Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 37 of 133
Found at i:8260441 original size:5 final size:5
Alignment explanation
Indices: 8260427--8260528 Score: 70
Period size: 5 Copynumber: 19.4 Consensus size: 5
8260417 CGATCACAGG
8260427 TTTT- TTTTA TTTTA TTTTA -TTTA TTTT- TTTATCA TTTTATA TTTTAA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT-T-A -TTT-TA TTTT-A
*
8260474 GTTTT- TTATTA TTTTA TTTTTA TTTT- TTAGTA TTTTA TTTTTA TTTTA
1 -TTTTA TT-TTA TTTTA -TTTTA TTTTA TT-TTA TTTTA -TTTTA TTTTA
8260522 TTTTA TT
1 TTTTA TT
8260529 AAATTTTTTA
Statistics
Matches: 82, Mismatches: 2, Indels: 27
0.74 0.02 0.24
Matches are distributed among these distances:
4 15 0.18
5 39 0.48
6 18 0.22
7 5 0.06
8 5 0.06
ACGTcount: A:0.20, C:0.01, G:0.02, T:0.77
Consensus pattern (5 bp):
TTTTA
Found at i:8260455 original size:21 final size:21
Alignment explanation
Indices: 8260429--8260540 Score: 69
Period size: 21 Copynumber: 5.4 Consensus size: 21
8260419 ATCACAGGTT
8260429 TTTTTTATTTTATTTTATTTA
1 TTTTTTATTTTATTTTATTTA
* *
8260450 TTTTTT-TATCATTTTA--TA
1 TTTTTTATTTTATTTTATTTA
*
8260468 -TTTTAAGTTTT-TTATTATTTTA
1 TTTTTTA-TTTTATT-TTA-TTTA
*
8260490 -TTTTTATTTT-TTAGTATTT-
1 TTTTTTATTTTATT-TTATTTA
*
8260509 TATTTTTATTTTATTTTATTAAA
1 T-TTTTTATTTTATTTTATT-TA
8260532 TTTTTTATT
1 TTTTTTATT
8260541 GAACAATTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 21
0.70 0.09 0.21
Matches are distributed among these distances:
17 4 0.06
18 4 0.06
19 5 0.07
20 11 0.15
21 29 0.41
22 17 0.24
23 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTTTTATTTTATTTTATTTA
Found at i:8260465 original size:16 final size:15
Alignment explanation
Indices: 8260431--8260528 Score: 78
Period size: 16 Copynumber: 6.5 Consensus size: 15
8260421 CACAGGTTTT
8260431 TTTTATTTTATTT-TA
1 TTTTATTTT-TTTATA
8260446 -TTTATTTTTTTATCA
1 TTTTATTTTTTTAT-A
* * *
8260461 TTTTATATTTTAAGTT
1 TTTTATTTTTTTA-TA
*
8260477 TTTTATTATTTTAT-
1 TTTTATTTTTTTATA
8260491 TTTTA-TTTTTTAGTA
1 TTTTATTTTTTTA-TA
*
8260506 TTTTATTTTTATTTTA
1 TTTTATTTTT-TTATA
8260522 TTTTATT
1 TTTTATT
8260529 AAATTTTTTA
Statistics
Matches: 67, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
13 9 0.13
14 15 0.22
15 7 0.10
16 33 0.49
17 3 0.04
ACGTcount: A:0.20, C:0.01, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTATTTTTTTATA
Found at i:8260529 original size:45 final size:44
Alignment explanation
Indices: 8260429--8260516 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 44
8260419 ATCACAGGTT
8260429 TTTTTTATTTTATTTTATTTATTTTTTTATCATTTTATATTTTAAG
1 TTTTTTA--TTATTTTATTTATTTTTTTATCATTTTATATTTTAAG
*
8260475 TTTTTTATTATTTTATTTTTATTTTTTAGT-ATTTTAT-TTTTA
1 TTTTTTATTATTTTATTTAT-TTTTTTA-TCATTTTATATTTTA
8260517 TTTTATTTTA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
44 17 0.44
45 14 0.36
46 8 0.21
ACGTcount: A:0.20, C:0.01, G:0.02, T:0.76
Consensus pattern (44 bp):
TTTTTTATTATTTTATTTATTTTTTTATCATTTTATATTTTAAG
Found at i:8266831 original size:8 final size:8
Alignment explanation
Indices: 8266818--8266876 Score: 50
Period size: 8 Copynumber: 7.2 Consensus size: 8
8266808 TAAAATTTAT
8266818 TTTTAATC
1 TTTTAATC
*
8266826 TTTTAAAC
1 TTTTAATC
*
8266834 TTTTACTC
1 TTTTAATC
*
8266842 TTATTTA-C
1 TT-TTAATC
8266850 TTTT-ATC
1 TTTTAATC
8266857 TTTTAATC
1 TTTTAATC
8266865 ATTTTTAATC
1 --TTTTAATC
8266875 TT
1 TT
8266877 AAAGTTAACA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
6 1 0.02
7 7 0.17
8 23 0.56
9 2 0.05
10 8 0.20
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.63
Consensus pattern (8 bp):
TTTTAATC
Found at i:8267998 original size:30 final size:31
Alignment explanation
Indices: 8267964--8268026 Score: 110
Period size: 31 Copynumber: 2.1 Consensus size: 31
8267954 ATTTATGATT
8267964 AATACTATTTATATT-TAAAAAATTAAAGTA
1 AATACTATTTATATTATAAAAAATTAAAGTA
*
8267994 AATACTATTTGTATTATAAAAAATTAAAGTA
1 AATACTATTTATATTATAAAAAATTAAAGTA
8268025 AA
1 AA
8268027 AATTTATGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 14 0.45
31 17 0.55
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (31 bp):
AATACTATTTATATTATAAAAAATTAAAGTA
Found at i:8270230 original size:19 final size:19
Alignment explanation
Indices: 8270206--8270242 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8270196 TTGTAGAATA
8270206 ATTATGGTAATAAAATATT
1 ATTATGGTAATAAAATATT
* *
8270225 ATTATGGTCATACAATAT
1 ATTATGGTAATAAAATAT
8270243 GGTATTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (19 bp):
ATTATGGTAATAAAATATT
Found at i:8275157 original size:417 final size:417
Alignment explanation
Indices: 8274441--8275271 Score: 981
Period size: 417 Copynumber: 2.0 Consensus size: 417
8274431 CAAAAGTTAA
** * *
8274441 AACATAAATGTTAAAAATCAAGGGTTTTAATAAATTTTAATAAATAATGATTTTAAAAAATATGA
1 AACATAAATGTTAAAAATCAAAAGTTTCAATAAATTTTAACAAATAATGATTTTAAAAAATATGA
* ** ** *
8274506 ATAGGAGAAAATCGGAAGTCATAAATCCATGTAAATGTTAGGCAATCAAAAGTTATTGAATTTTA
66 ATAAGAGAAAATCAAAAAACATAAATCCATATAAATGTTAGGCAATCAAAAGTTATTGAATTTTA
* * *
8274571 TGTAATAAATTTAAAAACATATATGCTTAAAATTTATGTAAAAAAGACTTGACATTTATTATAAA
131 TGTAATAAAATT--AAACAGATATGCTTAAAATTTATGTAAAAAAAACTTGACATTTATTATAAA
* * *
8274636 ATATTTGAGAAATGATAATTAAAATGTAAACCGTAAAAAAAACACACCAATTGACTAAAAACCAA
194 ATATTTGAGAAATAATAATAAAAATGCAAACCGTAAAAAAAACACACCAATTGACTAAAAACCAA
* *
8274701 ACTTGAAATACCAAAAAAAAAATCAGAGATTATGATTATAAAATTAAAAAATTATGAAAATAAAA
259 ACTTGAAATACCAAAAAAAAAATCAGAAATTATGATTATAAAATTAAAAAA--ATAAAAATAAAA
* * * * *
8274766 ATACAAC-AAAAAAAATCTCATGATT--AGAAAAATATAATAGAGGCATAAAATATACTTATATA
322 ACACAACAAAAAAAAAT-TCATGATTGAAAAAAAAT-TAATAGAGACATAAAATACACTTATAGA
*
8274828 ACCCTC-CATCCAAAAAAAAAAAGGAAAATTCAT
385 ACCCTCTCAT-AAAAAAAAAAAAGGAAAATTCAT
* *
8274861 AACATAAATGTTTAAAAATCAAAAGTTTCAATAAATTTTAACAAAT-ATCGGTTTTAAAGAATAT
1 AACATAAATG-TTAAAAATCAAAAGTTTCAATAAATTTTAACAAATAAT-GATTTTAAAAAATAT
* * *
8274925 GAATAATAGAAAATCAAAAAACATGAATCCATATAAATTTTAAGG-AA-CGAAAAGTCTATT-AG
64 GAATAAGAGAAAATCAAAAAACATAAATCCATATAAATGTT-AGGCAATC-AAAAGT-TATTGA-
* * * * *
8274987 ATTTTTTGTAATAAAATT-AAGAGATA-GTTTAGAATTTATGTAAAAAAAATTTGACATTTTATT
125 ATTTTATGTAATAAAATTAAACAGATATGCTTAAAATTTATGTAAAAAAAACTTGACA-TTTATT
* * **
8275050 GTAAAATATTT--GAAATAAATAATAAAAATGCAAACAC-T-AAAAAAATACATTAATTGACTAA
189 ATAAAATATTTGAGAAAT-AATAATAAAAATGCAAAC-CGTAAAAAAAACACACCAATTGACTAA
* * * * *
8275111 AAGA-CAAATTTGAAATATCGAATAAAAAATCATAAATTATGATTATAAAATTAAAAAAATAAAA
252 AA-ACCAAACTTGAAATACCAAAAAAAAAATCAGAAATTATGATTATAAAATTAAAAAAATAAAA
** *
8275175 ATGCAAACACAACAAAAAAAAATTCATGATTGAAAAAAAATTAATAGAGACATGAAATACACTTA
316 ATAAAAACACAACAAAAAAAAATTCATGATTGAAAAAAAATTAATAGAGACATAAAATACACTTA
*
8275240 TAGAACCCTCTCATAAAAAAAAAAAATGAAAA
381 TAGAACCCTCTCATAAAAAAAAAAAAGGAAAA
8275272 ACCATAAGTT
Statistics
Matches: 350, Mismatches: 47, Indels: 32
0.82 0.11 0.07
Matches are distributed among these distances:
415 23 0.07
416 55 0.16
417 85 0.24
418 43 0.12
419 23 0.07
420 13 0.04
421 85 0.24
422 23 0.07
ACGTcount: A:0.54, C:0.09, G:0.09, T:0.28
Consensus pattern (417 bp):
AACATAAATGTTAAAAATCAAAAGTTTCAATAAATTTTAACAAATAATGATTTTAAAAAATATGA
ATAAGAGAAAATCAAAAAACATAAATCCATATAAATGTTAGGCAATCAAAAGTTATTGAATTTTA
TGTAATAAAATTAAACAGATATGCTTAAAATTTATGTAAAAAAAACTTGACATTTATTATAAAAT
ATTTGAGAAATAATAATAAAAATGCAAACCGTAAAAAAAACACACCAATTGACTAAAAACCAAAC
TTGAAATACCAAAAAAAAAATCAGAAATTATGATTATAAAATTAAAAAAATAAAAATAAAAACAC
AACAAAAAAAAATTCATGATTGAAAAAAAATTAATAGAGACATAAAATACACTTATAGAACCCTC
TCATAAAAAAAAAAAAGGAAAATTCAT
Found at i:8281611 original size:67 final size:67
Alignment explanation
Indices: 8281534--8281672 Score: 197
Period size: 67 Copynumber: 2.1 Consensus size: 67
8281524 AAATACATGT
* * * *
8281534 TAACATAAAAAAATAAGAATAATTATAAAATTAGTATTATTTGATATAAAATATGTTAGAAATAT
1 TAACATAAAAAAATAAGAATAATCATAAAATTAATATCATTTGACATAAAATATGTTAGAAATAT
*
8281599 TG
66 CG
* * * *
8281601 TAACATAAAAAAATAAGAATAATCATAAAATTAATATCATTTGACGTAAAATGTGTTTGAAATGT
1 TAACATAAAAAAATAAGAATAATCATAAAATTAATATCATTTGACATAAAATATGTTAGAAATAT
8281666 CG
66 CG
8281668 TAACA
1 TAACA
8281673 CTTTAATAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (67 bp):
TAACATAAAAAAATAAGAATAATCATAAAATTAATATCATTTGACATAAAATATGTTAGAAATAT
CG
Found at i:8282043 original size:19 final size:18
Alignment explanation
Indices: 8281966--8282043 Score: 59
Period size: 19 Copynumber: 4.1 Consensus size: 18
8281956 ATTGAAATGC
8281966 AATAAATTTGTAACATAAAA
1 AATAAATTT-TAA-ATAAAA
*
8281986 AATTAATATTATAAATAAAA
1 AA-TAA-ATTTTAAATAAAA
* * *
8282006 TAT-AATTCTAAATTGAAA
1 AATAAATTTTAAA-TAAAA
8282024 AATAAATTTTAAAGTAAAA
1 AATAAATTTTAAA-TAAAA
8282043 A
1 A
8282044 TGTTAAAATA
Statistics
Matches: 46, Mismatches: 8, Indels: 9
0.73 0.13 0.14
Matches are distributed among these distances:
17 7 0.15
18 7 0.15
19 14 0.30
20 9 0.20
21 6 0.13
22 3 0.07
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (18 bp):
AATAAATTTTAAATAAAA
Found at i:8282176 original size:20 final size:20
Alignment explanation
Indices: 8282153--8282227 Score: 53
Period size: 21 Copynumber: 3.6 Consensus size: 20
8282143 AAGAACGAAC
8282153 GTAAAAAATTTTATTGTAAT
1 GTAAAAAATTTTATTGTAAT
* ** *
8282173 GTAAATAATTAAATTGATAAC
1 GTAAAAAATTTTATTG-TAAT
* *
8282194 ATAAAAAATTATTATTATAAAT
1 GTAAAAAATT-TTATTGT-AAT
*
8282216 -AAAAAAATTTTA
1 GTAAAAAATTTTA
8282228 AACTAAAAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 6
0.71 0.19 0.10
Matches are distributed among these distances:
20 16 0.39
21 20 0.49
22 5 0.12
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.39
Consensus pattern (20 bp):
GTAAAAAATTTTATTGTAAT
Found at i:8282779 original size:218 final size:215
Alignment explanation
Indices: 8282389--8283005 Score: 515
Period size: 218 Copynumber: 2.9 Consensus size: 215
8282379 TAATATCTTA
** * * * ** * *
8282389 AAAAAAGAATTGTGATAATTCTAAACGTAATAAAATA-TAACAATAAGTGTAAAAAATATTATTA
