCTCCTCTAAATAGAGACTCAACAACTTTGAAAAAATAAACAAAGCTCCTCTAAATAAAAGC
TCAACAATTTTGAAAAAATAAACAAAGCTCCTCAAAACAGAGGCTCAACAACTTTGAAAAAATAA
ACAAAGCTCCGCTAATAAGAGGCTCAATAACTTTTGAAAAATAA
Found at i:8095455 original size:59 final size:58
Alignment explanation
Indices: 8095319--8095981 Score: 667
Period size: 59 Copynumber: 11.2 Consensus size: 58
8095309 TGCTTTTGTA
* * * * *
8095319 CAAGAAAATTTGATACTTTCAACTTTTTCTTAAAATATTTTTCTTGATAATTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTT-TT-AAAAATTTTATTTT
* * ** *
8095379 TAA-AGAAAATT-AGTACTTCCAACTTTTCCTCAAAATATTTGTTTTTGAAATTTTAATTT
1 CAAGA-AAAATTGA-TACTTTCAACTTTTCCTCAAAATATTT-TTTTAAAAATTTTATTTT
* * * *
8095438 CAAGAAAAATTGATACTTTTC-ACTTTTCCTTAAAATACTTTTCTTGATAATTTTTATTTT
1 CAAGAAAAATTGATAC-TTTCAACTTTTCCTCAAAATA-TTTT-TTTAAAAATTTTATTTT
* * *
8095498 TAAGGAAAATTGATACTTTCAACTTTTTCTCAAAA-ATATTTTTTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATAT-TTTTTTAAAAATTTTATTTT
* *
8095556 TAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAACAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAAC-TTTTCCTCAAAATATTTTTTT-AAA-AATTTTATTTT
** * * *
8095617 CAAGGGAAATTGATATTTTCAACTTTGCCCCAAAAATATTTTTTTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTTAAAAATTTTATTTT
* * * *
8095676 CAAGGAAAATTGATACTTTTAACTTTTCCCTTAAAATATTTTTTTAAAACCTTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTT-CCTCAAAATATTTTTTTAAAA--ATTTTATTTT
* * * *
8095737 CAAGAAAAATTGATATTTTCAACTTTGCCCCAAAAATATATTTTTAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTTAAAAATTTTATTTT
* * * *
8095796 TAAGAAAAATTGATACTTTTAACTTCTCTCC-AAAAATATTTTTTTAAAACCTTTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTT-T-TCCTCAAAATATTTTTTTAAAA--ATTTTATTTT
* * * *
8095857 CAAGGAAAATTAATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAATTTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTTAAAAATTTTATTTT
* * * *
8095916 CAAGAAAAATTAATACTTTCAACTTTTTCTTAAAA-ATATTTTTTAAAAAATTTATTTT
1 CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATAT-TTTTTTAAAAATTTTATTTT
8095974 --AGAAAAAT
1 CAAGAAAAAT
8095982 CATTGAAAAA
Statistics
Matches: 509, Mismatches: 68, Indels: 56
0.80 0.11 0.09
Matches are distributed among these distances:
56 8 0.02
57 2 0.00
58 59 0.12
59 201 0.39
60 98 0.19
61 141 0.28
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (58 bp):
CAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTTAAAAATTTTATTTT
Found at i:8095700 original size:120 final size:119
Alignment explanation
Indices: 8095319--8095968 Score: 792
Period size: 120 Copynumber: 5.4 Consensus size: 119
8095309 TGCTTTTGTA
* * * * * *
8095319 CAAGAAAATTTGATACTTTCAACTTTTT-CTTAAAATATTTTTCTTGATAATTTTTATTTTTAAA
1 CAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTT-TTAAAAATTTTTATTTTCAAG
* ** *
8095383 GAAAATT-AGTACTTCCAACTTTTCCTC-AAAATATTTGTTTTTGAAATTTTAATTT
65 GAAAATTGA-TACTTTCAACTTTTCCTCAAAAATATTT-TTTTAAAAATTTTATTTT
* * * * *
8095438 CAAGAAAAATTGATACTTTTC-AC-TTTTCCTTAAAATACTTTTCTTGATAATTTTTATTTTTAA
1 CAAGAAAAATTGATAC-TTTCAACTTTTTCCTAAAAATA-TTTTTTTAAAAATTTTTATTTTCAA
*
8095501 GGAAAATTGATACTTTCAACTTTTTCTCAAAAATA-TTTTTTAAAAATTTTATTTT
64 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTATTTT
* *
8095556 TAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAACAATTTTATTTTCAAG
1 CAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAA-ATTTTTATTTTCAAG
* * * *
8095621 GGAAATTGATATTTTCAACTTTGCCCCAAAAATATTTTTTTAAAAATTTTATTTT
65 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTATTTT
* * * * *
8095676 CAAGGAAAATTGATACTTTTAACTTTTCCCTTAAAATATTTTTTTAAAACCTTTTTATTTTCAAG
1 CAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAA-ATTTTTATTTTCAAG
* * * * *
8095741 AAAAATTGATATTTTCAACTTTGCCCCAAAAATATATTTTTAAAAATTTTATTTT
65 GAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTATTTT
* * * *
8095796 TAAGAAAAATTGATACTTTTAACTTCTCTCC-AAAAATATTTTTTTAAAACCTTTTTATTTTCAA
1 CAAGAAAAATTGATACTTTCAACTT-TTTCCTAAAAATATTTTTTTAAAA-ATTTTTATTTTCAA
* * *
8095860 GGAAAATTAATACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAATTTTATTTT
64 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTATTTT
* * *
8095916 CAAGAAAAATTAATACTTTCAACTTTTTCTTAAAAATATTTTTTAAAAAATTT
1 CAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAAATTT
8095969 ATTTTAGAAA
Statistics
Matches: 470, Mismatches: 50, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
117 4 0.01
118 44 0.09
119 132 0.28
120 287 0.61
121 3 0.01
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (119 bp):
CAAGAAAAATTGATACTTTCAACTTTTTCCTAAAAATATTTTTTTAAAAATTTTTATTTTCAAGG
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTAAAAATTTTATTTT
Found at i:8096476 original size:20 final size:20
Alignment explanation
Indices: 8096437--8096475 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
8096427 TCATCGATTT
8096437 CTGGGTTTCTTCGTCGAAAA
1 CTGGGTTTCTTCGTCGAAAA
*
8096457 CTGGGTTT-TTTGTCGAAAA
1 CTGGGTTTCTTCGTCGAAAA
8096476 AGTAACCGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.15, G:0.26, T:0.38
Consensus pattern (20 bp):
CTGGGTTTCTTCGTCGAAAA
Found at i:8100305 original size:41 final size:41
Alignment explanation
Indices: 8100251--8100335 Score: 125
Period size: 41 Copynumber: 2.1 Consensus size: 41
8100241 AACTTGAAAA
* *
8100251 AAATATTGTTTGAAAATGGCTCCTTCTAAATAGAGGTTTTG
1 AAATATTGTTTGAAAATGGCTCATTCTAAATAGAGGCTTTG
* * *
8100292 AAATTTTGTTTGAAAATGGCTTATTTTAAATAGAGGCTTTG
1 AAATATTGTTTGAAAATGGCTCATTCTAAATAGAGGCTTTG
8100333 AAA
1 AAA
8100336 CTTCAAAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.34, C:0.07, G:0.19, T:0.40
Consensus pattern (41 bp):
AAATATTGTTTGAAAATGGCTCATTCTAAATAGAGGCTTTG
Found at i:8100560 original size:105 final size:105
Alignment explanation
Indices: 8100416--8100662 Score: 293
Period size: 105 Copynumber: 2.4 Consensus size: 105
8100406 AATAGAGATT
* * * *
8100416 TTGAAACTTT-AAAATCTAAAATGTTTTACCCAAAGGTCTTGAAAATTATGCTCAG-AGGTCTTA
1 TTGAAACTTTAAAAATTTAAAATGATTTACCCAAAGGTCTTGAAAATTATAC-CAGAAAGTCTTA
* * * **
8100479 CAAATTTCAACATCTTTGAATGTTCCTCATAATCAGAGGCA
65 CAAATCTCAACATCTTTGAATGCTCCTCACAATCAGAAACA
* * *
8100520 TTGAAACTTTAAAAATTTAAAATAATTTACCCGAAA-GTCTTGGAAATTATACCCGAAAGTCTTA
1 TTGAAACTTTAAAAATTTAAAATGATTTACCC-AAAGGTCTTGAAAATTATACCAGAAAGTCTTA
* *
8100584 CAAATCTCAACATCTTTGAATGCTCTTCCCAATCAGAAACA
65 CAAATCTCAACATCTTTGAATGCTCCTCACAATCAGAAACA
** * *
8100625 TTGGGACTTTAAAAATTTAAAATGGTTTACCCAGAGGT
1 TTGAAACTTTAAAAATTTAAAATGATTTACCCAAAGGT
8100663 TTTAGAGATT
Statistics
Matches: 120, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
104 14 0.12
105 103 0.86
106 3 0.03
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.32
Consensus pattern (105 bp):
TTGAAACTTTAAAAATTTAAAATGATTTACCCAAAGGTCTTGAAAATTATACCAGAAAGTCTTAC
AAATCTCAACATCTTTGAATGCTCCTCACAATCAGAAACA
Found at i:8100588 original size:22 final size:21
Alignment explanation
Indices: 8100543--8100588 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
8100533 AATTTAAAAT
**
8100543 AATTTACCCGAAAGTCTTGGA
1 AATTTACCCGAAAGTCTTACA
8100564 AATTATACCCGAAAGTCTTACA
1 AATT-TACCCGAAAGTCTTACA
8100586 AAT
1 AAT
8100589 CTCAACATCT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (21 bp):
AATTTACCCGAAAGTCTTACA
Found at i:8100692 original size:22 final size:22
Alignment explanation
Indices: 8100664--8100710 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
8100654 CCCAGAGGTT
* *
8100664 TTAGAGATTATGCTCGAAAGTC
1 TTAGAGATTATGCCCGAAAGCC
8100686 TTAGAGATTATGCCCGAAAGCC
1 TTAGAGATTATGCCCGAAAGCC
8100708 TTA
1 TTA
8100711 CAAATCTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (22 bp):
TTAGAGATTATGCCCGAAAGCC
Found at i:8100777 original size:127 final size:127
Alignment explanation
Indices: 8100551--8100789 Score: 363
Period size: 127 Copynumber: 1.9 Consensus size: 127
8100541 ATAATTTACC
* * *
8100551 CGAAAGTCTTGGAAATTATACCCGAAAGTCTTACAAATCTCAACATCTTTGAATGCTCTTCCCAA
1 CGAAAGTCTTAGAAATTATACCCGAAAGCCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAA
** *
8100616 TCAGAAACATTGGGACTTTAAAAATTTAAAATGGTTTACCCAGAGGTTTTAGAGATTATGCT
66 TCAGAAACATTAAGACTTTAAAAATTTAAAATGGTTTACCCAAAGGTTTTAGAGATTATGCT
* * *
8100678 CGAAAGTCTTAGAGATTATGCCCGAAAGCCTTACAAATCTCGACATCTTTGAATGCTCCTCCCAA
1 CGAAAGTCTTAGAAATTATACCCGAAAGCCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAA
* *
8100743 TCA-AAGGCATTAAGACTTTAAAAATTTAAAATGGTTTGCCCAAAGGT
66 TCAGAA-ACATTAAGACTTTAAAAATTTAAAATGGTTTACCCAAAGGT
8100790 CTTACAAATC
Statistics
Matches: 100, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
126 2 0.02
127 98 0.98
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (127 bp):
CGAAAGTCTTAGAAATTATACCCGAAAGCCTTACAAATCTCAACATCTTTGAATGCTCCTCCCAA
TCAGAAACATTAAGACTTTAAAAATTTAAAATGGTTTACCCAAAGGTTTTAGAGATTATGCT
Found at i:8100835 original size:83 final size:83
Alignment explanation
Indices: 8100707--8100864 Score: 230
Period size: 83 Copynumber: 1.9 Consensus size: 83
8100697 GCCCGAAAGC
* * *
8100707 CTTACAAATCTCGACATCTTTGAATGCTCCTCCCAATCAAAGGCATT-AAGACTT-TAAAAATTT
1 CTTACAAATCTCAACATCTTTAAATGCTCATCCCAATCAAAGGCATTGAA-ACTTAT-AAAATTT
8100770 AAAATGGTTTGCCCAAAGGT
64 AAAATGGTTTGCCCAAAGGT
* *
8100790 CTTACAAATCTCAACATCTTTAAATGCTCATCCCAATTAGAGGCATTGAAACTTATAAAATTTAA
1 CTTACAAATCTCAACATCTTTAAATGCTCATCCCAATCAAAGGCATTGAAACTTATAAAATTTAA
*
8100855 AATTGTTTGC
66 AATGGTTTGC
8100865 TTGGAGATCT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
83 64 0.96
84 3 0.04
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.32
Consensus pattern (83 bp):
CTTACAAATCTCAACATCTTTAAATGCTCATCCCAATCAAAGGCATTGAAACTTATAAAATTTAA
AATGGTTTGCCCAAAGGT
Found at i:8101065 original size:209 final size:210
Alignment explanation
Indices: 8100781--8101275 Score: 570
Period size: 209 Copynumber: 2.4 Consensus size: 210
8100771 AAATGGTTTG
* * *
8100781 CCCAAAGGTCTTACAAATCTCAACATCTTTAAATGCTCATCCCAATTAGAGGCATTGAAACTTAT
1 CCCAAAGGTTTTACAAATCTCAATATCTTTAAATGCTCATCCCAATAAGAGGCATTGAAACTT-T
* * *** * *
8100846 -AAAATTTAAAATTGTTTGCTTGGAGATCTTGAAGATTTTGTCC-ATAA-GTCTTACAAATCTCG
65 GAAATTTTAAAATGGTTTGCCCAGAGATCTTGAAGATTAT-ACCTA-AAGGTCTTACAAATCTCG
* * *
8100908 ACATCTTTAAATGCTCTTCCCAATCAGAA-GCATTGAGACTTTAAAAATTTAAAATGCTTTGCTC
128 ACATCTTTAAATGCTCTTCCCAATCA-AAGGCATTAAAACTTTAAAAATTTAAAATGCGTTGCTC
8100972 -AGAGATTTTGAA-ATTATA
192 GA-AGATTTTGAAGATTATA
* * * * * *
8100990 CCTAAAGGTTTTACAAATCACAATATATTTGAATGCCCCTCCCAATAAGAGGCATTGAAACTTTG
1 CCCAAAGGTTTTACAAATCTCAATATCTTTAAATGCTCATCCCAATAAGAGGCATTGAAACTTTG
* * * *
8101055 AAATTTTAAAATGGTTTGCCCAGAGGTCTTGGAGATTATACCTAAAGGTTTTACAAATCTCGATA
66 AAATTTTAAAATGGTTTGCCCAGAGATCTTGAAGATTATACCTAAAGGTCTTACAAATCTCGACA
* * * * *
8101120 TCTTTAAATGTTTTTCCCAATTAAAGGCATTAAAACTTTGAAAATTTAAAATGGGTTGCTCGAAG
131 TCTTTAAATGCTCTTCCCAATCAAAGGCATTAAAACTTTAAAAATTTAAAATGCGTTGCTCGAAG
* *
8101185 GTTTTGAAGATTATG
