Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 39 of 133
Found at i:8707435 original size:2 final size:2
Alignment explanation
Indices: 8707430--8707460 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8707420 TGTGTGTGTC
*
8707430 TA TA TA GA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
8707461 TAGTGTTAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
TA
Found at i:8707724 original size:16 final size:17
Alignment explanation
Indices: 8707701--8707736 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8707691 TAATTTAAAT
* *
8707701 GAATTTTTTTATTATTA
1 GAATTTTTCTATAATTA
8707718 GAATTTTTCTATAATTA
1 GAATTTTTCTATAATTA
8707735 GA
1 GA
8707737 CTAAAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (17 bp):
GAATTTTTCTATAATTA
Found at i:8711902 original size:20 final size:18
Alignment explanation
Indices: 8711866--8712001 Score: 54
Period size: 17 Copynumber: 7.6 Consensus size: 18
8711856 CTTCTTTTTT
*
8711866 TTAAATATAAATAATAATA
1 TTAAA-ATAAATAATAAAA
8711885 TTAAAATAAATGAGATAAAA
1 TTAAAATAAAT-A-ATAAAA
* *
8711905 TAAAAATAAA-GATAAGAA
1 TTAAAATAAATAATAA-AA
8711923 -TAAAGAT-AA-AATAAAA
1 TTAAA-ATAAATAATAAAA
* *
8711939 ATAAAGATAAA-AGTAAAA
1 TTAAA-ATAAATAATAAAA
* *
8711957 TAAGAAATGAAT-A-AAAA
1 TTA-AAATAAATAATAAAA
* *
8711974 TAAAGAATAAA-GATAAAA
1 TTAA-AATAAATAATAAAA
*
8711992 TAAAAATAAA
1 TTAAAATAAA
8712002 GATAAATACA
Statistics
Matches: 95, Mismatches: 11, Indels: 24
0.73 0.08 0.18
Matches are distributed among these distances:
16 3 0.03
17 39 0.41
18 31 0.33
19 8 0.08
20 14 0.15
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (18 bp):
TTAAAATAAATAATAAAA
Found at i:8711919 original size:17 final size:17
Alignment explanation
Indices: 8711897--8712043 Score: 131
Period size: 17 Copynumber: 8.4 Consensus size: 17
8711887 AAAATAAATG
8711897 AGATAAAATAAAAATAA
1 AGATAAAATAAAAATAA
*
8711914 AGATAAGAATAAAGATAA
1 AGATAA-AATAAAAATAA
*
8711932 A-ATAAAAATAAAGATAA
1 AGAT-AAAATAAAAATAA
*
8711949 A-AGTAAAATAAGAAATGA
1 AGA-TAAAATAA-AAATAA
*
8711967 ATA-AAAATAAAGAATAA
1 AGATAAAATAAA-AATAA
8711984 AGATAAAATAAAAATAA
1 AGATAAAATAAAAATAA
*
8712001 AGAT-AAATACAAGGATAA
1 AGATAAAATA-AA-AATAA
*
8712019 ATATAAAATATAAAATAA
1 AGATAAAATA-AAAATAA
*
8712037 TGATAAA
1 AGATAAA
8712044 CACACCTATA
Statistics
Matches: 109, Mismatches: 11, Indels: 19
0.78 0.08 0.14
Matches are distributed among these distances:
16 6 0.06
17 52 0.48
18 43 0.39
19 8 0.07
ACGTcount: A:0.71, C:0.01, G:0.10, T:0.19
Consensus pattern (17 bp):
AGATAAAATAAAAATAA
Found at i:8712041 original size:24 final size:23
Alignment explanation
Indices: 8711874--8712043 Score: 88
Period size: 24 Copynumber: 7.1 Consensus size: 23
8711864 TTTTAAATAT
8711874 AAATAATAATATTAAAATAAATGAGATA
1 AAATAA-AATA-TAAAAT-AAT--GATA
8711902 AAATAAAA-ATAAAGATAA-GAATA
1 AAATAAAATATAAA-ATAATG-ATA
*
8711925 AAGATAAAATA-AAAATAAAGATA
1 AA-ATAAAATATAAAATAATGATA
8711948 AAAGTAAAATA-AGAAATGAAT-A-A
1 AAA-TAAAATATA-AAAT-AATGATA
*
8711971 AAATAAAGA-ATAAAGATAA-AATAA
1 AAATAAA-ATATAAA-ATAATGAT-A
* * *
8711995 AAATAAAGATA-AATACAAGGATA
1 AAATAAA-ATATAAAATAATGATA
8712018 AATATAAAATATAAAATAATGATA
1 AA-ATAAAATATAAAATAATGATA
8712042 AA
1 AA
8712044 CACACCTATA
Statistics
Matches: 117, Mismatches: 7, Indels: 40
0.71 0.04 0.24
Matches are distributed among these distances:
22 12 0.10
23 39 0.33
24 45 0.38
25 10 0.09
26 3 0.03
27 2 0.02
28 6 0.05
ACGTcount: A:0.70, C:0.01, G:0.09, T:0.21
Consensus pattern (23 bp):
AAATAAAATATAAAATAATGATA
Found at i:8712407 original size:26 final size:26
Alignment explanation
Indices: 8712377--8712430 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8712367 ATCAAAGTAG
*
8712377 AAAAATAAAATGACTTGGACTTAGCC
1 AAAAATAAAATGACTTGGACTAAGCC
* **
8712403 AAAAATGATTTGACTTGGACTAAGCC
1 AAAAATAAAATGACTTGGACTAAGCC
8712429 AA
1 AA
8712431 GTAAAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (26 bp):
AAAAATAAAATGACTTGGACTAAGCC
Found at i:8712442 original size:32 final size:33
Alignment explanation
Indices: 8712403--8712475 Score: 94
Period size: 32 Copynumber: 2.2 Consensus size: 33
8712393 GGACTTAGCC
*
8712403 AAAAATGATTTGACTTGGACTAAG-CCAAGTAA
1 AAAAATGATATGACTTGGACTAAGTCCAAGTAA
* * * *
8712435 AAAAATGATATGACTTGGTCTTAGTCGAAGTTA
1 AAAAATGATATGACTTGGACTAAGTCCAAGTAA
8712468 AAAAATGA
1 AAAAATGA
8712476 CATAATTTAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
32 21 0.60
33 14 0.40
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (33 bp):
AAAAATGATATGACTTGGACTAAGTCCAAGTAA
Found at i:8712551 original size:33 final size:32
Alignment explanation
Indices: 8712403--8712556 Score: 105
Period size: 33 Copynumber: 4.7 Consensus size: 32
8712393 GGACTTAGCC
* * * * *
8712403 AAAAATGATTTGACTTGGACTAAG-CCAAGTAA
1 AAAAATGATATAACTTGGACTTAGTCGAAGT-T
* *
8712435 AAAAATGATATGACTTGGTCTTAGTCGAAGTT
1 AAAAATGATATAACTTGGACTTAGTCGAAGTT
* * * *
8712467 AAAAAATGACATAATTTAGACTTAG-CTAGAGTT
1 -AAAAATGATATAACTTGGACTTAGTCGA-AGTT
* * ** *
8712500 AAGAAACGAGATGGCTTGGACTTAGTCGAAATT
1 AA-AAATGATATAACTTGGACTTAGTCGAAGTT
8712533 GAAAAATGATATAACTTGGACTTA
1 -AAAAATGATATAACTTGGACTTA
8712557 ATTAAGGTCG
Statistics
Matches: 93, Mismatches: 23, Indels: 11
0.73 0.18 0.09
Matches are distributed among these distances:
32 25 0.27
33 64 0.69
34 4 0.04
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (32 bp):
AAAAATGATATAACTTGGACTTAGTCGAAGTT
Found at i:8712679 original size:33 final size:33
Alignment explanation
Indices: 8712631--8712724 Score: 95
Period size: 33 Copynumber: 2.9 Consensus size: 33
8712621 GTCAAAAGTT
* * *
8712631 AAAAA-AAAATTACTTGGATTTAGCCTAGGTCAG
1 AAAAATAAAATGACTTGGATTTAGCCAAAGT-AG
**
8712664 -AAAATAAAATGACTTGG-TCTTAATCAAAGTAG
1 AAAAATAAAATGACTTGGAT-TTAGCCAAAGTAG
*
8712696 AAAAATAAAATGACTTGGACTTAGCCAAA
1 AAAAATAAAATGACTTGGATTTAGCCAAA
8712725 AATGATTTGA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
32 7 0.14
33 42 0.86
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.26
Consensus pattern (33 bp):
AAAAATAAAATGACTTGGATTTAGCCAAAGTAG
Found at i:8712726 original size:26 final size:26
Alignment explanation
Indices: 8712696--8712749 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
8712686 ATCAAAGTAG
*
8712696 AAAAATAAAATGACTTGGACTTAGCC
1 AAAAATAAAATGACTTGGACTAAGCC
* **
8712722 AAAAATGATTTGACTTGGACTAAGCC
1 AAAAATAAAATGACTTGGACTAAGCC
8712748 AA
1 AA
8712750 GTCAAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.24
Consensus pattern (26 bp):
AAAAATAAAATGACTTGGACTAAGCC
Found at i:8712810 original size:33 final size:33
Alignment explanation
Indices: 8712755--8712892 Score: 104
Period size: 33 Copynumber: 4.2 Consensus size: 33
8712745 GCCAAGTCAA
* *
8712755 AAAATGATATGA-TTTGATCTTAGTCAAAGTTAG
1 AAAATGATATAACTTAGA-CTTAGTCAAAGTTAG
* * *
8712788 AAAATGACATAATTTAGACTTAG-CTAGAGTTA-
1 AAAATGATATAACTTAGACTTAGTC-AAAGTTAG
* * * * *
8712820 AGAAATGAGATGACTTGGACTTAGTCGAAGTTAA
1 A-AAATGATATAACTTAGACTTAGTCAAAGTTAG
** *
8712854 AAAATGATATAACTTAGACTTAACCAAGGTT-G
1 AAAATGATATAACTTAGACTTAGTCAAAGTTAG
8712886 AAAATGA
1 AAAATGA
8712893 AAATGACCAA
Statistics
Matches: 82, Mismatches: 18, Indels: 11
0.74 0.16 0.10
Matches are distributed among these distances:
32 9 0.11
33 67 0.82
34 6 0.07
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.30
Consensus pattern (33 bp):
AAAATGATATAACTTAGACTTAGTCAAAGTTAG
Found at i:8712839 original size:319 final size:320
Alignment explanation
Indices: 8712266--8712908 Score: 1108
Period size: 319 Copynumber: 2.0 Consensus size: 320
8712256 TTACTTGGAG
*
8712266 TGAGTTAAAGTTCAAAATGAAATGATTTGGACAGAGTCAAAAGTTTAAAAAATAATGACTTGAAT
1 TGAGTTAAAGTTCAAAATGAAATGATTTGGACAGAGTCAAAAGTTTAAAAAAAAATGACTTGAAT
8712331 TTAGCCTAGGTCAGAAAATAAAATGACTTGGTCTTAATCAAAGTAGAAAAATAAAATGACTTGGA
66 TTAGCCTAGGTCAGAAAATAAAATGACTTGGTCTTAATCAAAGTAGAAAAATAAAATGACTTGGA
*
8712396 CTTAGCCAAAAATGATTTGACTTGGACTAAGCCAAGTAAAAAAATGATATGACTTGGTCTTAGTC
131 CTTAGCCAAAAATGATTTGACTTGGACTAAGCCAAGTAAAAAAATGATATGACTTGATCTTAGTC
* *
8712461 GAAGTTAAAAAATGACATAATTTAGACTTAGCTAGAGTTAAGAAACGAGATGGCTTGGACTTAGT
196 AAAGTTAAAAAATGACATAATTTAGACTTAGCTAGAGTTAAGAAACGAGATGACTTGGACTTAGT
* * ** *
8712526 CGAAATTGAAAAATGATATAACTTGGACTTAATTAAGGTCGAAAATGAAAATGACCCAAC
261 CGAAATTAAAAAATGATATAACTTAGACTTAACCAAGGTCGAAAATGAAAATGACCAAAC
* * * *
8712586 TGAGTTAAAGTTTAAAATGAAATGATTTGGATAGAGTCAAAAG-TTAAAAAAAAATTACTTGGAT
1 TGAGTTAAAGTTCAAAATGAAATGATTTGGACAGAGTCAAAAGTTTAAAAAAAAATGACTTGAAT
8712650 TTAGCCTAGGTCAGAAAATAAAATGACTTGGTCTTAATCAAAGTAGAAAAATAAAATGACTTGGA
66 TTAGCCTAGGTCAGAAAATAAAATGACTTGGTCTTAATCAAAGTAGAAAAATAAAATGACTTGGA
* *
8712715 CTTAGCCAAAAATGATTTGACTTGGACTAAGCCAAGTCAAAAAATGATATGATTTGATCTTAGTC
131 CTTAGCCAAAAATGATTTGACTTGGACTAAGCCAAGTAAAAAAATGATATGACTTGATCTTAGTC
* *
8712780 AAAGTTAGAAAATGACATAATTTAGACTTAGCTAGAGTTAAGAAATGAGATGACTTGGACTTAGT
196 AAAGTTAAAAAATGACATAATTTAGACTTAGCTAGAGTTAAGAAACGAGATGACTTGGACTTAGT
* *
8712845 CGAAGTTAAAAAATGATATAACTTAGACTTAACCAAGGTTGAAAATGAAAATGACCAAAC
261 CGAAATTAAAAAATGATATAACTTAGACTTAACCAAGGTCGAAAATGAAAATGACCAAAC
8712905 TGAG
1 TGAG
8712909 CCAAGGTCGA
Statistics
Matches: 304, Mismatches: 19, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
319 263 0.87
320 41 0.13
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (320 bp):
TGAGTTAAAGTTCAAAATGAAATGATTTGGACAGAGTCAAAAGTTTAAAAAAAAATGACTTGAAT
TTAGCCTAGGTCAGAAAATAAAATGACTTGGTCTTAATCAAAGTAGAAAAATAAAATGACTTGGA
CTTAGCCAAAAATGATTTGACTTGGACTAAGCCAAGTAAAAAAATGATATGACTTGATCTTAGTC
AAAGTTAAAAAATGACATAATTTAGACTTAGCTAGAGTTAAGAAACGAGATGACTTGGACTTAGT
CGAAATTAAAAAATGATATAACTTAGACTTAACCAAGGTCGAAAATGAAAATGACCAAAC
Found at i:8712899 original size:66 final size:66
Alignment explanation
Indices: 8712756--8712899 Score: 150
Period size: 66 Copynumber: 2.2 Consensus size: 66
8712746 CCAAGTCAAA
* * * * * *
8712756 AAATGATATGA-TTTGATCTTAGTCAAAGTTAGAAAATGACATAATTTAGACTTAGCTAGAGTTA
1 AAATGAAATGACTTGGA-CTTAGTCAAAGTTAAAAAATGACATAACTTAGACTTACCAAGAGTTA
8712820 AG
65 AG
* * * *
8712822 AAATGAGATGACTTGGACTTAGTCGAAGTTAAAAAATGATATAACTTAGACTTAACCAAG-GTTG
1 AAATGAAATGACTTGGACTTAGTCAAAGTTAAAAAATGACATAACTTAGACTT-ACCAAGAGTTA
8712886 A-
65 AG
8712887 AAATGAAAATGAC
1 AAATG-AAATGAC
8712900 CAAACTGAGC
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
65 5 0.08
66 52 0.80
67 8 0.12
ACGTcount: A:0.43, C:0.09, G:0.19, T:0.29
Consensus pattern (66 bp):
AAATGAAATGACTTGGACTTAGTCAAAGTTAAAAAATGACATAACTTAGACTTACCAAGAGTTAA
G
Found at i:8712913 original size:32 final size:32
Alignment explanation
Indices: 8712875--8712965 Score: 94
Period size: 32 Copynumber: 2.8 Consensus size: 32
8712865 ACTTAGACTT
8712875 AACCAAGGTTGAAAATGAAAA-TGACCAAACTG
1 AACCAAGGTTGAAAAT-AAAAGTGACCAAACTG
* * * * *
8712907 AGCCAAGGTCGAAAGTAAAAGTGAGCAAATTG
1 AACCAAGGTTGAAAATAAAAGTGACCAAACTG
* **
8712939 AACCAAGGTTGAAGATAAGGGTGACCA
1 AACCAAGGTTGAAAATAAAAGTGACCA
8712966 GATTGAGCCA
Statistics
Matches: 46, Mismatches: 12, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
31 4 0.09
32 42 0.91
ACGTcount: A:0.45, C:0.14, G:0.25, T:0.15
Consensus pattern (32 bp):
AACCAAGGTTGAAAATAAAAGTGACCAAACTG
Found at i:8713107 original size:58 final size:58
Alignment explanation
Indices: 8713045--8713191 Score: 179
Period size: 58 Copynumber: 2.5 Consensus size: 58
8713035 GTCAAGGTTG
* * * * *
8713045 AAAATGACTTAGTCTAAGCCTAAGTCAAAATGAAGATGAC-TGTACTAAGCTAAAGTAA
1 AAAATGACTTGGTCTAAGCTTAAGTCAAAATGAAAATGACAAG-ACTAAGCCAAAGTAA
* * ** *
8713103 AAAATGACTTGGTTTGAGCTTAAGTTTAAATGAAAATGACAAGACTAAGCCAAGGTAA
1 AAAATGACTTGGTCTAAGCTTAAGTCAAAATGAAAATGACAAGACTAAGCCAAAGTAA
*
8713161 AAAATGACTTGGTCTAAGCTTAAGTCGAAAT
1 AAAATGACTTGGTCTAAGCTTAAGTCAAAAT
8713192 ATAAAATCAA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
58 73 0.99
59 1 0.01
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (58 bp):
AAAATGACTTGGTCTAAGCTTAAGTCAAAATGAAAATGACAAGACTAAGCCAAAGTAA
Found at i:8713608 original size:14 final size:15
Alignment explanation
Indices: 8713575--8713610 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
8713565 TACTGTATGC
8713575 AATG-AATGTCATGA
1 AATGTAATGTCATGA
8713589 AA-GTAATG-CATGA
1 AATGTAATGTCATGA
8713602 AATGTAATG
1 AATGTAATG