1 AAAAAAGAATTAAGATAATTCTAAACAT-ATAAAA-AGTAAGAACAAACGAAAAAAAT-TTATTC
* * * * * *
8282453 TAACGTAAATAAATAACTTAACAACATAAAAGAATTATTATTATAAATATAAAATATTTTTAAAC
63 TAACATAAATAATTAAATTGACAACATAAAAAAATTATTATTATAAATA-AAAATAATTTTAAAC
* * * *
8282518 TAAAAAATAAATGTTCATGTAAAAGATGAGAATAATCGTAAAATT-GATATCATTTCGCT-TAAA
127 AAAAAAAAAAATGTTCATGTAAAAGATAAGAATAATCGTAAAATTAG-TATCATTT-GATGTAAA
* * **
8282581 ATGAA-TTAGAAGTGTTGTAACACTTT
190 AT-AAGTTAGAACTATCATAACACTTT
* * *
8282607 AAAAAA-ATATTAAGATAATTTTAAACATAATAAAAAGTAAGAAC-AAC--AAAAAGTATTATTG
1 AAAAAAGA-ATTAAGATAATTCTAAACAT-ATAAAAAGTAAGAACAAACGAAAAAAAT-TTATTC
* * * * * *
8282668 TAATATCAATAATTAAGTTGACAACGTAAACAAATTATTATTATAAATAAAAATAATTTTGAACA
63 TAACATAAATAATTAAATTGACAACATAAAAAAATTATTATTATAAATAAAAATAATTTTAAAC-
*
8282733 AAAAAAAAAACAGTGTTAACAT-TAAAA-AGTAAGAATAATTGTAAAATTAGTATCATTTGATGT
127 AAAAAAAAAA-A-TGTT--CATGTAAAAGA-TAAGAATAATCGTAAAATTAGTATCATTTGATGT
8282796 AAAATAAGTTAGAACTATCATAACACTTT
187 AAAATAAGTTAGAACTATCATAACACTTT
** * * * *
8282825 AAAAAAGAATTGTGATAATTCTAGACGTATGAAATGTAAGAACAAACGTAAAAAAATTTATTCTA
1 AAAAAAGAATTAAGATAATTCTAAACATATAAAAAGTAAGAACAAACG-AAAAAAATTTATTCTA
* * * *
8282890 ACGTAAATAATTAAATTGTCAACATAAAAAAATTATTATTATAAATAAAAA-AA--TTCAA-TAA
65 ACATAAATAATTAAATTGACAACATAAAAAAATTATTATTATAAATAAAAATAATTTTAAACAAA
* * * * * * * *
8282951 AAAATAAGTGTTTATGTAAAAAAGTAAAAATAATCATAAAATTTGTATCGTTTGA
130 AAAAAAAATGTTCATGTAAAAGA-TAAGAATAATCGTAAAATTAGTATCATTTGA
8283006 CATAAAAATG
Statistics
Matches: 325, Mismatches: 56, Indels: 41
0.77 0.13 0.10
Matches are distributed among these distances:
211 2 0.01
212 5 0.02
213 32 0.10
214 13 0.04
215 68 0.21
216 1 0.00
217 29 0.09
218 111 0.34
219 7 0.02
220 51 0.16
221 6 0.02
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.31
Consensus pattern (215 bp):
AAAAAAGAATTAAGATAATTCTAAACATATAAAAAGTAAGAACAAACGAAAAAAATTTATTCTAA
CATAAATAATTAAATTGACAACATAAAAAAATTATTATTATAAATAAAAATAATTTTAAACAAAA
AAAAAAATGTTCATGTAAAAGATAAGAATAATCGTAAAATTAGTATCATTTGATGTAAAATAAGT
TAGAACTATCATAACACTTT
Found at i:8283134 original size:20 final size:19
Alignment explanation
Indices: 8283088--8283141 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
8283078 AAACAAGTTG
*
8283088 TTATAACGTAAATAATTAAA
1 TTATAACATAAA-AATTAAA
*
8283108 TTGATAACATAAAAATTATTA
1 TT-ATAACATAAAAATTA-AA
8283129 TTATAA-ATAAAAA
1 TTATAACATAAAAA
8283142 ATAATTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
19 7 0.23
20 11 0.37
21 12 0.40
ACGTcount: A:0.57, C:0.04, G:0.04, T:0.35
Consensus pattern (19 bp):
TTATAACATAAAAATTAAA
Found at i:8283364 original size:15 final size:15
Alignment explanation
Indices: 8283344--8283388 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
8283334 GAATTGATAT
*
8283344 TTTTAAATTAAAAGA
1 TTTTAAATTAAAAAA
8283359 TTTTAAA-TAAAAAA
1 TTTTAAATTAAAAAA
*
8283373 TTATTAATTTAAAAAA
1 TT-TTAAATTAAAAAA
8283389 GATGAGAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 8 0.31
15 11 0.42
16 7 0.27
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TTTTAAATTAAAAAA
Found at i:8284354 original size:1 final size:1
Alignment explanation
Indices: 8284348--8284378 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
8284338 AAACTCAGGT
*
8284348 AAAAAAAAAAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8284379 GAAAGCTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:8284379 original size:10 final size:10
Alignment explanation
Indices: 8284350--8284382 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
8284340 ACTCAGGTAA
*
8284350 AAAAAAAAAA
1 AAAAAAAAAG
8284360 AAAAAAAAAG
1 AAAAAAAAAG
8284370 AAAAAAAAAG
1 AAAAAAAAAG
8284380 AAA
1 AAA
8284383 GCTTTTACTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:8284383 original size:14 final size:13
Alignment explanation
Indices: 8284348--8284383 Score: 56
Period size: 12 Copynumber: 2.8 Consensus size: 13
8284338 AAACTCAGGT
8284348 AAAAAAAAA-AAA
1 AAAAAAAAAGAAA
8284360 AAAAAAAAAGAAA
1 AAAAAAAAAGAAA
8284373 AAAAAAGAAAG
1 AAAAAA-AAAG
8284384 CTTTTACTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 9 0.41
13 9 0.41
14 4 0.18
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAAGAAA
Found at i:8288847 original size:27 final size:27
Alignment explanation
Indices: 8288807--8288868 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
8288797 TTATTGTTTG
* *
8288807 ATAATTGTCATAATTAAATTTAATTTT-
1 ATAATTATAATAATT-AATTTAATTTTC
* *
8288834 ATTATTATAATAATTAATTTCATTTTC
1 ATAATTATAATAATTAATTTAATTTTC
8288861 ATAATTAT
1 ATAATTAT
8288869 TTTTAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 10 0.34
27 19 0.66
ACGTcount: A:0.40, C:0.05, G:0.02, T:0.53
Consensus pattern (27 bp):
ATAATTATAATAATTAATTTAATTTTC
Found at i:8288864 original size:21 final size:21
Alignment explanation
Indices: 8288826--8288865 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8288816 ATAATTAAAT
*
8288826 TTAATTTTATTATTATAATAA
1 TTAATTTCATTATTATAATAA
8288847 TTAATTTCATT-TTCATAAT
1 TTAATTTCATTATT-ATAAT
8288866 TATTTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 2 0.12
21 15 0.88
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TTAATTTCATTATTATAATAA
Found at i:8289640 original size:27 final size:28
Alignment explanation
Indices: 8289609--8289668 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
8289599 TTAATTACAG
* * *
8289609 TAAAATATTTGATTTGATATTTTAATT-
1 TAAAATATTTAATGTGATATTTAAATTA
*
8289636 TAAAAATTTTTAATGTGATATTTAAATTA
1 T-AAAATATTTAATGTGATATTTAAATTA
8289665 TAAA
1 TAAA
8289669 TTTATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
27 1 0.04
28 25 0.93
29 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (28 bp):
TAAAATATTTAATGTGATATTTAAATTA
Found at i:8297759 original size:17 final size:15
Alignment explanation
Indices: 8297733--8297779 Score: 60
Period size: 17 Copynumber: 3.1 Consensus size: 15
8297723 ATATTTTAAT
*
8297733 ATTTTATATAATAAA
1 ATTTTGTATAATAAA
8297748 ACTTTATGTATAATAAA
1 A-TTT-TGTATAATAAA
8297765 ATTTTGTA-AATAAA
1 ATTTTGTATAATAAA
8297779 A
1 A
8297780 GAAAATTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
14 7 0.24
15 5 0.17
16 6 0.21
17 11 0.38
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (15 bp):
ATTTTGTATAATAAA
Found at i:8297776 original size:14 final size:17
Alignment explanation
Indices: 8297739--8297779 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
8297729 TAATATTTTA
8297739 TATAATAAAACTTTATG
1 TATAATAAAACTTTATG
8297756 TATAATAAAA-TTT-TG
1 TATAATAAAACTTTATG
8297771 TA-AATAAAA
1 TATAATAAAA
8297780 GAAAATTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.29
15 4 0.17
16 3 0.12
17 10 0.42
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (17 bp):
TATAATAAAACTTTATG
Found at i:8301152 original size:22 final size:22
Alignment explanation
Indices: 8301127--8301177 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
8301117 AAAATTAGTA
8301127 ATAACTTAAT-ATTAAATGAA-TG
1 ATAACTTAATAATT-AAT-AATTG
* *
8301149 ATAATTTAGTAATTAATAATTG
1 ATAACTTAATAATTAATAATTG
8301171 ATAACTT
1 ATAACTT
8301178 TTTAGTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
21 2 0.08
22 19 0.79
23 3 0.12
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (22 bp):
ATAACTTAATAATTAATAATTG
Found at i:8301341 original size:22 final size:22
Alignment explanation
Indices: 8301316--8301764 Score: 135
Period size: 22 Copynumber: 20.9 Consensus size: 22
8301306 AGTTCATTAT
* *
8301316 TGATAACTTAGTATTAAATCAA
1 TGATAACTTAATAGTAAATCAA
*
8301338 TGATAACTTAATAGTAAATTAA
1 TGATAACTTAATAGTAAATCAA
*
8301360 TGATAATTTAATAGTAAATCAA
1 TGATAACTTAATAGTAAATCAA
** ** *
8301382 TTTTAGTTTAATAGT-AATTAA
1 TGATAACTTAATAGTAAATCAA
* *
8301403 T--TGA--TAGTAGTAAATC-A
1 TGATAACTTAATAGTAAATCAA
* * * *
8301420 TAAATAACTTAGTAGCAAGTCAA
1 T-GATAACTTAATAGTAAATCAA
* *
8301443 TTATAAATTAATAGTAAAT-AA
1 TGATAACTTAATAGTAAATCAA
* * * * * *
8301464 TTAAAATTTTAATAATTAATCAT
1 TGATAA-CTTAATAGTAAATCAA
* * * * *
8301487 TAAAAACTTAAAAATAAATCAG
1 TGATAACTTAATAGTAAATCAA
* * *
8301509 T-ATAATTTAATAGTAACTCAT
1 TGATAACTTAATAGTAAATCAA
* * * * *
8301530 TAATAACATAATAATTAACCAA
1 TGATAACTTAATAGTAAATCAA
8301552 TGATAACTTAATAGTAAATC-A
1 TGATAACTTAATAGTAAATCAA
* *
8301573 TGCATAATTTAATA-TAAATCAG
1 TG-ATAACTTAATAGTAAATCAA
* * ** * * *
8301595 TAATAATTTGGTAGTGACT-TA
1 TGATAACTTAATAGTAAATCAA
* *
8301616 TAGATAATTTAATAGTAAATCAG
1 T-GATAACTTAATAGTAAATCAA
* * * *
8301639 TGATAATTTTATAATAAGT-AA
1 TGATAACTTAATAGTAAATCAA
* *
8301660 TTGA-AAATTAAGTACTAAATCAA
1 -TGATAACTTAA-TAGTAAATCAA
*
8301683 TGATTAA-ATAATAGTAAAT-ACA
1 TGA-TAACTTAATAGTAAATCA-A
* * * *
8301705 TAACAA-TATAATAGTAGATCAT
1 TGATAACT-TAATAGTAAATCAA
* * *
8301727 TTATAATTTAGTAGTAAAT---
1 TGATAACTTAATAGTAAATCAA
8301746 TGATAACTTAATAGTAAAT
1 TGATAACTTAATAGTAAAT
8301765 TACTAATAAC
Statistics
Matches: 316, Mismatches: 87, Indels: 51
0.70 0.19 0.11
Matches are distributed among these distances:
17 8 0.03
18 3 0.01
19 17 0.05
20 2 0.01
21 56 0.18
22 212 0.67
23 16 0.05
24 2 0.01
ACGTcount: A:0.48, C:0.06, G:0.09, T:0.37
Consensus pattern (22 bp):
TGATAACTTAATAGTAAATCAA
Found at i:8301519 original size:65 final size:66
Alignment explanation
Indices: 8301444--8301600 Score: 158
Period size: 65 Copynumber: 2.4 Consensus size: 66
8301434 GCAAGTCAAT
* ** * *
8301444 TATAAATTAATAGTAAATAATTAA-AATTTTAATAATTAATCATTAAAAACTTAAAAATAAATCA
1 TATAATTTAATAGTAAATAATTAATAA-CATAATAATTAACCAATAAAAACTTAAAAATAAATCA
8301508 -G
65 TG
* * * * * *
8301509 TATAATTTAATAGTAACTCATTAATAACATAATAATTAACCAATGATAACTTAATAGTAAATCAT
1 TATAATTTAATAGTAAATAATTAATAACATAATAATTAACCAATAAAAACTTAAAAATAAATCAT
8301574 G
66 G
* * *
8301575 CATAATTTAATA-TAAATCAGTAATAA
1 TATAATTTAATAGTAAATAATTAATAA
8301601 TTTGGTAGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
65 62 0.82
66 14 0.18