196 ATTTTGAAGATTATA
* * * * * *
8101200 CCCAAAGGTTTTTCAAATCTCGATATCTTTAAATGCTCTTTCTAATCAGAGGCATTGAAACTTTG
1 CCCAAAGGTTTTACAAATCTCAATATCTTTAAATGCTCATCCCAATAAGAGGCATTGAAACTTTG
8101265 TAAATTTTAAA
66 -AAATTTTAAA
8101276 TGTTTTTCTT
Statistics
Matches: 238, Mismatches: 41, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
208 7 0.03
209 161 0.68
210 60 0.25
211 10 0.04
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.35
Consensus pattern (210 bp):
CCCAAAGGTTTTACAAATCTCAATATCTTTAAATGCTCATCCCAATAAGAGGCATTGAAACTTTG
AAATTTTAAAATGGTTTGCCCAGAGATCTTGAAGATTATACCTAAAGGTCTTACAAATCTCGACA
TCTTTAAATGCTCTTCCCAATCAAAGGCATTAAAACTTTAAAAATTTAAAATGCGTTGCTCGAAG
ATTTTGAAGATTATA
Found at i:8101304 original size:105 final size:105
Alignment explanation
Indices: 8100779--8101304 Score: 545
Period size: 105 Copynumber: 5.0 Consensus size: 105
8100769 TAAAATGGTT
* * * * *
8100779 TGCCCAAAGGTCTTACAAATCTCAACATCTTTAAATGCTCATCCCAATTAGAGGCATTGAAACTT
1 TGCCCAAAGGTTTTACAAATCTCGATATCTTTAAATGCTCTTCCCAATCAGAGGCATTGAAACTT
* * * *
8100844 AT-AAAATTTAAAATTGTTTGCTTGGAGATCTTGAAGATTT
66 -TGAAAATTTAAAATGGTTTGCTCGGAGGTCTTGAAGATTA
* * * * *
8100884 TGTCCATAA-GTCTTACAAATCTCGACATCTTTAAATGCTCTTCCCAATCAGAAGCATTGAGACT
1 TGCCCA-AAGGTTTTACAAATCTCGATATCTTTAAATGCTCTTCCCAATCAGAGGCATTGAAACT
* * * * *
8100948 TTAAAAATTTAAAATGCTTTGCTCAGAGATTTTGAA-ATTA
65 TTGAAAATTTAAAATGGTTTGCTCGGAGGTCTTGAAGATTA
* * * * * * * * *
8100988 TACCTAAAGGTTTTACAAATCACAATATATTTGAATGCCCCTCCCAATAAGAGGCATTGAAACTT
1 TGCCCAAAGGTTTTACAAATCTCGATATCTTTAAATGCTCTTCCCAATCAGAGGCATTGAAACTT
* * * *
8101053 TGAAATTTTAAAATGGTTTGCCCAGAGGTCTTGGAGATTA
66 TGAAAATTTAAAATGGTTTGCTCGGAGGTCTTGAAGATTA
* * * * * * *
8101093 TACCTAAAGGTTTTACAAATCTCGATATCTTTAAATGTTTTTCCCAATTAAAGGCATTAAAACTT
1 TGCCCAAAGGTTTTACAAATCTCGATATCTTTAAATGCTCTTCCCAATCAGAGGCATTGAAACTT
* * *
8101158 TGAAAATTTAAAATGGGTTGCTCGAAGGTTTTGAAGATTA
66 TGAAAATTTAAAATGGTTTGCTCGGAGGTCTTGAAGATTA
* * *
8101198 TGCCCAAAGGTTTTTCAAATCTCGATATCTTTAAATGCTCTTTCTAATCAGAGGCATTGAAACTT
1 TGCCCAAAGGTTTTACAAATCTCGATATCTTTAAATGCTCTTCCCAATCAGAGGCATTGAAACTT
* * * * * * *
8101263 TGTAAATTTTAAATGTTTTTCTTGGAGGTCTTAAAAATTA
66 TGAAAATTTAAAATGGTTTGCTCGGAGGTCTTGAAGATTA
8101303 TG
1 TG
8101305 TCTGGAAGTC
Statistics
Matches: 346, Mismatches: 71, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
103 2 0.01
104 80 0.23
105 262 0.76
106 2 0.01
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.36
Consensus pattern (105 bp):
TGCCCAAAGGTTTTACAAATCTCGATATCTTTAAATGCTCTTCCCAATCAGAGGCATTGAAACTT
TGAAAATTTAAAATGGTTTGCTCGGAGGTCTTGAAGATTA
Found at i:8101310 original size:22 final size:21
Alignment explanation
Indices: 8101285--8101343 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
8101275 ATGTTTTTCT
8101285 TGGAGGTCTTAAAAATTATGTC
1 TGGAGGTCTTAAAAATTATG-C
* *
8101307 TGGAAGTCTTAAAGATTATGC
1 TGGAGGTCTTAAAAATTATGC
* *
8101328 TCAGAGGTCATAAAAA
1 T-GGAGGTCTTAAAAA
8101344 ATATATCTAG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 2 0.07
22 28 0.93
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (21 bp):
TGGAGGTCTTAAAAATTATGC
Found at i:8101887 original size:15 final size:15
Alignment explanation
Indices: 8101867--8101898 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8101857 TGTCTTTCTT
*
8101867 ATGATGCAGATGCAA
1 ATGATGCAAATGCAA
8101882 ATGATGCAAATGCAA
1 ATGATGCAAATGCAA
8101897 AT
1 AT
8101899 ATCTTTTTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (15 bp):
ATGATGCAAATGCAA
Found at i:8102062 original size:86 final size:85
Alignment explanation
Indices: 8101876--8102084 Score: 233
Period size: 86 Copynumber: 2.4 Consensus size: 85
8101866 TATGATGCAG
* * * *
8101876 ATGCAAATGATGCAAATGCAAATAT-CTTTTTTGGGATATAGATGTAAATGCAAATGTCTTTCTC
1 ATGC-AATGATGCAAATGCGAATGTCCTTTTTTGTGATATAGATGTAAATACAAATGTCTTTCTC
* **
8101940 ATGATGTACATGCAAGTGTGA
65 ATGATGCACATGCAAGTACGA
* * * *
8101961 ATGCAAGTGAAGCAAATGTGAATGTCCTTTTTTGTGATATAGATGTGAATACAAATGTCTTTTTC
1 ATGCAA-TGATGCAAATGCGAATGTCCTTTTTTGTGATATAGATGTAAATACAAATGTCTTTCTC
* *
8102026 ATGATGCATATGTAAGTACGA
65 ATGATGCACATGCAAGTACGA
* *
8102047 AGGTG-AATGATGCAAATACGAATGTCTTTTTTTGTGAT
1 A--TGCAATGATGCAAATGCGAATGTCCTTTTTTGTGAT
8102085 GCAGATGCAA
Statistics
Matches: 103, Mismatches: 17, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
84 2 0.02
85 18 0.17
86 79 0.77
87 2 0.02
88 2 0.02
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.36
Consensus pattern (85 bp):
ATGCAATGATGCAAATGCGAATGTCCTTTTTTGTGATATAGATGTAAATACAAATGTCTTTCTCA
TGATGCACATGCAAGTACGA
Found at i:8102100 original size:15 final size:15
Alignment explanation
Indices: 8102080--8102109 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8102070 GTCTTTTTTT
*
8102080 GTGATGCAGATGCAA
1 GTGATGCAAATGCAA
8102095 GTGATGCAAATGCAA
1 GTGATGCAAATGCAA
8102110 ATGTCTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.30, T:0.20
Consensus pattern (15 bp):
GTGATGCAAATGCAA
Found at i:8102178 original size:46 final size:47
Alignment explanation
Indices: 8102122--8102216 Score: 138
Period size: 46 Copynumber: 2.0 Consensus size: 47
8102112 GTCTTTTTTT
* * * *
8102122 GTGATGCAAATGTGAATGCAAATGTCTTTC-CATAATGCACATACAA
1 GTGATACAAATATGAATGCAAATGCCTTTCTCATAATGCACACACAA
*
8102168 GTGATACAAATATGAATGCAAATGCCTTTCTCATGATGCACACACAA
1 GTGATACAAATATGAATGCAAATGCCTTTCTCATAATGCACACACAA
8102215 GT
1 GT
8102217 ATGAATGTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
46 27 0.63
47 16 0.37
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (47 bp):
GTGATACAAATATGAATGCAAATGCCTTTCTCATAATGCACACACAA
Found at i:8103764 original size:125 final size:123
Alignment explanation
Indices: 8103506--8103873 Score: 332
Period size: 125 Copynumber: 2.9 Consensus size: 123
8103496 GGTGCATACC
* * * * *
8103506 TTTCTTTCTTTACTTTTTTTTTATTTTTTTTTGAAAACATTAGACTTCAATTTTAGTATTCTACT
1 TTTCTATCTTT-C-TTTTTTTT-TTTTTTTTT---AACATTTGACTTC-ATTTTAGCAATC-AAT
* * * * * *
8103571 TTCTTGAATTCTATTTTCCTAAAGCTTCATTCATTTATTGCCCTCGACTTTCATTTTTAAATTTC
58 TTCTTGAATTCTATTTTCCTGAAGCTTCATTCATTTTTTGCCCTCGACTCTCATCTTTAAAGTAC
8103636 A
123 A
*
8103637 TTTCTCTCTTTCTTTGTTTTTTTTTTTTTTAACATTTGACTTCATCTTTAGCAATCAATTTCTTG
1 TTTCTATCTTTCTTT-TTTTTTTTTTTTTTAACATTTGACTTCAT-TTTAGCAATCAATTTCTTG
* * * *
8103702 AATTCTATTTTCCTGAAGCTTCATTCATTTTTTG-TCTTGAACTCTCATCTTTGAGGTACA
64 AATTCTATTTTCCTGAAGCTTCATTCATTTTTTGCCCTCG-ACTCTCATCTTTAAAGTACA
* * * * *
8103762 TTT-TATC-TT-TTTTTTCTTTTTTTTTAAACATTT-ACTTTCATTTTCAACTATCAACTTCTTG
1 TTTCTATCTTTCTTTTTTTTTTTTTTTTTAACATTTGAC-TTCATTTT-AGCAATCAATTTCTTG
* * * *
8103823 GATTCTATTTTCTCTTGAAGCTTTATTCATTTTTTTGCCCTGGACTTTCAT
64 AATTCTATTTTC-C-TGAAGCTTCATTCA-TTTTTTGCCCTCGACTCTCAT
8103874 ATCTGAGGTG
Statistics
Matches: 202, Mismatches: 26, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
120 5 0.02
121 48 0.24
122 4 0.02
123 15 0.07
124 20 0.10
125 62 0.31
126 20 0.10
129 12 0.06
130 6 0.03
131 10 0.05
ACGTcount: A:0.20, C:0.18, G:0.07, T:0.56
Consensus pattern (123 bp):
TTTCTATCTTTCTTTTTTTTTTTTTTTTTAACATTTGACTTCATTTTAGCAATCAATTTCTTGAA
TTCTATTTTCCTGAAGCTTCATTCATTTTTTGCCCTCGACTCTCATCTTTAAAGTACA
Found at i:8111879 original size:15 final size:16
Alignment explanation
Indices: 8111859--8111889 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8111849 TGTGATTTGC
8111859 TTTGTT-TTTTTTTTT
1 TTTGTTGTTTTTTTTT
8111874 TTTGTTGTTTTTTTTT
1 TTTGTTGTTTTTTTTT
8111890 CTTGGTATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (16 bp):
TTTGTTGTTTTTTTTT
Found at i:8120349 original size:92 final size:91
Alignment explanation
Indices: 8120235--8120480 Score: 244
Period size: 92 Copynumber: 2.7 Consensus size: 91
8120225 AGGGTTTCAT
* * * *
8120235 AACTTTTAAAAATAGATCTAAAAGCTCATCTAGTTAGAGGCTCCATAATTTTTGAAAATATATCT
1 AACTTTTAAAAATAAATATAAAAGCTC-TCTAGTTAGAGGTTCCATAACTTTTGAAAATATATCT
*** *
8120300 AAAAGCTTTTTTTCTTAAAGGCTCCAC
65 AAAAGCTCCATTCCTTAAAGGCTCCAC
* * * * * *
8120327 AACTTTTAAAAATAAATATAAAAACTTCTCTCGTTAG-GAATTCCACAACTTTTGAAAATAGATT
1 AACTTTTAAAAATAAATATAAAAGC-TCTCTAGTTAGAG-GTTCCATAACTTTTGAAAATATATC
* *
8120391 TAAAAGCTCCATTCCTTAAAGGTTCCAT
64 TAAAAGCTCCATTCCTTAAAGGCTCCAC
* * * * *
8120419 AACTTTTGAAAATAAATTTAAAAGCTGTTCTTA-TTAGAGGTTCTATAACTTTTGAAATTATA
1 AACTTTTAAAAATAAATATAAAAGCT-CTC-TAGTTAGAGGTTCCATAACTTTTGAAAATATA
8120481 ACATAATAAC
Statistics
Matches: 123, Mismatches: 26, Indels: 10
0.77 0.16 0.06
Matches are distributed among these distances:
91 2 0.02
92 117 0.95
93 4 0.03
ACGTcount: A:0.39, C:0.15, G:0.10, T:0.37
Consensus pattern (91 bp):
AACTTTTAAAAATAAATATAAAAGCTCTCTAGTTAGAGGTTCCATAACTTTTGAAAATATATCTA
AAAGCTCCATTCCTTAAAGGCTCCAC
Found at i:8120460 original size:46 final size:45
Alignment explanation
Indices: 8120227--8120475 Score: 171
Period size: 46 Copynumber: 5.4 Consensus size: 45
8120217 TTTCATTAAG
* * * *
8120227 GGTTTCATAACTTTTAAAAATAGATCTAAAAGCTCATC-TAGTTAGA
1 GGTTCCATAACTTTTGAAAATAAATCTAAAAGCT-TTCTTA-TTAGA
* * * * * *
8120273 GGCTCCATAATTTTTGAAAATATATCTAAAAGCTTTTTTTCTTAAA
1 GGTTCCATAACTTTTGAAAATAAATCTAAAAGC-TTTCTTATTAGA
* * * * * **
8120319 GGCTCCACAACTTTTAAAAATAAATATAAAAACTTCTCTCGTTAG-
1 GGTTCCATAACTTTTGAAAATAAATCTAAAAGCTT-TCTTATTAGA
* * * * * * *
8120364 GAATTCCACAACTTTTGAAAATAGATTTAAAAGC-TCCATTCCTTAAA
1 G-GTTCCATAACTTTTGAAAATAAATCTAAAAGCTTTC-TT-ATTAGA
*
8120411 GGTTCCATAACTTTTGAAAATAAATTTAAAAGCTGTTCTTATTAGA
1 GGTTCCATAACTTTTGAAAATAAATCTAAAAGCT-TTCTTATTAGA
*
8120457 GGTTCTATAACTTTTGAAA
1 GGTTCCATAACTTTTGAAA
8120476 TTATAACATA
Statistics
Matches: 158, Mismatches: 36, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
44 1 0.01
45 5 0.03
46 145 0.92
47 5 0.03
48 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.37
Consensus pattern (45 bp):
GGTTCCATAACTTTTGAAAATAAATCTAAAAGCTTTCTTATTAGA
Found at i:8120673 original size:99 final size:101
Alignment explanation
Indices: 8120507--8120698 Score: 241
Period size: 99 Copynumber: 1.9 Consensus size: 101
8120497 ATTATGCCTT
* * * * *
8120507 GAGGTCTTACAAATTTAGACATTAAAATAGATTCAGCTCAAAAGGTTTACGAATCTTGCCTGAAG
1 GAGGTCCTACAAATTTAGACATTAAAACAAATTCAGCTCAAAAGGCTTACGAATCTTGCCAGAAG
*
8120572 GACTTTAAAATTTT-TTTTTTA-GAAATTATATCTA
66 GACTTTAAAATTTTCTTATTTAGGAAATTATATCTA
* * *
8120606 GAGGTCCTACAAATTTGGACATTGAAACAAATTTCA-CTCAAAAGGCTTATGAA-CTTTGCCCAG
1 GAGGTCCTACAAATTTAGACATTAAAACAAA-TTCAGCTCAAAAGGCTTACGAATC-TTG-CCAG
8120669 -AGGACTTTAAAATTTTCTTATTTAGGAAAT
63 AAGGACTTTAAAATTTTCTTATTTAGGAAAT
8120699 CTTTAAAATT
Statistics
Matches: 79, Mismatches: 9, Indels: 8
0.82 0.09 0.08
Matches are distributed among these distances:
98 1 0.01
99 60 0.76
100 13 0.16
101 5 0.06
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (101 bp):
GAGGTCCTACAAATTTAGACATTAAAACAAATTCAGCTCAAAAGGCTTACGAATCTTGCCAGAAG
GACTTTAAAATTTTCTTATTTAGGAAATTATATCTA
Found at i:8121218 original size:24 final size:24