8713611 AATGCATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.28
Consensus pattern (15 bp):
AATGTAATGTCATGA
Found at i:8714707 original size:17 final size:17
Alignment explanation
Indices: 8714675--8714707 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8714665 CATTCTCCTC
*
8714675 TTTCTTTTTTCATTTTT
1 TTTCTTTTTCCATTTTT
8714692 TTTCTTTTTCC-TTTTT
1 TTTCTTTTTCCATTTTT
8714708 CATTCTCATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
TTTCTTTTTCCATTTTT
Found at i:8714734 original size:20 final size:20
Alignment explanation
Indices: 8714711--8714748 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8714701 CCTTTTTCAT
*
8714711 TCTCATTTTTCATCTTTTAA
1 TCTCATTTGTCATCTTTTAA
*
8714731 TCTCATTTGTCTTCTTTT
1 TCTCATTTGTCATCTTTT
8714749 CAATTTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.21, G:0.03, T:0.63
Consensus pattern (20 bp):
TCTCATTTGTCATCTTTTAA
Found at i:8718970 original size:36 final size:36
Alignment explanation
Indices: 8718930--8719005 Score: 89
Period size: 36 Copynumber: 2.1 Consensus size: 36
8718920 TTGCCAAAAT
* *
8718930 ATCATATCATAAACATAAAATCATGCAATGCAATAA
1 ATCATATAATAAACATAAAATCATACAATGCAATAA
* * * * *
8718966 ATCATGTAATAAATATGAAATCATACCATGTAATAA
1 ATCATATAATAAACATAAAATCATACAATGCAATAA
8719002 ATCA
1 ATCA
8719006 AAGAAAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.51, C:0.14, G:0.07, T:0.28
Consensus pattern (36 bp):
ATCATATAATAAACATAAAATCATACAATGCAATAA
Found at i:8719242 original size:18 final size:18
Alignment explanation
Indices: 8719222--8719290 Score: 63
Period size: 18 Copynumber: 3.7 Consensus size: 18
8719212 AAGCAATAAT
8719222 AAAATATATAAAAAAAATA
1 AAAAT-TATAAAAAAAATA
8719241 AAAATTATAAAAAAAA-A
1 AAAATTATAAAAAAAATA
*
8719258 AATAATGA-AAGGAAAAAATAA
1 AA-AATTATAA--AAAAAAT-A
8719279 AAAATTA-AAAAA
1 AAAATTATAAAAA
8719291 CTTTACCAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
17 5 0.12
18 18 0.42
19 11 0.26
20 6 0.14
21 3 0.07
ACGTcount: A:0.78, C:0.00, G:0.04, T:0.17
Consensus pattern (18 bp):
AAAATTATAAAAAAAATA
Found at i:8719254 original size:20 final size:21
Alignment explanation
Indices: 8719216--8719263 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
8719206 CTATTCAAGC
*
8719216 AATAATAAAATATATAAAAAA
1 AATAATAAAATATAAAAAAAA
*
8719237 AATAA-AAATTATAAAAAAAAA
1 AATAATAAAATAT-AAAAAAAA
8719258 AATAAT
1 AATAAT
8719264 GAAAGGAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (21 bp):
AATAATAAAATATAAAAAAAA
Found at i:8721060 original size:38 final size:37
Alignment explanation
Indices: 8721008--8721101 Score: 118
Period size: 38 Copynumber: 2.5 Consensus size: 37
8720998 GAAGGGGTTC
* *
8721008 AACTTTGCAAAATAAAATACTCTT-TCACCGAGATTTT
1 AACTTTGAAAAATAAAATACT-TTCTCACCGAGACTTT
* **
8721045 AACTTTGAAAAAATAAAGTACTTTCTCATTGAGACTTT
1 AACTTTG-AAAAATAAAATACTTTCTCACCGAGACTTT
8721083 AACTTTGAAAAATAAAATA
1 AACTTTGAAAAATAAAATA
8721102 TAGTGCTCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
37 20 0.41
38 29 0.59
ACGTcount: A:0.44, C:0.14, G:0.09, T:0.34
Consensus pattern (37 bp):
AACTTTGAAAAATAAAATACTTTCTCACCGAGACTTT
Found at i:8721254 original size:38 final size:38
Alignment explanation
Indices: 8721210--8721328 Score: 166
Period size: 38 Copynumber: 3.1 Consensus size: 38
8721200 AACATTAAGT
* *
8721210 AAAATACTCCCCTACAATTGAGGTTTAAAACTTTAAAC
1 AAAATACTCCCTTACAATTGAGGTTTGAAACTTTAAAC
* *
8721248 AAAATACTCTCTTACAACTGAGGTTTGAAACTTTAAAC
1 AAAATACTCCCTTACAATTGAGGTTTGAAACTTTAAAC
* * * *
8721286 AAAATATTCCCTTACAATTAAGGCTTGAAACTTTAAAT
1 AAAATACTCCCTTACAATTGAGGTTTGAAACTTTAAAC
8721324 AAAAT
1 AAAAT
8721329 TTATGACCAG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 71 1.00
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (38 bp):
AAAATACTCCCTTACAATTGAGGTTTGAAACTTTAAAC
Found at i:8721439 original size:48 final size:48
Alignment explanation
Indices: 8721339--8721616 Score: 283
Period size: 48 Copynumber: 5.8 Consensus size: 48
8721329 TTATGACCAG
** * **
8721339 GAAAGCTCCTTCTTAACAAAGGCTT-AAAATTTAAAATTCATGTCCAA
1 GAAAGCTTTTTCTTAACAAAGGCTTGAAACTTTAAAATTCACATCCAA
** *
8721386 GAAAGCTTTTTCTTAACAAAGGCTTGAAACTTTAAAATTCACAAGCAG
1 GAAAGCTTTTTCTTAACAAAGGCTTGAAACTTTAAAATTCACATCCAA
* **
8721434 GAAAGCTTCTTT-TTAATAAAGGCTTGAAACTTTAAAATTCACAAGCAA
1 GAAAGCTT-TTTCTTAACAAAGGCTTGAAACTTTAAAATTCACATCCAA
* * *
8721482 GAAAGCTTCTTCTTAACAAAGGCTTGAAATTTTAAAATTCTCATCCAA
1 GAAAGCTTTTTCTTAACAAAGGCTTGAAACTTTAAAATTCACATCCAA
* ** * * * * *
8721530 GAAAACTCATTCTCAA-AGAAGGCTTGAAACTTTAGAACTCTCATCCAG
1 GAAAGCTTTTTCTTAACA-AAGGCTTGAAACTTTAAAATTCACATCCAA
* ** *
8721578 GAAAGCTTTTTCTCAATGAAGGCTTAAAACTTTAAAATT
1 GAAAGCTTTTTCTTAACAAAGGCTTGAAACTTTAAAATT
8721617 GTTACCTCAA
Statistics
Matches: 195, Mismatches: 31, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
47 26 0.13
48 166 0.85
49 3 0.02
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (48 bp):
GAAAGCTTTTTCTTAACAAAGGCTTGAAACTTTAAAATTCACATCCAA
Found at i:8721579 original size:144 final size:143
Alignment explanation
Indices: 8721339--8721616 Score: 364
Period size: 144 Copynumber: 1.9 Consensus size: 143
8721329 TTATGACCAG
* * ** *
8721339 GAAAGCTCCTTCTTAACAAAGGCTTAAAATTTAAAATTCATGTCCAAGAAAGCTTTTTCTTAACA
1 GAAAGCTCCTTCTTAACAAAGGCTTAAAATTTAAAATTCATATCCAAGAAAACTCATTCTCAACA
* * * *
8721404 AAGGCTTGAAACTTTAAAATTCACAAGCAGGAAAGCTTCTTT-TTAATAAAGGCTTGAAACTTTA
66 AAGGCTTGAAACTTTAAAACTCACAACCAGGAAAGCTT-TTTCTCAATAAAGGCTTAAAACTTTA
8721468 AAATTCACAAGCAA
130 AAATTCACAAGCAA
* *
8721482 GAAAGCTTCTTCTTAACAAAGGCTTGAAATTTTAAAATTC-TCATCCAAGAAAACTCATTCTCAA
1 GAAAGCTCCTTCTTAACAAAGGCTT-AAAATTTAAAATTCAT-ATCCAAGAAAACTCATTCTCAA
* * * *
8721546 -AGAAGGCTTGAAACTTTAGAACTCTCATCCAGGAAAGCTTTTTCTCAATGAAGGCTTAAAACTT
64 CA-AAGGCTTGAAACTTTAAAACTCACAACCAGGAAAGCTTTTTCTCAATAAAGGCTTAAAACTT
8721610 TAAAATT
128 TAAAATT
8721617 GTTACCTCAA
Statistics
Matches: 116, Mismatches: 15, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
143 29 0.25
144 87 0.75
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.31
Consensus pattern (143 bp):
GAAAGCTCCTTCTTAACAAAGGCTTAAAATTTAAAATTCATATCCAAGAAAACTCATTCTCAACA
AAGGCTTGAAACTTTAAAACTCACAACCAGGAAAGCTTTTTCTCAATAAAGGCTTAAAACTTTAA
AATTCACAAGCAA
Found at i:8721827 original size:22 final size:22
Alignment explanation
Indices: 8721799--8721841 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8721789 AACATGTATG
**
8721799 ATGCATAGGATGAATGCAATGT
1 ATGCATAAAATGAATGCAATGT
8721821 ATGCATAAAATGAATGCAATG
1 ATGCATAAAATGAATGCAATG
8721842 CATGAGCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (22 bp):
ATGCATAAAATGAATGCAATGT
Found at i:8722065 original size:18 final size:17
Alignment explanation
Indices: 8722044--8722101 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 17
8722034 ACCAAGATTT
8722044 GTAAAGGTTTAAAAATTC
1 GTAAAGGTTT-AAAATTC
8722062 GTAAA-GTTTCCAAAATTC
1 GTAAAGGTTT--AAAATTC
* *
8722080 GCAAAGGTCTTAAGATTC
1 GTAAAGGT-TTAAAATTC
8722098 GTAA
1 GTAA
8722102 CAGTTTTAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
17 4 0.12
18 25 0.76
19 2 0.06
20 2 0.06
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (17 bp):
GTAAAGGTTTAAAATTC
Found at i:8722184 original size:36 final size:36
Alignment explanation
Indices: 8722126--8722209 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 36
8722116 GGAGTCAATA
* * *
8722126 ATTCAAAGATTCACATTTAAAAATATTAGATATTCAC
1 ATTC-AAGATTTACATTAAAAAATATTAGAGATTCAC
* * * **
8722163 ATTCAAGATTTATATTAAAAAATCTTATAGATTTGC
1 ATTCAAGATTTACATTAAAAAATATTAGAGATTCAC
8722199 ATTCAAGATTT
1 ATTCAAGATTT
8722210 TAAAGATTCA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
36 35 0.90
37 4 0.10
ACGTcount: A:0.43, C:0.11, G:0.07, T:0.39
Consensus pattern (36 bp):
ATTCAAGATTTACATTAAAAAATATTAGAGATTCAC
Found at i:8722255 original size:47 final size:47
Alignment explanation
Indices: 8722193--8722282 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 47
8722183 AATCTTATAG
** * * *
8722193 ATTTGCATTCAAGATTTTAAAGATTCACATTTGAAAATCTTTTTGAA
1 ATTTGCAGCCAAGATTTCAAAAATTCACATTAGAAAATCTTTTTGAA
8722240 ATTTGCAGCCAAGATTTCAAAAATTCACATTAGAAAATCTTTT
1 ATTTGCAGCCAAGATTTCAAAAATTCACATTAGAAAATCTTTT
8722283 ATATCTAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.39
Consensus pattern (47 bp):
ATTTGCAGCCAAGATTTCAAAAATTCACATTAGAAAATCTTTTTGAA
Found at i:8722316 original size:20 final size:20
Alignment explanation
Indices: 8722291--8722329 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8722281 TTATATCTAA
8722291 AATTCAAACATTCTCATTCT
1 AATTCAAACATTCTCATTCT
8722311 AATTCAAACATTCTCATTC
1 AATTCAAACATTCTCATTC
8722330 AAAAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.26, G:0.00, T:0.38
Consensus pattern (20 bp):
AATTCAAACATTCTCATTCT
Found at i:8725138 original size:132 final size:133
Alignment explanation
Indices: 8724952--8725346 Score: 355
Period size: 132 Copynumber: 3.0 Consensus size: 133
8724942 ATAAAAATGA
* * *
8724952 ATATGCAAATACGTATATGCAATACATAGTAACAACAAAAATTCATATTCAAAACTATGTATAAA
1 ATATGCAAATACATATATGCAATACATAATAACAACAAAAATTCATATTCAAAACTATGTACAAA
** * * *
8725017 A-TTGAAAAGGCAAAGATTTTATCAAACAAATGAAATAATGT-ACATACAAAGATGTTTACATGG
66 ACTAAAAAAGGCAAAGATTCTACCAAACAAATGAAATAATGTCA-ACACAAAGATGTTTACATGG
8725080 ATCT
130 ATCT
* *
8725084 ATATGTAAATACATGTATGCAATACATAATGAA-AACAAAAATTCATA-TCTAAAACTATGTACA
1 ATATGCAAATACATATATGCAATACATAAT-AACAACAAAAATTCATATTC-AAAACTATGTACA
* * * *
8725147 AAACTAAAAAAGGCAAAGATTCTCCCAAGCAAATGAAATAATGTCAACACAAAGATGTTTATATA
64 AAACTAAAAAAGGCAAAGATTCTACCAAACAAATGAAATAATGTCAACACAAAGATGTTTACATG
**
8725212 GATAA
129 GATCT
* * * * * * * * * * *
8725217 AAATGCATATGCAGATA--CATTA-ATGTAAT-GCATAGTAAGAATTTATATTCACAACTATATA
1 ATATGCAAATACATATATGCAATACA--TAATAACA-A-CAAAAATTCATATTCAAAACTATGTA
* *
8725278 CAAAAC-AAAAAAGGCAAAGACTACT-CCAAACAAATGGAATAATGTACATACA-AAA-ATGTTT
62 CAAAACTAAAAAAGGCAAAGA-TTCTACCAAACAAATGAAATAATGT-CA-ACACAAAGATGTTT
8725339 ACATGGAT
124 ACATGGAT
8725347 AAAATTGTAT
Statistics
Matches: 216, Mismatches: 34, Indels: 26
0.78 0.12 0.09
Matches are distributed among these distances:
130 1 0.00
131 7 0.03
132 104 0.48
133 98 0.45
134 6 0.03
ACGTcount: A:0.49, C:0.13, G:0.11, T:0.26
Consensus pattern (133 bp):
ATATGCAAATACATATATGCAATACATAATAACAACAAAAATTCATATTCAAAACTATGTACAAA
ACTAAAAAAGGCAAAGATTCTACCAAACAAATGAAATAATGTCAACACAAAGATGTTTACATGGA
TCT
Found at i:8725379 original size:132 final size:133
Alignment explanation
Indices: 8725136--8725382 Score: 324
Period size: 132 Copynumber: 1.9 Consensus size: 133
8725126 TCATATCTAA
* * *
8725136 AACTATGTACAAAACTAAAAAAGGCAAAGATTCTCCCAAGCAAATGAAATAATGTCAACACAAAG
1 AACTATATACAAAACTAAAAAAGGCAAAGATACTCCCAAACAAATGAAATAATGTCAACACAAAG
* * **
8725201 ATGTTTATATAGATAAAAATGCATATGCAGATACATTAATGTAATGCATAGTAAGAATTTATATT
66 ATGTTTACATAGATAAAAATGCATATGCAAATACATTAATACAATGCATAGTAAGAATTTATATT
8725266 CAC
131 CAC
*
8725269 AACTATATACAAAAC-AAAAAAGGCAAAGACTACT-CCAAACAAATGGAATAATGTACATACA-A
1 AACTATATACAAAACTAAAAAAGGCAAAGA-TACTCCCAAACAAATGAAATAATGT-CA-ACACA
* * *
8725331 AA-ATGTTTACATGGATAAAATTGTATATGCAAATACATGT-ATACAATGCATA
63 AAGATGTTTACATAGATAAAAATGCATATGCAAATACAT-TAATACAATGCATA
8725383 AAAATAATAG
Statistics
Matches: 99, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
132 73 0.74
133 23 0.23
134 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.12, T:0.25
Consensus pattern (133 bp):
AACTATATACAAAACTAAAAAAGGCAAAGATACTCCCAAACAAATGAAATAATGTCAACACAAAG
ATGTTTACATAGATAAAAATGCATATGCAAATACATTAATACAATGCATAGTAAGAATTTATATT
CAC
Found at i:8726695 original size:12 final size:12
Alignment explanation
Indices: 8726678--8726732 Score: 58
Period size: 12 Copynumber: 4.6 Consensus size: 12
8726668 CACGCAATGC
8726678 AATAAATCATGT
1 AATAAATCATGT
*
8726690 AATAAA-CATGA
1 AATAAATCATGT
* *
8726701 AATCATATCATGC
1 AAT-AAATCATGT
8726714 AATAAATCATGT
1 AATAAATCATGT
*
8726726 AAAAAAT
1 AATAAAT
8726733 TATCATGCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
11 7 0.20
12 21 0.60
13 7 0.20
ACGTcount: A:0.55, C:0.11, G:0.07, T:0.27
Consensus pattern (12 bp):
AATAAATCATGT
Found at i:8726704 original size:36 final size:36
Alignment explanation
Indices: 8726654--8726784 Score: 102
Period size: 36 Copynumber: 3.9 Consensus size: 36