ACGTcount: A:0.53, C:0.08, G:0.04, T:0.35
Consensus pattern (66 bp):
TATAATTTAATAGTAAATAATTAATAACATAATAATTAACCAATAAAAACTTAAAAATAAATCAT
G
Found at i:8301833 original size:22 final size:22
Alignment explanation
Indices: 8301729--8301834 Score: 85
Period size: 22 Copynumber: 5.0 Consensus size: 22
8301719 TAGATCATTT
8301729 ATAATTTAGTAGTAAATT-G--
1 ATAATTTAGTAGTAAATTAGTA
* * *
8301748 ATAACTTAATAGTAAATTACTA
1 ATAATTTAGTAGTAAATTAGTA
** * *
8301770 ATAACATAAT-GATAAATTAATA
1 ATAATTTAGTAG-TAAATTAGTA
* * *
8301792 ATAATTTAGTTGTAGATTAGTG
1 ATAATTTAGTAGTAAATTAGTA
8301814 ATAATTTAGTAGTAAATTAGT
1 ATAATTTAGTAGTAAATTAGT
8301835 TGATTATTGA
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
19 16 0.23
21 1 0.01
22 51 0.74
23 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.40
Consensus pattern (22 bp):
ATAATTTAGTAGTAAATTAGTA
Found at i:8301977 original size:22 final size:21
Alignment explanation
Indices: 8301886--8301977 Score: 67
Period size: 22 Copynumber: 4.2 Consensus size: 21
8301876 TAAATCAGTT
* * *
8301886 ATAATTTTATAATAAATTATT
1 ATAATTTAATGATAAATTATC
* * *
8301907 ATTAACTTAGTGATAAATTACC
1 A-TAATTTAATGATAAATTATC
* * *
8301929 AATAATTTAATGGTAAATCATTT
1 -ATAATTTAATGATAAATTA-TC
8301952 ATAATTTAATGATAAATTATGC
1 ATAATTTAATGATAAATTAT-C
8301974 ATAA
1 ATAA
8301978 ATTAGTAGTA
Statistics
Matches: 52, Mismatches: 15, Indels: 7
0.70 0.20 0.09
Matches are distributed among these distances:
21 2 0.04
22 49 0.94
23 1 0.02
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (21 bp):
ATAATTTAATGATAAATTATC
Found at i:8302047 original size:22 final size:22
Alignment explanation
Indices: 8301929--8302068 Score: 93
Period size: 22 Copynumber: 6.4 Consensus size: 22
8301919 ATAAATTACC
* * *
8301929 AATAATTTAATGGTAAATCATT
1 AATAACTTAATAGTAAATAATT
* * * *
8301951 TATAATTTAAT-GATAAATTATG
1 AATAACTTAATAG-TAAATAATT
* * *
8301973 CATAAATTAGTAGTAAATAATT
1 AATAACTTAATAGTAAATAATT
* * * *
8301995 GATAATTTTATTGTAAATAATT
1 AATAACTTAATAGTAAATAATT
* *
8302017 TATATCTTAATAGTAAATAATT
1 AATAACTTAATAGTAAATAATT
* * *
8302039 AATAACTTAATTGTCAATCATT
1 AATAACTTAATAGTAAATAATT
8302061 AATAACTT
1 AATAACTT
8302069 TTCTTATACT
Statistics
Matches: 93, Mismatches: 23, Indels: 4
0.77 0.19 0.03
Matches are distributed among these distances:
21 1 0.01
22 91 0.98
23 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (22 bp):
AATAACTTAATAGTAAATAATT
Found at i:8302747 original size:31 final size:31
Alignment explanation
Indices: 8302709--8302767 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
8302699 AAATAATTTA
*
8302709 CTTATTAATGAGGTATTATTATCTGATTTGC
1 CTTATTAATGAGGTATCATTATCTGATTTGC
*
8302740 CTTATTAATGAGTTATCATTATCTGATT
1 CTTATTAATGAGGTATCATTATCTGATT
8302768 CACCGATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.14, T:0.49
Consensus pattern (31 bp):
CTTATTAATGAGGTATCATTATCTGATTTGC
Found at i:8303233 original size:22 final size:22
Alignment explanation
Indices: 8303182--8303244 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
8303172 ATCAAAATTA
8303182 AATAATAAATCAATAGTAACAT
1 AATAATAAATCAATAGTAACAT
* *
8303204 AATTATAAATGC-ATTGTAA-AT
1 AATAATAAAT-CAATAGTAACAT
8303225 ACATAATAACAT-AATAGTAA
1 A-ATAATAA-ATCAATAGTAA
8303245 ATTATTGATA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
21 3 0.09
22 27 0.82
23 3 0.09
ACGTcount: A:0.56, C:0.08, G:0.06, T:0.30
Consensus pattern (22 bp):
AATAATAAATCAATAGTAACAT
Found at i:8303266 original size:44 final size:43
Alignment explanation
Indices: 8303218--8303342 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 43
8303208 ATAAATGCAT
* * *
8303218 TGTAAATACATAATAACATAATAGTAAATTATTGATAATTTAGA
1 TGTAAATA-ATAATAACTTAGTAGTAAATTATTGATAACTTAGA
* * * * * *
8303262 TGTAAATTATTAATAACTTAGTAATAAATCACTAATAACTTAGT
1 TGTAAA-TAATAATAACTTAGTAGTAAATTATTGATAACTTAGA
*
8303306 TGTAAATAAATAATAATTTAGTAGTAAATTGATTGAT
1 TGTAAAT-AATAATAACTTAGTAGTAAATT-ATTGAT
8303343 CATTGATAAT
Statistics
Matches: 63, Mismatches: 15, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
43 1 0.02
44 56 0.89
45 6 0.10
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (43 bp):
TGTAAATAATAATAACTTAGTAGTAAATTATTGATAACTTAGA
Found at i:8303282 original size:22 final size:22
Alignment explanation
Indices: 8303228--8303335 Score: 101
Period size: 22 Copynumber: 4.9 Consensus size: 22
8303218 TGTAAATACA
* *
8303228 TAATAACATAATAGTAAATTAT
1 TAATAACTTAGTAGTAAATTAT
* *
8303250 TGATAATTTAG-ATGTAAATTAT
1 TAATAACTTAGTA-GTAAATTAT
* * *
8303272 TAATAACTTAGTAATAAATCAC
1 TAATAACTTAGTAGTAAATTAT
* * *
8303294 TAATAACTTAGTTGTAAATAAA
1 TAATAACTTAGTAGTAAATTAT
*
8303316 TAATAATTTAGTAGTAAATT
1 TAATAACTTAGTAGTAAATT
8303336 GATTGATCAT
Statistics
Matches: 68, Mismatches: 16, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
21 1 0.01
22 66 0.97
23 1 0.01
ACGTcount: A:0.48, C:0.05, G:0.08, T:0.39
Consensus pattern (22 bp):
TAATAACTTAGTAGTAAATTAT
Found at i:8303471 original size:22 final size:21
Alignment explanation
Indices: 8303420--8303497 Score: 84
Period size: 22 Copynumber: 3.6 Consensus size: 21
8303410 CGCCGGTAAC
*
8303420 TTAGTAGTAAATTATTAATAA
1 TTAGTAGTAAATTATTCATAA
* * *
8303441 TCTAATAGTAAATTAATCATGAC
1 T-TAGTAGTAAATTATTCAT-AA
*
8303464 TTAGTAGTAAATTATTCAAAAA
1 TTAGTAGTAAATTATTC-ATAA
8303486 TTAGTAGTAAAT
1 TTAGTAGTAAAT
8303498 CAATACTAAT
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.02
22 42 0.91
23 3 0.07
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.38
Consensus pattern (21 bp):
TTAGTAGTAAATTATTCATAA
Found at i:8308349 original size:20 final size:21
Alignment explanation
Indices: 8308312--8308350 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8308302 CAGTGGATAG
*
8308312 ATTGAAGAGAGGGAATGAGGT
1 ATTGAAGAGAGAGAATGAGGT
8308333 ATTGAAGA-AGAGAATGAG
1 ATTGAAGAGAGAGAATGAG
8308351 TCTGGCTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.38, T:0.18
Consensus pattern (21 bp):
ATTGAAGAGAGAGAATGAGGT
Found at i:8318788 original size:17 final size:17
Alignment explanation
Indices: 8318745--8318798 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
8318735 TATTTTAATA
8318745 TTTTATATAATAAAAAT
1 TTTTATATAATAAAAAT
* *
8318762 TTATGTATAATAAAAAT
1 TTTTATATAATAAAAAT
* *
8318779 TTTTAAATAAAAGAAAAT
1 TTTTATATAATA-AAAAT
8318797 TT
1 TT
8318799 AAGCTTTTGG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
17 23 0.77
18 7 0.23
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (17 bp):
TTTTATATAATAAAAAT
Found at i:8320372 original size:12 final size:12
Alignment explanation
Indices: 8320355--8320394 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
8320345 ATTTTTAATG
8320355 TAAATATAAAAT
1 TAAATATAAAAT
*
8320367 TAAATAT-ATAT
1 TAAATATAAAAT
8320378 ATAAATATAAAAT
1 -TAAATATAAAAT
8320391 TAAA
1 TAAA
8320395 AAATAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 3 0.12
12 18 0.75
13 3 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
TAAATATAAAAT
Found at i:8322881 original size:22 final size:22
Alignment explanation
Indices: 8322842--8323103 Score: 86
Period size: 22 Copynumber: 11.9 Consensus size: 22
8322832 AGTAATCATC
* **
8322842 AATAAATTAATAAAAAATTAGT
1 AATAATTTAATAGTAAATTAGT
* *
8322864 AATAATTTAATAGTAAATAAAT
1 AATAATTTAATAGTAAATTAGT
* * * * *
8322886 GATAATTTAGTAGTCAATAATT
1 AATAATTTAATAGTAAATTAGT
*
8322908 AATAACATTT--TAGTAAATCAGT
1 AAT-A-ATTTAATAGTAAATTAGT
* *
8322930 AATAATATAATAATAAATGTA-T
1 AATAATTTAATAGTAAAT-TAGT
* *
8322952 AAT-ATCTTAATAGTAAATCAAT
1 AATAAT-TTAATAGTAAATTAGT
* * *
8322974 TATAATATAATAATAAA-TACGT
1 AATAATTTAATAGTAAATTA-GT
* * ** * *
8322996 AACAATATCGTACTAAATCAAG-
1 AATAATTTAATAGTAAAT-TAGT
* ** *
8323018 GATAATTTAATAAAAAATAAGT
1 AATAATTTAATAGTAAATTAGT
* * * *
8323040 AATAATTCAGTAGTTAATTATT
1 AATAATTTAATAGTAAATTAGT
* * * * *
8323062 AATAACTTAGTATTAAATCAAT
1 AATAATTTAATAGTAAATTAGT
*
8323084 GATAATTTAATAGTAAATTA
1 AATAATTTAATAGTAAATTA
8323104 ATTTCAGTTT
Statistics
Matches: 172, Mismatches: 56, Indels: 24
0.68 0.22 0.10
Matches are distributed among these distances:
20 3 0.02
21 8 0.05
22 151 0.88
23 5 0.03
24 5 0.03
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (22 bp):
AATAATTTAATAGTAAATTAGT
Found at i:8322955 original size:44 final size:44
Alignment explanation
Indices: 8322822--8322991 Score: 127
Period size: 44 Copynumber: 3.9 Consensus size: 44
8322812 TATAATTAGT
* *
8322822 ATAACTTAGTAGT-AATC-ATCAATAA-ATTAATAAAAAAT-TAGTA
1 ATAACTTAATAGTAAATCAAT-AATAATA-TAATAATAAATGTA-TA
* * * * * * * *
8322865 ATAATTTAATAGTAAATAAATGATAATTTAGTAGTCAAT-AATTA
1 ATAACTTAATAGTAAATCAATAATAATATAATAATAAATGTA-TA
* *
8322909 ATAACATT-TTAGTAAATCAGTAATAATATAATAATAAATGTATA
1 ATAAC-TTAATAGTAAATCAATAATAATATAATAATAAATGTATA
* *
8322953 ATATCTTAATAGTAAATCAATTATAATATAATAATAAAT
1 ATAACTTAATAGTAAATCAATAATAATATAATAATAAAT
8322992 ACGTAACAAT
Statistics
Matches: 96, Mismatches: 25, Indels: 11
0.73 0.19 0.08
Matches are distributed among these distances:
43 13 0.14
44 78 0.81
45 5 0.05
ACGTcount: A:0.52, C:0.05, G:0.06, T:0.36
Consensus pattern (44 bp):
ATAACTTAATAGTAAATCAATAATAATATAATAATAAATGTATA
Found at i:8323292 original size:22 final size:22
Alignment explanation
Indices: 8323133--8323294 Score: 100
Period size: 22 Copynumber: 7.5 Consensus size: 22
8323123 TAATTAATAG
** *
8323133 TAGTAAATCATAAATAACTTAG
1 TAGTAAATCATTGATAACTTAA
* *
8323155 TAGTAAGTCAATT-ATAAATTAA
1 TAGTAAATC-ATTGATAACTTAA
* * *
8323177 TAGTAAATAATTGAAAACTTAG
1 TAGTAAATCATTGATAACTTAA
* * * * *
8323199 TAATTAATAATTGAAAATTTAA
1 TAGTAAATCATTGATAACTTAA
*
8323221 AAGTAAATCA--G-TAAC-TAA
1 TAGTAAATCATTGATAACTTAA
* * *
8323239 GTAGTAAATTATCGATAACATAA
1 -TAGTAAATCATTGATAACTTAA
* *
8323262 TAATTAATCATTGATAACTTAA
1 TAGTAAATCATTGATAACTTAA
8323284 TAGTAAATCAT
1 TAGTAAATCAT
8323295 GCAAATTTAA
Statistics