Alignment explanation
Indices: 8121191--8121245 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
8121181 GATGATTCAT
*
8121191 ATATTACAACTGAGGAAAACTCAA
1 ATATCACAACTGAGGAAAACTCAA
* * **
8121215 ATATCACTACTGAGGAGAACTCGG
1 ATATCACAACTGAGGAAAACTCAA
8121239 ATATCAC
1 ATATCAC
8121246 CACCGAGATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.20, G:0.16, T:0.22
Consensus pattern (24 bp):
ATATCACAACTGAGGAAAACTCAA
Found at i:8121644 original size:30 final size:31
Alignment explanation
Indices: 8121592--8121707 Score: 128
Period size: 31 Copynumber: 3.8 Consensus size: 31
8121582 TATTGGTACA
*
8121592 AGCTAAAC-AGGGTTTAAATCTTATTAATGCC
1 AGCTAAACTA-GGCTTAAATCTTATTAATGCC
* * **
8121623 AGCGAAACT-GGCTTAGATCTTATTAATGTT
1 AGCTAAACTAGGCTTAAATCTTATTAATGCC
* * *
8121653 AGCTAAATTAGGCTTAAATCTCATTGATGCC
1 AGCTAAACTAGGCTTAAATCTTATTAATGCC
*
8121684 AACTAAACTAGGCTTAAATCTTAT
1 AGCTAAACTAGGCTTAAATCTTAT
8121708 CGGTGCCAAT
Statistics
Matches: 68, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
30 24 0.35
31 44 0.65
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (31 bp):
AGCTAAACTAGGCTTAAATCTTATTAATGCC
Found at i:8121690 original size:31 final size:31
Alignment explanation
Indices: 8121655--8121739 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
8121645 TTAATGTTAG
8121655 CTAAATTAGGCTTAAATCTCATTGATGCCAA
1 CTAAATTAGGCTTAAATCTCATTGATGCCAA
* * * *
8121686 CTAAACTAGGCTTAAATCTTATCGGTGCCAA
1 CTAAATTAGGCTTAAATCTCATTGATGCCAA
* * * *
8121717 TTAATTTGGGTTTAAATCTCATT
1 CTAAATTAGGCTTAAATCTCATT
8121740 AGTGGTCATT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (31 bp):
CTAAATTAGGCTTAAATCTCATTGATGCCAA
Found at i:8133400 original size:14 final size:14
Alignment explanation
Indices: 8133364--8133400 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
8133354 GATGAGTGTA
8133364 TATAATTATTTATT
1 TATAATTATTTATT
* *
8133378 TTTATTTATTTATT
1 TATAATTATTTATT
8133392 TATAATTAT
1 TATAATTAT
8133401 AATTAAACTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (14 bp):
TATAATTATTTATT
Found at i:8134540 original size:22 final size:24
Alignment explanation
Indices: 8134507--8134552 Score: 62
Period size: 22 Copynumber: 2.0 Consensus size: 24
8134497 TTTGCTCGGT
8134507 CTTCATTGAGAA-ATAT-TATATA
1 CTTCATTGAGAATATATATATATA
8134529 CTTCATCT-AGAATATATATATATA
1 CTTCAT-TGAGAATATATATATATA
8134553 TATATATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 10 0.48
23 5 0.24
24 6 0.29
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (24 bp):
CTTCATTGAGAATATATATATATA
Found at i:8140282 original size:18 final size:18
Alignment explanation
Indices: 8140259--8140300 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
8140249 GGAATGGAGT
8140259 AAATGGATGTCCTT-GGCA
1 AAATGGATGT-CTTAGGCA
*
8140277 AAATGGCTGTCTTAGGCA
1 AAATGGATGTCTTAGGCA
8140295 AAATGG
1 AAATGG
8140301 TGGTACAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 3 0.14
18 19 0.86
ACGTcount: A:0.31, C:0.14, G:0.29, T:0.26
Consensus pattern (18 bp):
AAATGGATGTCTTAGGCA
Found at i:8144921 original size:21 final size:20
Alignment explanation
Indices: 8144883--8144929 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
8144873 AATAATTTTA
*
8144883 AAATATTTAGTTAATATAATT
1 AAATATTTAGTTAATAT-ATG
*
8144904 AAATATTATA-TTATTATATG
1 AAATATT-TAGTTAATATATG
8144924 AAATAT
1 AAATAT
8144930 AATTTCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 8 0.35
21 13 0.57
22 2 0.09
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (20 bp):
AAATATTTAGTTAATATATG
Found at i:8145280 original size:14 final size:15
Alignment explanation
Indices: 8145261--8145289 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8145251 TAATCAAATT
8145261 AAGAAAAA-AAAAAA
1 AAGAAAAAGAAAAAA
8145275 AAGAAAAAGAAAAAA
1 AAGAAAAAGAAAAAA
8145290 CAACATTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAGAAAAAGAAAAAA
Found at i:8145887 original size:15 final size:16
Alignment explanation
Indices: 8145851--8145889 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
8145841 CATGTTGTAA
8145851 AAGAAAAGGAAAAAAG
1 AAGAAAAGGAAAAAAG
**
8145867 TCGAAAAGG-AAAAAG
1 AAGAAAAGGAAAAAAG
8145882 AAGAAAAG
1 AAGAAAAG
8145890 AAAGTTTCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 1
0.79 0.17 0.04
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.69, C:0.03, G:0.26, T:0.03
Consensus pattern (16 bp):
AAGAAAAGGAAAAAAG
Found at i:8147826 original size:20 final size:22
Alignment explanation
Indices: 8147801--8147847 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
8147791 TGATTTTTTT
8147801 TCTTTTC-AC-TTTCTTCCCTC
1 TCTTTTCTACTTTTCTTCCCTC
**
8147821 TCTTTTCTACTTTTCTTTTCTC
1 TCTTTTCTACTTTTCTTCCCTC
8147843 TCTTT
1 TCTTT
8147848 CTTTCAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 2 0.09
22 14 0.61
ACGTcount: A:0.04, C:0.32, G:0.00, T:0.64
Consensus pattern (22 bp):
TCTTTTCTACTTTTCTTCCCTC
Found at i:8148265 original size:22 final size:24
Alignment explanation
Indices: 8148231--8148287 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
8148221 TATTACATAG
*
8148231 TTTAAT-TATTTTTTAGATTT-TA
1 TTTAATATATTTTCTAGATTTGTA
*
8148253 TTTAATATATTTTCTATATTTGTA
1 TTTAATATATTTTCTAGATTTGTA
*
8148277 ATTAATA-ATTT
1 TTTAATATATTT
8148288 AATTCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
22 6 0.20
23 16 0.53
24 8 0.27
ACGTcount: A:0.32, C:0.02, G:0.04, T:0.63
Consensus pattern (24 bp):
TTTAATATATTTTCTAGATTTGTA
Found at i:8148679 original size:28 final size:29
Alignment explanation
Indices: 8148648--8148707 Score: 70
Period size: 28 Copynumber: 2.1 Consensus size: 29
8148638 TTTATATGAC
*
8148648 TATTGTGGAAATTT-AGAAAATT-TTAATT
1 TATTGTGG-AATTTGAGAAAATTGTGAATT
* *
8148676 TATTGTTGAATTTGTGAAAATTGTGAATT
1 TATTGTGGAATTTGAGAAAATTGTGAATT
8148705 TAT
1 TAT
8148708 GAAATTATTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 5 0.19
28 14 0.52
29 8 0.30
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.48
Consensus pattern (29 bp):
TATTGTGGAATTTGAGAAAATTGTGAATT
Found at i:8148704 original size:17 final size:18
Alignment explanation
Indices: 8148677--8148711 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8148667 ATTTTAATTT
*
8148677 ATTGTTGAATTTGTGAAA
1 ATTGTTGAATTTATGAAA
8148695 ATTG-TGAATTTATGAAA
1 ATTGTTGAATTTATGAAA
8148712 TTATTAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (18 bp):
ATTGTTGAATTTATGAAA
Found at i:8150649 original size:18 final size:18
Alignment explanation
Indices: 8150616--8150655 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
8150606 CCAATTTGGT
*
8150616 TTTTATTTTGTATTTTTA
1 TTTTATTTTATATTTTTA
* *
8150634 TTTTATTTTATTTTTTTC
1 TTTTATTTTATATTTTTA
8150652 TTTT
1 TTTT
8150656 GTATTTTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.12, C:0.03, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTATTTTATATTTTTA
Found at i:8150676 original size:31 final size:31
Alignment explanation
Indices: 8150615--8150684 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
8150605 CCCAATTTGG
*
8150615 TTTTTATTTTGTATTTTTATTTTATTTTATT
1 TTTTTATTTTGTATTTTTATTTTATATTATT
*
8150646 TTTTTCTTTTGTA-TTTTATGTATT-TATTATT
1 TTTTTATTTTGTATTTTTAT-T-TTATATTATT
*
8150677 TATTTATT
1 TTTTTATT
8150685 ATTACTATGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
30 6 0.18
31 25 0.76
32 2 0.06
ACGTcount: A:0.17, C:0.01, G:0.04, T:0.77
Consensus pattern (31 bp):
TTTTTATTTTGTATTTTTATTTTATATTATT
Found at i:8150679 original size:4 final size:4
Alignment explanation
Indices: 8150660--8150829 Score: 55
Period size: 4 Copynumber: 41.5 Consensus size: 4
8150650 TCTTTTGTAT
* * * * *
8150660 TTTA TGTA TTTA -TTA TTTA TTTA -TTA TTACTA TGTA TTAA TATA TGTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA
* * * * * * *
8150708 TATC TTTA TTTA TTTA TTTT TTTC TGTTA -ATA TGTA TTTTA TTTA TCTA
1 TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA -TTTA TTTA TTTA
* * * *
8150757 GTTA TATA TTTA -TTA TTATAA TTTA TTTA -TTA TTTTT TTTA TTTA TCTTG
1 TTTA TTTA TTTA TTTA TT-T-A TTTA TTTA TTTA -TTTA TTTA TTTA T-TTA
*
8150807 TAGTA TTT- TTTA TTTA TCTTA TT
1 T-TTA TTTA TTTA TTTA T-TTA TT
8150830 ATTATTATTA
Statistics
Matches: 120, Mismatches: 31, Indels: 30
0.66 0.17 0.17
Matches are distributed among these distances:
3 17 0.14
4 79 0.66
5 18 0.15
6 6 0.05
ACGTcount: A:0.26, C:0.04, G:0.05, T:0.66
Consensus pattern (4 bp):
TTTA
Found at i:8150680 original size:20 final size:19
Alignment explanation
Indices: 8150624--8150681 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
8150614 GTTTTTATTT
8150624 TGTATTTTTATTTTATTTTA
1 TGTATTTTTA-TTTATTTTA
* *
8150644 T-TTTTTTCTTTTGTATTTTA
1 TGTATTTT-TATT-TATTTTA
8150664 TGTATTTATTATTTATTT
1 TGTATTT-TTATTTATTT
8150682 ATTATTACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
19 7 0.23
20 15 0.50
21 7 0.23
22 1 0.03
ACGTcount: A:0.17, C:0.02, G:0.05, T:0.76
Consensus pattern (19 bp):
TGTATTTTTATTTATTTTA
Found at i:8150844 original size:21 final size:21
Alignment explanation
Indices: 8150766--8150846 Score: 62
Period size: 21 Copynumber: 3.9 Consensus size: 21
8150756 AGTTATATAT
8150766 TTATTATTA-TAATTTAT-TTA
1 TTATTATTATTAA-TTATCTTA
* * *
8150786 TTATTTTTTTTATTTATCTTGTA
1 TTATTATTATTAATTATC-T-TA
* *
8150809 GTATT-TT-TTATTTATCTTA
1 TTATTATTATTAATTATCTTA
8150828 TTATTATTATTAATTATCT
1 TTATTATTATTAATTATCT
8150847 GTTACATTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
19 6 0.12
20 14 0.29
21 20 0.41
22 3 0.06
23 6 0.12
ACGTcount: A:0.26, C:0.04, G:0.02, T:0.68
Consensus pattern (21 bp):
TTATTATTATTAATTATCTTA
Found at i:8150886 original size:20 final size:20
Alignment explanation
Indices: 8150861--8150906 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
8150851 CATTTTTTTC
* *
8150861 TTTTTTCGTTTATCTGATTT
1 TTTTTTCATTTATCAGATTT
8150881 TTTTTTCATTTATCAGATTT
1 TTTTTTCATTTATCAGATTT
8150901 TTTTTT
1 TTTTTT
8150907 TGGACTGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.13, C:0.09, G:0.07, T:0.72
Consensus pattern (20 bp):
TTTTTTCATTTATCAGATTT
Found at i:8150902 original size:21 final size:21
Alignment explanation
Indices: 8150856--8150907 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
8150846 TGTTACATTT
* *
8150856 TTTTCTTTTTTCGTTTATCTGA
1 TTTT-TTTTTTCATTTATCAGA
8150878 -TTTTTTTTTCATTTATCAGA
1 TTTTTTTTTTCATTTATCAGA
8150898 TTTTTTTTTT
1 TTTTTTTTTT
8150908 GGACTGAGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.12, C:0.10, G:0.06, T:0.73
Consensus pattern (21 bp):
TTTTTTTTTTCATTTATCAGA
Found at i:8151837 original size:17 final size:16
Alignment explanation
Indices: 8151817--8151894 Score: 76
Period size: 17 Copynumber: 5.0 Consensus size: 16
8151807 ATTTAATGCT
8151817 CTTTTATCTTTATTTTA
1 CTTTTAT-TTTATTTTA
*
8151834 CTTTTATTTTTGTTTTA
1 CTTTTA-TTTTATTTTA
8151851 CTTTT-TTTTATTTTCA