8726644 AATATTATGC
* *
8726654 AATAAATATAAAATCA-CGCAATGCAATAAATCATGT
1 AATAAACATAAAATCATAGC-ATGCAATAAATCATGT
* *
8726690 AATAAACATGAAATCATATCATGCAATAAATCATGT
1 AATAAACATAAAATCATAGCATGCAATAAATCATGT
**
8726726 AA-AAA-AT----T-AT--CATGCAATAATATCATAA
1 AATAAACATAAAATCATAGCATGCAATAA-ATCATGT
* *
8726754 AATAAATATAAAATCATATCATGCAATAAAT
1 AATAAACATAAAATCATAGCATGCAATAAAT
8726785 ATAATTAATC
Statistics
Matches: 78, Mismatches: 6, Indels: 22
0.74 0.06 0.21
Matches are distributed among these distances:
27 10 0.13
28 7 0.09
29 5 0.06
30 3 0.04
34 3 0.04
35 5 0.06
36 34 0.44
37 11 0.14
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.27
Consensus pattern (36 bp):
AATAAACATAAAATCATAGCATGCAATAAATCATGT
Found at i:8726808 original size:20 final size:21
Alignment explanation
Indices: 8726757--8726821 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 21
8726747 ATCATAAAAT
* *
8726757 AAATATAAAATCATATCATGC
1 AAATATATAATAATATCATGC
* *
8726778 AATAAATATAATTA-ATCATGC
1 AA-ATATATAATAATATCATGC
8726799 AAATATATAA-AATATCATGC
1 AAATATATAATAATATCATGC
8726819 AAA
1 AAA
8726822 AAAAAAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
19 1 0.03
20 17 0.46
21 11 0.30
22 8 0.22
ACGTcount: A:0.55, C:0.11, G:0.05, T:0.29
Consensus pattern (21 bp):
AAATATATAATAATATCATGC
Found at i:8726830 original size:20 final size:20
Alignment explanation
Indices: 8726769--8726831 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
8726759 ATATAAAATC
* * *
8726769 ATATCATGCAATAAATATAA
1 ATATCATGCAAAAAAAAAAA
* * * *
8726789 TTAATCATGCAAATATATAAA
1 AT-ATCATGCAAAAAAAAAAA
8726810 ATATCATGCAAAAAAAAAAA
1 ATATCATGCAAAAAAAAAAA
8726830 AT
1 AT
8726832 CAACTAAGAG
Statistics
Matches: 31, Mismatches: 11, Indels: 2
0.70 0.25 0.05
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.27
Consensus pattern (20 bp):
ATATCATGCAAAAAAAAAAA
Found at i:8728271 original size:6 final size:6
Alignment explanation
Indices: 8728250--8728342 Score: 73
Period size: 6 Copynumber: 15.8 Consensus size: 6
8728240 AAACCAAGAA
* * * * * *
8728250 TAAAA- TAAAAT CAAAAT TAAAAT CAAAAC CAAAAT TAAGAC TAAAAT
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT
* * * * *
8728297 TAAAAT TAACAT TAAAA- CAAAAT CAAAAT CAAAAT CAAAAT TAAAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAAT TAAAA
8728343 ATTTTGGGCT
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
5 9 0.12
6 63 0.88
ACGTcount: A:0.67, C:0.11, G:0.01, T:0.22
Consensus pattern (6 bp):
TAAAAT
Found at i:8728282 original size:18 final size:18
Alignment explanation
Indices: 8728250--8728342 Score: 102
Period size: 18 Copynumber: 5.3 Consensus size: 18
8728240 AAACCAAGAA
8728250 TAAAAT-AAAATCAAAAT
1 TAAAATCAAAATCAAAAT
*
8728267 TAAAATCAAAACCAAAAT
1 TAAAATCAAAATCAAAAT
* *
8728285 TAAGA-CTAAAATTAAAAT
1 TAAAATC-AAAATCAAAAT
* *
8728303 TAACATTAAAA-CAAAAT
1 TAAAATCAAAATCAAAAT
*
8728320 CAAAATCAAAATCAAAAT
1 TAAAATCAAAATCAAAAT
8728338 TAAAA
1 TAAAA
8728343 ATTTTGGGCT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
17 20 0.33
18 41 0.67
ACGTcount: A:0.67, C:0.11, G:0.01, T:0.22
Consensus pattern (18 bp):
TAAAATCAAAATCAAAAT
Found at i:8729043 original size:21 final size:21
Alignment explanation
Indices: 8729019--8729058 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
8729009 TTAAAAAAAA
8729019 AAAACATTAATTTA-ACTTTTT
1 AAAA-ATTAATTTACACTTTTT
*
8729040 AAAATTTAATTTACACTTT
1 AAAAATTAATTTACACTTT
8729059 CCATTAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.47
Consensus pattern (21 bp):
AAAAATTAATTTACACTTTTT
Found at i:8731526 original size:43 final size:43
Alignment explanation
Indices: 8731472--8731599 Score: 127
Period size: 43 Copynumber: 2.9 Consensus size: 43
8731462 AAGCTTGAAT
*
8731472 TTTAGGAATTTTGGATTTTGGGGTTTGAATTTAAGAGTTTAAAGG
1 TTTAGG-ATTTTGGATTTTGGGGTTTGAATTTAAGGGTTTAAA-G
* ** *
8731517 TTT-GGATTTTGTG-GTTTGGGGTTTTG-ATTTAAGGGTTTGGAT
1 TTTAGGATTTTG-GATTTTGGGG-TTTGAATTTAAGGGTTTAAAG
*
8731559 TTTAGGGATTTTGGATTTTGGGATTTGAATTTTAAGGGTTT
1 TTTA-GGATTTTGGATTTTGGGGTTTGAA-TTTAAGGGTTT
8731600 GGAATTTTAA
Statistics
Matches: 69, Mismatches: 7, Indels: 14
0.77 0.08 0.16
Matches are distributed among these distances:
42 3 0.04
43 30 0.43
44 22 0.32
45 14 0.20
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (43 bp):
TTTAGGATTTTGGATTTTGGGGTTTGAATTTAAGGGTTTAAAG
Found at i:8731573 original size:16 final size:14
Alignment explanation
Indices: 8731535--8731694 Score: 97
Period size: 16 Copynumber: 10.4 Consensus size: 14
8731525 TTGTGGTTTG
* *
8731535 GGGTTTTGATTTAA
1 GGGTTTGGATTTTA
8731549 GGGTTTGGATTTTA
1 GGGTTTGGATTTTA
8731563 GGGATTTTGGATTTT-
1 GGG--TTTGGATTTTA
*
8731578 GGGATTTGAATTTTAA
1 GGG-TTTGGATTTT-A
8731594 GGGTTTGGAATTTTAA
1 GGGTTTGG-ATTTT-A
** *
8731610 GGGTTCAGATTTAA
1 GGGTTTGGATTTTA
* *
8731624 GAGATTTTAGATTTTTAA
1 G-G-GTTTGGA-TTTT-A
8731642 GGGTTTGGATTTTA
1 GGGTTTGGATTTTA
*
8731656 GAAGGTTTTGAATTTTA
1 G--GG-TTTGGATTTTA
8731673 GGGGTTTGGATTTTA
1 -GGGTTTGGATTTTA
8731688 GGAGTTT
1 GG-GTTT
8731695 TAGAAACCTA
Statistics
Matches: 117, Mismatches: 15, Indels: 27
0.74 0.09 0.17
Matches are distributed among these distances:
14 30 0.26
15 30 0.26
16 40 0.34
17 14 0.12
18 3 0.03
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (14 bp):
GGGTTTGGATTTTA
Found at i:8731653 original size:32 final size:31
Alignment explanation
Indices: 8731544--8731699 Score: 124
Period size: 32 Copynumber: 5.0 Consensus size: 31
8731534 GGGGTTTTGA
*
8731544 TTTAAGGGTTTGGATTTTAGGGATTTT-GGAT
1 TTTAAGGGTTTGGATTTTA-GGATTTTAGAAT
* * *
8731575 TTT--GGGATTTGAATTTTAAGG-GTTTGGAAT
1 TTTAAGGG-TTTGGATTTT-AGGATTTTAGAAT
** * *
8731605 TTTAAGGGTTCAGATTTAAGAGATTTTAGATT
1 TTTAAGGGTTTGGATTTTAG-GATTTTAGAAT
*
8731637 TTTAAGGGTTTGGATTTTAGAAGGTTTT-GAAT
1 TTTAAGGGTTTGGATTTTAG--GATTTTAGAAT
*
8731669 TTTAGGGGTTTGGATTTTAGGAGTTTTAGAA
1 TTTAAGGGTTTGGATTTTAGGA-TTTTAGAA
8731700 ACCTAGGATT
Statistics
Matches: 98, Mismatches: 17, Indels: 19
0.73 0.13 0.14
Matches are distributed among these distances:
29 6 0.06
30 20 0.20
31 15 0.15
32 51 0.52
33 6 0.06
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (31 bp):
TTTAAGGGTTTGGATTTTAGGATTTTAGAAT
Found at i:8731688 original size:15 final size:15
Alignment explanation
Indices: 8731534--8731694 Score: 101
Period size: 15 Copynumber: 10.5 Consensus size: 15
8731524 TTTGTGGTTT
*
8731534 GGGGTTTTGA-TTTA
1 GGGGTTTGGATTTTA
*
8731548 AGGGTTTGGATTTTA
1 GGGGTTTGGATTTTA
*
8731563 GGGATTTTGGATTTT-
1 GGG-GTTTGGATTTTA
* *
8731578 GGGATTTGAATTTTA
1 GGGGTTTGGATTTTA
*
8731593 AGGGTTTGGAATTTTA
1 GGGGTTTGG-ATTTTA
* ** *
8731609 AGGGTTCAGATTTAA
1 GGGGTTTGGATTTTA
** *
8731624 GAGATTTTAGATTTTTA
1 G-GGGTTTGGA-TTTTA
*
8731641 AGGGTTTGGATTTTA
1 GGGGTTTGGATTTTA
* *
8731656 GAAGGTTTTGAATTTTA
1 G--GGGTTTGGATTTTA
8731673 GGGGTTTGGATTTTA
1 GGGGTTTGGATTTTA
*
8731688 GGAGTTT
1 GGGGTTT
8731695 TAGAAACCTA
Statistics
Matches: 112, Mismatches: 27, Indels: 15
0.73 0.18 0.10
Matches are distributed among these distances:
14 17 0.15
15 43 0.38
16 35 0.31
17 17 0.15
ACGTcount: A:0.22, C:0.01, G:0.30, T:0.47
Consensus pattern (15 bp):
GGGGTTTGGATTTTA
Found at i:8732107 original size:23 final size:23
Alignment explanation
Indices: 8732081--8732139 Score: 54
Period size: 22 Copynumber: 2.6 Consensus size: 23
8732071 TTTATCATGC
8732081 ATAAATATAAAAAT-ATACTTAAA
1 ATAAATATAAAAATAATA-TTAAA
8732104 ATAACA-A-AAAAATAATATTAAA
1 ATAA-ATATAAAAATAATATTAAA
*
8732126 AAAAAT-TAGAAAAT
1 ATAAATATA-AAAAT
8732140 TAAAAAAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 10
0.73 0.02 0.24
Matches are distributed among these distances:
21 1 0.03
22 15 0.50
23 13 0.43
24 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.25
Consensus pattern (23 bp):
ATAAATATAAAAATAATATTAAA
Found at i:8733116 original size:14 final size:15
Alignment explanation
Indices: 8733099--8733140 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
8733089 ATTATTTTTC
8733099 TTTTTTTTGTATTA-
1 TTTTTTTTGTATTAT
*
8733113 -TTTTTTGGTATTTAT
1 TTTTTTTTGTA-TTAT
8733128 TTTTTTTTGTATT
1 TTTTTTTTGTATT
8733141 TCGTATAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 9 0.39
14 3 0.13
15 2 0.09
16 9 0.39
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.79
Consensus pattern (15 bp):
TTTTTTTTGTATTAT
Found at i:8733132 original size:16 final size:17
Alignment explanation
Indices: 8733108--8733141 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
8733098 CTTTTTTTTG
8733108 TATTATTTTTTGGTATT
1 TATTATTTTTTGGTATT
*
8733125 TATT-TTTTTTTGTATT
1 TATTATTTTTTGGTATT
8733141 T
1 T
8733142 CGTATAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.15, C:0.00, G:0.09, T:0.76
Consensus pattern (17 bp):
TATTATTTTTTGGTATT
Found at i:8733399 original size:22 final size:22
Alignment explanation
Indices: 8733363--8733473 Score: 150
Period size: 22 Copynumber: 5.0 Consensus size: 22
8733353 AATCGAATTT
8733363 ATGCCCGGAGGTCTTACAAATC
1 ATGCCCGGAGGTCTTACAAATC
** * *
8733385 ATATCCGAAGGTCTTAGAAATC
1 ATGCCCGGAGGTCTTACAAATC
8733407 ATGCCCGGAGGTCTTACAGAATC
1 ATGCCCGGAGGTCTTACA-AATC
* * *
8733430 ATGCCCGGAGATCTTACAGATT
1 ATGCCCGGAGGTCTTACAAATC
8733452 ATGCCCGGAGGTCTTACAAATC
1 ATGCCCGGAGGTCTTACAAATC
8733474 TCGAAATCTT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
22 53 0.72
23 21 0.28
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.24
Consensus pattern (22 bp):
ATGCCCGGAGGTCTTACAAATC
Found at i:8733456 original size:45 final size:44
Alignment explanation
Indices: 8733361--8733473 Score: 154
Period size: 45 Copynumber: 2.5 Consensus size: 44
8733351 CGAATCGAAT
* * *
8733361 TTATGCCCGGAGGTCTTACAAATCATATCCGAAGGTCTTAGAAA
1 TTATGCCCGGAGGTCTTACAAATCATACCCGAAGATCTTACAAA
* * * *
8733405 TCATGCCCGGAGGTCTTACAGAATCATGCCCGGAGATCTTACAGA
1 TTATGCCCGGAGGTCTTACA-AATCATACCCGAAGATCTTACAAA
8733450 TTATGCCCGGAGGTCTTACAAATC
1 TTATGCCCGGAGGTCTTACAAATC
8733474 TCGAAATCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 23 0.38
45 37 0.62
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (44 bp):
TTATGCCCGGAGGTCTTACAAATCATACCCGAAGATCTTACAAA
Found at i:8733986 original size:29 final size:29
Alignment explanation
Indices: 8733944--8734015 Score: 135
Period size: 29 Copynumber: 2.5 Consensus size: 29
8733934 GTGCAAATGC
8733944 AAGTGATGCAAATGTAGTAGTACAGATGT
1 AAGTGATGCAAATGTAGTAGTACAGATGT
*
8733973 AAGTGATGCCAATGTAGTAGTACAGATGT
1 AAGTGATGCAAATGTAGTAGTACAGATGT
8734002 AAGTGATGCAAATG
1 AAGTGATGCAAATG
8734016 CAAATATCCC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (29 bp):
AAGTGATGCAAATGTAGTAGTACAGATGT
Found at i:8734269 original size:33 final size:32
Alignment explanation
Indices: 8734199--8734710 Score: 525
Period size: 33 Copynumber: 15.6 Consensus size: 32
8734189 TTGGGGCTAA
*
8734199 ATAAACTTGGCTTAAATTTT-ATTGAAGGCCA-
1 ATAAACTGGGCTTAAATTTTCATTG-AGGCCAG
8734230 ACTAAACTGGGCTTAAATTTTCATTTGAGGCCAG
1 A-TAAACTGGGCTTAAATTTTCA-TTGAGGCCAG
* *
8734264 ATAAACTGGGCTTAAATCTTCATTTGAAGCCAG
1 ATAAACTGGGCTTAAATTTTCA-TTGAGGCCAG
* ***
8734297 ATAAATTGGGGCTTAAAACCTCATTGATGGCCAG
1 ATAAACT-GGGCTTAAATTTTCATTGA-GGCCAG
* * *
8734331 ATGAACTGGGCTTAAAGTTTCATTAATGGCCAG
1 ATAAACTGGGCTTAAATTTTCATTGA-GGCCAG
* *
8734364 ATAAACTGGGCTTAAA-TGTCATTGTTGGCCAG
1 ATAAACTGGGCTTAAATTTTCATTG-AGGCCAG
* *
8734396 ATAAACTGGGCTTAAAGTTTCATTGAAAGCCAG
1 ATAAACTGGGCTTAAATTTTCATTG-AGGCCAG
*
8734429 ATAAACTGGGCTTAAA-TATCATTGATGGCCAG
1 ATAAACTGGGCTTAAATTTTCATTGA-GGCCAG
**
8734461 ATAAACTGGGCTTAAAGCTTCATTTGAGGCCAG
1 ATAAACTGGGCTTAAATTTTCA-TTGAGGCCAG
*
8734494 ATAAACTGCGCTTAAA-TTTCATTGATGGCCAG
1 ATAAACTGGGCTTAAATTTTCATTGA-GGCCAG
***
8734526 ATAAACTGGGACTTAAAACCTCATTGATGGCCAG
1 ATAAACTGGG-CTTAAATTTTCATTGA-GGCCAG
* *
8734560 ATAAACTGGGCTTAAAGCTTT-ATTAATGGCCAG
1 ATAAACTGGGCTTAAA-TTTTCATTGA-GGCCAG
** * *
8734593 ATAAACTGGGCTTAAAACTTCATTTGAGGCTAA
1 ATAAACTGGGCTTAAATTTTCA-TTGAGGCCAG
*
8734626 ATAAACTGGGCTTAAATTTT-ATTGTTGGCCAG
1 ATAAACTGGGCTTAAATTTTCATTG-AGGCCAG
** *
8734658 ATAAACTGGGCTTAAAACTTCATTAATGGCCAG
1 ATAAACTGGGCTTAAATTTTCATTGA-GGCCAG
8734691 ATAAACTGGGCTTAAATTTT
1 ATAAACTGGGCTTAAATTTT
8734711 ATTTTATTTT
Statistics
Matches: 411, Mismatches: 50, Indels: 38
0.82 0.10 0.08