Matches: 105, Mismatches: 28, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
18 3 0.03
19 10 0.10
20 1 0.01
21 4 0.04
22 82 0.78
23 5 0.05
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.34
Consensus pattern (22 bp):
TAGTAAATCATTGATAACTTAA
Found at i:8323600 original size:11 final size:11
Alignment explanation
Indices: 8323584--8323701 Score: 67
Period size: 11 Copynumber: 10.7 Consensus size: 11
8323574 GTAATCAACG
8323584 ATAAATTAATA
1 ATAAATTAATA
* *
8323595 ATAAATTAGTT
1 ATAAATTAATA
* *
8323606 ATAATTTTATA
1 ATAAATTAATA
*
8323617 ATAAATTATTA
1 ATAAATTAATA
*
8323628 ATAAATTAATG
1 ATAAATTAATA
* *
8323639 GTAAA-TCATCA
1 ATAAATTAAT-A
* *
8323650 ATAATTTAATG
1 ATAAATTAATA
* * *
8323661 ATAAATCATTC
1 ATAAATTAATA
*
8323672 ATAATTTAATA
1 ATAAATTAATA
* * *
8323683 GTAAATTATTC
1 ATAAATTAATA
8323694 ATAAATTA
1 ATAAATTA
8323702 GTAGTAAATC
Statistics
Matches: 74, Mismatches: 31, Indels: 4
0.68 0.28 0.04
Matches are distributed among these distances:
10 3 0.04
11 68 0.92
12 3 0.04
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (11 bp):
ATAAATTAATA
Found at i:8323631 original size:22 final size:22
Alignment explanation
Indices: 8323584--8323788 Score: 135
Period size: 22 Copynumber: 9.3 Consensus size: 22
8323574 GTAATCAACG
* *
8323584 ATAAATTAATAATAAATTAGTT-
1 ATAATTTAATAATAAATCA-TTA
* *
8323606 ATAATTTTATAATAAATTATTA
1 ATAATTTAATAATAAATCATTA
* ** *
8323628 ATAAATTAATGGTAAATCATCA
1 ATAATTTAATAATAAATCATTA
* *
8323650 ATAATTTAATGATAAATCATTC
1 ATAATTTAATAATAAATCATTA
* * *
8323672 ATAATTTAATAGTAAATTATTC
1 ATAATTTAATAATAAATCATTA
* * * *
8323694 ATAAATTAGTAGTAAATCATTG
1 ATAATTTAATAATAAATCATTA
* * *
8323716 ATAATTTGATAATAAATAATTT
1 ATAATTTAATAATAAATCATTA
* * * *
8323738 AT-ATCTTAGTAGTAAATAATTG
1 ATAAT-TTAATAATAAATCATTA
* * *
8323760 ATAACTTAATTATCAATCATTA
1 ATAATTTAATAATAAATCATTA
8323782 ATAATTT
1 ATAATTT
8323789 TTTTTTGTAC
Statistics
Matches: 143, Mismatches: 37, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
21 4 0.03
22 138 0.97
23 1 0.01
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (22 bp):
ATAATTTAATAATAAATCATTA
Found at i:8323688 original size:66 final size:65
Alignment explanation
Indices: 8323584--8323788 Score: 198
Period size: 66 Copynumber: 3.1 Consensus size: 65
8323574 GTAATCAACG
* * * * * *
8323584 ATAAATTAATAATAAATTAGTTATAATTTTATAATAAATTATTAATAAATTAATGGTAAATCATC
1 ATAATTTAATAATAAA-TAATTATAATTTAATAGTAAATTATTAATAAATTAATAGTAAATCATT
8323649 A
65 A
* * * *
8323650 ATAATTTAATGATAAATCATTCATAATTTAATAGTAAATTATTCATAAATTAGTAGTAAATCATT
1 ATAATTTAATAATAAATAATT-ATAATTTAATAGTAAATTATTAATAAATTAATAGTAAATCATT
*
8323715 G
65 A
* * * * * *
8323716 ATAATTTGATAATAAATAATT-TATATCTTAGTAGTAAATAATTGATAACTTAATTA-TCAATCA
1 ATAATTTAATAATAAATAATTATA-AT-TTAATAGTAAATTATTAATAAATTAA-TAGTAAATCA
8323779 TTA
63 TTA
8323782 ATAATTT
1 ATAATTT
8323789 TTTTTTGTAC
Statistics
Matches: 114, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
64 2 0.02
65 5 0.04
66 105 0.92
67 2 0.02
ACGTcount: A:0.47, C:0.05, G:0.06, T:0.42
Consensus pattern (65 bp):
ATAATTTAATAATAAATAATTATAATTTAATAGTAAATTATTAATAAATTAATAGTAAATCATTA
Found at i:8324074 original size:22 final size:21
Alignment explanation
Indices: 8324024--8324083 Score: 50
Period size: 22 Copynumber: 2.8 Consensus size: 21
8324014 AACAACATAT
* *
8324024 TAATAATTAATGATACGTTAA
1 TAATAAATAATGATAAGTTAA
*
8324045 TAGA-AAATAATTGATAATTTAA
1 TA-ATAAATAA-TGATAAGTTAA
*
8324067 TAATAAATCAATAATAA
1 TAATAAAT-AATGATAA
8324084 CTTAGTAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
21 8 0.26
22 21 0.68
23 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.35
Consensus pattern (21 bp):
TAATAAATAATGATAAGTTAA
Found at i:8324346 original size:22 final size:22
Alignment explanation
Indices: 8324321--8324390 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
8324311 TAAATCAATG
8324321 ATAATATAGTTGTAAATGTATA
1 ATAATATAGTTGTAAATGTATA
* * *
8324343 ATAACATAATAGTAAATTGT-TA
1 ATAATATAGTTGTAAA-TGTATA
* *
8324365 ATAATTTAGATGTAAAT-TATTA
1 ATAATATAGTTGTAAATGTA-TA
8324387 ATAA
1 ATAA
8324391 CTTAATAGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
20 1 0.03
21 1 0.03
22 32 0.86
23 3 0.08
ACGTcount: A:0.49, C:0.01, G:0.10, T:0.40
Consensus pattern (22 bp):
ATAATATAGTTGTAAATGTATA
Found at i:8324356 original size:44 final size:44
Alignment explanation
Indices: 8324308--8324412 Score: 122
Period size: 44 Copynumber: 2.4 Consensus size: 44
8324298 GAAAATTAAG
* *
8324308 TAGTAAATCAATGATAATATAGTTGTAAATGTA-TAATAACATAA
1 TAGTAAATCAATAATAATATAGATGTAAAT-TATTAATAACATAA
*** * *
8324352 TAGTAAATTGTTAATAATTTAGATGTAAATTATTAATAACTTAA
1 TAGTAAATCAATAATAATATAGATGTAAATTATTAATAACATAA
*
8324396 TAGTAAATCACTAATAA
1 TAGTAAATCAATAATAA
8324413 CTTAATTGTG
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 2 0.04
44 48 0.96
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.37
Consensus pattern (44 bp):
TAGTAAATCAATAATAATATAGATGTAAATTATTAATAACATAA
Found at i:8324401 original size:22 final size:22
Alignment explanation
Indices: 8324332--8324455 Score: 108
Period size: 22 Copynumber: 5.6 Consensus size: 22
8324322 TAATATAGTT
*
8324332 GTAAATGTA-TAATAACATAATA
1 GTAAAT-TATTAATAACTTAATA
* *
8324354 GTAAATTGTTAATAATTTAGAT-
1 GTAAATTATTAATAACTTA-ATA
8324376 GTAAATTATTAATAACTTAATA
1 GTAAATTATTAATAACTTAATA
* * *
8324398 GTAAATCACTAATAACTTAATT
1 GTAAATTATTAATAACTTAATA
* * * * *
8324420 GTGAATCAATAATAATTTAGTA
1 GTAAATTATTAATAACTTAATA
8324442 GTAAATTGATTAAT
1 GTAAATT-ATTAAT
8324456 CATTTATAAC
Statistics
Matches: 82, Mismatches: 16, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
21 3 0.04
22 72 0.88
23 7 0.09
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.39
Consensus pattern (22 bp):
GTAAATTATTAATAACTTAATA
Found at i:8324433 original size:44 final size:44
Alignment explanation
Indices: 8324303--8324447 Score: 114
Period size: 44 Copynumber: 3.3 Consensus size: 44
8324293 TAATTGAAAA
* * * **
8324303 TTAAGTAGTAAATCAATGATAA-TATAGTTGTAAATGTATAATAAC
1 TTAA-TAGTAAATCACTAATAACT-TAGATGTAAATCAATAATAAC
* *** * * *
8324348 ATAATAGTAAATTGTTAATAATTTAGATGTAAATTATTAATAAC
1 TTAATAGTAAATCACTAATAACTTAGATGTAAATCAATAATAAC
* *
8324392 TTAATAGTAAATCACTAATAACTTA-ATTGTGAATCAATAATAAT
1 TTAATAGTAAATCACTAATAACTTAGA-TGTAAATCAATAATAAC
*
8324436 TTAGTAGTAAAT
1 TTAATAGTAAAT
8324448 TGATTAATCA
Statistics
Matches: 79, Mismatches: 19, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
43 1 0.01
44 74 0.94
45 4 0.05
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (44 bp):
TTAATAGTAAATCACTAATAACTTAGATGTAAATCAATAATAAC
Found at i:8324586 original size:22 final size:22
Alignment explanation
Indices: 8324470--8324596 Score: 62
Period size: 22 Copynumber: 5.8 Consensus size: 22
8324460 TATAACTTTG
* * *
8324470 TAATAAATCATTAATAAATTAA
1 TAATAAATCAGTCATAATTTAA
* * * *
8324492 TAGTAAATTCAATTATAATTTTA
1 TAATAAA-TCAGTCATAATTTAA
* * *
8324515 TAACAAATCA-TCAGTAACTTAG
1 TAATAAATCAGTCA-TAATTTAA
* *
8324537 TAAT-AATTA-TCAATGATTTAA
1 TAATAAATCAGTC-ATAATTTAA
*
8324558 TAATAAATCAGTCATAATTTAG
1 TAATAAATCAGTCATAATTTAA
* * *
8324580 TAGTAAATTATTCATAA
1 TAATAAATCAGTCATAA
8324597 ATCAGTGCTA
Statistics
Matches: 78, Mismatches: 22, Indels: 10
0.71 0.20 0.09
Matches are distributed among these distances:
21 17 0.22
22 43 0.55
23 18 0.23
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.39
Consensus pattern (22 bp):
TAATAAATCAGTCATAATTTAA
Found at i:8324598 original size:33 final size:33
Alignment explanation
Indices: 8324560--8324629 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
8324550 TGATTTAATA
*
8324560 ATAAATCAGT-CATAATTTAGTAGTAAATTATTC
1 ATAAATCAGTGC-TAATTTAGTAGTAAATCATTC
*
8324593 ATAAATCAGTGCTAATTTAGTAGTAAATCATTG
1 ATAAATCAGTGCTAATTTAGTAGTAAATCATTC
8324626 ATAA
1 ATAA
8324630 TTTAGTAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.43, C:0.09, G:0.11, T:0.37
Consensus pattern (33 bp):
ATAAATCAGTGCTAATTTAGTAGTAAATCATTC
Found at i:8324619 original size:22 final size:22
Alignment explanation
Indices: 8324594--8324674 Score: 92
Period size: 22 Copynumber: 3.7 Consensus size: 22
8324584 AAATTATTCA
* *
8324594 TAAATCAGTGCTAATTTAGTAG
1 TAAATCATTGATAATTTAGTAG
8324616 TAAATCATTGATAATTTAGTAG
1 TAAATCATTGATAATTTAGTAG
* * *
8324638 TATATCATTGTTAACTTAGTAG
1 TAAATCATTGATAATTTAGTAG
*
8324660 GAAATC-TCTGATAAT
1 TAAATCAT-TGATAAT
8324675 ATAATAGTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
21 1 0.02
22 48 0.98
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.40
Consensus pattern (22 bp):
TAAATCATTGATAATTTAGTAG
Found at i:8325127 original size:21 final size:21
Alignment explanation
Indices: 8325040--8325138 Score: 83
Period size: 21 Copynumber: 4.7 Consensus size: 21
8325030 TATTAAGAGG
*
8325040 TTACTAAAATTTTATAAAAAA
1 TTACCAAAATTTTATAAAAAA
* **
8325061 TTATCC-AAATTTTATCAATGA
1 TTA-CCAAAATTTTATAAAAAA
* * * * *
8325082 TTATCAAAATTATATCATAAG
1 TTACCAAAATTTTATAAAAAA
*
8325103 TTACCAAAATTGTATAAAAAA
1 TTACCAAAATTTTATAAAAAA
*
8325124 TTACTAAAATTTTAT
1 TTACCAAAATTTTAT
8325139 CAAAGGTTTT
Statistics
Matches: 59, Mismatches: 17, Indels: 4
0.74 0.21 0.05
Matches are distributed among these distances:
20 1 0.02
21 57 0.97
22 1 0.02
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.39
Consensus pattern (21 bp):
TTACCAAAATTTTATAAAAAA
Found at i:8325281 original size:16 final size:17
Alignment explanation
Indices: 8325235--8325282 Score: 55
Period size: 16 Copynumber: 2.9 Consensus size: 17
8325225 ATCATTATTA
* *
8325235 TTATTATATAAAATTTT
1 TTATTAAATAAAAATTT
*
8325252 TTATTAAA-ATAAATTT
1 TTATTAAATAAAAATTT
8325268 TTA-TAAATAAAAATT
1 TTATTAAATAAAAATT
8325283 ACACGTGCAC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 4 0.15
16 15 0.58
17 7 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTATTAAATAAAAATTT
Found at i:8328997 original size:20 final size:21
Alignment explanation
Indices: 8328960--8328998 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8328950 CAGTGGATAG
*
8328960 ATTGAAGAGAGGGAATGAGGT
1 ATTGAAGAGAGAGAATGAGGT
8328981 ATTGAAGA-AGAGAATGAG
1 ATTGAAGAGAGAGAATGAG
8328999 TCCGGCTGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.38, T:0.18
Consensus pattern (21 bp):
ATTGAAGAGAGAGAATGAGGT
Found at i:8329107 original size:6 final size:6
Alignment explanation
Indices: 8329096--8329123 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
8329086 TCTTTGTTAT
8329096 ATTTCC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTT
8329124 GCCTTTTGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.00, T:0.54
Consensus pattern (6 bp):
ATTTCC
Found at i:8334537 original size:17 final size:17
Alignment explanation
Indices: 8334515--8334549 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8334505 TATATTATAA
8334515 TTTATATAAATTTAATT
1 TTTATATAAATTTAATT
* *
8334532 TTTATATTATTTTAATT
1 TTTATATAAATTTAATT
8334549 T
1 T
8334550 AATTTTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTATATAAATTTAATT
Found at i:8334541 original size:22 final size:22
Alignment explanation
Indices: 8334516--8334557 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8334506 ATATTATAAT
8334516 TTATATAAATTTAATTTTTATA
1 TTATATAAATTTAATTTTTATA
* *
8334538 TTATTTTAATTTAATTTTTA
1 TTATATAAATTTAATTTTTA
8334558 ATTTAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATATAAATTTAATTTTTATA
Found at i:8334557 original size:29 final size:29
Alignment explanation
Indices: 8334487--8334561 Score: 91
Period size: 29 Copynumber: 2.6 Consensus size: 29
8334477 ACTTTGTGAA
8334487 AATTTAAAATTTAATTTTTATATTATAATTT
1 AATTT-AAATTTAATTTTTATATTAT-ATTT
*
8334518 -ATATAAATTTAATTTTTATATTAT-TTT
1 AATTTAAATTTAATTTTTATATTATATTT
*
8334545 AATTTAATTTTTAATTT
1 AATTTAA-ATTTAATTT
8334562 AATTATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
27 3 0.08
28 5 0.13
29 28 0.72
30 3 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (29 bp):
AATTTAAATTTAATTTTTATATTATATTT
Found at i:8334942 original size:18 final size:19
Alignment explanation
Indices: 8334921--8334958 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
8334911 AATTTTTAAT
8334921 ATTTT-GAATTTTTTAGAA
1 ATTTTCGAATTTTTTAGAA
* *
8334939 ATTTTCTAGTTTTTTAGAA
1 ATTTTCGAATTTTTTAGAA
8334958 A
1 A
8334959 ATATCAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.55
Consensus pattern (19 bp):
ATTTTCGAATTTTTTAGAA
Found at i:8336250 original size:84 final size:81
Alignment explanation
Indices: 8336111--8336277 Score: 239
Period size: 84 Copynumber: 2.0 Consensus size: 81
8336101 CTAAAACCCC
* * *
8336111 TTAGTACTCTATCTTCTTTTAATATGATAAGAAGGTACATAAAATGATTATCTTGGATATTGTTA
1 TTAGTACTCTATCTTCTTTTAATACGAAAAGAAGGTACATAAAATGATTATCTTGGATATTATTA
8336176 TAACAAAATCTA-CTT
66 TAACAAAATCTATCTT
8336191 TTAGTACTCTATCTTCCTTTTAATACGAAAAGAATGG-ACATTAGAAAATGATTATCTTGGATAT
1 TTAGTACTCTATCTT-CTTTTAATACGAAAAGAA-GGTACA-T--AAAATGATTATCTTGGATAT
*
8336255 TATTGTAACAAAATCTATCTT
61 TATTATAACAAAATCTATCTT
8336276 TT
1 TT
8336278 TTCCTCTTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 7
0.88 0.05 0.08
Matches are distributed among these distances:
80 15 0.19
81 19 0.25
82 3 0.04
84 35 0.45
85 5 0.06
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.41
Consensus pattern (81 bp):
TTAGTACTCTATCTTCTTTTAATACGAAAAGAAGGTACATAAAATGATTATCTTGGATATTATTA
TAACAAAATCTATCTT
Found at i:8337259 original size:28 final size:29
Alignment explanation
Indices: 8337228--8337283 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
8337218 CTTACTAAGG
8337228 TCATGGTAGTT-AAACACTTCCCTAAAGC
1 TCATGGTAGTTAAAACACTTCCCTAAAGC
*
8337256 TCATGGTAGTTAAAACATTTCCCTAAAG
1 TCATGGTAGTTAAAACACTTCCCTAAAG
8337284 TTGAGTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.34, C:0.21, G:0.14, T:0.30
Consensus pattern (29 bp):
TCATGGTAGTTAAAACACTTCCCTAAAGC
Found at i:8344222 original size:25 final size:25
Alignment explanation
Indices: 8344188--8344237 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8344178 TGTTGTGAAG
8344188 AAGAATGTTTCAAAAGATTGCTTCT
1 AAGAATGTTTCAAAAGATTGCTTCT
*
8344213 AAGAATGTTTCAAAGGATTGCTTCT
1 AAGAATGTTTCAAAAGATTGCTTCT
8344238 TTCTCAGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (25 bp):
AAGAATGTTTCAAAAGATTGCTTCT
Found at i:8346451 original size:15 final size:15
Alignment explanation
Indices: 8346431--8346460 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8346421 AAAAAGTTTT
8346431 AAGTATTTTTTTGTG
1 AAGTATTTTTTTGTG
8346446 AAGTATTTTTTTGTG
1 AAGTATTTTTTTGTG
8346461 CCATATCGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.00, G:0.20, T:0.60
Consensus pattern (15 bp):
AAGTATTTTTTTGTG
Found at i:8349649 original size:41 final size:41
Alignment explanation
Indices: 8349593--8349672 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
8349583 TTGGCTGTGT
*
8349593 TAATAATATTCTAGTAATATTTTTATAATATTTTATATTGA
1 TAATAATATTCTAGTAATATTTTAATAATATTTTATATTGA
* *
8349634 TAATATTATTTTAGTAATATTTTAATAATATTTTATATT
1 TAATAATATTCTAGTAATATTTTAATAATATTTTATATT
8349673 AATTTAATAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.39, C:0.01, G:0.04, T:0.56
Consensus pattern (41 bp):
TAATAATATTCTAGTAATATTTTAATAATATTTTATATTGA
Found at i:8349668 original size:11 final size:11
Alignment explanation
Indices: 8349592--8349681 Score: 71
Period size: 11 Copynumber: 8.5 Consensus size: 11
8349582 TTTGGCTGTG
8349592 TTAATAATATT
1 TTAATAATATT
* *
8349603 CTAGTAATATT
1 TTAATAATATT
*
8349614 TTTATAATATT
1 TTAATAATATT
*
8349625 TT-AT-AT-TG
1 TTAATAATATT
* *
8349633 ATAATATTATT
1 TTAATAATATT
*
8349644 TTAGTAATATT
1 TTAATAATATT
8349655 TTAATAATATT
1 TTAATAATATT
* *
8349666 TT-ATATTAAT
1 TTAATAATATT
8349676 TTAATA
1 TTAATA
8349682 TTAATTTAAA
Statistics
Matches: 60, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
8 2 0.03
9 4 0.07
10 11 0.18
11 43 0.72
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (11 bp):
TTAATAATATT
Found at i:8349682 original size:11 final size:11
Alignment explanation
Indices: 8349634--8349690 Score: 53
Period size: 11 Copynumber: 5.3 Consensus size: 11
8349624 TTTATATTGA
*
8349634 TAATATTATTT
1 TAATATTAATT
* * *
8349645 TAGTAATATTT
1 TAATATTAATT
*
8349656 TAATAAT-ATT
1 TAATATTAATT
*
8349666 TTATATTAATT
1 TAATATTAATT
8349677 TAATATTAATT
1 TAATATTAATT
8349688 TAA
1 TAA
8349691 AAAATATTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
10 7 0.18
11 31 0.82
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (11 bp):
TAATATTAATT
Found at i:8349688 original size:22 final size:21
Alignment explanation
Indices: 8349621--8349689 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
8349611 ATTTTTATAA
*
8349621 TATTTTATATTGA--TAATAT
1 TATTTTATATTAATTTAATAT
* * *
8349640 TATTTTAGTAATATTTTAATAA
1 TATTTTA-TATTAATTTAATAT
8349662 TATTTTATATTAATTTAATAT
1 TATTTTATATTAATTTAATAT
*
8349683 TAATTTA
1 TATTTTA
8349690 AAAAATATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 7 0.18
20 3 0.08
21 17 0.44
22 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (21 bp):
TATTTTATATTAATTTAATAT
Found at i:8354134 original size:33 final size:33
Alignment explanation
Indices: 8354097--8354177 Score: 108
Period size: 33 Copynumber: 2.4 Consensus size: 33
8354087 ATTTTTTAGG
* * *
8354097 TTGATTTGATATTGATTTAAAGAATATTATATA
1 TTGATTTAATATTAATTTAAAGAATATTAGATA
*
8354130 TTGATTTAATATTAATTTAGAGAATATTAGATA
1 TTGATTTAATATTAATTTAAAGAATATTAGATA
*
8354163 TTGATTAAATGATTA
1 TTGATTTAAT-ATTA
8354178 TAGAAATTGA
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
33 38 0.90
34 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (33 bp):
TTGATTTAATATTAATTTAAAGAATATTAGATA
Found at i:8354186 original size:21 final size:21
Alignment explanation
Indices: 8354157--8354199 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8354147 TAGAGAATAT
* *
8354157 TAGATATTGATTAAATGATTA
1 TAGAAATTGATTAAATCATTA
*
8354178 TAGAAATTGATTTAATCATTA
1 TAGAAATTGATTAAATCATTA
8354199 T
1 T
8354200 TTTTTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.02, G:0.12, T:0.44
Consensus pattern (21 bp):
TAGAAATTGATTAAATCATTA
Found at i:8356520 original size:2 final size:2
Alignment explanation
Indices: 8356513--8356544 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
8356503 AGTCACATCG
8356513 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
8356545 AACAACACGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:8362746 original size:27 final size:27
Alignment explanation
Indices: 8362716--8362769 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
8362706 ATAAAAGTAA
*
8362716 ATTTTGATAAGTCTTGATATAATTTTG
1 ATTTTGATAACTCTTGATATAATTTTG
* *
8362743 ATTTTGATAACTTTTTATATAATTTTG
1 ATTTTGATAACTCTTGATATAATTTTG
8362770 GTAACTTTCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.56
Consensus pattern (27 bp):
ATTTTGATAACTCTTGATATAATTTTG
Found at i:8362769 original size:21 final size:21
Alignment explanation
Indices: 8362743--8362858 Score: 97
Period size: 21 Copynumber: 5.5 Consensus size: 21
8362733 TATAATTTTG
* *
8362743 ATTTTGATAACTTTTTATATA
1 ATTTTGGTAACTTTTGATATA
* *
8362764 ATTTTGGTAACTTTCGATATT
1 ATTTTGGTAACTTTTGATATA
* ** * *
8362785 AGTTTAATAACTTATAATATA
1 ATTTTGGTAACTTTTGATATA
** *
8362806 ATTTTGGTAACCATTGATAAA
1 ATTTTGGTAACTTTTGATATA
*
8362827 ATTTTGGTAACTTCTTGATGTA
1 ATTTTGGTAACTT-TTGATATA
*
8362849 ATTTTAGTAA
1 ATTTTGGTAA
8362859 TTAACCTTTT
Statistics
Matches: 70, Mismatches: 24, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
21 55 0.79
22 15 0.21
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (21 bp):
ATTTTGGTAACTTTTGATATA
Found at i:8363260 original size:22 final size:21
Alignment explanation
Indices: 8363235--8363356 Score: 91