1 CTTTTATTTTATTTT-A
*
8151867 CTTTCATTTTA--TTA
1 CTTTTATTTTATTTTA
8151881 -TTTTATTTT-TTTTA
1 CTTTTATTTTATTTTA
8151895 AATAAAATCG
Statistics
Matches: 52, Mismatches: 4, Indels: 13
0.75 0.06 0.19
Matches are distributed among these distances:
13 8 0.15
14 4 0.08
15 10 0.19
16 5 0.10
17 24 0.46
18 1 0.02
ACGTcount: A:0.15, C:0.09, G:0.01, T:0.74
Consensus pattern (16 bp):
CTTTTATTTTATTTTA
Found at i:8151843 original size:5 final size:5
Alignment explanation
Indices: 8151818--8151894 Score: 54
Period size: 5 Copynumber: 15.0 Consensus size: 5
8151808 TTTAATGCTC
*
8151818 TTTTA TCTTTA TTTTA CTTTTA TTTTTG TTTTA CTTTT- TTTTA TTTTCA
1 TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTT-A
*
8151867 CTTTCA TTTTA --TTA TTTTA TTTT- TTTTA
1 -TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA
8151895 AATAAAATCG
Statistics
Matches: 58, Mismatches: 5, Indels: 18
0.72 0.06 0.22
Matches are distributed among these distances:
3 3 0.05
4 8 0.14
5 24 0.41
6 20 0.34
7 3 0.05
ACGTcount: A:0.16, C:0.08, G:0.01, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:8151937 original size:17 final size:16
Alignment explanation
Indices: 8151906--8151936 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
8151896 ATAAAATCGA
8151906 AAAAAAATCAATTTTC
1 AAAAAAATCAATTTTC
8151922 AAAAAAATCAATTTT
1 AAAAAAATCAATTTT
8151937 TGAGGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAAAAATCAATTTTC
Found at i:8152009 original size:57 final size:58
Alignment explanation
Indices: 8151908--8152196 Score: 343
Period size: 57 Copynumber: 4.9 Consensus size: 58
8151898 AAAATCGAAA
*
8151908 AAAAATCAATTTTCAAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
1 AAAAATAAATTTTCAAAAAAA--AATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
*
8151968 AAAAATAAATTTTC-AAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
1 AAAAATAAATTTTCAAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
** * *
8152025 AAAAATAAATTTTCAAAAAAAAGGGCTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAATAAATTTTCAAAAAAAA--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
* * * *
8152085 GAAAATAAATTTTCAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTC
1 AAAAATAAATTTTCAAAAAAAAATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTT
* * * * * * *
8152143 GAGATTAACA-TTTCTAAAAAATATTTTCGA-AAAAAGTTGAAAGTATCAATTTTT
1 AAAAATAA-ATTTTCAAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
8152197 TCTACACAAA
Statistics
Matches: 206, Mismatches: 17, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
57 74 0.36
58 59 0.29
59 7 0.03
60 66 0.32
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (58 bp):
AAAAATAAATTTTCAAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
Found at i:8152162 original size:117 final size:115
Alignment explanation
Indices: 8151908--8152195 Score: 327
Period size: 117 Copynumber: 2.5 Consensus size: 115
8151898 AAAATCGAAA
* * *
8151908 AAAAATCAATTTTCAAAAAAATCA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAA
1 AAAAATAAATTTTCAAAAAAA--AGA-TTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* * *
8151972 ATAAATTTTCAAAAAAAGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
63 ATAAATTTTCAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTC
* *
8152025 AAAAATAAATTTTCAAAAAAAAGGGCTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAA
1 AAAAATAAATTTTCAAAAAAAA--GATTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
8152090 TAAATTTTCAAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTC
64 TAAATTTTCAAAAAAA-ATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTC
* * * * *
8152143 GAGATTAACA-TTTC-TAAAAAATATTTTCGAA--AAAAGTTGAAAGTATCAATTTT
1 AAAAATAA-ATTTTCAAAAAAAAGATTTT--AAGGAAAAGTTGAAAGTATCAATTTT
8152196 TTCTACACAA
Statistics
Matches: 149, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
115 27 0.18
117 82 0.55
118 39 0.26
119 1 0.01
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.35
Consensus pattern (115 bp):
AAAAATAAATTTTCAAAAAAAAGATTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATA
AATTTTCAAAAAAAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTC
Found at i:8153152 original size:403 final size:403
Alignment explanation
Indices: 8152406--8154016 Score: 3064
Period size: 403 Copynumber: 4.0 Consensus size: 403
8152396 GACTAACATT
8152406 AAAATTATGTTGGTACCATCTTTTGAT-GGCGTTGTGAAGGGTGATATAACCTTCCTCACACGTA
1 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTG-AGGGTGATATAACCTTCCTCACACGTA
8152470 ACCGAACTCCCCGAACTCTG-TCTGGTTAGTAAACCTGAACCGATTA-TTTAGGGACCCTTAAAT
65 ACCGAACT-CCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAAT
8152533 TTAGGTGTTCCGCT--AAGGACAGATTTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGAT
129 TTAGGTGTTCC-CTAAAAGGACAGA-TTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGAT
8152596 TGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACG
192 TGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACG
8152661 AAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCA
257 AAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCA
8152726 TGTAATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTG
322 TGTAATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTG
8152791 ACCTTTTGATCCATCAA
387 ACCTTTTGATCCATCAA
8152808 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
1 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
8152873 CCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAATTT
66 CCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAATTT
8152938 AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGATTGGT
131 AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGATTGGT
8153003 GGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAAT
196 GGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAAT
8153068 TGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTA
261 TGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTA
8153133 ATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCT
326 ATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCT
8153198 TTTGATCCATCAA
391 TTTGATCCATCAA
8153211 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
1 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
8153276 CCGAACTCCCGAACTCTGTTCTGGTTAGT-AACCTGAACCGATTATTTTAGGGACCCTT-AATTT
66 CCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAATTT
*
8153339 AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCAACCTAGATAAAAAAAAAATTGG
131 AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGC-ACCTAGATAAAAAAAAGATTGG
*
8153404 TGGCGACTCCCTTAAGTCAATGTTTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAA
195 TGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAA
8153469 TTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAA-AAGATTC-ATCAAGTGCCATGT
260 TTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGT
8153532 -ATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTC-ATTTTTAGACATCCCAAGTGACC
325 AATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACC
8153595 TTTTGATCCATCAA
390 TTTTGATCCATCAA
8153609 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
1 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
8153674 CCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAATTT
66 CCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAATTT
8153739 AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGATTGGT
131 AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGATTGGT
*
8153804 GGCGACTCCCTTAAGTCAATGTTTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAAT
196 GGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAAT
8153869 TGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTA
261 TGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTA
*
8153934 ATGGTAATGGTGGAGAGCTAGATCTTACAAAACATTTTTCAATTTTTAGACATCCCAAGTGACCT
326 ATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCT
8153999 TTTGATCCATCAA
391 TTTGATCCATCAA
8154012 AAAAT
1 AAAAT
8154017 CACAATCGAT
Statistics
Matches: 1193, Mismatches: 4, Indels: 23
0.98 0.00 0.02
Matches are distributed among these distances:
398 131 0.11
399 197 0.17
400 68 0.06
401 79 0.07
402 285 0.24
403 424 0.36
404 9 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (403 bp):
AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTTCCTCACACGTAA
CCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGGACCCTTAAATTT
AGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGATTGGT
GGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAAT
TGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTA
ATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCT
TTTGATCCATCAA
Found at i:8153951 original size:801 final size:805
Alignment explanation
Indices: 8152406--8154016 Score: 3062
Period size: 801 Copynumber: 2.0 Consensus size: 805
8152396 GACTAACATT
8152406 AAAATTATGTTGGTACCATCTTTTGATGGCGTTGTGAAGGGTGATATAACCTTCCTCACACGTAA
1 AAAATTATGTTGGTACCATCTTTTGATGGCGTTGTGAAGGGTGATATAACCTTCCTCACACGTAA
8152471 CCGAACTCCCCGAACTCTGTCTGGTTAGTAAACCTGAACCGATTATTTAGGGACCCTTAAATTTA
66 CCGAACTCCCCGAACTCTGTCTGGTTAGTAAACCTGAACCGATTATTTAGGGACCCTTAAATTTA
*
8152536 GGTGTTCCGCTAAGGACAGATTTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAGATTGGTG
131 GGTGTTCCGCTAAGGACAGATTTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAAATTGGTG
8152601 GCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAATT
196 GCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAATT
8152666 GCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTAA
261 GCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTAA
8152731 TGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCTT
326 TGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCTT
8152796 TTGATCCATCAAAAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTT
391 TTGATCCATCAAAAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTT
8152861 CCTCACACGTAACCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGG
456 CCTCACACGTAACCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGG
8152926 ACCCTTAAATTTAGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAA
521 ACCCTTAAATTTAGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAA
8152991 AAAAAGATTGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTAT
586 AAAAAGATTGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTAT
8153056 GACAAACGAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATC
651 GACAAACGAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATC
*
8153121 AAGTGCCATGTAATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACAT
716 AAGTGCCATGTAATGGTAATGGTGGAGAGCTAGATCTTACAAAACATTTTTCAATTTTTAGACAT
8153186 CCCAAGTGACCTTTTGATCCATCAA
781 CCCAAGTGACCTTTTGATCCATCAA
8153211 AAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTG-AGGGTGATATAACCTTCCTCACACGTA