Matches are distributed among these distances:
31 9 0.02
32 118 0.29
33 225 0.55
34 59 0.14
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (32 bp):
ATAAACTGGGCTTAAATTTTCATTGAGGCCAG
Found at i:8734592 original size:197 final size:193
Alignment explanation
Indices: 8734199--8734709 Score: 652
Period size: 197 Copynumber: 2.6 Consensus size: 193
8734189 TTGGGGCTAA
* *
8734199 ATAAACTTGGCTTAAATTTTATTGAAGGCCAACTAAACTGGGCTTAAATTTTCATTTGA-GGCCA
1 ATAAACTGGGCTTAAATTTCATTGAAGGCCAA-TAAACTGGGCTTAAA-TTTCA-TTGATGGCCA
* * * **
8734263 GATAAACTGGGCTTAAATCTTCATTTGAAGCCAGATAAATTGGGGCTTAAAACCTCATTGATGGC
63 GATAAACTGGGCTTAAAACTTCATTTGAGGCCAGATAAACT-GGGCTT-AAATTTCATTGATGGC
* *** **
8734328 CAGATGAACTGGGCTTAAAGTTTCATTAATGGCCAGATAAACTGGGCTTAAATGTCATTGTTGGC
126 CAGATAAACTGGGCTTAAAACCTCATTAATGGCCAGATAAACTGGGCTTAAATGTCATTAATGGC
8734393 CAG
191 CAG
* *
8734396 ATAAACTGGGCTTAAAGTTTCATTGAAAGCCAGATAAACTGGGCTTAAATATCATTGATGGCCAG
1 ATAAACTGGGCTTAAA-TTTCATTGAAGGCCA-ATAAACTGGGCTTAAATTTCATTGATGGCCAG
* *
8734461 ATAAACTGGGCTTAAAGCTTCATTTGAGGCCAGATAAACTGCGCTTAAATTTCATTGATGGCCAG
64 ATAAACTGGGCTTAAAACTTCATTTGAGGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAG
* *
8734526 ATAAACTGGGACTTAAAACCTCATTGATGGCCAGATAAACTGGGCTTAAA-GCTTTATTAATGGC
129 ATAAACTGGG-CTTAAAACCTCATTAATGGCCAGATAAACTGGGCTTAAATG--TCATTAATGGC
8734590 CAG
191 CAG
* * * *
8734593 ATAAACTGGGCTTAAAACTTCATTTG-AGGCTAAATAAACTGGGCTTAAATTTTATTGTTGGCCA
1 ATAAACTGGGCTT-AAATTTCA-TTGAAGGC-CAATAAACTGGGCTTAAATTTCATTGATGGCCA
*
8734657 GATAAACTGGGCTTAAAACTTCA-TTAATGGCCAGATAAACTGGGCTTAAATTT
63 GATAAACTGGGCTTAAAACTTCATTTGA-GGCCAGATAAACTGGGCTTAAATTT
8734710 TATTTTATTT
Statistics
Matches: 277, Mismatches: 27, Indels: 20
0.85 0.08 0.06
Matches are distributed among these distances:
195 27 0.10
196 47 0.17
197 167 0.60
198 35 0.13
199 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (193 bp):
ATAAACTGGGCTTAAATTTCATTGAAGGCCAATAAACTGGGCTTAAATTTCATTGATGGCCAGAT
AAACTGGGCTTAAAACTTCATTTGAGGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAGAT
AAACTGGGCTTAAAACCTCATTAATGGCCAGATAAACTGGGCTTAAATGTCATTAATGGCCAG
Found at i:8734713 original size:65 final size:64
Alignment explanation
Indices: 8734199--8734709 Score: 591
Period size: 65 Copynumber: 7.8 Consensus size: 64
8734189 TTGGGGCTAA
* * *
8734199 ATAAACTTGGCTT-AAATTTTATTGAAGGCCA-ACTAAACTGGGCTTAAATTTTCATTTGA-GGC
1 ATAAACTGGGCTTAAAACTTCATT-AAGGCCAGA-TAAACTGGGCTTAAA-TTTCA-TTGATGGC
8734261 CAG
62 CAG
* * **
8734264 ATAAACTGGGCTTAAATCTTCATTTGAA-GCCAGATAAATTGGGGCTTAAAACCTCATTGATGGC
1 ATAAACTGGGCTTAAAACTTCA-TT-AAGGCCAGATAAACT-GGGCTT-AAATTTCATTGATGGC
8734328 CAG
62 CAG
* ** * *
8734331 ATGAACTGGGCTTAAAGTTTCATTAATGGCCAGATAAACTGGGCTTAAATGTCATTGTTGGCCAG
1 ATAAACTGGGCTTAAAACTTCATTAA-GGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAG
** * *
8734396 ATAAACTGGGCTTAAAGTTTCATTGAAAGCCAGATAAACTGGGCTTAAATATCATTGATGGCCAG
1 ATAAACTGGGCTTAAAACTTCATT-AAGGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAG
* * *
8734461 ATAAACTGGGCTTAAAGCTTCATTTGAGGCCAGATAAACTGCGCTTAAATTTCATTGATGGCCAG
1 ATAAACTGGGCTTAAAACTTCA-TTAAGGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAG
* * *
8734526 ATAAACTGGGACTTAAAACCTCATTGATGGCCAGATAAACTGGGCTTAAAGCTTT-ATTAATGGC
1 ATAAACTGGG-CTTAAAACTTCATT-AAGGCCAGATAAACTGGGCTTAAA--TTTCATTGATGGC
8734590 CAG
62 CAG
* * * * *
8734593 ATAAACTGGGCTTAAAACTTCATTTGAGGCTAAATAAACTGGGCTTAAATTTTATTGTTGGCCAG
1 ATAAACTGGGCTTAAAACTTCA-TTAAGGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAG
8734658 ATAAACTGGGCTTAAAACTTCATTAATGGCCAGATAAACTGGGCTTAAATTT
1 ATAAACTGGGCTTAAAACTTCATTAA-GGCCAGATAAACTGGGCTTAAATTT
8734710 TATTTTATTT
Statistics
Matches: 390, Mismatches: 39, Indels: 34
0.84 0.08 0.07
Matches are distributed among these distances:
64 6 0.02
65 212 0.54
66 92 0.24
67 74 0.19
68 6 0.02
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (64 bp):
ATAAACTGGGCTTAAAACTTCATTAAGGCCAGATAAACTGGGCTTAAATTTCATTGATGGCCAG
Found at i:8735510 original size:17 final size:17
Alignment explanation
Indices: 8735477--8735510 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
8735467 CATTTCTTTC
8735477 CCTTTTTTTTTTATTTT
1 CCTTTTTTTTTTATTTT
8735494 CCTTTCTTTTTTT-TTTT
1 CCTTT-TTTTTTTATTTT
8735511 ACACCCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.03, C:0.15, G:0.00, T:0.82
Consensus pattern (17 bp):
CCTTTTTTTTTTATTTT
Found at i:8739091 original size:73 final size:75
Alignment explanation
Indices: 8738978--8739192 Score: 244
Period size: 73 Copynumber: 2.9 Consensus size: 75
8738968 CGATTTTGCT
** * * * * * * *
8738978 TGTTTCCAACTTCTTTTAGCTACTGTTTGAATACCCGATCAA-CCTTTCCTAAAAGGGATCGATC
1 TGTTTCCAACTTCTTTTAGCTACTGGATGCACATCTGATCAATCCTGTCC-CAAAGAGATCGATC
8739042 -AGTT-T-TACA
65 GA-TTCTGTACA
8739051 TGTTTCCAACTTCTTTTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCG
1 TGTTTCCAACTTCTTTTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCG
*
8739116 ATTCTGTATA
66 ATTCTGTACA
****
8739126 -GTTT-CAACTAAAATTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCG
1 TGTTTCCAACTTCTTTTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCG
8739189 ATTC
66 ATTC
8739193 CCTATGTTTT
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
73 109 0.88
74 12 0.10
75 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.15, T:0.33
Consensus pattern (75 bp):
TGTTTCCAACTTCTTTTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCG
ATTCTGTACA
Found at i:8739219 original size:73 final size:73
Alignment explanation
Indices: 8739066--8739201 Score: 247
Period size: 73 Copynumber: 1.9 Consensus size: 73
8739056 CCAACTTCTT
**
8739066 TTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCGATTCTGTATAGTTTC
1 TTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCGATTCCCTATAGTTTC
8739131 AACTAAAA
66 AACTAAAA
8739139 TTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCGATTCCCTAT-GTTT
1 TTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCGATTCCCTATAGTTT
8739202 TCCTTTTAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
72 4 0.07
73 57 0.93
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.31
Consensus pattern (73 bp):
TTAGCTACTGGATGCACATCTGATCAATCCTGTCCCAAAGAGATCGATCGATTCCCTATAGTTTC
AACTAAAA
Found at i:8739728 original size:234 final size:234
Alignment explanation
Indices: 8739319--8739781 Score: 854
Period size: 234 Copynumber: 2.0 Consensus size: 234
8739309 CAATATGTTC
* * *
8739319 ATTCAAGCATACATTCTACAATCATTCACAAACCATAAAAAAATTTAGATAAACACATATTTGAT
1 ATTCAAGCATACATTATACAATCATGCACAAACCACAAAAAAATTTAGATAAACACATATTTGAT
* *
8739384 CAATCAATAATGTACTATTCATCATAACATCAAGAAATTCACTTTAAGGAACATTAATCATACCA
66 CAATCAATAATGCACTATTCATCATAACATCAAGAAATTCACTTCAAGGAACATTAATCATACCA
8739449 AGTTCACCTCTAATTACATAAAATTTATCCTTATCAAGAGGTTTTGTGAAGATATCAGCTAATTG
131 AGTTCACCTCTAATTACATAAAATTTATCCTTATCAAGAGGTTTTGTGAAGATATCAGCTAATTG
8739514 ATGCAAGGTATTAACATATTCAAGCACAATATCAAGCCT
196 ATGCAAGGTATTAACATATTCAAGCACAATATCAAGCCT
* *
8739553 ATTCAAGCATGCATTATACAATCATGCACAAACCACAGAAAAATTTAGATAAACACATATTTGAT
1 ATTCAAGCATACATTATACAATCATGCACAAACCACAAAAAAATTTAGATAAACACATATTTGAT
*
8739618 CAATCAATAGTGCACTATTCATCATAACATCAAGAAATTCACTTCAAGGAACATTAATCATACCA
66 CAATCAATAATGCACTATTCATCATAACATCAAGAAATTCACTTCAAGGAACATTAATCATACCA
8739683 AGTTCACCTCTAATTACATAAAATTTATCCTTATCAAGAGGTTTTGTGAAGATATCAGCTAATTG
131 AGTTCACCTCTAATTACATAAAATTTATCCTTATCAAGAGGTTTTGTGAAGATATCAGCTAATTG
8739748 ATGCAAGGTATTAACATATTCAAGCACAATATCA
196 ATGCAAGGTATTAACATATTCAAGCACAATATCA
8739782 CCTTTTTGAA
Statistics
Matches: 221, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
234 221 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.30
Consensus pattern (234 bp):
ATTCAAGCATACATTATACAATCATGCACAAACCACAAAAAAATTTAGATAAACACATATTTGAT
CAATCAATAATGCACTATTCATCATAACATCAAGAAATTCACTTCAAGGAACATTAATCATACCA
AGTTCACCTCTAATTACATAAAATTTATCCTTATCAAGAGGTTTTGTGAAGATATCAGCTAATTG
ATGCAAGGTATTAACATATTCAAGCACAATATCAAGCCT
Found at i:8741331 original size:19 final size:20
Alignment explanation
Indices: 8741293--8741332 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
8741283 ATACCTTATT
8741293 TCTCTATGATGATTTGGCTC
1 TCTCTATGATGATTTGGCTC
8741313 TCTCTATG-TG-TTGTGGCTC
1 TCTCTATGATGATT-TGGCTC
8741332 T
1 T
8741333 TATAGAAACT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.11
19 9 0.47
20 8 0.42
ACGTcount: A:0.10, C:0.20, G:0.23, T:0.47
Consensus pattern (20 bp):
TCTCTATGATGATTTGGCTC
Found at i:8745891 original size:21 final size:20
Alignment explanation
Indices: 8745866--8745924 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 20
8745856 GGCCAACAAA
8745866 AATTATCAAAATTATATTAAT
1 AATTATCAAAATTATATT-AT
8745887 AATTA-CTAAAATTATATTAT
1 AATTATC-AAAATTATATTAT
8745907 AAGTTATCAAAATTATAT
1 AA-TTATCAAAATTATAT
8745925 CGAAGGTTAC
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
20 5 0.14
21 29 0.83
22 1 0.03
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (20 bp):
AATTATCAAAATTATATTAT
Found at i:8746767 original size:2 final size:2
Alignment explanation
Indices: 8746760--8746794 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8746750 TTGTCTCCTG
8746760 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8746795 TTCCAAATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:8748709 original size:12 final size:12
Alignment explanation
Indices: 8748692--8748716 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8748682 TAATTTTTGA
8748692 TTTTTTTTACTT
1 TTTTTTTTACTT
8748704 TTTTTTTTACTT
1 TTTTTTTTACTT
8748716 T
1 T
8748717 AACTTCTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTTACTT
Found at i:8749082 original size:9 final size:9
Alignment explanation
Indices: 8749068--8749092 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8749058 AATTAACAAA
8749068 AAATAAATT
1 AAATAAATT
8749077 AAATAAATT
1 AAATAAATT
8749086 AAATAAA
1 AAATAAA
8749093 AGATAAGGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (9 bp):
AAATAAATT
Found at i:8756826 original size:15 final size:15
Alignment explanation
Indices: 8756808--8756836 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8756798 TATAATAAAT
8756808 TTTTATTTAATTTAA
1 TTTTATTTAATTTAA
8756823 TTTTATTTAATTTA
1 TTTTATTTAATTTA
8756837 TTAATTTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTATTTAATTTAA
Found at i:8756876 original size:13 final size:14
Alignment explanation
Indices: 8756828--8756892 Score: 71
Period size: 13 Copynumber: 4.8 Consensus size: 14
8756818 TTTAATTTTA
*
8756828 TTTAATTTATTAAT
1 TTTAATATATTAAT
* *
8756842 TTTAAAATTTTAAT
1 TTTAATATATTAAT
*
8756856 TTTTATATATT-AT
1 TTTAATATATTAAT
*
8756869 TTTAATATA-AAAT
1 TTTAATATATTAAT
8756882 TTTAATATATT
1 TTTAATATATT
8756893 TAAATAAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
13 21 0.52
14 19 0.47
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTAATATATTAAT
Found at i:8756904 original size:33 final size:32
Alignment explanation
Indices: 8756844--8756925 Score: 96
Period size: 33 Copynumber: 2.5 Consensus size: 32
8756834 TTATTAATTT
* *
8756844 TAAAATTTTAATTTTTATATATTATTTTAATA
1 TAAAATTTTAATTTTTAAATATAATTTTAATA
*
8756876 TAAAATTTTAATATATTTAAATA-AATTTTGATA
1 TAAAATTTTAAT-T-TTTAAATATAATTTTAATA
8756909 TAAAATTATT-ATTTTTA
1 TAAAATT-TTAATTTTTA
8756926 TTTAATAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
31 4 0.09
32 13 0.30
33 18 0.41
34 9 0.20
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (32 bp):
TAAAATTTTAATTTTTAAATATAATTTTAATA
Found at i:8757323 original size:233 final size:234
Alignment explanation
Indices: 8757068--8757520 Score: 585
Period size: 236 Copynumber: 1.9 Consensus size: 234
8757058 TGATTTTATC
* *
8757068 GAATAAAAAAATCGATTCAAACTAAATCAAATACTAAAATTTTGAATCAA-TTTTTTA-TTTTTT
1 GAATAAAAAAACCGATTCAAACTAAATCAAATACTAAAACTTTGAATCAATTTTTTTATTTTTTT
* * ** * *
8757131 -ATTTTAAAATTAATTCAAATTAAATCAAATATTACGA-TTTTAAATCAATTTTTATTTTTTTTC
66 AATTTTAAAAATAATCCAAACCAAATCAAATACTA-GATTTTTAAATCAATTTTT-TATTTTTTC
**** **
8757194 AACTT-TTTCTCACCACATGTATTCCATGTGATTTGATTCTTTTT-ATTTTTTATCTTTTGATTC
129 AACTTCTTTCTCACCACATGTATTCCACACAATTTGATT-TTTTTAATTTTTTATCTTTCAATTC
8757257 AAAATTCGATCCAAATCTACTATATATATTTAAAATTTGAATT
193 AAAATTCGATCCAAATCTA-TATATATATTTAAAATTTGAATT