Period size: 22 Copynumber: 5.6 Consensus size: 21
8363225 TAAACTGTTC
8363235 AATTATCAATAATTTACTACTA
1 AATTAT-AATAATTTACTACTA
* * *
8363257 AATTAATATTGATTTACAACTA
1 AATT-ATAATAATTTACTACTA
* * *
8363279 ATTTATAATGATTTACTGCTA
1 AATTATAATAATTTACTACTA
* * * *
8363300 AACTATAAATGATTTATTATTA
1 AATTAT-AATAATTTACTACTA
* *
8363322 AATTATTGATGATTTACTACTA
1 AATTA-TAATAATTTACTACTA
8363344 AATTATTAATAAT
1 AATTA-TAATAAT
8363357 GATTGATTTG
Statistics
Matches: 79, Mismatches: 18, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
21 18 0.23
22 58 0.73
23 3 0.04
ACGTcount: A:0.43, C:0.08, G:0.05, T:0.44
Consensus pattern (21 bp):
AATTATAATAATTTACTACTA
Found at i:8363461 original size:22 final size:23
Alignment explanation
Indices: 8363436--8363530 Score: 96
Period size: 22 Copynumber: 4.4 Consensus size: 23
8363426 AGATTAACTA
8363436 ATTTACTAT-TAAATTATCATTG
1 ATTTACTATCTAAATTATCATTG
* *
8363458 ATTTAC-AACTAAATTATTATTG
1 ATTTACTATCTAAATTATCATTG
*
8363480 ATTTACT-TCTAAGTTATCA---
1 ATTTACTATCTAAATTATCATTG
*
8363499 ATTTAC-ATCTAAATTATCAATG
1 ATTTACTATCTAAATTATCATTG
*
8363521 ATTTATTATC
1 ATTTACTATC
8363531 ATGTTATTAT
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
19 17 0.29
21 1 0.02
22 38 0.64
23 3 0.05
ACGTcount: A:0.37, C:0.12, G:0.04, T:0.47
Consensus pattern (23 bp):
ATTTACTATCTAAATTATCATTG
Found at i:8363851 original size:22 final size:21
Alignment explanation
Indices: 8363819--8363871 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8363809 TATGAATTAA
*
8363819 TTACTACTAAATCGAGACTAAT
1 TTACTATTAAAT-GAGACTAAT
* * *
8363841 TTACTATTAAATTATATTAAT
1 TTACTATTAAATGAGACTAAT
8363862 TTACTATTAA
1 TTACTATTAA
8363872 GTTATTATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 16 0.59
22 11 0.41
ACGTcount: A:0.42, C:0.11, G:0.04, T:0.43
Consensus pattern (21 bp):
TTACTATTAAATGAGACTAAT
Found at i:8363883 original size:22 final size:21
Alignment explanation
Indices: 8363837--8363898 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
8363827 AAATCGAGAC
8363837 TAATTTACTATTAAATTATAT
1 TAATTTACTATTAAATTATAT
*
8363858 TAATTTACTATTAAGTTATTAT
1 TAATTTACTATTAAATTA-TAT
* *
8363880 TAATTTATTATTACATTAT
1 TAATTTACTATTAAATTAT
8363899 GAATTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
21 18 0.50
22 18 0.50
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.55
Consensus pattern (21 bp):
TAATTTACTATTAAATTATAT
Found at i:8363898 original size:11 final size:11
Alignment explanation
Indices: 8363837--8363892 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
8363827 AAATCGAGAC
*
8363837 TAATTTACTAT
1 TAATTTATTAT
*
8363848 TAAATTA-TAT
1 TAATTTATTAT
*
8363858 TAATTTACTAT
1 TAATTTATTAT
*
8363869 TAAGTTATTAT
1 TAATTTATTAT
8363880 TAATTTATTAT
1 TAATTTATTAT
8363891 TA
1 TA
8363893 CATTATGAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
10 9 0.23
11 30 0.77
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.55
Consensus pattern (11 bp):
TAATTTATTAT
Found at i:8364269 original size:22 final size:21
Alignment explanation
Indices: 8364196--8364266 Score: 56
Period size: 21 Copynumber: 3.3 Consensus size: 21
8364186 TGATTGATAA
*
8364196 TTAAGTTATCAATTATTTA-TT
1 TTAA-TTATCAATGATTTACTT
* *
8364217 TCTAGATTATTAATGA-TTACTAC
1 T-TA-ATTATCAATGATTTACT-T
*
8364240 TAAATTATCAATGATTTACTT
1 TTAATTATCAATGATTTACTT
8364261 TTAATT
1 TTAATT
8364267 TATGATTGAT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
21 19 0.50
22 17 0.45
23 2 0.05
ACGTcount: A:0.35, C:0.08, G:0.06, T:0.51
Consensus pattern (21 bp):
TTAATTATCAATGATTTACTT
Found at i:8364613 original size:45 final size:43
Alignment explanation
Indices: 8364492--8364613 Score: 101
Period size: 45 Copynumber: 2.7 Consensus size: 43
8364482 TACTGTTAAA
*
8364492 TTATTAATTTATTACTAAATTATCAAT-GATTTATTATTATATTTT
1 TTATT-ATTTATTA-TAAATTATC-ATCGATTTACTATTATATTTT
*
8364537 TTATATATTTCTATTAT--GTTATCATTC-ATTTACTACTTA-ATTTTT
1 TTAT-TA-TT-TATTATAAATTATCA-TCGATTTACTA-TTATA-TTTT
8364582 TTATTATTTATTATAAAATTATCATCGATTTA
1 TTATTATTTATTAT-AAATTATCATCGATTTA
8364614 TCACTAAATT
Statistics
Matches: 63, Mismatches: 3, Indels: 22
0.72 0.03 0.25
Matches are distributed among these distances:
42 6 0.10
43 3 0.05
44 18 0.29
45 27 0.43
46 4 0.06
47 5 0.08
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.57
Consensus pattern (43 bp):
TTATTATTTATTATAAATTATCATCGATTTACTATTATATTTT
Found at i:8364661 original size:39 final size:38
Alignment explanation
Indices: 8364618--8364696 Score: 95
Period size: 39 Copynumber: 2.1 Consensus size: 38
8364608 GATTTATCAC
* *
8364618 TAAATTATATATAATTCATTACCAAGTTATTATTGATAT
1 TAAATTATACATAATTCATTACCAAATTATTATT-ATAT
* * **
8364657 TAAATTATGCATAATTTATTATTAAATTATTATTATAT
1 TAAATTATACATAATTCATTACCAAATTATTATTATAT
8364695 TA
1 TA
8364697 TCTATGATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
38 6 0.18
39 28 0.82
ACGTcount: A:0.42, C:0.05, G:0.04, T:0.49
Consensus pattern (38 bp):
TAAATTATACATAATTCATTACCAAATTATTATTATAT
Found at i:8364774 original size:22 final size:22
Alignment explanation
Indices: 8364749--8364805 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
8364739 TCAATAACTA
8364749 ACTACTAAATTATCAATT-ATTT
1 ACTACTAAATTATC-ATTGATTT
* *
8364771 ACTAGTAATTTATCATTGATTT
1 ACTACTAAATTATCATTGATTT
* *
8364793 TCTATTAAATTAT
1 ACTACTAAATTAT
8364806 TTATGATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 3 0.10
22 26 0.90
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.49
Consensus pattern (22 bp):
ACTACTAAATTATCATTGATTT
Found at i:8364898 original size:22 final size:22
Alignment explanation
Indices: 8364718--8364820 Score: 50
Period size: 22 Copynumber: 4.7 Consensus size: 22
8364708 CTCAAAGTTC
*
8364718 TATTGATTTACTTTTAAATT-T
1 TATTGATTTACTATTAAATTAT
* * * * *
8364739 TCAATAACTAACTACTAAATTAT
1 T-ATTGATTTACTATTAAATTAT
* * *
8364762 CAATT-ATTTACTAGTAATTTAT
1 -TATTGATTTACTATTAAATTAT
* *
8364784 CATTGATTTTCTATTAAATTAT
1 TATTGATTTACTATTAAATTAT
*
8364806 T-TATGATTTTCTATT
1 TAT-TGATTTACTATT
8364821 GTCAATTAAT
Statistics
Matches: 60, Mismatches: 17, Indels: 9
0.70 0.20 0.10
Matches are distributed among these distances:
21 5 0.08
22 52 0.87
23 3 0.05
ACGTcount: A:0.34, C:0.10, G:0.04, T:0.52
Consensus pattern (22 bp):
TATTGATTTACTATTAAATTAT
Found at i:8365096 original size:22 final size:22
Alignment explanation
Indices: 8365058--8365138 Score: 78
Period size: 22 Copynumber: 3.7 Consensus size: 22
8365048 ATTATTACTA
*
8365058 ATTTACTA-AAAAGTTATAAATT-
1 ATTTACTATTAAA-TTAT-AATTC
*
8365080 ATTTACTATTAAATTATCATTC
1 ATTTACTATTAAATTATAATTC
* *
8365102 ATTTACTATTAAGTTATAATTG
1 ATTTACTATTAAATTATAATTC
*
8365124 A-TTACTACTAAATTA
1 ATTTACTATTAAATTA
8365139 GTGATAATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
21 15 0.30
22 32 0.64
23 3 0.06
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.46
Consensus pattern (22 bp):
ATTTACTATTAAATTATAATTC
Found at i:8365130 original size:21 final size:21
Alignment explanation
Indices: 8365068--8365169 Score: 84
Period size: 21 Copynumber: 4.8 Consensus size: 21
8365058 ATTTACTAAA
8365068 AAGTTATAAATT-ATTTACTATT
1 AAGTTAT-AATTGA-TTACTATT
* * *
8365090 AAATTATCATTCATTTACTATT
1 AAGTTATAATTGA-TTACTATT
*
8365112 AAGTTATAATTGATTACTACT
1 AAGTTATAATTGATTACTATT
* * *
8365133 AAATTAGTGA-TAATTACTATT
1 AAGTTA-TAATTGATTACTATT
8365154 AAGTTAT-ATTGATTAC
1 AAGTTATAATTGATTAC
8365170 ATTTAAATTT
Statistics
Matches: 65, Mismatches: 12, Indels: 8
0.76 0.14 0.09
Matches are distributed among these distances:
19 1 0.02
20 7 0.11
21 29 0.45
22 28 0.43
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.46
Consensus pattern (21 bp):
AAGTTATAATTGATTACTATT
Found at i:8365835 original size:14 final size:15
Alignment explanation
Indices: 8365818--8365846 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8365808 TTTTTTTTAA
8365818 TTATTACT-TCATTC
1 TTATTACTATCATTC
8365832 TTATTACTATCATTC
1 TTATTACTATCATTC
8365847 AAAATAACTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.24, C:0.21, G:0.00, T:0.55
Consensus pattern (15 bp):
TTATTACTATCATTC
Found at i:8367530 original size:17 final size:16
Alignment explanation
Indices: 8367482--8367530 Score: 57
Period size: 17 Copynumber: 3.1 Consensus size: 16
8367472 AAATCTTAAT
8367482 TTTTTATT-TAAAAAA
1 TTTTTATTATAAAAAA
*
8367497 -TTTTATTATACATAAA
1 TTTTTATTATA-AAAAA
8367513 TTTTTATTATATAAAAA
1 TTTTTATTATA-AAAAA
8367530 T
1 T
8367531 ATTAAAATAC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 7 0.25
15 2 0.07
16 4 0.14
17 15 0.54
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (16 bp):
TTTTTATTATAAAAAA
Found at i:8367541 original size:33 final size:31
Alignment explanation
Indices: 8367482--8367544 Score: 81
Period size: 33 Copynumber: 2.0 Consensus size: 31
8367472 AAATCTTAAT
* **
8367482 TTTTTATTTAAAAAATTTTATTATACATAAA
1 TTTTTATTTAAAAAATATTAAAATACATAAA
8367513 TTTTTATTATATAAAAATATTAAAATACATAA
1 TTTTTATT-TA-AAAAATATTAAAATACATAA
8367545 CTTTAAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 8 0.30
32 2 0.07
33 17 0.63
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (31 bp):
TTTTTATTTAAAAAATATTAAAATACATAAA
Found at i:8368989 original size:2 final size:2
Alignment explanation
Indices: 8368982--8369023 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
8368972 TTCGTATTTT
* * *
8368982 TA TA TA TA GA TA -A TA TA TA TA TG TA TC TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8369023 T
1 T
8369024 TGAGTACAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8377388 original size:15 final size:15
Alignment explanation
Indices: 8377368--8377401 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8377358 TTTCTCTTCA
*
8377368 TATTTTTTAA-AAAT
1 TATTTTTAAATAAAT
8377382 TATTTTTAAATAAAT
1 TATTTTTAAATAAAT
8377397 TATTT
1 TATTT