1 AAAATTATGTTGGTACCATCTTTTGAT-GGCGTTGTGAAGGGTGATATAACCTTCCTCACACGTA
8153275 ACCGAACT-CCCGAACTCTGTTCTGGTTAGT-AACCTGAACCGATTATTTTAGGGACCCTT-AAT
65 ACCGAACTCCCCGAACTCTG-TCTGGTTAGTAAACCTGAACCGATTA-TTTAGGGACCCTTAAAT
8153337 TTAGGTGTTCC-CTAAAAGGACAGA-TTTCATAGGTGGCCAATTGCAACCTAGATAAAAAAAAAA
128 TTAGGTGTTCCGCT--AAGGACAGATTTTCATAGGTGGCCAATTGC-ACCTAGATAAAAAAAAAA
*
8153400 TTGGTGGCGACTCCCTTAAGTCAATGTTTAGCGATAGATCCCCGGATCTAGACGTTATGACAAAC
190 TTGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAAC
8153465 GAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAA-AAGATTC-ATCAAGTGCC
255 GAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCC
8153528 ATGT-ATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTC-ATTTTTAGACATCCCAAGT
320 ATGTAATGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGT
8153591 GACCTTTTGATCCATCAAAAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATAT
385 GACCTTTTGATCCATCAAAAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATAT
8153656 AACCTTCCTCACACGTAACCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATT
450 AACCTTCCTCACACGTAACCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATT
8153721 TTAGGGACCCTTAAATTTAGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTA
515 TTAGGGACCCTTAAATTTAGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTA
*
8153786 GATAAAAAAAAGATTGGTGGCGACTCCCTTAAGTCAATGTTTAGCGATAGATCCCCGGATCTAGA
580 GATAAAAAAAAGATTGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGA
8153851 CGTTATGACAAACGAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGAT
645 CGTTATGACAAACGAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGAT
8153916 TCAATCAAGTGCCATGTAATGGTAATGGTGGAGAGCTAGATCTTACAAAACATTTTTCAATTTTT
710 TCAATCAAGTGCCATGTAATGGTAATGGTGGAGAGCTAGATCTTACAAAACATTTTTCAATTTTT
8153981 AGACATCCCAAGTGACCTTTTGATCCATCAA
775 AGACATCCCAAGTGACCTTTTGATCCATCAA
8154012 AAAAT
1 AAAAT
8154017 CACAATCGAT
Statistics
Matches: 796, Mismatches: 4, Indels: 16
0.98 0.00 0.02
Matches are distributed among these distances:
801 443 0.56
802 40 0.05
803 16 0.02
804 67 0.08
805 221 0.28
806 9 0.01
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31
Consensus pattern (805 bp):
AAAATTATGTTGGTACCATCTTTTGATGGCGTTGTGAAGGGTGATATAACCTTCCTCACACGTAA
CCGAACTCCCCGAACTCTGTCTGGTTAGTAAACCTGAACCGATTATTTAGGGACCCTTAAATTTA
GGTGTTCCGCTAAGGACAGATTTTCATAGGTGGCCAATTGCACCTAGATAAAAAAAAAATTGGTG
GCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTATGACAAACGAAATT
GCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATCAAGTGCCATGTAA
TGGTAATGGTGGAGAGCTAGATCTTACGAAACATTTTTCAATTTTTAGACATCCCAAGTGACCTT
TTGATCCATCAAAAAATTATGTTGGTACCATCTTTTGATGGGCGTTGTGAGGGTGATATAACCTT
CCTCACACGTAACCGAACTCCCGAACTCTGTTCTGGTTAGTAAACCTGAACCGATTATTTTAGGG
ACCCTTAAATTTAGGTGTTCCCTAAAAGGACAGATTTCATAGGTGGCCAATTGCACCTAGATAAA
AAAAAGATTGGTGGCGACTCCCTTAAGTCAATGTCTAGCGATAGATCCCCGGATCTAGACGTTAT
GACAAACGAAATTGCATAATTTTGCTTCTTGTATTTTGAACCTAATGTTCAAACAAGATTCAATC
AAGTGCCATGTAATGGTAATGGTGGAGAGCTAGATCTTACAAAACATTTTTCAATTTTTAGACAT
CCCAAGTGACCTTTTGATCCATCAA
Found at i:8155771 original size:36 final size:37
Alignment explanation
Indices: 8155724--8155811 Score: 126
Period size: 37 Copynumber: 2.4 Consensus size: 37
8155714 AACAATGGAT
* *
8155724 AAAAAATGAAAAAAA-AAAGAAAAAAAA-AGATGATAA
1 AAAAAATGAAAAAAATAAAGAAAAAAAAGAGA-AAGAA
*
8155760 AAAAAATGAAAAAAATAGAGAAAAAAAAGAGAAAGAA
1 AAAAAATGAAAAAAATAAAGAAAAAAAAGAGAAAGAA
8155797 AAAAAATGAAAAAAA
1 AAAAAATGAAAAAAA
8155812 GAGATTCAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
36 15 0.32
37 29 0.62
38 3 0.06
ACGTcount: A:0.81, C:0.00, G:0.12, T:0.07
Consensus pattern (37 bp):
AAAAAATGAAAAAAATAAAGAAAAAAAAGAGAAAGAA
Found at i:8155812 original size:24 final size:25
Alignment explanation
Indices: 8155724--8155815 Score: 95
Period size: 24 Copynumber: 3.8 Consensus size: 25
8155714 AACAATGGAT
*
8155724 AAAAAATGAAAAAAAAAAGAAA-AA
1 AAAAAATGAAAAAAAAGAGAAAGAA
*
8155748 AAAAGATGATAAAAAAA-ATGAAA-AA
1 AAAAAATGA-AAAAAAAGA-GAAAGAA
* *
8155773 AATAGA-GAAAAAAAAGAGAAAGAA
1 AAAAAATGAAAAAAAAGAGAAAGAA
8155797 AAAAAATG-AAAAAAAGAGA
1 AAAAAATGAAAAAAAAGAGA
8155816 TTCAAATTGA
Statistics
Matches: 59, Mismatches: 4, Indels: 10
0.81 0.05 0.14
Matches are distributed among these distances:
23 11 0.19
24 29 0.49
25 19 0.32
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (25 bp):
AAAAAATGAAAAAAAAGAGAAAGAA
Found at i:8157572 original size:41 final size:41
Alignment explanation
Indices: 8157530--8158049 Score: 432
Period size: 42 Copynumber: 12.4 Consensus size: 41
8157520 AAGTTAAGGT
* ** * *
8157530 GCCTCTGTTTAGAGAAGTAATTTACTTTTCAAAGTTGTGGT
1 GCCTCTGATTAGAGAAGCCATTTACTTTTCAAAGTTGTTGA
* * * *
8157571 GCCTCT-ATTTAGATG-AGCAATTTACTTTCCAAA--AGTTAA
1 GCCTCTGA-TTAGA-GAAGCCATTTACTTTTCAAAGTTGTTGA
*
8157610 GCCTCTGATTAG-GAGAGCCATTTACTTTTCAAAGTTGTTAA
1 GCCTCTGATTAGAGA-AGCCATTTACTTTTCAAAGTTGTTGA
* * * * *
8157651 GCCTTTGATTAGAAAAGTCATTTATTTTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGAAGCCATTTA--CTTTTCAAAGTTGTTGA
* *
8157694 GCCTCTGATTAGAGGAGTCATTTACTTTTCAAAGTTGTTGA
1 GCCTCTGATTAGAGAAGCCATTTACTTTTCAAAGTTGTTGA
* *
8157735 GCCTCTGATTAGAGGAA-CCATTTATTTTTCCAAAGTCGTTGA
1 GCCTCTGATTAGA-GAAGCCATTTACTTTT-CAAAGTTGTTGA
* *
8157777 GCCTCTGATTAGATG-AGCCATTTATTTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGA-GAAGCCATTTA-CTTTTCAAAGTTGTTGA
*
8157819 ACCTCTGATTAGATG-AGCCATTTACTTTTCAAAGTTGTTGA
1 GCCTCTGATTAGA-GAAGCCATTTACTTTTCAAAGTTGTTGA
* * *
8157860 GCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGA
1 GCCTCTGATTAGAGAAGCCATTTA-CTTTTCAAAGTTGTTGA
* * * * * **
8157902 GCCTCTGATTAAATAGGCCATTTATTTTTTCAAAATCATTGA
1 GCCTCTGATTAGAGAAGCCATTTA-CTTTTCAAAGTTGTTGA
* *
8157944 GCCTCTGATTAGA-AGAGCCTTATTTATTTTTCAAAAATTGTTGA
1 GCCTCTGATTAGAGA-AGCC--ATTTACTTTTC-AAAGTTGTTGA
* * *
8157988 GCCTCTGATTAGAGGAGCTTTATTTA-TGTTTCTTAAAGTTGTTAA
1 GCCTCTGATTAGAGAAGC--CATTTACT-TTTC--AAAGTTGTTGA
*
8158033 GCCTCTGCTTA-AGAAGC
1 GCCTCTGATTAGAGAAGC
8158050 TTTGATCAAA
Statistics
Matches: 405, Mismatches: 49, Indels: 47
0.81 0.10 0.09
Matches are distributed among these distances:
37 1 0.00
39 28 0.07
40 2 0.00
41 127 0.31
42 137 0.34
43 47 0.12
44 44 0.11
45 19 0.05
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (41 bp):
GCCTCTGATTAGAGAAGCCATTTACTTTTCAAAGTTGTTGA
Found at i:8157782 original size:42 final size:42
Alignment explanation
Indices: 8157609--8158012 Score: 482
Period size: 42 Copynumber: 9.7 Consensus size: 42
8157599 CCAAAAGTTA
* * *
8157609 AGCCTCTGATTAG-GAGAGCCATTTA-CTTTTCAAAGTTGTTA
1 AGCCTCTGATTAGAG-GAGCCATTTATTTTTTCAAAGTCGTTG
* ** *
8157650 AGCCTTTGATTAGAAAAGTCATTTATTTTTTTCAAAGTCGTTG
1 AGCCTCTGATTAGAGGAGCCATTTA-TTTTTTCAAAGTCGTTG
* * *
8157693 AGCCTCTGATTAGAGGAGTCATTTA-CTTTTCAAAGTTGTTG
1 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
* *
8157734 AGCCTCTGATTAGAGGAACCATTTATTTTTCCAAAGTCGTTG
1 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
*
8157776 AGCCTCTGATTAGATGAGCCATTTATTTTTTCAAAGTCGTTG
1 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
* * * *
8157818 AACCTCTGATTAGATGAGCCATTTA-CTTTTCAAAGTTGTTG
1 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
8157859 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
1 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
** * *
8157901 AGCCTCTGATTA-AATAGGCCATTTATTTTTTCAAAATCATTG
1 AGCCTCTGATTAGAGGA-GCCATTTATTTTTTCAAAGTCGTTG
* * *
8157943 AGCCTCTGATTAGAAGAGCCTTATTTA-TTTTTCAAAAATTGTTG
1 AGCCTCTGATTAGAGGAGCC--ATTTATTTTTTC-AAAGTCGTTG
8157987 AGCCTCTGATTAGAGGAG-C-TTTATTT
1 AGCCTCTGATTAGAGGAGCCATTTATTT
8158013 ATGTTTCTTA
Statistics
Matches: 317, Mismatches: 35, Indels: 22
0.85 0.09 0.06
Matches are distributed among these distances:
40 4 0.01
41 98 0.31
42 140 0.44
43 45 0.14
44 30 0.09
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (42 bp):
AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTG
Found at i:8157805 original size:125 final size:123
Alignment explanation
Indices: 8157609--8158012 Score: 544
Period size: 125 Copynumber: 3.2 Consensus size: 123
8157599 CCAAAAGTTA
* * * * * *
8157609 AGCCTCTGATTAG-GAGAGCCATTTACTTTTCAAAGTTGTTAAGCCTTTGATTAGAAAAGTCATT
1 AGCCTCTGATTAGAG-GAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAG-ATAGCCATT
*
8157673 TATTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGTCATTTACTTTTCAAAGTTGTTG
64 TA-TTTTTTCAAAGTCGTTGAGCCTCTGATTAGAAGAGTCATTTACTTTTCAAAGTTGTTG
*
8157734 AGCCTCTGATTAGAGGAACCATTTATTTTTCCAAAGTCGTTGAGCCTCTGATTAGATGAGCCATT
1 AGCCTCTGATTAGAGGAGCCATTTATTTTT-CAAAGTCGTTGAGCCTCTGATTAGAT-AGCCATT
* * *
8157799 TATTTTTTCAAAGTCGTTGAACCTCTGATTAGATGAGCCATTTACTTTTCAAAGTTGTTG
64 TATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAAGAGTCATTTACTTTTCAAAGTTGTTG
*
8157859 AGCCTCTGATTAGAGGAGCCATTTATTTTTTCAAAGTCGTTGAGCCTCTGATTAAATAGGCCATT
1 AGCCTCTGATTAGAGGAGCCATTTA-TTTTTCAAAGTCGTTGAGCCTCTGATTAGATA-GCCATT
* * * * *
8157924 TATTTTTTCAAAATCATTGAGCCTCTGATTAGAAGAGCCTTATTTATTTTTCAAAAATTGTTG
64 TATTTTTTCAAAGTCGTTGAGCCTCTGATTAGAAGAG--TCATTTACTTTTC-AAAGTTGTTG
8157987 AGCCTCTGATTAGAGGAG-C-TTTATTT
1 AGCCTCTGATTAGAGGAGCCATTTATTT
8158013 ATGTTTCTTA
Statistics
Matches: 251, Mismatches: 20, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
124 1 0.00
125 173 0.69
126 39 0.16
127 11 0.04
128 27 0.11
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (123 bp):
AGCCTCTGATTAGAGGAGCCATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGATAGCCATTTA
TTTTTTCAAAGTCGTTGAGCCTCTGATTAGAAGAGTCATTTACTTTTCAAAGTTGTTG
Found at i:8158392 original size:30 final size:32
Alignment explanation
Indices: 8158347--8158418 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 32
8158337 TATCTATTAA
* *
8158347 TATTTTTATTATTTATCTA-CTTTTATTTAT-
1 TATTATTAATATTTATCTATCTTTTATTTATC
8158377 TATTATTAATATTTATCTATTCCTTTTATTTATC
1 TATTATTAATATTTATCTA-T-CTTTTATTTATC
8158411 TAATTATT
1 T-ATTATT
8158419 TTTTTTGTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 17 0.49
33 11 0.31
34 1 0.03
35 6 0.17
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.65
Consensus pattern (32 bp):
TATTATTAATATTTATCTATCTTTTATTTATC
Found at i:8158420 original size:17 final size:16
Alignment explanation
Indices: 8158330--8158420 Score: 58
Period size: 17 Copynumber: 5.2 Consensus size: 16
8158320 TTTCTTTTTC
*
8158330 TTTTTTTTATCTATTAA
1 TTTTATTTATCTATT-A
* *
8158347 TATTTTTATTATTTATCTA
1 T-TTTAT-TTATCTAT-TA
8158366 CTTTTATTTAT-TATTA
1 -TTTTATTTATCTATTA
* *
8158382 TTAATATTTATCTATTCC
1 TT-TTATTTATCTATT-A
8158400 TTTTATTTATCTAATTA
1 TTTTATTTATCT-ATTA
8158417 TTTT
1 TTTT
8158421 TTTTGTTATC
Statistics
Matches: 60, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
15 2 0.03
16 9 0.15
17 21 0.35
18 14 0.23
19 12 0.20
20 2 0.03
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (16 bp):