*
8757300 GAATAAAAAAAACCGATTCAAACTAAATCAAATACTAAAGCTTTGAATCAATTTTTTTATTTTTT
1 GAAT-AAAAAAACCGATTCAAACTAAATCAAATACTAAAACTTTGAATCAATTTTTTTATTTTTT
* * * *
8757365 TAATTTTAAAAATGATCCAAACCAAATCAAATACTATATTTTTGAATTAATTTTTTATTTTTTCA
65 TAATTTTAAAAATAATCCAAACCAAATCAAATACTAGATTTTTAAATCAATTTTTTATTTTTTCA
* * *
8757430 ATTTCTTTCTCACCACCTGTATTCCCCACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAA
130 ACTTCTTTCTCACCACATGTATTCCACACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAA
* ** *
8757495 AATTTGATCTGAATTTATATATATAT
195 AATTCGATCCAAATCTATATATATAT
8757521 ATATTTAATA
Statistics
Matches: 188, Mismatches: 26, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
232 4 0.02
233 43 0.23
234 7 0.04
235 33 0.18
236 101 0.54
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (234 bp):
GAATAAAAAAACCGATTCAAACTAAATCAAATACTAAAACTTTGAATCAATTTTTTTATTTTTTT
AATTTTAAAAATAATCCAAACCAAATCAAATACTAGATTTTTAAATCAATTTTTTATTTTTTCAA
CTTCTTTCTCACCACATGTATTCCACACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAAA
ATTCGATCCAAATCTATATATATATTTAAAATTTGAATT
Found at i:8757442 original size:236 final size:240
Alignment explanation
Indices: 8757023--8759396 Score: 1003
Period size: 246 Copynumber: 9.6 Consensus size: 240
8757013 TTCAATTCAA
* * *
8757023 ATCT-AATATATATATATATATATAATATTTAAATTTGATTT-TATCGAAT-AAAAAAATCGATT
1 ATCTCAATATATATATATATAT-TAATATTCAAA--T-ATTTGAATCGAATAAAAAAAAACGATT
* * *
8757085 CAAACTAAATCAAATACTAAAATTTTGAATCAA-TTTTTTA-TTTTTT-ATTTTAAAATTAATTC
62 CAAACTAAATCAAATACT-AAA-TTTGAATCAATTTTTTTATTTTTTTAATTTTAAAAATGATCC
** * * * * * *
8757147 AAATTAAATCAAATATTACGATTTTAAATCAATTTTTATTTTTTTTCAACTTTTTCTCACCACAT
125 AAACCAAATCAAATACTA-TATTTTGAATTAATTTTT-TATTTTTTCAATTTTTTCTCACCACAT
**** **
8757212 GTATTCCATGTGATTTGATTCTTTTT-ATTTTTTATCTTTTGATTCAAAATTCG
188 GTATTCCACACAATTTGATT-TTTTTAATTTTTTATCTTTCAATTCAAAATTCG
* * * *
8757265 ATC-CAA-ATCTA-CTATATA-T-AT-TT-AAA-ATTTGAATTGAATAAAAAAAACCGATTCAAA
1 ATCTCAATATATATATATATATTAATATTCAAATATTTGAATCGAATAAAAAAAAACGATTCAAA
8757322 CTAAATCAAATACTAAAGCTTTGAATCAATTTTTTTATTTTTTTAATTTTAAAAATGATCCAAAC
66 CTAAATCAAATACTAAA--TTTGAATCAATTTTTTTATTTTTTTAATTTTAAAAATGATCCAAAC
*
8757387 CAAATCAAATACTATATTTTTGAATTAATTTTTTATTTTTTCAATTTCTTTCTCACCACCTGTAT
129 CAAATCAAATACTATA-TTTTGAATTAATTTTTTATTTTTTCAATTT-TTTCTCACCACATGTAT
* *
8757452 TCCCCACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAAAATTTG
192 TCCACACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAAAATTCG
*
8757501 ATCTGAATTTATATATATATATATTTAATATTCAAATTTGATTTGAATCGAATAAAAAAAAAAAC
1 ATCTCAA--TATATATATATATA-TTAATATTCAAA--T-ATTTGAATCGAAT--AAAAAAAAAC
* * * * *
8757566 TAATCAAAACTAAATCTAATACTATAATTTCAAATCAATTTTTAATT-TTTTTTCAATTTTAAAA
58 GATTC-AAACTAAATCAAATACTA-AATTT-GAATCAATTTTT--TTATTTTTTTAATTTTAAAA
* * *
8757630 CTGATGCAAACCCAATCAAATACTATAATTTTGAATTAATTTTTTTTATTTTTTCAATTTTTTCT
118 ATGATCCAAACCAAATCAAATACTAT-ATTTTGAATTAA--TTTTTTATTTTTTCAATTTTTTCT
* * * * * * *
8757695 CACCTCCTATTTTCCTCATAAATTGTTTTTCTTTACTTTTTTTAGATTTTTTATCTTTCAATTCA
180 CACCACATGTATTCCACA-CAA-------T-TTGA-TTTTTTTA-ATTTTTTATCTTTCAATTCA
*
8757760 AAATTTG
234 AAATTCG
* * *
8757767 ATAC-GAATTAAATATATATATATATTTAATATTCGAATTTGATTCGAATCGAATAAGAAAAAAA
1 AT-CTCAA-T--ATATATATATATA-TTAATATTC-AA-AT-ATTTGAATCGAATAA-AAAAAAA
* * * * *
8757831 TTGATCCAAACTAAATCGAATACTAAAATTTCAACTCAA-TTTTTTATTTTTTTAATTTTCAAAA
57 -CGATTCAAACTAAATCAAATACT-AAATTTGAA-TCAATTTTTTTATTTTTTTAATTTTAAAAA
* ** * * *
8757895 TAATTTAAATCAAGTCAAATATTATGATTTTG----AA----TT-TTTTTTCAATTTTTTTCTCA
119 TGATCCAAACCAAATCAAATACTAT-ATTTTGAATTAATTTTTTATTTTTTCAA-TTTTTTCTCA
* * * * *
8757951 CCACCTTTATTCCCCACGATTTGATTTTTTTTAA-TTTTTACCTTTCAATTCAAAATTCG
182 CCACATGTATTCCACACAATTTGA-TTTTTTTAATTTTTTATCTTTCAATTCAAAATTCG
* * * * *
8758010 ATCTGAATTTA-ATATATATATTTAATATTCGAATTTGATTCGAATTGAATAAGAAAAAAACTGA
1 ATCTCAATATATATATATATA-TTAATATTC-AA-AT-ATTTGAATCGAATAA-AAAAAAAC-GA
* ** * *
8758074 -TCAAAACTAAACCGGATACTAAAATTTCGAATCAA-TTTTTTATTTTTTTAATATTAAAATTGA
60 TTC-AAACTAAATCAAATACT-AAATTT-GAATCAATTTTTTTATTTTTTTAATTTTAAAAATGA
8758137 TCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTT-TATTTTTCAATTTTTTCTCACCA
122 TCCAAACCAAATCAAATACTAT-ATTTTGAATTAATTTTTTAT-TTTTTCAATTTTTTCTCACCA
* * * * *
8758201 TC-TGT-TTTC-CTC---GTGA-TTTTTT--TTTTTTATCTTTCGATT-TAAATTCG
185 -CATGTATTCCACACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAAAATTCG
* *
8758248 ATCCGAATCTAATATATATATATATATATATATATTTAATATTTAAATTTGATCCAAATCAAATG
1 AT-C---TC-AATATATATATATATAT-TA-ATATTCAA-A--T--ATTTG-----AATCGAAT-
* ** * * * * * * *
8758313 AGAAAAAAATTAATCTAAACTAAATCAAATGCAAAAATTTAAAAACAA-ATTTTTA-TTTTTCAA
48 AAAAAAAAACGATTC-AAACTAAATCAAATAC-TAAATTT-GAATCAATTTTTTTATTTTTTTAA
* ** * *
8758376 -TTTAAAAATAATTTAAATCAAATCAAATACTATGATTTTG----AA---TCT-TTTTTTCAACT
110 TTTTAAAAATGATCCAAACCAAATCAAATACTAT-ATTTTGAATTAATTTTTTATTTTTTCAA--
* * * *
8758432 TTTTTTCTCACCACCTGTATTCC-CAGCGATTCGATTTTTTTTTAAAATTTTTTATCTTTCGATT
172 TTTTTTCTCACCACATGTATTCCACA-CAATTTGA--TTTTTTT--AATTTTTTATCTTTCAATT
* *
8758496 TAAAATTCA
232 CAAAATTCG
* * * * ** * **
8758505 ATCTGAATTTA-ATATATATA-TAATATTTGAATTTGATTCAAATTGAATAAAAAAAATTTGA-T
1 ATCTCAATATATATATATATATTAATA-TTCAA-AT-ATTTGAATCGAATAAAAAAAA-ACGATT
* ** * *
8758567 CAAAACTAAACCAGGTACTAAAATTTCAAATCAA----TTT-TTTTTTTAATTTTAAAACTGATC
62 C-AAACTAAATCAAATACT-AAATTT-GAATCAATTTTTTTATTTTTTTAATTTTAAAAATGATC
* * * * * * *
8758627 CAAACTAAATTAAATACTGTAATTTTAAATTAATTTTTTTATTTTTACAA-TTTTTCTTACGATC
124 CAAACCAAATCAAATACTAT-ATTTTGAATTAA-TTTTTTATTTTTTCAATTTTTTCTCACCA-C
* * *** *
8758691 -TGTTTTCCTCGTGATTTGTTTTTTTTCAGATTTTTTTATCTTTCAATTCAAAATTCAATCG
186 ATGTATTCCACACAATTTGATTTTTTT-A-A-TTTTTTATCTTTCAATTCAAAA-T---TCG
* * *
8758752 AAATCTAATATATATATATATATATATATAATATTCGAAT-TTGATCCGAATCAAATAAGAAAAA
1 --ATCT--CA-ATATATATATATATAT-TAATATTCAAATATT--T--GAATCGAAT-A-AAAAA
** * * * * * *
8758816 AAATTTATCCATACTAAATCGAATTCTAAAATTTCAAATCAA--TTTTTA-TTTTTCAATTTTAA
54 AAA-CGATTCAAACTAAATCAAATACT-AAATTT-GAATCAATTTTTTTATTTTTTTAATTTT-A
** ** * *
8758878 AAAAT-ATTTAAATTAAATCAAATACTACGATTTTG----AA--TCTT-TTTTTTCAACTTTTTT
115 AAAATGATCCAAACCAAATCAAATACTA-TATTTTGAATTAATTTTTTATTTTTTCAA-TTTTTT
* * *** * * * * *
8758935 CTCACCACTTGTATTCCCCGTGATTTGATTTTTTTTTAATCTTTTATCGTTCGATTTAGAATTCG
178 CTCACCACATGTATTCCACACAATTTGA--TTTTTTTAATTTTTTATCTTTCAATTCAAAATTCG
* * * * *
8759000 ATCTGATTTTAATATATATATATATATAATATTCGAAT-TTGACTCGAATTGAATATAAAAAAAT
1 ATCTCA--AT-ATATATATATATAT-TAATATTCAAATATT---T-GAATCGAATA-AAAAAAAA
* * ** * *
8759064 TGA-TCAAAACTAAATCGAATACTAAATTTTTGAATCAA-TTTTCAATTTTTTCAATTTTAAAAC
57 CGATTC-AAACTAAATCAAATACTAAA--TTTGAATCAATTTTTTTATTTTTTTAATTTTAAAAA
* * *
8759127 TGCTCCAAATCAAATCAAATACTATAAATTTGAATTAATTTTTTTATTTTTTTCAATTTTTTCTC
119 TGATCCAAACCAAATCAAATACTAT-ATTTTGAATTAA-TTTTTTA-TTTTTTCAATTTTTTCTC
* * * * * * * *
8759192 ACCATC-TGTTTTCCTCATGATTTTTTTTATTTTTTTAAATTTTTATCTTTCAATTTAAAATTTG
181 ACCA-CATGTATTCCACA-CA---ATTTGATTTTTTTAATTTTTTATCTTTCAATTCAAAATTCG
** * ***
8759256 ATCAAAATTTA-ATATATATATTCAATATTC-AA-ATTTG-ATCCGAATAAAAAAAATTAATTCA
1 ATCTCAATATATATATATATATT-AATATTCAAATATTTGAAT-CGAATAAAAAAAAACGATTCA
* * * * * * **
8759317 TACAAAATCAAATTCTAAAATTTTAAATTAA-TTTTTTATTTTTTTAATTTTAAAAATAATTTAA
64 AACTAAATCAAATACT-AAA-TTTGAATCAATTTTTTTATTTTTTTAATTTTAAAAATGATCCAA
**
8759381 ATTAAATCAAATACTA
127 ACCAAATCAAATACTA
8759397 CGATTTTTTT
Statistics
Matches: 1675, Mismatches: 274, Indels: 362
0.72 0.12 0.16
Matches are distributed among these distances:
231 4 0.00
232 9 0.01
233 40 0.02
234 7 0.00
235 27 0.02
236 98 0.06
237 14 0.01
238 41 0.02
239 138 0.08
240 53 0.03
241 19 0.01
242 29 0.02
243 65 0.04
244 80 0.05
245 48 0.03
246 166 0.10
247 45 0.03
248 16 0.01
249 13 0.01
250 47 0.03
251 34 0.02
252 112 0.07
253 82 0.05
254 102 0.06
255 52 0.03
256 73 0.04
257 43 0.03
258 5 0.00
259 36 0.02
260 7 0.00
263 3 0.00
264 42 0.03
265 18 0.01
266 64 0.04
267 41 0.02
268 2 0.00
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (240 bp):
ATCTCAATATATATATATATATTAATATTCAAATATTTGAATCGAATAAAAAAAAACGATTCAAA
CTAAATCAAATACTAAATTTGAATCAATTTTTTTATTTTTTTAATTTTAAAAATGATCCAAACCA
AATCAAATACTATATTTTGAATTAATTTTTTATTTTTTCAATTTTTTCTCACCACATGTATTCCA
CACAATTTGATTTTTTTAATTTTTTATCTTTCAATTCAAAATTCG
Found at i:8758319 original size:252 final size:250
Alignment explanation
Indices: 8757778--8759224 Score: 813
Period size: 239 Copynumber: 5.8 Consensus size: 250
8757768 TACGAATTAA
* * * *
8757778 ATATATATATATATTTAATATTCGAATTTGATTCGAATCGAATAAGAAAAAAATTGATCCAAACT
1 ATATATATATATATTTAATATTCGAATTTGATCCGAATCAAATAAGAAAAAAATTAATCAAAACT
* * * * **
8757843 AAATCGAATACTAAAATTTCAACTCAATTTTTTATTTTTTTAATTTTCAAAATAATTTAAATCAA
66 AAATCGAATACTAAAATTTCAAATCAATTTTTTA-TTTTTCAA-TTTAAAAATGATCCAAATCAA
* * * *
8757908 GTCAAATATTATGATTTTG----AA----TTT-TTTTTCAATTTTTTTCTCACCACCT-TTATTC
129 ATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTCAA-TTTTTTCTCACCATCTGTT-TTC
* ** * * * * * *
8757963 CCCACGATTTGATTTTTTTTAATTTTTAC-CTTTCAATTCAAAATTCG-ATC---T-GA-AT-T
192 CTCGTGATTT--TTTTTTTTTATCTTT-CGATTTAAATTC--AATCCGAATCTAATATATATAT
* ** * *
8758019 -TA-ATATATATATTTAATATTCGAATTTGATTCGAATTGAATAAGAAAAAAACTGATCAAAACT
1 ATATATATATATATTTAATATTCGAATTTGATCCGAATCAAATAAGAAAAAAATTAATCAAAACT
* * * * * *
8758082 AAACCGGATACTAAAATTTCGAATCAATTTTTTATTTTTTTAATATTAAAATTGATCCAAACCAA
66 AAATCGAATACTAAAATTTCAAATCAATTTTTTA-TTTTTCAAT-TTAAAAATGATCCAAATCAA
8758147 ATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTCAATTTTTTCTCACCATCTGTTTTCCT
129 ATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTCAATTTTTTCTCACCATCTGTTTTCCT
*
8758212 CGTGATTTTTTTTTTTTATCTTTCGATTTAAATTCGATCCGAATCTAATATATATAT
194 CGTGATTTTTTTTTTTTATCTTTCGATTTAAATTCAATCCGAATCTAATATATATAT
** * * *
8758269 ATATATATATATATTTAATATTTAAATTTGATCCAAATCAAATGAGAAAAAAATTAATCTAAACT
1 ATATATATATATATTTAATATTCGAATTTGATCCGAATCAAATAAGAAAAAAATTAATCAAAACT
* * * * * * * **
8758334 AAATCAAATGCAAAAATTTAAAAACAAATTTTTATTTTTCAATTTAAAAATAATTTAAATCAAAT
66 AAATCGAATACTAAAATTTCAAATCAATTTTTTATTTTTCAATTTAAAAATGATCCAAATCAAAT
* * * *
8758399 CAAATACTATGATTTTG----AA---TCTT-TTTTTCAACTTTTTTTCTCACCACCTGTATTCCC
131 CAAATACTATAATTTTGAATTAATTTTTTTATTTTTCAA--TTTTTTCTCACCATCTGT-TTTCC
* * *
8758456 AGCGATTCGATTTTTTTTTAAAATTTTTTATCTTTCGATTTAAAATTCAATCTGAATTTAATATA
193 -TCG--T-GA---TTTTTT----TTTTTTATCTTTCGATTT-AAATTCAATCCGAATCTAATATA
8758521 TATAT
246 TATAT
* * * ** ** ** * * * *
8758526 A-ATAT-T-TGA-ATTT--GATTC-AAATTGAAT--AAAAAAAATTTGATCAAAACTAAAC-CAG
1 ATATATATAT-ATATTTAATATTCGAATTTG-ATCCGAATCAAATAAGAAAAAAATTAATCAAAA
* * *
8758581 GT--A-CTAA-A-----ATTTCAAATCAA-TTTTT-TTTTT-AATTTTAAAACTGATCCAAA-CT
64 CTAAATCGAATACTAAAATTTCAAATCAATTTTTTATTTTTCAA-TTTAAAAATGATCCAAATC-
* * * * *
8758633 AAATTAAATACTGTAATTTTAAATTAATTTTTTTATTTTTACAA-TTTTTCTTACGATCTGTTTT
127 AAATCAAATACTATAATTTTGAATTAATTTTTTTATTTTT-CAATTTTTTCTCACCATCTGTTTT
* * ** * * * *
8758697 CCTCGTGATTTGTTTTTTTTCAGATTTTTTTATCTTTCAATTCAAAATTC-AATCGAAATCTAAT
191 CCTCGTGATTT-TTTTTTTT--TATCTTTCGA--TTTAAATTC--AATCCGAATC-TAATAT-AT
8758761 ATAT
247 ATAT
* * * *
8758765 ATATATATATATATATAATATTCGAATTTGATCCGAATCAAATAAGAAAAAAAATTTATCCATAC
1 ATATATATATATATTTAATATTCGAATTTGATCCGAATCAAATAAG-AAAAAAATTAATCAAAAC
* ** *
8758830 TAAATCGAATTCTAAAATTTCAAATCAA-TTTTTATTTTTCAATTTTAAAAAAT-ATTTAAATTA
65 TAAATCGAATACTAAAATTTCAAATCAATTTTTTATTTTTCAA-TTT-AAAAATGATCCAAATCA
** * *
8758893 AATCAAATACTACGATTTTG----AA--TCTTT-TTTTTCAACTTTTTTCTCACCA-CTTGTATT
128 AATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTCAA-TTTTTTCTCACCATC-TGTTTT
* ** * * * *
8758950 CCCCGTGATTTGATTTTTTTTTAATCTTTTATCG-TTCGATTTAGAATTCG-ATCTGAT-T-T-T
191 CCTCGTGATTT--TTTTTTTTT-ATC--TT-TCGATTTAAATT-CAATCCGAATCTAATATATAT
8759010 A-
249 AT
* ** * *
8759011 ATATATATATATATATAATATTCGAATTTGA-CTCGAATTGAAT-ATAAAAAAATTGATCAAAAC
1 ATATATATATATATTTAATATTCGAATTTGATC-CGAATCAAATAAGAAAAAAATTAATCAAAAC
* ** ** * *
8759074 TAAATCGAATACTAAATTTTTGAATCAATTTTCAATTTTTTCAATTTTAAAACTGCTCCAAATCA
65 TAAATCGAATACTAAAATTTCAAATCAATTTTTTA-TTTTTCAA-TTTAAAAATGATCCAAATCA
*
8759139 AATCAAATACTATAAATTTGAATTAATTTTTTTATTTTTTTCAATTTTTTCTCACCATCTGTTTT
128 AATCAAATACTATAATTTTGAATTAATTTTTTTA--TTTTTCAATTTTTTCTCACCATCTGTTTT
*