8377402 AATTACTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (15 bp):
TATTTTTAAATAAAT
Found at i:8378709 original size:2 final size:2
Alignment explanation
Indices: 8378702--8378741 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
8378692 TAAACTTGTT
*
8378702 TA TA TA TA T- TG T- TA TA TA -A TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8378741 T
1 T
8378742 TAGATTTATA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
1 3 0.09
2 32 0.91
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (2 bp):
TA
Found at i:8380095 original size:18 final size:19
Alignment explanation
Indices: 8380067--8380102 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
8380057 TTAATAAAAA
8380067 TTTTTACTAAAATTTCTTT
1 TTTTTACTAAAATTTCTTT
*
8380086 TTTTTA-TAAATTTTCTT
1 TTTTTACTAAAATTTCTT
8380103 AAAATTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.25, C:0.08, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTTTACTAAAATTTCTTT
Found at i:8380846 original size:16 final size:15
Alignment explanation
Indices: 8380815--8380850 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
8380805 AAATAGATGT
8380815 AATAATAAGCAAATA
1 AATAATAAGCAAATA
*
8380830 AATAATCAAGTAAATA
1 AATAAT-AAGCAAATA
8380846 AATAA
1 AATAA
8380851 AAACAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.32
16 13 0.68
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.22
Consensus pattern (15 bp):
AATAATAAGCAAATA
Found at i:8381263 original size:15 final size:14
Alignment explanation
Indices: 8381222--8381259 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
8381212 CCTTCAATTA
8381222 TTTTTATTTTTCT-
1 TTTTTATTTTTCTC
*
8381235 TTTTTATTCTTCTC
1 TTTTTATTTTTCTC
8381249 TTTTTATTTTT
1 TTTTTATTTTT
8381260 TCTCCCTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTTTATTTTTCTC
Found at i:8384104 original size:2 final size:2
Alignment explanation
Indices: 8384097--8384128 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
8384087 GTAGTCACAT
*
8384097 TA TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8384129 ACGCCTCTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:8386592 original size:20 final size:20
Alignment explanation
Indices: 8386539--8386592 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
8386529 ATAATTTTTT
8386539 TTTTTTGGTTTAAGCAGTTAA
1 TTTTTT-GTTTAAGCAGTTAA
*
8386560 TTTTTTGTCTTAAGTAGTTAA
1 TTTTTTGT-TTAAGCAGTTAA
8386581 TTTTTTGTTTAA
1 TTTTTTGTTTAA
8386593 TAGGCATGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.22, C:0.04, G:0.15, T:0.59
Consensus pattern (20 bp):
TTTTTTGTTTAAGCAGTTAA
Found at i:8387339 original size:13 final size:14
Alignment explanation
Indices: 8387309--8387341 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8387299 ATATTTAAAT
8387309 ATTTATAATATCTA
1 ATTTATAATATCTA
*
8387323 ATTTATAA-ATTTA
1 ATTTATAATATCTA
8387336 ATTTAT
1 ATTTAT
8387342 TTTTAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTATAATATCTA
Found at i:8390626 original size:24 final size:24
Alignment explanation
Indices: 8390553--8390626 Score: 71
Period size: 27 Copynumber: 3.0 Consensus size: 24
8390543 ATATATAAAT
8390553 ATAAAA-TAAAAAATAATATAATTTA
1 ATAAAATTAAAAAAT-ATAT-ATTTA
**
8390578 A-AATTTTAATAATAATTATATATTTA
1 ATAAAATTAA-AA-AA-TATATATTTA
8390604 ATAAAATTAAAAAATATATATTT
1 ATAAAATTAAAAAATATATATTT
8390627 TATTTTTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 11
0.73 0.07 0.20
Matches are distributed among these distances:
24 11 0.28
25 6 0.15
26 10 0.25
27 12 0.30
28 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (24 bp):
ATAAAATTAAAAAATATATATTTA
Found at i:8393675 original size:23 final size:23
Alignment explanation
Indices: 8393648--8393693 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8393638 ACTCTTGGGG
*
8393648 TAATGTTAT-TTCGTTCTCTTTCT
1 TAATGCTATGTTCGTT-TCTTTCT
8393671 TAATGCTATGTTCGTTTCTTTCT
1 TAATGCTATGTTCGTTTCTTTCT
8393694 GACTAAAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 15 0.71
24 6 0.29
ACGTcount: A:0.13, C:0.17, G:0.11, T:0.59
Consensus pattern (23 bp):
TAATGCTATGTTCGTTTCTTTCT
Found at i:8394381 original size:22 final size:22
Alignment explanation
Indices: 8394328--8394382 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
8394318 CATTGATTAC
* *
8394328 ATGAGGATCAATTTTAAGTGTA
1 ATGATGATCAATTTTAAGTATA
*
8394350 ATGATCATCAATTTTAAGTATA
1 ATGATGATCAATTTTAAGTATA
8394372 GATG-TGATCAA
1 -ATGATGATCAA
8394383 GTCAGAGCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 25 0.89
23 3 0.11
ACGTcount: A:0.38, C:0.07, G:0.18, T:0.36
Consensus pattern (22 bp):
ATGATGATCAATTTTAAGTATA
Found at i:8400093 original size:42 final size:42
Alignment explanation
Indices: 8400046--8400130 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
8400036 TTTAAAGTTA
*
8400046 GTTTTTCTTTTAACTTTGTTGCATGTTGTATAAAATAATTTT
1 GTTTTTCTTTTAACTTTGTTGCATGCTGTATAAAATAATTTT
8400088 GTTTTTCTTTTAACTTTGTTGCATGCTGTATAAAATAATTTT
1 GTTTTTCTTTTAACTTTGTTGCATGCTGTATAAAATAATTTT
8400130 G
1 G
8400131 AAATTGATAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.08, G:0.13, T:0.55
Consensus pattern (42 bp):
GTTTTTCTTTTAACTTTGTTGCATGCTGTATAAAATAATTTT
Found at i:8402191 original size:136 final size:136
Alignment explanation
Indices: 8401846--8402196 Score: 365
Period size: 138 Copynumber: 2.6 Consensus size: 136
8401836 AGGAAAGTAC
* * * * * *
8401846 AAAATTACTAAAATA-TCCTTTAAAAGATATTTTCATAATTTGG-CTCTTCTGAGCTCAGATTTT
1 AAAATTACTAAAATACCCCTAT-AAGGGTATTTTCGTAATTTGGCCT-TTCTGAGCTTAGATTTT
* * *
8401909 CATGAAACTTTTTATATCTTAATTTCATAATTTTTTTTTGGTGCATTTGAAATCACGGCTATACC
64 CATGAAACTTTTTAAATCTTAATTTCATAA--TTTTTTTAGTGCATTTGAAATCACAGCTATACC
8401974 TGAAAAGTGT
127 TGAAAAGTGT
* * * ** *
8401984 GAAATAACTAAAATACCCTTATAAGGGTATTTTCGTAATTTATCC-TTCTTGAGCTCT-GATTTC
1 AAAATTACTAAAATACCCCTATAAGGGTATTTTCGTAATTTGGCCTTTC-TGAGCT-TAGATTTT
*
8402047 CATGAAACTTTTTAAATCTTAATTTCATAA-TTTTTTAGTGCATTTTAAATCACAGC-ATTACCC
64 CATGAAACTTTTTAAATCTTAATTTCATAATTTTTTTAGTGCATTTGAAATCACAGCTA-TA-CC
**
8402110 T-AATGGGTGT
127 TGAA-AAGTGT
* * * *
8402120 AAAATTACTAAAATACCCCTATAAGGGTATTTTTGTAATTTGGCCTTTCTAAGCTTAAATTTTTA
1 AAAATTACTAAAATACCCCTATAAGGGTATTTTCGTAATTTGGCCTTTCTGAGCTTAGATTTTCA
*
8402185 TAAAACTTTTTA
66 TGAAACTTTTTA
8402197 GATATCAATT
Statistics
Matches: 175, Mismatches: 29, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
134 1 0.01
135 28 0.16
136 67 0.38
137 6 0.03
138 69 0.39
139 4 0.02
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (136 bp):
AAAATTACTAAAATACCCCTATAAGGGTATTTTCGTAATTTGGCCTTTCTGAGCTTAGATTTTCA
TGAAACTTTTTAAATCTTAATTTCATAATTTTTTTAGTGCATTTGAAATCACAGCTATACCTGAA
AAGTGT
Found at i:8407952 original size:23 final size:24
Alignment explanation
Indices: 8407911--8407985 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
8407901 AATATTTTAA
* *
8407911 TTTTAAAAATCATATTTTTTATTT
1 TTTTAAAAATCAGATTTTTAATTT
*
8407935 TTTTAAAAATTAGA-TTTTAA-TT
1 TTTTAAAAATCAGATTTTTAATTT
*
8407957 TTTTAAACATTCA-ATATTTTGAATTT
1 TTTTAAA-AATCAGAT-TTTT-AATTT
8407983 TTT
1 TTT
8407986 AGGAACTTTT
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
22 10 0.24
23 8 0.20
24 16 0.39
25 2 0.05
26 5 0.12
ACGTcount: A:0.35, C:0.04, G:0.03, T:0.59
Consensus pattern (24 bp):
TTTTAAAAATCAGATTTTTAATTT
Found at i:8407975 original size:24 final size:23
Alignment explanation
Indices: 8407901--8407986 Score: 72
Period size: 22 Copynumber: 3.7 Consensus size: 23
8407891 TATAATTTTA
*
8407901 AATATTTTAA--TTTTAAAAATC
1 AATATTTTAATTTTTTAAAATTC
* *
8407922 ATATTTTTTATTTTTTTAAAAATT-
1 A-ATATTTTAATTTTTT-AAAATTC
*
8407946 -AGATTTTAATTTTTTAAACATTC
1 AATATTTTAATTTTTTAAA-ATTC
8407969 AATATTTTGAATTTTTTA
1 AATATTTT-AATTTTTTA
8407987 GGAACTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 12
0.72 0.10 0.17
Matches are distributed among these distances:
21 4 0.08
22 22 0.44
24 10 0.20
25 14 0.28
ACGTcount: A:0.37, C:0.03, G:0.02, T:0.57
Consensus pattern (23 bp):
AATATTTTAATTTTTTAAAATTC
Found at i:8408531 original size:18 final size:19
Alignment explanation
Indices: 8408502--8408551 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
8408492 TAAATATTTT
**
8408502 GTTTAAATAAAATATTAAAA
1 GTTTAAA-AAAATACAAAAA
*
8408522 -TTTAAAAAAACACAAAAA
1 GTTTAAAAAAATACAAAAA
8408540 GTTTAAAAAAAT
1 GTTTAAAAAAAT
8408552 GAAATTAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
18 9 0.36
19 16 0.64
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.28
Consensus pattern (19 bp):
GTTTAAAAAAATACAAAAA
Found at i:8409359 original size:26 final size:28
Alignment explanation
Indices: 8409298--8409361 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
8409288 TCAAATCAAA
* *
8409298 ATAATACAAAGATTAAATTTGTATGAATT
1 ATAATATAAAGATTAAATTTGCA-GAATT
8409327 ATAATATAAAGATTAAATTT-CA-AATT
1 ATAATATAAAGATTAAATTTGCAGAATT
*
8409353 TTAATATAA
1 ATAATATAA
8409362 TATAGATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 12 0.38
28 1 0.03
29 19 0.59
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (28 bp):
ATAATATAAAGATTAAATTTGCAGAATT
Found at i:8412176 original size:34 final size:34
Alignment explanation
Indices: 8412131--8412200 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
8412121 AAGAAGAAAG
* *
8412131 GTAAGCATGTTAACTTTGTAGATATTATTGAAGT
1 GTAAGCATGTTAACTTTGCAGATACTATTGAAGT
* *
8412165 GTAAGCGTGTTAGCTTTGCAGATACTATTGAAGT
1 GTAAGCATGTTAACTTTGCAGATACTATTGAAGT
8412199 GT
1 GT
8412201 TTAGAGATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.39
Consensus pattern (34 bp):
GTAAGCATGTTAACTTTGCAGATACTATTGAAGT
Found at i:8413948 original size:16 final size:16
Alignment explanation
Indices: 8413900--8413952 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
8413890 CTTAACACAA
8413900 TTTTTTGAAAATAAA-
1 TTTTTTGAAAATAAAT
**
8413915 TTTTAGGAAATTATAAAT
1 TTTTTTGAAA--ATAAAT