TTTTATTTATCTATTA
Found at i:8159329 original size:6 final size:5
Alignment explanation
Indices: 8159313--8159377 Score: 73
Period size: 5 Copynumber: 12.8 Consensus size: 5
8159303 AAATATATTT
8159313 TTTTA TTTTA TTCTTA TTCTTA TTTTA TTTT- TCTTTA TTTTTA TTTTA
1 TTTTA TTTTA TT-TTA TT-TTA TTTTA TTTTA T-TTTA -TTTTA TTTTA
8159361 TTTTA --TTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTT
8159378 CTTTAAATAA
Statistics
Matches: 54, Mismatches: 0, Indels: 12
0.82 0.00 0.18
Matches are distributed among these distances:
3 3 0.06
4 1 0.02
5 34 0.63
6 15 0.28
7 1 0.02
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:8159356 original size:21 final size:22
Alignment explanation
Indices: 8159314--8159367 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
8159304 AATATATTTT
8159314 TTTATTTTATTCTTATTCTTAT
1 TTTATTTTATTCTTATTCTTAT
*
8159336 TTTA-TTT-TTCTTTATTTTTAT
1 TTTATTTTATTC-TTATTCTTAT
8159357 TTTATTTTATT
1 TTTATTTTATT
8159368 ATTTTATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 3 0.11
21 16 0.57
22 7 0.25
23 2 0.07
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTATTTTATTCTTATTCTTAT
Found at i:8159462 original size:59 final size:56
Alignment explanation
Indices: 8159373--8159605 Score: 235
Period size: 59 Copynumber: 4.1 Consensus size: 56
8159363 TTATTATTTT
* ** *
8159373 ATTTTCTT-TAAATAAAATTCAAAAAAATATTTTTGAGGAAAAG-TGTAGAGTATCA
1 ATTTTCTTGAAAATAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTG-AAAGTATCA
*
8159428 ATTTTCCTTGAAAATAAGCTTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCA
1 ATTTT-CTTGAAAATAAG-TTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
* * * *
8159487 ATTTTTCTTCAAAATAAATTTTCAAAAATGATA-TTTTAAGGAAAAGTTGAAAGTATCA
1 A-TTTTCTTGAAAAT-AAGTTTCAAAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCA
* *
8159545 ATTTTTTTCGAAATTAAAGTTTC-AAAAAA-ATTTTTG-GGAAAAAGTTGAAAGTATCA
1 ATTTTCTT-GAAAAT-AAGTTTCAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCA
8159601 ATTTT
1 ATTTT
8159606 TCCTGCACAA
Statistics
Matches: 151, Mismatches: 16, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
55 8 0.05
56 30 0.20
57 16 0.11
58 43 0.28
59 46 0.30
60 8 0.05
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (56 bp):
ATTTTCTTGAAAATAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCA
Found at i:8161898 original size:5 final size:5
Alignment explanation
Indices: 8161888--8161915 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8161878 TTATCTACAA
8161888 TTCTT TTCTT TTCTT TTCTT TTCTT TTC
1 TTCTT TTCTT TTCTT TTCTT TTCTT TTC
8161916 AAGTTCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTCTT
Found at i:8164463 original size:21 final size:22
Alignment explanation
Indices: 8164430--8164477 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
8164420 TTTTAATTTT
*
8164430 AATTTAATTAATTTTAA-TAAAA
1 AATTTAATGAA-TTTAATTAAAA
8164452 AATTT-ATGAATTTAATTAAAA
1 AATTTAATGAATTTAATTAAAA
8164473 AATTT
1 AATTT
8164478 TATCAAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 5 0.21
21 14 0.58
22 5 0.21
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
AATTTAATGAATTTAATTAAAA
Found at i:8166547 original size:18 final size:18
Alignment explanation
Indices: 8166517--8166555 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
8166507 TAAAATATTT
8166517 TATT-AATTGTTATTTAA
1 TATTAAATTGTTATTTAA
*
8166534 TATTAAATTTTTATTTAA
1 TATTAAATTGTTATTTAA
8166552 -ATTA
1 TATTA
8166556 TTCTGTAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TATTAAATTGTTATTTAA
Found at i:8168580 original size:13 final size:13
Alignment explanation
Indices: 8168564--8168598 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
8168554 AACATCAAAT
8168564 ATGAACAAACCAC
1 ATGAACAAACCAC
8168577 ATGAACAAACCAC
1 ATGAACAAACCAC
*
8168590 GTGAA-AAAC
1 ATGAACAAAC
8168599 TCGTTAACAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 4 0.19
13 17 0.81
ACGTcount: A:0.54, C:0.26, G:0.11, T:0.09
Consensus pattern (13 bp):
ATGAACAAACCAC
Found at i:8168818 original size:50 final size:50
Alignment explanation
Indices: 8168711--8168890 Score: 149
Period size: 50 Copynumber: 3.7 Consensus size: 50
8168701 GAACCGAAAG
* * * *
8168711 CTCCTCTCACCAGAGGCTTCACAATTTTTAAAAATAAATTGAGATAAGAA
1 CTCCTCTCACCAGAGACTTCACAACTTTTAAAAATAAATTGAAATAAAAA
* * * * *
8168761 TTTCTCTCACCAGAGATTTCACAACTTTTGAAGATAAATTGAAATAAAAA
1 CTCCTCTCACCAGAGACTTCACAACTTTTAAAAATAAATTGAAATAAAAA
** * *
8168811 CTCCTCTCAGTAGATG-C-TCTACAAC-TTT--AAACAAATTGAAACAAAAA
1 CTCCTCTCACCAGA-GACTTC-ACAACTTTTAAAAATAAATTGAAATAAAAA
* * *
8168858 CTTCTC-CATCAGAGGCTTCACAA-TTTTAAAAAT
1 CTCCTCTCACCAGAGACTTCACAACTTTTAAAAAT
8168891 TTTATCTTAA
Statistics
Matches: 102, Mismatches: 21, Indels: 16
0.73 0.15 0.12
Matches are distributed among these distances:
45 1 0.01
46 13 0.13
47 23 0.23
48 3 0.03
49 5 0.05
50 56 0.55
51 1 0.01
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.29
Consensus pattern (50 bp):
CTCCTCTCACCAGAGACTTCACAACTTTTAAAAATAAATTGAAATAAAAA
Found at i:8168987 original size:26 final size:26
Alignment explanation
Indices: 8168935--8168988 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
8168925 ACAACTTTAA
* * *
8168935 AAATCTTATCCTAGAAAAGCTTATTT
1 AAATCTTATCCGAAAAAAGCTCATTT
* *
8168961 AAATCTTATTCGAAAAAAGCTCCTTT
1 AAATCTTATCCGAAAAAAGCTCATTT
8168987 AA
1 AA
8168989 TTAAAGGCAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.41, C:0.17, G:0.07, T:0.35
Consensus pattern (26 bp):
AAATCTTATCCGAAAAAAGCTCATTT
Found at i:8171826 original size:23 final size:23
Alignment explanation
Indices: 8171800--8171847 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 23
8171790 ACCTAAAACA
8171800 TTTGAATG-AGATTTTTAAAAATT
1 TTTGAATGCA-ATTTTTAAAAATT
*
8171823 TTTGAATGCCAATTTTTGAAAATT
1 TTTGAATG-CAATTTTTAAAAATT
8171847 T
1 T
8171848 GGATGTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 8 0.36
24 13 0.59
25 1 0.05
ACGTcount: A:0.35, C:0.04, G:0.12, T:0.48
Consensus pattern (23 bp):
TTTGAATGCAATTTTTAAAAATT
Found at i:8172018 original size:17 final size:17
Alignment explanation
Indices: 8171998--8172098 Score: 73
Period size: 17 Copynumber: 6.0 Consensus size: 17
8171988 AATCATTGAG
* *
8171998 TCTTACGAATTTTTAAA
1 TCTTACGAATCTATAAA
*
8172015 TCTTACGAATCTATAAT
1 TCTTACGAATCTATAAA
*
8172032 TCTTACGAATATGA-AAA
1 TCTTACGAATCT-ATAAA
** *
8172049 TCTTGTGAATCTAAAAA
1 TCTTACGAATCTATAAA
*
8172066 TCTTACAAATCTGA-AAA
1 TCTTACGAATCT-ATAAA
* *
8172083 CCTTGCGAATCT-TAAA
1 TCTTACGAATCTATAAA
8172099 ATCTAACAAT
Statistics
Matches: 66, Mismatches: 14, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
16 4 0.06
17 60 0.91
18 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.36
Consensus pattern (17 bp):
TCTTACGAATCTATAAA
Found at i:8172050 original size:34 final size:34
Alignment explanation
Indices: 8171998--8172102 Score: 111
Period size: 34 Copynumber: 3.1 Consensus size: 34
8171988 AATCATTGAG
* ** * * *
8171998 TCTTACGAATTTTTAAATCTTACGAATCTATAAT
1 TCTTACGAATATGAAAATCTTGCGAATCTAAAAA
*
8172032 TCTTACGAATATGAAAATCTTGTGAATCTAAAAA
1 TCTTACGAATATGAAAATCTTGCGAATCTAAAAA
* * * *
8172066 TCTTACAAATCTGAAAACCTTGCGAATCTTAAAA
1 TCTTACGAATATGAAAATCTTGCGAATCTAAAAA
8172100 TCT
1 TCT
8172103 AACAATTTTT
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
34 59 1.00
ACGTcount: A:0.39, C:0.16, G:0.09, T:0.36
Consensus pattern (34 bp):
TCTTACGAATATGAAAATCTTGCGAATCTAAAAA
Found at i:8172099 original size:17 final size:17
Alignment explanation
Indices: 8172012--8172102 Score: 74
Period size: 17 Copynumber: 5.4 Consensus size: 17
8172002 ACGAATTTTT
* *
8172012 AAATCTTACGAATCTAT
1 AAATCTTGCGAATCTAA
* * * *
8172029 AATTCTTACGAATATGA
1 AAATCTTGCGAATCTAA
*
8172046 AAATCTTGTGAATCTAA
1 AAATCTTGCGAATCTAA
* * *
8172063 AAATCTTACAAATCTGA
1 AAATCTTGCGAATCTAA
* *
8172080 AAACCTTGCGAATCTTA
1 AAATCTTGCGAATCTAA
8172097 AAATCT
1 AAATCT
8172103 AACAATTTTT
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 56 1.00
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (17 bp):
AAATCTTGCGAATCTAA
Found at i:8172167 original size:36 final size:34
Alignment explanation
Indices: 8172097--8172169 Score: 83
Period size: 36 Copynumber: 2.1 Consensus size: 34
8172087 GCGAATCTTA
** *
8172097 AAATCTAACAATTTTTTATTTTTGTGAATATTTG
1 AAATCTAACAATTTTCAATTCTTGTGAATATTTG
* *
8172131 AAATCTAACGAATCTTTCAATTCTTGTGGATCTTTG
1 AAATCTAAC-AAT-TTTCAATTCTTGTGAATATTTG
8172167 AAA
1 AAA
8172170 CCTTATGACC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
34 9 0.28
35 3 0.09
36 20 0.62
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (34 bp):
AAATCTAACAATTTTCAATTCTTGTGAATATTTG
Found at i:8172319 original size:22 final size:21
Alignment explanation
Indices: 8172252--8172329 Score: 61
Period size: 22 Copynumber: 3.7 Consensus size: 21
8172242 ATGTGAAACT
*
8172252 TTGAATTT-AA-TTGTAAATTC
1 TTGAATTTCAAGTTGGAAA-TC
* * * *
8172272 TTAAATTTCAAATTGTGAACTT
1 TTGAATTTCAAGTTG-GAAATC
8172294 TTGAATTTCAAGTTGGAAATCC
1 TTGAATTTCAAGTTGGAAAT-C
*
8172316 TTGATTTTCAAGTT
1 TTGAATTTCAAGTT
8172330 ATGAATCTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
20 7 0.16
21 6 0.13
22 30 0.67
23 2 0.04
ACGTcount: A:0.32, C:0.09, G:0.13, T:0.46
Consensus pattern (21 bp):
TTGAATTTCAAGTTGGAAATC
Found at i:8173653 original size:9 final size:8
Alignment explanation
Indices: 8173640--8173705 Score: 53
Period size: 8 Copynumber: 8.1 Consensus size: 8
8173630 CAGATTTTGG
8173640 TATTTTTT
1 TATTTTTT
8173648 TCATTTTTT
1 T-ATTTTTT
*
8173657 TA-TTTCT
1 TATTTTTT
* *
8173664 AATTATTT
1 TATTTTTT
*
8173672 TATTTATT
1 TATTTTTT
*
8173680 TATTTATT
1 TATTTTTT
8173688 TAGTTTTTT
1 TA-TTTTTT
*
8173697 TCTTTTTT
1 TATTTTTT
8173705 T
1 T
8173706 TGTGATTTTA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
7 5 0.11
8 27 0.59
9 14 0.30
ACGTcount: A:0.17, C:0.05, G:0.02, T:0.77
Consensus pattern (8 bp):
TATTTTTT
Found at i:8173914 original size:3 final size:3
Alignment explanation
Indices: 8173901--8173964 Score: 119
Period size: 3 Copynumber: 21.3 Consensus size: 3
8173891 ATGAATTTTT
*
8173901 ATA AGA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
8173949 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
8173965 AACCTTATCA
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:8174200 original size:39 final size:40
Alignment explanation
Indices: 8174157--8174239 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 40
8174147 AATTTGCATG
* * *
8174157 AAATCCTACTAACATATTGAAAGAT-ATTTTTTTAATA-GA
1 AAATCCTACTAACATATT-AAAAATAATATTTTTAAAATGA
* *
8174196 AAATCTTACTAATATATTAAAAATAATATTTTTAAAATGA
1 AAATCCTACTAACATATTAAAAATAATATTTTTAAAATGA
8174236 AAAT
1 AAAT
8174240 TGATTTTGGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
38 5 0.14
39 26 0.70
40 6 0.16