8759204 CCTCATGATTTTTTTTATTTT
191 CCTCGTGATTTTTTTT-TTTT
8759225 TTTAAATTTT
Statistics
Matches: 929, Mismatches: 170, Indels: 202
0.71 0.13 0.16
Matches are distributed among these distances:
233 5 0.01
235 6 0.01
236 8 0.01
237 12 0.01
238 43 0.05
239 141 0.15
240 17 0.02
241 2 0.00
242 16 0.02
243 13 0.01
244 80 0.09
245 44 0.05
246 93 0.10
247 43 0.05
248 14 0.02
249 6 0.01
250 55 0.06
251 23 0.02
252 110 0.12
253 40 0.04
254 40 0.04
255 15 0.02
256 23 0.02
257 43 0.05
258 5 0.01
259 27 0.03
260 5 0.01
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (250 bp):
ATATATATATATATTTAATATTCGAATTTGATCCGAATCAAATAAGAAAAAAATTAATCAAAACT
AAATCGAATACTAAAATTTCAAATCAATTTTTTATTTTTCAATTTAAAAATGATCCAAATCAAAT
CAAATACTATAATTTTGAATTAATTTTTTTATTTTTCAATTTTTTCTCACCATCTGTTTTCCTCG
TGATTTTTTTTTTTTATCTTTCGATTTAAATTCAATCCGAATCTAATATATATAT
Found at i:8759719 original size:51 final size:51
Alignment explanation
Indices: 8759663--8759764 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 51
8759653 ATCAGCTCTA
* * *
8759663 ATCTTTTACTTTATAAAATAATAATT-TTTTA-TTTACTTAAAATTTTATTTT
1 ATCTTTTACATTATAAAATAACAATTATTTTATTTTA-TT-AAAGTTTATTTT
*
8759714 ATCTTTTACATTATAAAATAACATTTATTTTATTTTATTAAAGTTTATTTT
1 ATCTTTTACATTATAAAATAACAATTATTTTATTTTATTAAAGTTTATTTT
8759765 TTGTTTTTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
51 34 0.76
52 7 0.16
53 4 0.09
ACGTcount: A:0.35, C:0.06, G:0.01, T:0.58
Consensus pattern (51 bp):
ATCTTTTACATTATAAAATAACAATTATTTTATTTTATTAAAGTTTATTTT
Found at i:8765945 original size:22 final size:24
Alignment explanation
Indices: 8765905--8765948 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
8765895 CTTTAATTGT
8765905 TCAAATGAAATAACATTTATTTAA
1 TCAAATGAAATAACATTTATTTAA
8765929 TCAAA-GAAAT-ACATTTATTT
1 TCAAATGAAATAACATTTATTT
8765949 CAAATAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 5 0.25
24 5 0.25
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (24 bp):
TCAAATGAAATAACATTTATTTAA
Found at i:8766732 original size:23 final size:23
Alignment explanation
Indices: 8766702--8766746 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
8766692 TAATTCTTAC
8766702 ATAGTTTTTTTATTGATTTTATT
1 ATAGTTTTTTTATTGATTTTATT
8766725 ATAGTTTTTTTATTGATTTTAT
1 ATAGTTTTTTTATTGATTTTAT
8766747 ATATTAATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.09, T:0.69
Consensus pattern (23 bp):
ATAGTTTTTTTATTGATTTTATT
Found at i:8767990 original size:46 final size:47
Alignment explanation
Indices: 8767922--8768014 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 47
8767912 ACACATATGC
*
8767922 AACACTTATCACAATAATCTACAATCTTTTTGCAAATACTTAATTCA
1 AACACATATCACAATAATCTACAATCTTTTTGCAAATACTTAATTCA
* *
8767969 AACACATATCA-AATAATCTACAATCTTTTTTCAAGTACTTAATTCA
1 AACACATATCACAATAATCTACAATCTTTTTGCAAATACTTAATTCA
8768015 CAAACAATCT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
46 33 0.77
47 10 0.23
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.37
Consensus pattern (47 bp):
AACACATATCACAATAATCTACAATCTTTTTGCAAATACTTAATTCA
Found at i:8770166 original size:24 final size:24
Alignment explanation
Indices: 8770130--8770176 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
8770120 TTTTCTTTTA
*
8770130 AATTATATTTATAATTATTAATATT
1 AATTATATTTATAATCA-TAATATT
8770155 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
8770177 GATATGGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.29
24 11 0.52
25 4 0.19
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:8773004 original size:44 final size:44
Alignment explanation
Indices: 8772954--8773042 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
8772944 AAATCAATGG
8772954 CATGCTTAACGACAAAAAGTTGAAATACAAAAAATAAAAAATAA
1 CATGCTTAACGACAAAAAGTTGAAATACAAAAAATAAAAAATAA
* *
8772998 CATGCTTAACGACAGAAAGTTGAAATATAAAAAATAAAAAATAA
1 CATGCTTAACGACAAAAAGTTGAAATACAAAAAATAAAAAATAA
8773042 C
1 C
8773043 TTTGAGAGTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.60, C:0.11, G:0.10, T:0.19
Consensus pattern (44 bp):
CATGCTTAACGACAAAAAGTTGAAATACAAAAAATAAAAAATAA
Found at i:8782575 original size:42 final size:42
Alignment explanation
Indices: 8782516--8782647 Score: 185
Period size: 42 Copynumber: 3.1 Consensus size: 42
8782506 CTCTCCTGCG
*
8782516 TCATCCCCTGGTTACAGCCCATCATCTCCTGGATATAGTCCT
1 TCATCTCCTGGTTACAGCCCATCATCTCCTGGATATAGTCCT
8782558 TCATCTCCTGGTTACAGCCCATCATCTCCTGGATATAGTCCT
1 TCATCTCCTGGTTACAGCCCATCATCTCCTGGATATAGTCCT
* * * * *
8782600 TCATCTCCCGGTTACAGTCC-TACCTCTCCTGGTTACAGTCCT
1 TCATCTCCTGGTTACAGCCCAT-CATCTCCTGGATATAGTCCT
*
8782642 ACATCT
1 TCATCT
8782648 AGTCCTTCAT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
41 1 0.01
42 81 0.99
ACGTcount: A:0.18, C:0.36, G:0.14, T:0.33
Consensus pattern (42 bp):
TCATCTCCTGGTTACAGCCCATCATCTCCTGGATATAGTCCT
Found at i:8782638 original size:21 final size:21
Alignment explanation
Indices: 8782517--8782647 Score: 131
Period size: 21 Copynumber: 6.2 Consensus size: 21
8782507 TCTCCTGCGT
* *
8782517 CATCCCCTGGTTACAG-CCCA
1 CATCTCCTGGTTACAGTCCTA
* * *
8782537 TCATCTCCTGGATATAGTCCTT
1 -CATCTCCTGGTTACAGTCCTA
*
8782559 CATCTCCTGGTTACAG-CCCA
1 CATCTCCTGGTTACAGTCCTA
* * *
8782579 TCATCTCCTGGATATAGTCCTT
1 -CATCTCCTGGTTACAGTCCTA
*
8782601 CATCTCCCGGTTACAGTCCTA
1 CATCTCCTGGTTACAGTCCTA
*
8782622 CCTCTCCTGGTTACAGTCCTA
1 CATCTCCTGGTTACAGTCCTA
8782643 CATCT
1 CATCT
8782648 AGTCCTTCAT
Statistics
Matches: 87, Mismatches: 20, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
20 2 0.02
21 81 0.93
22 4 0.05
ACGTcount: A:0.18, C:0.36, G:0.14, T:0.32
Consensus pattern (21 bp):
CATCTCCTGGTTACAGTCCTA
Found at i:8782672 original size:21 final size:21
Alignment explanation
Indices: 8782648--8782701 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 21
8782638 TCCTACATCT
*
8782648 AGTCCTTCATCTCCCGGTTAC
1 AGTCCTACATCTCCCGGTTAC
* *
8782669 AGTCCTACCTCTCCTGGTTAC
1 AGTCCTACATCTCCCGGTTAC
8782690 AGTCCTACATCT
1 AGTCCTACATCT
8782702 AGAGGTGAGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.17, C:0.37, G:0.13, T:0.33
Consensus pattern (21 bp):
AGTCCTACATCTCCCGGTTAC
Found at i:8782675 original size:54 final size:54
Alignment explanation
Indices: 8782593--8782703 Score: 222
Period size: 54 Copynumber: 2.1 Consensus size: 54
8782583 CTCCTGGATA
8782593 TAGTCCTTCATCTCCCGGTTACAGTCCTACCTCTCCTGGTTACAGTCCTACATC
1 TAGTCCTTCATCTCCCGGTTACAGTCCTACCTCTCCTGGTTACAGTCCTACATC
8782647 TAGTCCTTCATCTCCCGGTTACAGTCCTACCTCTCCTGGTTACAGTCCTACATC
1 TAGTCCTTCATCTCCCGGTTACAGTCCTACCTCTCCTGGTTACAGTCCTACATC
8782701 TAG
1 TAG
8782704 AGGTGAGCAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.17, C:0.36, G:0.14, T:0.33
Consensus pattern (54 bp):
TAGTCCTTCATCTCCCGGTTACAGTCCTACCTCTCCTGGTTACAGTCCTACATC
Found at i:8782789 original size:16 final size:17
Alignment explanation
Indices: 8782768--8782802 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8782758 GTCATTTCGG
*
8782768 TTCGGTT-TAATCGGTT
1 TTCGGTTGTAATCGATT
8782784 TTCGGTTGTAATCGATT
1 TTCGGTTGTAATCGATT
8782801 TT
1 TT
8782803 AAGATCGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.14, C:0.11, G:0.23, T:0.51
Consensus pattern (17 bp):
TTCGGTTGTAATCGATT
Found at i:8783848 original size:33 final size:32
Alignment explanation
Indices: 8783790--8783869 Score: 83
Period size: 33 Copynumber: 2.5 Consensus size: 32
8783780 ATTAATTTTT
* *
8783790 AAATTTTAATTTTTATATATTATTTTAATACA
1 AAATTTTAATTTTTAAATATAATTTTAATACA
* *
8783822 AAATTTTAATATATTTAAATA-AATTTTGATATA
1 AAATTTTAAT-T-TTTAAATATAATTTTAATACA
8783855 AAATTATT-ATTTTTA
1 AAATT-TTAATTTTTA
8783870 TTTTATAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
31 4 0.10
32 11 0.27
33 17 0.41
34 9 0.22
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (32 bp):
AAATTTTAATTTTTAAATATAATTTTAATACA
Found at i:8784090 original size:62 final size:62
Alignment explanation
Indices: 8784024--8784142 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 62
8784014 AATCGAATAA
*
8784024 AAAATTGATTTAAACTAAACCAAATACTAAAATTTTGAATCAATTTTTTATTTTTTTATTTT
1 AAAATTGATTTAAACTAAACCAAATACTAAAATTTTAAATCAATTTTTTATTTTTTTATTTT
* * * ** *
8784086 AAAATTGATTTAAATTAAATCAAATATTATGATTTTAAATTAATTTTTTATTTTTTT
1 AAAATTGATTTAAACTAAACCAAATACTAAAATTTTAAATCAATTTTTTATTTTTTT
8784143 TCAATTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
62 50 1.00
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.51
Consensus pattern (62 bp):
AAAATTGATTTAAACTAAACCAAATACTAAAATTTTAAATCAATTTTTTATTTTTTTATTTT
Found at i:8784322 original size:62 final size:63
Alignment explanation
Indices: 8784249--8784367 Score: 170
Period size: 62 Copynumber: 1.9 Consensus size: 63
8784239 TTGAATAAAA
*
8784249 AAAAATTGATCCAAACTAAACCAAATACTA-AAGCTTTGAATCAATTTTTTATTTTTTAATTTT
1 AAAAATTGATCCAAACCAAACCAAATACTATAA-CTTTGAATCAATTTTTTATTTTTTAATTTT
* * * *
8784312 AAAAA-TGATCCAAACCAAATCAAATATTATAATTTTGAATCGATTTTTTATTTTTT
1 AAAAATTGATCCAAACCAAACCAAATACTATAACTTTGAATCAATTTTTTATTTTTT
8784368 TCAAAATTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
62 43 0.86
63 7 0.14
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.42
Consensus pattern (63 bp):
AAAAATTGATCCAAACCAAACCAAATACTATAACTTTGAATCAATTTTTTATTTTTTAATTTT
Found at i:8784815 original size:515 final size:507
Alignment explanation
Indices: 8784242--8786588 Score: 2824
Period size: 515 Copynumber: 4.6 Consensus size: 507
8784232 ATGTGAATTG
* * * * * *
8784242 AATAAAAAAAAATTGATCCAAACTAAACCAAATACTAAAGCTTT-GAATCAATTTTTTATTTTTT
1 AATAAAAAAAATTTG-TCCAAACTAAATCGAATACTAAA-ATTTCAAATCAAATTTTTATTTTTT
* ** * * **
8784306 AATTTTAAAAATGATCCAAACCAAATCAAATATTATAATTTTGAATCGATTTTTTATTTTTTTCA
64 AATTTTAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAAT--A---TTT-TTTTTTTCA
** * * ** *
8784371 AAATTTTTCTCACTACTTGTATTCCCCACAATTTGATTTTTTTTAATTTTTTATCTTTTAATTCA
123 ATTTTTTTCTCACCACTTGTATTCCCCACGATTTGATTTTTTTTAATTTTTTATCTTTCGATTTA
* * **
8784436 AAATTCGATCTGAATTTAATATATATATATATATATTTAATATTCAAAATTGATTTGAATTGAAT
188 AAATTCGATCTGAATTT-ATATATATATATATATATTTAATATTCGAATTTGATTCAAATTGAAT
* * * * * *
8784501 AAAAAAAAAACTAATCAAAACTAAATCCAACACTATAATTTCAAATTAATTTTTTATTTTTTTCA
252 AAGAAAAAAATTGATCAAAACTAAATCCAATACTAAAATTTCAAATCAATTTTTTA-TTTTTTCA
* *
8784566 ATTTTAAAACTGATCCAAACCCAATCAAATACTATAATTTTGAATTAATTTTTTT-TATTTTTCA
316 ATATTAAAACTGATCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTTTAT-TTTTTCA
** * *
8784630 ATTTTTTCTCAATACCTATTTTCCTCGTAATTTGTTTTTTTTTACTTTTTTT-AGATTTTTTATC
380 ATTTTTTCTCACCATCTATTTTCCTCGTAATTTGTTTTTTTTTA-TTTTTTTAAAATTTTTTATC
* * ** *
8784694 TTTCAATTCAAACTTTTATCCGACTCTAATATATATATTTAATATTCAAATTTAATCCGAATCA
444 TTTCGATTCAAAATTCGATCCGAATCTAATATATATATTTAATATTCAAATTTAATCCGAATCA
*
8784758 AATAAAAAAAATTTGTCCAAACTAAATTGAATACTAAAATTTCAAATCAAATTTTTATTTTTTTA
1 AATAAAAAAAATTTGTCCAAACTAAATCGAATACTAAAATTTCAAATCAAATTTTTA-TTTTTTA
* *
8784823 ATTTTAAAAATAATTTAAATCAAGTCAAATATTACGATTTTGAA-A-TTTTTTTTTCAATTTTTT
65 ATTTTAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATATTTTTTTTTTCAATTTTTT
* * * * * *
8784886 TCTCACCACCTATATTCCCCACGATTTGATTTTTTTTTTAA-TTTTTACCTTTAGATTCAAAATC
130 TCTCACCACTTGTATTCCCCACGATTTGA--TTTTTTTTAATTTTTTATCTTTCGATTTAAAATT
* * *
8784950 CGATCTGAATTTAATATATATATATATTTTTTTTTTTTTAATATTCAAATTTGATTCAAATTGAA
193 CGATCTGAATTT-ATATATATATATA------TATATTTAATATTCGAATTTGATTCAAATTGAA
* *
8785015 TAAGAAAAAAATTGATCAAAACTAAATCGAATACTAAAATTTCGAATCAATTTTTTATTTTTTCA
251 TAAGAAAAAAATTGATCAAAACTAAATCCAATACTAAAATTTCAAATCAATTTTTTATTTTTTCA
* *
8785080 ATATTAAAATTGATCCAAACCATATCAAATACTATAATTTTGAATTAATTTTTTTTATTTTTTCA
316 ATATTAAAACTGATCCAAACCAAATCAAATACTATAATTTTGAATTAA-TTTTTTTATTTTTTCA
* *
8785145 ATTTTTTCTCACCATCTGTTTTCCTCGTGATTTG-TTTTTTTTATTTTTTTAAAATTTTTTATCT
380 ATTTTTTCTCACCATCTATTTTCCTCGTAATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCT
* * * * * *
8785209 TTCGATTTAAAATCCGATCTGAATCTAATATATATATTTAATATTCGAATTTGATCTGAATCA
445 TTCGATTCAAAATTCGATCCGAATCTAATATATATATTTAATATTCAAATTTAATCCGAATCA
** * * * *
8785272 AATGAGAAAAAAATTAATCCAAACTAAATTGAATGCCAAAATTTCAAATCAAATTTTTATTTTTC
1 AAT-A-AAAAAAATTTGTCCAAACTAAATCGAATACTAAAATTTCAAATCAAATTTTTATTTTTT
*
8785337 GATTTTAAAAATAATTTAAATCAAATCAAATACTACGATTTTG-A-A-TTTTTTTTTCAACTTTT