8413933 TTTTTTGAAAATAAAT
1 TTTTTTGAAAATAAAT
8413949 TTTT
1 TTTT
8413953 GAAAAATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 8 0.26
16 10 0.32
17 5 0.16
18 8 0.26
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.51
Consensus pattern (16 bp):
TTTTTTGAAAATAAAT
Found at i:8413960 original size:34 final size:33
Alignment explanation
Indices: 8413900--8414013 Score: 140
Period size: 34 Copynumber: 3.4 Consensus size: 33
8413890 CTTAACACAA
* *
8413900 TTTTTTGAAAATAAATTTTAGGAAATTATAAAT
1 TTTTTTGAAAATAAATTTTTGAAAATTATAAAT
8413933 TTTTTTGAAAATAAATTTTTGAAAAATTATATAA-
1 TTTTTTGAAAATAAATTTTTG-AAAATTATA-AAT
* *
8413967 TTTTTCGAAAATAAAATTTTTGAATATTATAAACT
1 TTTTTTGAAAAT-AAATTTTTGAAAATTATAAA-T
*
8414002 TTTTTGGAAAAT
1 TTTTTTGAAAAT
8414014 TTTTTTTGAG
Statistics
Matches: 71, Mismatches: 5, Indels: 8
0.85 0.06 0.10
Matches are distributed among these distances:
33 22 0.31
34 27 0.38
35 22 0.31
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (33 bp):
TTTTTTGAAAATAAATTTTTGAAAATTATAAAT
Found at i:8414675 original size:21 final size:23
Alignment explanation
Indices: 8414651--8414709 Score: 68
Period size: 25 Copynumber: 2.6 Consensus size: 23
8414641 TAAATGACAC
8414651 ATAAGATAATTTTTTTAA-A-AA
1 ATAAGATAATTTTTTTAATATAA
*
8414672 ATAAAATAATTTCTTTTAATTATAA
1 ATAAGATAATTT-TTTTAA-TATAA
*
8414697 ATTAGATAATTTT
1 ATAAGATAATTTT
8414710 AAATTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
21 11 0.35
22 6 0.19
24 2 0.06
25 12 0.39
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.47
Consensus pattern (23 bp):
ATAAGATAATTTTTTTAATATAA
Found at i:8415046 original size:30 final size:30
Alignment explanation
Indices: 8414975--8415047 Score: 76
Period size: 30 Copynumber: 2.5 Consensus size: 30
8414965 ACAATTATCT
8414975 TTTTAAAAAA-TTTACGTAAGAGATTAAAA
1 TTTTAAAAAATTTTACGTAAGAGATTAAAA
* * * * ** *
8415004 ATTCAAACAATTTTATGTAAGATTTTGAAA
1 TTTTAAAAAATTTTACGTAAGAGATTAAAA
8415034 TTTTAAAAAATTTT
1 TTTTAAAAAATTTT
8415048 CATCTTAAAT
Statistics
Matches: 33, Mismatches: 10, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.47, C:0.04, G:0.08, T:0.41
Consensus pattern (30 bp):
TTTTAAAAAATTTTACGTAAGAGATTAAAA
Found at i:8415429 original size:13 final size:13
Alignment explanation
Indices: 8415399--8415432 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
8415389 CTTATGAAAA
*
8415399 ATATTTTTTTCAT
1 ATATTTTTTTCAC
*
8415412 TTATTTTTTTCAC
1 ATATTTTTTTCAC
8415425 ATATTTTT
1 ATATTTTT
8415433 CATCTTTTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.71
Consensus pattern (13 bp):
ATATTTTTTTCAC
Found at i:8425464 original size:161 final size:162
Alignment explanation
Indices: 8425198--8425576 Score: 399
Period size: 161 Copynumber: 2.3 Consensus size: 162
8425188 AGAAGACTCT
* * * * * * * *
8425198 GATATCACCATTAAG-AGATTTTAACGAAATTCAAACTTGAATACTTAGATATTACCATCAAGTG
1 GATATCATCATTGAGAAAATTTTAATGATATTCAAACATGAATACTTGGATATCACCATCAAGTG
* * *
8425262 ATGTTAAAAAAGGCTCAGACATCACCACTAAAAGATTTTAATGATATTCAAAT-TTAGATATTCA
66 ATGTTAAAAAA-GCTCAAACATCACCACTAAAAGATTTTAATGATATTCAAATATGA-ATACTCA
* * *
8425326 AATATCACCATCGAGTGATTTGT-AAAAGGTT-G
129 AATATCACCATCAAATAATTTGTAAAAAGGTTCG
* *
8425358 GATATCATCATTGAGAAAATTTTAATGATATTCAAACATGAATACTTGGATATCATCATCGAGTG
1 GATATCATCATTGAGAAAATTTTAATGATATTCAAACATGAATACTTGGATATCACCATCAAGTG
* * ** *
8425423 ATTTTGAAAAAA-CTCAAATATCACCACTGAAAATTTTTTAATGATATTCAAATATGAATACTCG
66 ATGTT-AAAAAAGCTCAAACATCACCACT-AAAAGATTTTAATGATATTCAAATATGAATACTCA
* * *
8425487 GATATCACCATTAAATAATTTTTAAAAAGGTTCG
129 AATATCACCATCAAATAATTTGTAAAAAGGTTCG
* * * * ** * *
8425521 GATATCATCGTCGAAAAAATTTTAATGATATTTAAATGTAAATACTCGGATATCAC
1 GATATCATCATTGAGAAAATTTTAATGATATTCAAACATGAATACTTGGATATCAC
8425577 ACCAAGTAAG
Statistics
Matches: 180, Mismatches: 33, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
160 27 0.15
161 89 0.49
162 16 0.09
163 48 0.27
ACGTcount: A:0.41, C:0.13, G:0.13, T:0.33
Consensus pattern (162 bp):
GATATCATCATTGAGAAAATTTTAATGATATTCAAACATGAATACTTGGATATCACCATCAAGTG
ATGTTAAAAAAGCTCAAACATCACCACTAAAAGATTTTAATGATATTCAAATATGAATACTCAAA
TATCACCATCAAATAATTTGTAAAAAGGTTCG
Found at i:8425473 original size:81 final size:80
Alignment explanation
Indices: 8425193--8425497 Score: 253
Period size: 81 Copynumber: 3.8 Consensus size: 80
8425183 ATCGAAGAAG
* * * * * * *
8425193 ACTCTGATATCACCA-TTAAGAGATTTTAACGAAATTCAAACTTGAATACTTAGATATTACCATC
1 ACTCAGATATCACCACTGAA-AAATTTTAATGATATTCAAACATGAATACTTAGATATCACCATC
* *
8425257 AAGTGATGTT-AAAAA
65 GAGTGATTTTGAAAAA
* * * *
8425272 AGGCTCAGACATCACCACT-AAAAGATTTTAATGATATTCAAA-TTTAGATA-TTCAAATATCAC
1 A--CTCAGATATCACCACTGAAAA-ATTTTAATGATATTCAAACATGA-ATACTT-AGATATCAC
*
8425334 CATCGAGTGA-TTTGTAAAA
61 CATCGAGTGATTTTGAAAAA
** ** * * * *
8425353 GGTTGGATATCATCATTGAGAAAATTTTAATGATATTCAAACATGAATACTTGGATATCATCATC
1 ACTCAGATATCACCACTGA-AAAATTTTAATGATATTCAAACATGAATACTTAGATATCACCATC
8425418 GAGTGATTTTGAAAAA
65 GAGTGATTTTGAAAAA
* * * **
8425434 ACTCAAATATCACCACTGAAAATTTTTTAATGATATTCAAATATGAATACTCGGATATCACCAT
1 ACTCAGATATCACCACTGAAAA-ATTTTAATGATATTCAAACATGAATACTTAGATATCACCAT
8425498 TAAATAATTT
Statistics
Matches: 178, Mismatches: 35, Indels: 24
0.75 0.15 0.10
Matches are distributed among these distances:
79 11 0.06
80 49 0.28
81 117 0.66
82 1 0.01
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.32
Consensus pattern (80 bp):
ACTCAGATATCACCACTGAAAAATTTTAATGATATTCAAACATGAATACTTAGATATCACCATCG
AGTGATTTTGAAAAA
Found at i:8425508 original size:81 final size:82
Alignment explanation
Indices: 8425373--8425576 Score: 214
Period size: 81 Copynumber: 2.5 Consensus size: 82
8425363 CATCATTGAG
* * * * * *
8425373 AAAATTTTAATGATATTCAAACATGAATACTTGGATATCATCATCGAGTGATTTTGAAAAA-ACT
1 AAAATTTTAATGATATTCAAATATGAATACTCGGATATCACCATCAAATAATTTTGAAAAAGACT
8425437 CAAATATCACCACT-GAA
66 CAAATATCACC-CTCGAA
** * * **
8425454 AATTTTTTAATGATATTCAAATATGAATACTCGGATATCACCATTAAATAATTTTTAAAAAGGTT
1 AAAATTTTAATGATATTCAAATATGAATACTCGGATATCACCATCAAATAATTTTGAAAAAGACT
** * *
8425519 CGGATATCATCGTCGAA
66 CAAATATCACCCTCGAA
* * *
8425536 AAAATTTTAATGATATTTAAATGTAAATACTCGGATATCAC
1 AAAATTTTAATGATATTCAAATATGAATACTCGGATATCAC
8425577 ACCAAGTAAG
Statistics
Matches: 100, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
81 52 0.52
82 48 0.48
ACGTcount: A:0.42, C:0.13, G:0.11, T:0.34
Consensus pattern (82 bp):
AAAATTTTAATGATATTCAAATATGAATACTCGGATATCACCATCAAATAATTTTGAAAAAGACT
CAAATATCACCCTCGAA
Found at i:8425605 original size:36 final size:36
Alignment explanation
Indices: 8425565--8425635 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
8425555 AATGTAAATA
8425565 CTCGGATATCA-CACCAAGTAAGT-TTTAATGAAAAAG
1 CTCGGATATCATCACCAA-TAAGTATTTAAT-AAAAAG
*
8425601 CTCGGATATCATCACCAATAATTATTTAATAAAAA
1 CTCGGATATCATCACCAATAAGTATTTAATAAAAA
8425636 TTCTCACCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
36 20 0.62
37 12 0.38
ACGTcount: A:0.44, C:0.17, G:0.11, T:0.28
Consensus pattern (36 bp):
CTCGGATATCATCACCAATAAGTATTTAATAAAAAG
Found at i:8428232 original size:14 final size:13
Alignment explanation
Indices: 8428213--8428242 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
8428203 CATTTTTTTC
8428213 TTTTTTCTTTATGT
1 TTTTTTCTTT-TGT
8428227 TTTTTTCTTTTGT
1 TTTTTTCTTTTGT
8428240 TTT
1 TTT
8428243 CATATGCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.38
14 10 0.62
ACGTcount: A:0.03, C:0.07, G:0.07, T:0.83
Consensus pattern (13 bp):
TTTTTTCTTTTGT
Found at i:8432801 original size:15 final size:15
Alignment explanation
Indices: 8432783--8432815 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
8432773 TTTCAACATT
8432783 TTTATTTTTTATT-TA
1 TTTA-TTTTTATTATA
8432798 TTTATTTTTATTATA
1 TTTATTTTTATTATA
8432813 TTT
1 TTT
8432816 TGTTTCATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTATTTTTATTATA
Found at i:8432948 original size:19 final size:18
Alignment explanation
Indices: 8432924--8432982 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
8432914 TTTTAAACAT
8432924 AAATAAATGAA-TAAAAATA
1 AAATAAAT-AACT-AAAATA
8432943 AAATAAATAACTAAAATA
1 AAATAAATAACTAAAATA
*
8432961 ATAATAAAAAAGCATAAAATA
1 A-AATAAATAA-C-TAAAATA
8432982 A
1 A
8432983 TTAAAAAAAC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
18 9 0.26
19 17 0.49
20 1 0.03
21 8 0.23
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.20
Consensus pattern (18 bp):
AAATAAATAACTAAAATA
Found at i:8433087 original size:21 final size:21
Alignment explanation
Indices: 8433044--8433088 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
8433034 GTTTGATTTG
*
8433044 TCTGGATAGATTTTCTAATGA
1 TCTGGATAGATTTTCTAACGA
*
8433065 TCTGGA-ATGATTTTCTAGCGA
1 TCTGGATA-GATTTTCTAACGA
8433086 TCT
1 TCT
8433089 AGAACGGTTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.42
Consensus pattern (21 bp):
TCTGGATAGATTTTCTAACGA
Found at i:8434530 original size:18 final size:20
Alignment explanation
Indices: 8434495--8434533 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
8434485 AAAATCGAAT
8434495 TAATTTAGAATACGAAATTAA
1 TAATTTAGAATAC-AAATTAA
8434516 TAATTTAG-ATA-AAATTAA
1 TAATTTAGAATACAAATTAA
8434534 ATGTTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
20 3 0.17
21 8 0.44
ACGTcount: A:0.54, C:0.03, G:0.08, T:0.36
Consensus pattern (20 bp):
TAATTTAGAATACAAATTAA
Found at i:8435767 original size:21 final size:22
Alignment explanation
Indices: 8435717--8435767 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
8435707 AAATTATAAA
8435717 AAATTAAATATTTATTAAATATG
1 AAATT-AATATTTATTAAATATG
*
8435740 AAA-TAATA-TTATTTTAATAT-
1 AAATTAATATTTA-TTAAATATG
8435760 AAATTAAT
1 AAATTAAT
8435768 CCTATAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
20 6 0.24
21 15 0.60
22 1 0.04
23 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
AAATTAATATTTATTAAATATG
Done.