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (40 bp):
AAATCCTACTAACATATTAAAAATAATATTTTTAAAATGA
Found at i:8175361 original size:14 final size:14
Alignment explanation
Indices: 8175339--8175380 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
8175329 AATACTTAAT
*
8175339 TATAGATATACAAA
1 TATAAATATACAAA
8175353 TATAAATATACAAA
1 TATAAATATACAAA
8175367 T-TACAATATTACAA
1 TATA-AATA-TACAA
8175381 CCAGCTGTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 2 0.08
14 18 0.72
15 5 0.20
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (14 bp):
TATAAATATACAAA
Found at i:8178418 original size:21 final size:22
Alignment explanation
Indices: 8178387--8178427 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
8178377 TGTCTCAAGA
8178387 TAGTATAGTCC-ATCATTCTTCT
1 TAGTATAGTCCAAT-ATTCTTCT
8178409 TAGTA-AGTCCAATATTCTT
1 TAGTATAGTCCAATATTCTT
8178428 TCCCAAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.27, C:0.20, G:0.10, T:0.44
Consensus pattern (22 bp):
TAGTATAGTCCAATATTCTTCT
Found at i:8179722 original size:16 final size:16
Alignment explanation
Indices: 8179676--8179723 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 16
8179666 CTACAATTAA
*
8179676 TTAAGTTTATGAATAT
1 TTAAGTTTATGAATAC
*
8179692 TATAAATTTATGAATAC
1 T-TAAGTTTATGAATAC
*
8179709 TTAAGTTCATGAATA
1 TTAAGTTTATGAATA
8179724 GTAAAAATAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (16 bp):
TTAAGTTTATGAATAC
Found at i:8185544 original size:21 final size:22
Alignment explanation
Indices: 8185507--8185560 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
8185497 TCAAAGAATT
*
8185507 TCTAAAAAA-ATTTTT-AA-AA
1 TCTAAAAAATTTTTTTAAACAA
8185526 TCTAAAAAATTTTTCTTAAACAA
1 TCTAAAAAATTTTT-TTAAACAA
8185549 TCT-AAAAATTTT
1 TCTAAAAAATTTT
8185561 CCAAATTTCT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 9 0.30
20 3 0.10
21 2 0.07
22 11 0.37
23 5 0.17
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (22 bp):
TCTAAAAAATTTTTTTAAACAA
Found at i:8185573 original size:19 final size:18
Alignment explanation
Indices: 8185549--8185642 Score: 64
Period size: 19 Copynumber: 4.8 Consensus size: 18
8185539 TCTTAAACAA
*
8185549 TCTAAAAATTTTCCAAATT
1 TCTAAAAATTTT-AAAATT
8185568 TCTAAAATATTTTAAAATT
1 TCTAAAA-ATTTTAAAATT
* *
8185587 TATAAAAAATTTTAATAAAT
1 TCT-AAAAATTTTAA-AATT
8185607 TC-AAAACATTTCTTAAAATT
1 TCTAAAA-A-TT-TTAAAATT
* *
8185627 TTTGAAAAATTCTAAA
1 TCT-AAAAATTTTAAA
8185643 CTACAAAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
18 4 0.07
19 26 0.43
20 21 0.35
21 5 0.08
22 4 0.07
ACGTcount: A:0.49, C:0.09, G:0.01, T:0.41
Consensus pattern (18 bp):
TCTAAAAATTTTAAAATT
Found at i:8185724 original size:18 final size:18
Alignment explanation
Indices: 8185701--8185770 Score: 86
Period size: 18 Copynumber: 3.7 Consensus size: 18
8185691 GAAATTTTTG
8185701 AAAATTTTAAAAAATCTA
1 AAAATTTTAAAAAATCTA
*
8185719 AAAATTTTGAAAAATCTA
1 AAAATTTTAAAAAATCTA
*
8185737 AAAATTTTTGAAAAATTCTA
1 AAAA-TTTT-AAAAAATCTA
8185757 AAACTATTTTAAAA
1 AAA--ATTTTAAAA
8185771 TTTTTGCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
18 21 0.47
19 4 0.09
20 15 0.33
21 4 0.09
22 1 0.02
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.36
Consensus pattern (18 bp):
AAAATTTTAAAAAATCTA
Found at i:8185969 original size:21 final size:21
Alignment explanation
Indices: 8185940--8185988 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
8185930 TCAAAAAAAT
* *
8185940 GAAAATTTTCAGAACTTTTTA
1 GAAATTTTTCACAACTTTTTA
* *
8185961 GAAATTTTTTACAATTTTTTA
1 GAAATTTTTCACAACTTTTTA
*
8185982 AAAATTT
1 GAAATTT
8185989 ATAGATTTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.49
Consensus pattern (21 bp):
GAAATTTTTCACAACTTTTTA
Found at i:8185998 original size:20 final size:19
Alignment explanation
Indices: 8185975--8186021 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
8185965 TTTTTTACAA
*
8185975 TTTTTTAAAAATTTATAGAT
1 TTTTTTAAAAAATT-TAGAT
*
8185995 TTTTTCAAAAAAATTTAGAT
1 TTTTT-TAAAAAATTTAGAT
8186015 TTTTTTA
1 TTTTTTA
8186022 TTTTAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.04
20 15 0.65
21 7 0.30
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTTTTAAAAAATTTAGAT
Found at i:8186070 original size:19 final size:21
Alignment explanation
Indices: 8186031--8186073 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8186021 ATTTTAAATA
*
8186031 TTTTAAGTTTTGTGAATTTTT
1 TTTTAAGTTTTGAGAATTTTT
8186052 TTTTAAGTTTTGAG-ATTTTT
1 TTTTAAGTTTTGAGAATTTTT
8186072 TT
1 TT
8186074 AAAATTTTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.67
Consensus pattern (21 bp):
TTTTAAGTTTTGAGAATTTTT
Found at i:8186121 original size:12 final size:12
Alignment explanation
Indices: 8186104--8186128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8186094 ATTTTATTTT
8186104 AGAATTTTTTAA
1 AGAATTTTTTAA
8186116 AGAATTTTTTAA
1 AGAATTTTTTAA
8186128 A
1 A
8186129 CTTTTTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (12 bp):
AGAATTTTTTAA
Found at i:8186144 original size:21 final size:22
Alignment explanation
Indices: 8186093--8186144 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 22
8186083 AAGTTTCTTT
* *
8186093 AATTTTATTTTAGAATTTTTTA
1 AATTTTTTTTTAGAACTTTTTA
***
8186115 AAGAATTTTTTA-AACTTTTTA
1 AATTTTTTTTTAGAACTTTTTA
8186136 AATTTTTTT
1 AATTTTTTT
8186145 GAATTAAATT
Statistics
Matches: 22, Mismatches: 8, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.62
Consensus pattern (22 bp):
AATTTTTTTTTAGAACTTTTTA
Found at i:8191681 original size:12 final size:11
Alignment explanation
Indices: 8191645--8191687 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
8191635 TCGGATTTAA
* *
8191645 TTTTTTTCAAT
1 TTTTTTTTAGT
8191656 TTTTTTTTAGT
1 TTTTTTTTAGT
8191667 TTTTTTTTAGCT
1 TTTTTTTTAG-T
8191679 TTTTGTTTT
1 TTTT-TTTT
8191688 TTAACTTCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
11 19 0.68
12 5 0.18
13 4 0.14
ACGTcount: A:0.09, C:0.05, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTTTAGT
Found at i:8192533 original size:20 final size:20
Alignment explanation
Indices: 8192482--8192535 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
8192472 CTTATTTCAG
*
8192482 TATATATATA-ATTATATTT
1 TATATTTATATATTATATTT
* * *
8192501 T-TAATTATTTATTATGTTT
1 TATATTTATATATTATATTT
8192520 TATATTTATATATTAT
1 TATATTTATATATTAT
8192536 TATATTAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 5 0.19
19 10 0.37
20 12 0.44
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (20 bp):
TATATTTATATATTATATTT
Found at i:8192582 original size:29 final size:31
Alignment explanation
Indices: 8192522--8192592 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 31
8192512 TTATGTTTTA
**
8192522 TATTTATATATTATTATATTAATAAAGTTAT
1 TATTTATATATTATTATATTAATAAAAATAT
8192553 TATTTA-ATATT-TTA-ATTGAATAAAAATAT
1 TATTTATATATTATTATATT-AATAAAAATAT
8192582 TATATT-TATAT
1 TAT-TTATATAT
8192593 GGAATTAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
28 3 0.09
29 15 0.43
30 11 0.31
31 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (31 bp):
TATTTATATATTATTATATTAATAAAAATAT
Found at i:8192977 original size:24 final size:24
Alignment explanation
Indices: 8192950--8193002 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
8192940 TTTCCTTTTG
* * *
8192950 TTTTTCTTTTTTTATTTTTTTAGA
1 TTTTTCCTTTTTTATTTTTATACA
8192974 TTTTTCCTTTTTTATTTTTATACA
1 TTTTTCCTTTTTTATTTTTATACA
8192998 TTTTT
1 TTTTT
8193003 TGTTAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.13, C:0.08, G:0.02, T:0.77
Consensus pattern (24 bp):
TTTTTCCTTTTTTATTTTTATACA
Found at i:8194576 original size:17 final size:19
Alignment explanation
Indices: 8194556--8194591 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8194546 TATAAAAAGA
8194556 TTATTAT-AT-TTATATTT
1 TTATTATGATATTATATTT
8194573 TTATTATGATATTATATTT
1 TTATTATGATATTATATTT
8194592 GATTATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.41
18 2 0.12
19 8 0.47
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (19 bp):
TTATTATGATATTATATTT
Found at i:8195070 original size:15 final size:15
Alignment explanation
Indices: 8195045--8195086 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8195035 TTTAAAAAAC
8195045 TTTCATTTCATTTCAT
1 TTTC-TTTCATTTCAT
*
8195061 TTTCTTTCATTTCCT
1 TTTCTTTCATTTCAT
*
8195076 TTCCTTT-ATTT
1 TTTCTTTCATTT
8195087 ATATGTATCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 4 0.17
15 16 0.67
16 4 0.17
ACGTcount: A:0.12, C:0.21, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTCTTTCATTTCAT
Found at i:8195724 original size:7 final size:7
Alignment explanation
Indices: 8195712--8195741 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8195702 TACATTCTAG
8195712 TAGTAAT
1 TAGTAAT
8195719 TAGTAAT
1 TAGTAAT
8195726 TAGTAAT
1 TAGTAAT
*
8195733 TAATAAT
1 TAGTAAT
8195740 TA
1 TA
8195742 ATGTTTTGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (7 bp):
TAGTAAT
Found at i:8196377 original size:45 final size:45
Alignment explanation
Indices: 8196328--8196418 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
8196318 TATCGATAAA
*
8196328 AAAAATATTTATTAAAAAATGATAACATTTT-AATTTATAAAAATT
1 AAAAATATTTATTAAAAAATAATAA-ATTTTAAATTTATAAAAATT
*
8196373 AAAAATATTTATTAAAAATTAATAAATTTTAAATTTATAAAAATT
1 AAAAATATTTATTAAAAAATAATAAATTTTAAATTTATAAAAATT
8196418 A
1 A
8196419 TATTTACTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 5 0.12
45 38 0.88
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.41
Consensus pattern (45 bp):
AAAAATATTTATTAAAAAATAATAAATTTTAAATTTATAAAAATT
Found at i:8196384 original size:19 final size:21
Alignment explanation
Indices: 8196360--8196403 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
8196350 TAACATTTTA
8196360 ATTTA-TAAAAATTAA-AAAT
1 ATTTATTAAAAATTAATAAAT
8196379 ATTTATTAAAAATTAATAAAT
1 ATTTATTAAAAATTAATAAAT
8196400 -TTTA
1 ATTTA
8196404 AATTTATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 5 0.22
20 14 0.61
21 4 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
ATTTATTAAAAATTAATAAAT
Found at i:8196730 original size:17 final size:18
Alignment explanation
Indices: 8196710--8196753 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
8196700 AATTTTATTT
8196710 ATAAAAAATTTG-AAAAA
1 ATAAAAAATTTGTAAAAA
* *
8196727 ATAAAAAATATGTAAAGA
1 ATAAAAAATTTGTAAAAA
8196745 A-AAAAAATT
1 ATAAAAAATT
8196754 AGATACATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 18 0.78
18 5 0.22
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.23
Consensus pattern (18 bp):
ATAAAAAATTTGTAAAAA
Found at i:8216415 original size:24 final size:24
Alignment explanation
Indices: 8216388--8216444 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
8216378 AAGATTGAAG
**
8216388 CCATGAGTTGTGATGGTCGGTGGA
1 CCATGAGTTACGATGGTCGGTGGA
*