64 AATTTTAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATATTTTTTTTTTCAA-TTTT
* ** **
8785399 TTTCTCACCACATGTATT-CCTGCGATTCAATTTTTTTTAATTTTTTATCTTTCGATTTAAAATT
128 TTTCTCACCACTTGTATTCCCCACGATTTGATTTTTTTTAATTTTTTATCTTTCGATTTAAAATT
* * *
8785463 CGATTTGAA-TT-TA-ATATATAT-T-TATTTAATATTTGAATTTAATTCAAATTGAATAAGAAA
193 CGATCTGAATTTATATATATATATATATATTTAATATTCGAATTTGATTCAAATTGAATAAGAAA
* *
8785523 AAAATTGATC-AAACTATA-CCGAATACTAAAATTTCAAATCAATTTTTTATTTTTTCAATTTTA
258 AAAATTGATCAAAACTAAATCC-AATACTAAAATTTCAAATCAATTTTTTATTTTTTCAATATTA
*
8785586 AAACTGATCCAAACTAAATCAAATACTATAATTTTGAATTAATTTTTTTA---TTT--A----TT
322 AAACTGATCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTTCAATTTTTT
* * * *
8785642 CTCACTATCTATTTTCCTCGTAATTTGTTTTTTTTTACTATTTTT-AGATTTTTTATCTTTCTAT
387 CTCACCATCTATTTTCCTCGTAATTTGTTTTTTTTTA-TTTTTTTAAAATTTTTTATCTTTCGAT
* *
8785706 TCAAAATTCGATCCGAATCTAATATATATATTTAATATTCAAATTTGA-CCGAATCG
451 TCAAAATTCGATCCGAATCTAATATATATATTTAATATTCAAATTTAATCCGAATCA
*
8785762 AATAAGAAAAAAATTGATCCAAACTAAATCGAATACTAAAATTTCAAATC-AA---TT-TTTTTT
1 AATAA-AAAAAATTTG-TCCAAACTAAATCGAATACTAAAATTTCAAATCAAATTTTTATTTTTT
* * * *
8785822 AATTTCAAAAATAATTTAAATCAAATCCAATACTACAATTTTG---ATTTTTTTTTTC-A-CTTT
64 AATTTTAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATATTTTTTTTTTCAATTTTT
* *
8785882 TTCTCACCACTTATATTCCCCACGATTTGATTTTTTTTAATTTTTTACCTTTCGATTTAAAATTC
129 TTCTCACCACTTGTATTCCCCACGATTTGATTTTTTTTAATTTTTTATCTTTCGATTTAAAATTC
* * * *
8785947 AATCTGAA--T-T-TA-ATATATATATATTTAACATTCGAATTTGATTCGAATTGAATAATAAAA
194 GATCTGAATTTATATATATATATATATATTTAATATTCGAATTTGATTCAAATTGAATAAGAAAA
* * **
8786007 AAACTGATCAAAACTAAA-CTAAATACTAAAATTTTGAATCAATTTTTTATTTTTTCAATATTAA
259 AAATTGATCAAAACTAAATC-CAATACTAAAATTTCAAATCAATTTTTTATTTTTTCAATATTAA
* **
8786071 AATTGATCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTTCAAAATTTTC
323 AACTGATCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTTCAATTTTTTC
* *
8786136 TCACCATCTATTTTCCTCGTGATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCTTTTGATTC
388 TCACCATCTATTTTCCTCGTAATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCTTTCGATTC
* *
8786201 AAAATTCGATCTGAATCTAATATATATATATATATATATATTTAATATTCGAATTTAATCCGAAT
453 AAAATTCGATCCGAATC-----------TA-ATATATATATTTAATATTCAAATTTAATCCGAAT
8786266 CA
506 CA
** * *
8786268 AATGAGAAAAAAATTAATCCAAACTAAATCAAATACTAAAATTTCAAATCAAATTTTTATTTTTC
1 AAT-A-AAAAAAATTTGTCCAAACTAAATCGAATACTAAAATTTCAAATCAAATTTTTATTTTTT
*
8786333 AATTTTAAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATCTTTTTTTTTTCAACTTT
64 AATTTT-AAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATATTTTTTTTTTCAA-TTT
* * *
8786398 TTTTCTCACTACTTGTATTCCCCACGATTCGATTTTTTTTTTATTTTTTATCTTTCGATTTAAAA
127 TTTTCTCACCACTTGTATTCCCCACGATTTGA-TTTTTTTTAATTTTTTATCTTTCGATTTAAAA
* *
8786463 TTCGATATGAATTTA-ATATATATATATATATTTAATATTTGAATTTGATTCAAATTGAATAAGA
191 TTCGATCTGAATTTATATATATATATATATATTTAATATTCGAATTTGATTCAAATTGAATAAGA
* *
8786527 AAAAAATTGATCAAAATTAAATCGAATACTAAAATTTCAAATCAATTTTTTTATTTTTTCAA
256 AAAAAATTGATCAAAACTAAATCCAATACTAAAATTTCAAATCAA-TTTTTTATTTTTTCAA
8786589 AAATTTCTTA
Statistics
Matches: 1587, Mismatches: 170, Indels: 140
0.84 0.09 0.07
Matches are distributed among these distances:
481 6 0.00
482 22 0.01
483 90 0.06
484 97 0.06
485 54 0.03
486 2 0.00
487 3 0.00
488 1 0.00
489 11 0.01
490 65 0.04
491 70 0.04
492 12 0.01
493 71 0.04
494 1 0.00
496 3 0.00
499 9 0.01
500 86 0.05
501 44 0.03
502 1 0.00
504 2 0.00
505 25 0.02
506 42 0.03
507 10 0.01
508 40 0.03
509 55 0.03
510 14 0.01
511 10 0.01
512 47 0.03
513 35 0.02
514 153 0.10
515 229 0.14
516 109 0.07
518 30 0.02
519 39 0.02
521 1 0.00
522 2 0.00
523 79 0.05
524 17 0.01
ACGTcount: A:0.37, C:0.12, G:0.05, T:0.46
Consensus pattern (507 bp):
AATAAAAAAAATTTGTCCAAACTAAATCGAATACTAAAATTTCAAATCAAATTTTTATTTTTTAA
TTTTAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATATTTTTTTTTTCAATTTTTTT
CTCACCACTTGTATTCCCCACGATTTGATTTTTTTTAATTTTTTATCTTTCGATTTAAAATTCGA
TCTGAATTTATATATATATATATATATTTAATATTCGAATTTGATTCAAATTGAATAAGAAAAAA
ATTGATCAAAACTAAATCCAATACTAAAATTTCAAATCAATTTTTTATTTTTTCAATATTAAAAC
TGATCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTTCAATTTTTTCTCA
CCATCTATTTTCCTCGTAATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCTTTCGATTCAAA
ATTCGATCCGAATCTAATATATATATTTAATATTCAAATTTAATCCGAATCA
Found at i:8785112 original size:63 final size:64
Alignment explanation
Indices: 8785022--8785146 Score: 171
Period size: 63 Copynumber: 2.0 Consensus size: 64
8785012 GAATAAGAAA
* *
8785022 AAAATTGATCAAAACTAAATCGAATACTAAAATTTCGAATCAA-TTTTTTATTTTTTCAATATT
1 AAAATTGATCAAAACCAAATCAAATACTAAAATTTCGAATCAATTTTTTTATTTTTTCAATATT
* * * * *
8785085 AAAATTGATCCAAACCATATCAAATACTATAATTTTGAATTAATTTTTTTTATTTTTTCAAT
1 AAAATTGATCAAAACCAAATCAAATACTAAAATTTCGAATCAA-TTTTTTTATTTTTTCAAT
8785147 TTTTTCTCAC
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
63 36 0.68
65 17 0.32
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.44
Consensus pattern (64 bp):
AAAATTGATCAAAACCAAATCAAATACTAAAATTTCGAATCAATTTTTTTATTTTTTCAATATT
Found at i:8786657 original size:203 final size:210
Alignment explanation
Indices: 8786431--8786805 Score: 505
Period size: 211 Copynumber: 1.8 Consensus size: 210
8786421 ACGATTCGAT
** * *
8786431 TTTTTTTTTATTTTTTATCTTTCGATTTAAAATTCGA-T-AT-GAAT-T-TA-ATATATATATAT
1 TTTTTTTAGATTTTTTATCTTTCGATTCAAAATTCAACTAATCGAATATATATATATATATATAT
** * ** *
8786490 ATATTTAATATTTGAATTTGATTCAAATTGAATAAGAAAAAAATTGATCAAAATTAAATCGAATA
66 ATATTTAATATTCAAATTTGATCCAAATCAAATAAG-AAAAAATTGATCAAAACTAAATCGAATA
8786555 CTAAAATTTCAAATC-AATTTTTTTATT-TTTTCAAAAATTTCTTACGATCTGTTTTCCTCGTGA
130 CTAAAATTTCAAATCAAATTTTTTTATTATTTTCAAAAATTTCTTACGATCTGTTTTCCTCGTGA
8786618 TTTGTTTTTTTTTATA
195 TTTGTTTTTTTTTATA
*
8786634 TTTTTTTAGATTTTTTATCTTTCGATTCAAAATTCAATCTAAATCTAATATATATATATATATAT
1 TTTTTTTAGATTTTTTATCTTTCGATTCAAAATTCAA-CT-AATCGAATATATATATATATATAT
* * * *
8786699 ATATATTTAATATTCAAATTTGATCCGAATCAAATAAGAAAAAATTTATCCATACTAAATCGAAT
64 ATATATTTAATATTCAAATTTGATCCAAATCAAATAAGAAAAAATTGATCAAAACTAAATCGAAT
* * *
8786764 TCTAAAATTTCAAATCAAATTTTTTTTTTATTTTTAAAAATT
129 ACTAAAATTTCAAATCAAATTTTTTTATTATTTTCAAAAATT
8786806 ATTTAAATTA
Statistics
Matches: 144, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
203 33 0.23
205 1 0.01
207 2 0.01
208 3 0.02
209 1 0.01
210 40 0.28
211 53 0.37
212 11 0.08
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.48
Consensus pattern (210 bp):
TTTTTTTAGATTTTTTATCTTTCGATTCAAAATTCAACTAATCGAATATATATATATATATATAT
ATATTTAATATTCAAATTTGATCCAAATCAAATAAGAAAAAATTGATCAAAACTAAATCGAATAC
TAAAATTTCAAATCAAATTTTTTTATTATTTTCAAAAATTTCTTACGATCTGTTTTCCTCGTGAT
TTGTTTTTTTTTATA
Found at i:8786936 original size:457 final size:462
Alignment explanation
Indices: 8786069--8786977 Score: 1384
Period size: 460 Copynumber: 2.0 Consensus size: 462
8786059 TTTCAATATT
* * ** * *
8786069 AAAATTGATCCAAACCAAATCAAATACTATAATTTTGAATTAATTTTTTTATTTTTTCAAAATTT
1 AAAATTGATCAAAACCAAATCAAATACTAAAATTTCAAATCAATTTTTTTATTTTTTCAAAAATT
*
8786134 TCTCACCATCTATTTTCCTCGTGATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCTTTTGAT
66 TCTCACCATCTATTTTCCTCGTGATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCTTTCGAT
* * *
8786199 TCAAAATTCGATCTGAATCTAATATATATATATATATATATATTTAATATTCGAATTTAATCCGA
131 TCAAAATTCAATCTAAATCTAATATATATATATATATATATATTTAATATTCAAATTTAATCCGA
*
8786264 ATCAAATGAGAAAAAAATTAATCCAAACTAAATCAAATACTAAAATTTCAAATCAAATTTTTATT
196 ATCAAATAAGAAAAAAATTAATCCAAACTAAATCAAATACTAAAATTTCAAATCAAATTTTTATT
8786329 TTTCAATTTTAAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATCTTTTTTTTTTCAA
261 TTT-AATTTTAAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATCTTTTTTTTTTCAA
* * * * ** *
8786394 CTTTTTTTCTCACTACTTGTATTCCCCACGATTCGATTTTTTTTTTATTTTTTATCTTTCGATTT
325 CTTTTTTTCTCACCACCTGTATTCCCCACGATTCAAATTTTTTTAAAATTTTTATCTTTCGATTT
8786459 AAAATTCGATATGAATTT-A-ATATATATATATATATTTAATATTTGAATTTGATTC-AAATTGA
390 AAAATTCGATATGAATTTAATATATATATATATATATTTAATATTTGAATTTGATTCGAAATTGA
8786521 ATAAGAAA
455 ATAAGAAA
** *
8786529 AAAATTGATCAAAATTAAATCGAATACTAAAATTTCAAATCAATTTTTTTATTTTTTCAAAAATT
1 AAAATTGATCAAAACCAAATCAAATACTAAAATTTCAAATCAATTTTTTTATTTTTTCAAAAATT
* * * * *
8786594 TCTTACGATCTGTTTTCCTCGTGATTTGTTTTTTTTTATATTTTTTTAGATTTTTTATCTTTCGA
66 TCTCACCATCTATTTTCCTCGTGATTTGTTTTTTTTTAT-TTTTTTAAAATTTTTTATCTTTCGA
*
8786659 TTCAAAATTCAATCTAAATCTAATATATATATATATATATATATATTTAATATTCAAATTTGATC
130 TTCAAAATTCAATCTAAATCT-A-ATATATATATATATATATATATTTAATATTCAAATTTAATC
* * * *
8786724 CGAATCAAATAAG-AAAAAATTTATCCATACTAAATCGAATTCTAAAATTTCAAATCAAATTTTT
193 CGAATCAAATAAGAAAAAAATTAATCCAAACTAAATCAAATACTAAAATTTCAAATCAAATTTTT
* * *
8786788 -TTTTT-ATTTTTAAAAATTATTTAAATTAAATCAAATACTACGATTTTGAATC-TTTTTTTTTC
258 ATTTTTAATTTTAAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATCTTTTTTTTTTC
* **
8786850 AA-TTTTTTTCTCACCACCTGTATTTCCCGTGATTCAAATTTTTTTAAAATTTTTATCTTTCGAT
323 AACTTTTTTTCTCACCACCTGTATTCCCCACGATTCAAATTTTTTTAAAATTTTTATCTTTCGAT
*
8786914 TTAAAATTCGATCTGAATTTAATATATATATATATATATTTAATATTTGAATTTGATTCGAAAT
388 TTAAAATTCGATATGAATTTAATATATATATATATATATTTAATATTTGAATTTGATTCGAAAT
8786978 ATTTAATATA
Statistics
Matches: 405, Mismatches: 38, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
457 71 0.18
458 13 0.03
459 80 0.20
460 96 0.24
461 46 0.11
462 48 0.12
463 51 0.13
ACGTcount: A:0.36, C:0.11, G:0.05, T:0.47
Consensus pattern (462 bp):
AAAATTGATCAAAACCAAATCAAATACTAAAATTTCAAATCAATTTTTTTATTTTTTCAAAAATT
TCTCACCATCTATTTTCCTCGTGATTTGTTTTTTTTTATTTTTTTAAAATTTTTTATCTTTCGAT
TCAAAATTCAATCTAAATCTAATATATATATATATATATATATTTAATATTCAAATTTAATCCGA
ATCAAATAAGAAAAAAATTAATCCAAACTAAATCAAATACTAAAATTTCAAATCAAATTTTTATT
TTTAATTTTAAAAAATAATTTAAATCAAATCAAATACTACGATTTTGAATCTTTTTTTTTTCAAC
TTTTTTTCTCACCACCTGTATTCCCCACGATTCAAATTTTTTTAAAATTTTTATCTTTCGATTTA
AAATTCGATATGAATTTAATATATATATATATATATTTAATATTTGAATTTGATTCGAAATTGAA
TAAGAAA
Found at i:8786988 original size:40 final size:41
Alignment explanation
Indices: 8786934--8787015 Score: 139
Period size: 40 Copynumber: 2.0 Consensus size: 41
8786924 ATCTGAATTT
*
8786934 AATATATATATATATATATTTAATATTTGAATTTGATTCGA
1 AATATATATATATATATATTTAATATTCGAATTTGATTCGA
*
8786975 AATATTTA-ATATATATATTTAATATTCGAATTTGATTCGA
1 AATATATATATATATATATTTAATATTCGAATTTGATTCGA
8787015 A
1 A
8787016 TTGAATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
40 32 0.82
41 7 0.18
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (41 bp):
AATATATATATATATATATTTAATATTCGAATTTGATTCGA
Found at i:8788347 original size:17 final size:17
Alignment explanation
Indices: 8788322--8788354 Score: 50
Period size: 16 Copynumber: 1.9 Consensus size: 17
8788312 TAAGAACAAA
8788322 AAAAGCAATG-TAAGAT
1 AAAAGCAATGTTAAGAT
8788338 AAAAGACAATGTTAAGA
1 AAAAG-CAATGTTAAGA
8788355 ACAATGCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 5 0.33
18 5 0.33
ACGTcount: A:0.58, C:0.06, G:0.18, T:0.18
Consensus pattern (17 bp):
AAAAGCAATGTTAAGAT
Found at i:8792161 original size:18 final size:18
Alignment explanation
Indices: 8792134--8792168 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
8792124 CTAAGAACAA
8792134 AAAAAGCAATG-TAAGAT
1 AAAAAGCAATGTTAAGAT
8792151 AAAAAGACAATGTTAAGA
1 AAAAAG-CAATGTTAAGA
8792169 ACAATGCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (18 bp):
AAAAAGCAATGTTAAGAT
Found at i:8803904 original size:13 final size:13
Alignment explanation
Indices: 8803886--8803910 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8803876 TTATATATTC
8803886 AAAAAAATAATTG
1 AAAAAAATAATTG
8803899 AAAAAAATAATT
1 AAAAAAATAATT
8803911 TAACTTACCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
AAAAAAATAATTG
Found at i:8807106 original size:22 final size:24
Alignment explanation
Indices: 8807066--8807109 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
8807056 CTTTAATTGT
8807066 TCAAATGAAATAACATTTATTTAA
1 TCAAATGAAATAACATTTATTTAA
8807090 TCAAA-GAAAT-ACATTTATTT
1 TCAAATGAAATAACATTTATTT
8807110 CAAATAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 5 0.25
24 5 0.25
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (24 bp):
TCAAATGAAATAACATTTATTTAA
Found at i:8809101 original size:46 final size:47