8216412 CCATGAGTTACGTTGGTCGGTGGA
1 CCATGAGTTACGATGGTCGGTGGA
8216436 CCATGAGTT
1 CCATGAGTT
8216445 CTCATGGTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.18, C:0.16, G:0.37, T:0.30
Consensus pattern (24 bp):
CCATGAGTTACGATGGTCGGTGGA
Found at i:8216452 original size:24 final size:23
Alignment explanation
Indices: 8216388--8216452 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 23
8216378 AAGATTGAAG
*
8216388 CCATGAGTTGTGATGGTCGGTGGA
1 CCATGAGTTCT-ATGGTCGGTGGA
8216412 CCATGAGTTACGT-TGGTCGGTGGA
1 CCATGAGTT-C-TATGGTCGGTGGA
8216436 CCATGAGTTCTCATGGT
1 CCATGAGTTCT-ATGGT
8216453 TAGAGGATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
22 1 0.03
23 1 0.03
24 33 0.92
26 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.35, T:0.31
Consensus pattern (23 bp):
CCATGAGTTCTATGGTCGGTGGA
Found at i:8222166 original size:102 final size:102
Alignment explanation
Indices: 8221772--8222252 Score: 741
Period size: 102 Copynumber: 4.7 Consensus size: 102
8221762 AAATCTAACT
* **
8221772 GTGGACGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTTAGGCGCATCCAGTTC
1 GTGGGCGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
* *
8221837 TGGGCGTAGTCCCTTCCGACGGATCGACCTTGGGTAG
66 TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
* * * **
8221874 GTGGGCGACTGGACGAGTTTCGAAGAACGGGTCTTGTTAGAACCAGATTTGGATGCATCCAGTT-
1 GTGGGCGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
* *
8221938 TGGGCGTAGTCCCTTCCGACGGATCGATCTCGGGTAG
66 TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
* * *
8221975 GTGGGTGACTGGGCGAGTTTCGAAGAACAGGTCTTGTTGG-ACCAGATTCGGGCACATCCAGTTC
1 GTGGGCGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
8222039 TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
66 TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
*
8222076 GTGGGCGACTGGGCGAGTTTTGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
1 GTGGGCGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
8222141 TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
66 TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
* * * * * *
8222178 GTAGACAACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGTATCTAGTTT
1 GTGGGCGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
*
8222243 TGGGCATAGT
66 TGGGCGTAGT
8222253 AAGTACCCCG
Statistics
Matches: 347, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
100 19 0.05
101 143 0.41
102 185 0.53
ACGTcount: A:0.19, C:0.22, G:0.35, T:0.25
Consensus pattern (102 bp):
GTGGGCGACTGGGCGAGTTTCGAAGAACGGGTCTTGTTGGAACCAGATTCGGGCGCATCCAGTTC
TGGGCGTAGTCCCTTCCGACGGATCGACCTCGGGCAG
Found at i:8226431 original size:16 final size:13
Alignment explanation
Indices: 8226406--8226453 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 13
8226396 AATATTATCT
8226406 TTTTTAATTAATTCA
1 TTTTTAATT-ATT-A
8226421 TTTTTATATTATTA
1 TTTTTA-ATTATTA
8226435 TTTTTAAATATATTA
1 TTTTT-AAT-TATTA
8226450 TTTT
1 TTTT
8226454 ATGAGATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
14 8 0.27
15 19 0.63
16 3 0.10
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (13 bp):
TTTTTAATTATTA
Found at i:8226452 original size:29 final size:29
Alignment explanation
Indices: 8226397--8226453 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
8226387 TTGGTAAATA
*
8226397 ATATTATCTTTTTTAATTAATTCATTTTT
1 ATATTATCTTTTTTAAATAATTCATTTTT
8226426 ATATTAT-TATTTTTAAATATATT-ATTTT
1 ATATTATCT-TTTTTAAATA-ATTCATTTT
8226454 ATGAGATTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 21 0.84
30 3 0.12
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.65
Consensus pattern (29 bp):
ATATTATCTTTTTTAAATAATTCATTTTT
Found at i:8226816 original size:61 final size:61
Alignment explanation
Indices: 8226708--8226823 Score: 144
Period size: 61 Copynumber: 1.9 Consensus size: 61
8226698 TGAATTTTAG
* *
8226708 TTTACTAAGTTTTATATATTTCATAATTCCATCATCTATGGTAAGAATTTGTGAGTTTGAA
1 TTTACTAAGTTTTATATATTTCATAATTCCATCATCTATGATAAGAATTTATGAGTTTGAA
* * * * * *
8226769 TTTACTATA-TTTTATGTATTTTATAATTCTATTATTTATGATGAGAATTTATGAG
1 TTTACTA-AGTTTTATATATTTCATAATTCCATCATCTATGATAAGAATTTATGAG
8226824 ATTTTTACTA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
61 45 0.98
62 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (61 bp):
TTTACTAAGTTTTATATATTTCATAATTCCATCATCTATGATAAGAATTTATGAGTTTGAA
Found at i:8229410 original size:13 final size:14
Alignment explanation
Indices: 8229388--8229416 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
8229378 GATGCGAGCA
8229388 TTTTATTTGTAATT
1 TTTTATTTGTAATT
8229402 TTTTA-TTGTAATT
1 TTTTATTTGTAATT
8229415 TT
1 TT
8229417 GTAATTGTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.72
Consensus pattern (14 bp):
TTTTATTTGTAATT
Found at i:8231187 original size:17 final size:16
Alignment explanation
Indices: 8231158--8231211 Score: 65
Period size: 17 Copynumber: 3.4 Consensus size: 16
8231148 AAAAAATAGG
8231158 TTTTCTATCTTTCCAT
1 TTTTCTATCTTTCCAT
*
8231174 TTTTCTACTCTTTCAAT
1 TTTTCTA-TCTTTCCAT
* *
8231191 ATTTC-ATCTTTACAT
1 TTTTCTATCTTTCCAT
8231206 TTTTCT
1 TTTTCT
8231212 TTCCGTCCTA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
15 11 0.35
16 8 0.26
17 12 0.39
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTTCTATCTTTCCAT
Found at i:8238694 original size:3 final size:3
Alignment explanation
Indices: 8238686--8238737 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
8238676 GTTATTGACC
8238686 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8238733 TTA TT
1 TTA TT
8238738 GTCCTCAAAG
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8248898 original size:30 final size:30
Alignment explanation
Indices: 8248860--8248942 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 30
8248850 AACACTGTAC
8248860 CAAGGCTATACCTGATTTGTTGTGAAATAG
1 CAAGGCTATACCTGATTTGTTGTGAAATAG
* * *
8248890 CTAGGCTATACATGA--T-TTATGAAATAG
1 CAAGGCTATACCTGATTTGTTGTGAAATAG
8248917 CAAGGCTATATACCTGATTTGTTGTG
1 CAAGGC--TATACCTGATTTGTTGTG
8248943 GCAGCAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
27 15 0.36
28 1 0.02
29 8 0.19
30 13 0.31
31 1 0.02
32 4 0.10
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (30 bp):
CAAGGCTATACCTGATTTGTTGTGAAATAG
Found at i:8253296 original size:14 final size:15
Alignment explanation
Indices: 8253265--8253302 Score: 53
Period size: 13 Copynumber: 2.6 Consensus size: 15
8253255 TAACATAAAA
8253265 AAAATTTATAATTATT
1 AAAATTTA-AATTATT
8253281 AAAATTTAAA-TATT
1 AAAATTTAAATTATT
8253295 -AAATTTAA
1 AAAATTTAA
8253303 GAAATATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.36
14 4 0.18
15 2 0.09
16 8 0.36
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
AAAATTTAAATTATT
Found at i:8253516 original size:19 final size:19
Alignment explanation
Indices: 8253469--8253517 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
8253459 TATAAATATA
*
8253469 AAAAAATTAAAATTTTAAT
1 AAAAAATTACAATTTTAAT
8253488 AAAAAATTACAATTTTAAT
1 AAAAAATTACAATTTTAAT
8253507 AAAAAATTACA
1 AAAAAATTACA
8253518 TCTATATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAATTACAATTTTAAT
Found at i:8253565 original size:47 final size:46
Alignment explanation
Indices: 8253508--8253599 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 46
8253498 AATTTTAATA
8253508 AAAAATTACATCTATATATATAATTATTGAAT-AAT-TATAATTAAATT
1 AAAAATTACATCTATATATATAA-TA-T-AATCAATGTATAATTAAATT
*
8253555 AAAAATTACATCTATATATGTAATATAATCAATGTATAATTAAAT
1 AAAAATTACATCTATATATATAATATAATCAATGTATAATTAAAT
8253600 AAATACGACC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
44 3 0.07
45 4 0.10
46 13 0.31
47 22 0.52
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.40
Consensus pattern (46 bp):
AAAAATTACATCTATATATATAATATAATCAATGTATAATTAAATT
Found at i:8255171 original size:40 final size:41
Alignment explanation
Indices: 8255087--8255171 Score: 100
Period size: 45 Copynumber: 2.0 Consensus size: 41
8255077 ATTTATGTTT
* * *
8255087 GACAGAATCCAATCCCAGGATTCAAGCCTGGATTGGTTTTGTTCA
1 GACAAAATCCAATCCCAGGATTCAAACCTGGA----TTTAGTTCA
8255132 GACAAAATCCAATCCCAGGATTCAAACCTGGA-TTAGTTCA
1 GACAAAATCCAATCCCAGGATTCAAACCTGGATTTAGTTCA
8255172 AACCTAGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
40 7 0.19
45 30 0.81
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.26
Consensus pattern (41 bp):
GACAAAATCCAATCCCAGGATTCAAACCTGGATTTAGTTCA
Found at i:8255173 original size:16 final size:16
Alignment explanation
Indices: 8255152--8255185 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
8255142 AATCCCAGGA
*
8255152 TTCAAACCTGGATTAG
1 TTCAAACCTAGATTAG
8255168 TTCAAACCTAGATTAG
1 TTCAAACCTAGATTAG
8255184 TT
1 TT
8255186 ATGTCCAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (16 bp):
TTCAAACCTAGATTAG
Found at i:8256423 original size:1 final size:1
Alignment explanation
Indices: 8256417--8256442 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
8256407 ATCGCCAACG
8256417 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
8256443 CACTGTCCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:8256662 original size:3 final size:3
Alignment explanation
Indices: 8256654--8256683 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8256644 TTTATTGAAG
*
8256654 ATT ATT ATT AAT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8256684 TTTTATCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:8258174 original size:48 final size:47
Alignment explanation
Indices: 8258122--8258246 Score: 121
Period size: 47 Copynumber: 2.7 Consensus size: 47
8258112 TTTATGAAAT
*
8258122 TATAAATATAAAAAAATT-TCAATTTTAATAAAAAATTACATCTATATA
1 TATAAATATAAAAAAATTAT-AA-TTAAATAAAAAATTACATCTATATA
* ** * *
8258170 TATAATTATTGAATAATTATAATTAAATTAAAAATTACATCTATATA
1 TATAAATATAAAAAAATTATAATTAAATAAAAAATTACATCTATATA
* **
8258217 TGT-AATAT-AATCAATGTATAATTAAATAAA
1 TATAAATATAAAAAAAT-TATAATTAAATAAA
8258247 TACGACCTAA
Statistics
Matches: 63, Mismatches: 12, Indels: 6
0.78 0.15 0.07
Matches are distributed among these distances:
45 4 0.06
46 17 0.27
47 25 0.40
48 16 0.25
49 1 0.02
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (47 bp):
TATAAATATAAAAAAATTATAATTAAATAAAAAATTACATCTATATA
Found at i:8258209 original size:47 final size:46
Alignment explanation
Indices: 8258152--8258243 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 46
8258142 AATTTTAATA
8258152 AAAAATTACATCTATATATATAATTATTGAAT-AAT-TATAATTAAATT
1 AAAAATTACATCTATATATATAA-TA-T-AATCAATGTATAATTAAATT
*
8258199 AAAAATTACATCTATATATGTAATATAATCAATGTATAATTAAAT
1 AAAAATTACATCTATATATATAATATAATCAATGTATAATTAAAT
8258244 AAATACGACC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
44 3 0.07
45 4 0.10
46 13 0.31
47 22 0.52
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.40
Consensus pattern (46 bp):
AAAAATTACATCTATATATATAATATAATCAATGTATAATTAAATT
Done.