Alignment explanation
Indices: 8809039--8809131 Score: 134
Period size: 46 Copynumber: 2.0 Consensus size: 47
8809029 TGCCATATCC
* * **
8809039 AACACTTATCACAATAATCCACAATCTTTTTGTAAATACTTAATTCA
1 AACACATATCACAATAATCCACAATCTTTCTCCAAATACTTAATTCA
*
8809086 AACACATATCA-AATAATCTACAATCTTTCTCCAAATACTTAATTCA
1 AACACATATCACAATAATCCACAATCTTTCTCCAAATACTTAATTCA
8809132 TAAACAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 31 0.76
47 10 0.24
ACGTcount: A:0.42, C:0.23, G:0.01, T:0.34
Consensus pattern (47 bp):
AACACATATCACAATAATCCACAATCTTTCTCCAAATACTTAATTCA
Found at i:8809761 original size:10 final size:10
Alignment explanation
Indices: 8809746--8809773 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
8809736 TCCTGTATAT
8809746 ATGTTCAATC
1 ATGTTCAATC
8809756 ATGTTCAATC
1 ATGTTCAATC
8809766 ATGTTCAA
1 ATGTTCAA
8809774 CTATTCATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.18, G:0.11, T:0.39
Consensus pattern (10 bp):
ATGTTCAATC
Found at i:8811314 original size:24 final size:24
Alignment explanation
Indices: 8811276--8811322 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8811266 TTTTCTTTTA
* *
8811276 AATTATATTTGTAATTATTAATATT
1 AATTATATTTATAATCA-TAATATT
8811301 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
8811323 GATGTGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:8812750 original size:24 final size:24
Alignment explanation
Indices: 8812687--8812754 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
8812677 TCAATAATGT
* *
8812687 GAAAAAACAAATTTAACATATTAA
1 GAAAAAAAAAATTTAACCTATTAA
* *
8812711 GAAATAAAAACTTTAACCTATTAA
1 GAAAAAAAAAATTTAACCTATTAA
*
8812735 GAAAAAAAAAAGTTAACCTA
1 GAAAAAAAAAATTTAACCTA
8812755 CTAACCTATT
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.60, C:0.10, G:0.06, T:0.24
Consensus pattern (24 bp):
GAAAAAAAAAATTTAACCTATTAA
Found at i:8812994 original size:52 final size:52
Alignment explanation
Indices: 8812937--8813041 Score: 210
Period size: 52 Copynumber: 2.0 Consensus size: 52
8812927 AGCAATGGAT
8812937 CATGTTACTAGTTATACTAAACAAAAAGCACTGGTTTGTGAATAAAAACTAA
1 CATGTTACTAGTTATACTAAACAAAAAGCACTGGTTTGTGAATAAAAACTAA
8812989 CATGTTACTAGTTATACTAAACAAAAAGCACTGGTTTGTGAATAAAAACTAA
1 CATGTTACTAGTTATACTAAACAAAAAGCACTGGTTTGTGAATAAAAACTAA
8813041 C
1 C
8813042 TTAGCTAGTA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (52 bp):
CATGTTACTAGTTATACTAAACAAAAAGCACTGGTTTGTGAATAAAAACTAA
Found at i:8813034 original size:25 final size:25
Alignment explanation
Indices: 8812954--8813034 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
8812944 CTAGTTATAC
8812954 TAAACAAAAAGCACTGGTTTGTGAA
1 TAAACAAAAAGCACTGGTTTGTGAA
* *
8812979 TAAA-AACTAA-CA-T-GTTACTAGTTATA
1 TAAACAA-AAAGCACTGGTT--T-GTGA-A
8813005 CTAAACAAAAAGCACTGGTTTGTGAA
1 -TAAACAAAAAGCACTGGTTTGTGAA
8813031 TAAA
1 TAAA
8813035 AACTAACTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
22 3 0.07
23 1 0.02
24 5 0.12
25 13 0.31
26 2 0.05
27 9 0.21
28 5 0.12
29 1 0.02
30 3 0.07
ACGTcount: A:0.46, C:0.12, G:0.15, T:0.27
Consensus pattern (25 bp):
TAAACAAAAAGCACTGGTTTGTGAA
Found at i:8814245 original size:44 final size:44
Alignment explanation
Indices: 8814182--8814270 Score: 142
Period size: 44 Copynumber: 2.0 Consensus size: 44
8814172 GAATCAATGG
8814182 CATGCTTAACGACAAAAAGTTAAAATACAAAAAATAAAAAATAA
1 CATGCTTAACGACAAAAAGTTAAAATACAAAAAATAAAAAATAA
* * * *
8814226 CATGCTTAATGATAAAAAGTTGAAATATAAAAAATAAAAAATAA
1 CATGCTTAACGACAAAAAGTTAAAATACAAAAAATAAAAAATAA
8814270 C
1 C
8814271 TTTGAGAGCT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.62, C:0.09, G:0.08, T:0.21
Consensus pattern (44 bp):
CATGCTTAACGACAAAAAGTTAAAATACAAAAAATAAAAAATAA
Found at i:8823534 original size:21 final size:20
Alignment explanation
Indices: 8823510--8823631 Score: 104
Period size: 21 Copynumber: 5.8 Consensus size: 20
8823500 CTCTCCTGCG
*
8823510 TCATCCCCTGGTTACAGTCC
1 TCATCTCCTGGTTACAGTCC
* *
8823530 GTCATCTCCTGGATATAGTCC
1 -TCATCTCCTGGTTACAGTCC
8823551 TTCATCTTCC-GGTTACAGTCC
1 -TCATC-TCCTGGTTACAGTCC
*
8823572 TACCTCTCCTGGTTACAGTCC
1 T-CATCTCCTGGTTACAGTCC
* * *
8823593 TACATCCCCTGGGTATAGTCC
1 T-CATCTCCTGGTTACAGTCC
8823614 -CACCTCTCCTGGTTACAG
1 TCA--TCTCCTGGTTACAG
8823632 CCCCACATCA
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
19 2 0.02
20 4 0.05
21 73 0.89
22 3 0.04
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32
Consensus pattern (20 bp):
TCATCTCCTGGTTACAGTCC
Found at i:8823636 original size:21 final size:21
Alignment explanation
Indices: 8823516--8823655 Score: 95
Period size: 21 Copynumber: 6.7 Consensus size: 21
8823506 TGCGTCATCC
** *
8823516 CCTGGTTACAGTCCGTCATCT
1 CCTGGTTACAGTCCCACCTCT
* * *
8823537 CCTGGATATAGTCCTTCATCT-T
1 CCTGGTTACAGTCC--CACCTCT
*
8823559 CC-GGTTACAGTCCTACCTCT
1 CCTGGTTACAGTCCCACCTCT
* * *
8823579 CCTGGTTACAGTCCTACATCC
1 CCTGGTTACAGTCCCACCTCT
* *
8823600 CCTGGGTATAGTCCCACCTCT
1 CCTGGTTACAGTCCCACCTCT
* * *
8823621 CCTGGTTACAGCCCCACATCA
1 CCTGGTTACAGTCCCACCTCT
**
8823642 CCTACTTACAGTCC
1 CCTGGTTACAGTCC
8823656 TAGTTCACCA
Statistics
Matches: 90, Mismatches: 25, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
19 3 0.03
20 3 0.03
21 80 0.89
22 3 0.03
23 1 0.01
ACGTcount: A:0.18, C:0.37, G:0.15, T:0.30
Consensus pattern (21 bp):
CCTGGTTACAGTCCCACCTCT
Found at i:8823655 original size:42 final size:42
Alignment explanation
Indices: 8823563--8823655 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
8823553 CATCTTCCGG
* * * * **
8823563 TTACAGTCCTACCTCTCCTGGTTACAGTCCTACATCCCCTGG
1 TTACAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
* *
8823605 GTATAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
1 TTACAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
8823647 TTACAGTCC
1 TTACAGTCC
8823656 TAGTTCACCA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.40, G:0.13, T:0.28
Consensus pattern (42 bp):
TTACAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
Found at i:8823762 original size:21 final size:21
Alignment explanation
Indices: 8823736--8823797 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
8823726 ACCGAGCTAT
8823736 AGCCCTACCTCTCCAAGTTAC
1 AGCCCTACCTCTCCAAGTTAC
*
8823757 AGCCCTACCTCCCCAAGTTAC
1 AGCCCTACCTCTCCAAGTTAC
* *
8823778 AGCCCCACTTCTCCAAGTTA
1 AGCCCTACCTCTCCAAGTTA
8823798 TAGTCCCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.24, C:0.44, G:0.10, T:0.23
Consensus pattern (21 bp):
AGCCCTACCTCTCCAAGTTAC
Found at i:8823805 original size:21 final size:21
Alignment explanation
Indices: 8823745--8823851 Score: 81
Period size: 21 Copynumber: 5.1 Consensus size: 21
8823735 TAGCCCTACC
*
8823745 TCTCCAAGTTACAG-CCCTACC
1 TCTCCAAGTTACAGTCCC-ACT
* *
8823766 TCCCCAAGTTACAGCCCCACT
1 TCTCCAAGTTACAGTCCCACT
* *
8823787 TCTCCAAGTTATAGTCCCACA
1 TCTCCAAGTTACAGTCCCACT
* * * *
8823808 TCTCCCAGCTAGAGTCCAACT
1 TCTCCAAGTTACAGTCCCACT
* * * *
8823829 TCACCTAGCTACAGCCCCACT
1 TCTCCAAGTTACAGTCCCACT
8823850 TC
1 TC
8823852 ACCTGTATAT
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
21 66 0.96
22 3 0.04
ACGTcount: A:0.24, C:0.42, G:0.10, T:0.23
Consensus pattern (21 bp):
TCTCCAAGTTACAGTCCCACT
Found at i:8823874 original size:21 final size:21
Alignment explanation
Indices: 8823823--8823914 Score: 69
Period size: 21 Copynumber: 4.4 Consensus size: 21
8823813 CAGCTAGAGT
* *
8823823 CCAACTTCACCTAGC-TACAGC
1 CCAACATCACC-AGCATATAGC
* * * *
8823844 CCCACTTCACCTGTATATAGC
1 CCAACATCACCAGCATATAGC
*
8823865 TCAACATCACCAGCATATAGC
1 CCAACATCACCAGCATATAGC
* * * *
8823886 CCAACTTCTCCATCATACAGC
1 CCAACATCACCAGCATATAGC
8823907 CCAACATC
1 CCAACATC
8823915 CCCGTCATAC
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 1 0.02
21 54 0.98
ACGTcount: A:0.30, C:0.40, G:0.08, T:0.22
Consensus pattern (21 bp):
CCAACATCACCAGCATATAGC
Found at i:8823912 original size:42 final size:42
Alignment explanation
Indices: 8823866--8824018 Score: 130
Period size: 42 Copynumber: 3.7 Consensus size: 42
8823856 GTATATAGCT
8823866 CAACATCACCAGCATATAGCCCAACTTCTCCATCATACAGCC
1 CAACATCACCAGCATATAGCCCAACTTCTCCATCATACAGCC
* * * * * *
8823908 CAACATC-CCCGTCATACAG-CCGACATCTCCTTCCTACAGCC
1 CAACATCACCAG-CATATAGCCCAACTTCTCCATCATACAGCC
* ** * * * *
8823949 CAACCTCACCCTCCTATAGCCCTACGTCTCCCTCATACAGCC
1 CAACATCACCAGCATATAGCCCAACTTCTCCATCATACAGCC
* * * *
8823991 CTACTTCACCAGCTTATAGCCCCACTTC
1 CAACATCACCAGCATATAGCCCAACTTC
8824019 CTGGCTATAG
Statistics
Matches: 87, Mismatches: 21, Indels: 6
0.76 0.18 0.05
Matches are distributed among these distances:
41 32 0.37
42 55 0.63
ACGTcount: A:0.25, C:0.45, G:0.08, T:0.22
Consensus pattern (42 bp):
CAACATCACCAGCATATAGCCCAACTTCTCCATCATACAGCC
Found at i:8823994 original size:21 final size:21
Alignment explanation
Indices: 8823878--8823991 Score: 97
Period size: 21 Copynumber: 5.5 Consensus size: 21
8823868 ACATCACCAG
* * *
8823878 CATATAGCCCAACTTCTCCAT
1 CATACAGCCCAACATCTCCCT
8823899 CATACAGCCCAACATC-CCCGT
1 CATACAGCCCAACATCTCCC-T
* *
8823920 CATACAG-CCGACATCTCCTT
1 CATACAGCCCAACATCTCCCT
* * *
8823940 CCTACAGCCCAACCTCACCCT
1 CATACAGCCCAACATCTCCCT
* * * *
8823961 CCTATAGCCCTACGTCTCCCT
1 CATACAGCCCAACATCTCCCT
8823982 CATACAGCCC
1 CATACAGCCC
8823992 TACTTCACCA
Statistics
Matches: 74, Mismatches: 16, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
20 16 0.22
21 58 0.78
ACGTcount: A:0.25, C:0.46, G:0.08, T:0.21
Consensus pattern (21 bp):
CATACAGCCCAACATCTCCCT
Found at i:8826129 original size:29 final size:28
Alignment explanation
Indices: 8826069--8826147 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 28
8826059 ATTTAGGTAT
*
8826069 TAATTAAAAGTTAAAGGTTTATTCAGACA
1 TAATTAAAA-TTAAAGATTTATTCAGACA
** *
8826098 TAAATTAAAATTAAAGATTTATTTGGATA
1 T-AATTAAAATTAAAGATTTATTCAGACA
*
8826127 TAA-TAAAATATATAGATTTAT
1 TAATTAAAAT-TAAAGATTTAT
8826148 CTAACTAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
27 6 0.14
28 12 0.28
29 17 0.40
30 8 0.19
ACGTcount: A:0.48, C:0.03, G:0.10, T:0.39
Consensus pattern (28 bp):
TAATTAAAATTAAAGATTTATTCAGACA
Found at i:8829043 original size:18 final size:18
Alignment explanation
Indices: 8829016--8829050 Score: 54
Period size: 17 Copynumber: 1.9 Consensus size: 18
8829006 CTAAGAACAA
8829016 AAAAAGCAATG-TAAGAT
1 AAAAAGCAATGTTAAGAT
8829033 AAAAAGACAATGTTAAGA
1 AAAAAG-CAATGTTAAGA
8829051 ACAATGCTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 5 0.31
19 5 0.31
ACGTcount: A:0.60, C:0.06, G:0.17, T:0.17
Consensus pattern (18 bp):
AAAAAGCAATGTTAAGAT
Found at i:8843959 original size:24 final size:22
Alignment explanation
Indices: 8843932--8843981 Score: 55
Period size: 24 Copynumber: 2.2 Consensus size: 22
8843922 ATATAAGTAC
**
8843932 TTTAATTGTTCAAATGAAATAACA
1 TTTAATTAATCAAA-GAAAT-ACA
*
8843956 TTTATTTAATCAAAGAAATACA
1 TTTAATTAATCAAAGAAATACA
8843978 TTTA
1 TTTA
8843982 TTTCAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 7 0.30
23 5 0.22
24 11 0.48
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.40
Consensus pattern (22 bp):
TTTAATTAATCAAAGAAATACA
Found at i:8843981 original size:22 final size:24
Alignment explanation
Indices: 8843941--8843984 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
8843931 CTTTAATTGT
8843941 TCAAATGAAATAACATTTATTTAA
1 TCAAATGAAATAACATTTATTTAA
8843965 TCAAA-GAAAT-ACATTTATTT
1 TCAAATGAAATAACATTTATTT
8843985 CAAATAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 5 0.25
24 5 0.25
ACGTcount: A:0.48, C:0.09, G:0.05, T:0.39
Consensus pattern (24 bp):
TCAAATGAAATAACATTTATTTAA
Found at i:8845431 original size:42 final size:42
Alignment explanation
Indices: 8845379--8845459 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 42
8845369 ATTATTATTG
*
8845379 TAAAAATAAATATAC-TA-ACATTTGTATATATATTCTTGTATA
1 TAAAAATAAATACACTTATAC-TTT-TATATATATTCTTGTATA
*
8845421 TAAAAATAAATACACTTATACTTTTATATGTATTCTTGT
1 TAAAAATAAATACACTTATACTTTTATATATATTCTTGT
8845460 GTGAAACAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
42 28 0.80
43 5 0.14
44 2 0.06
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (42 bp):
TAAAAATAAATACACTTATACTTTTATATATATTCTTGTATA
Found at i:8845997 original size:46 final size:47
Alignment explanation
Indices: 8845929--8846021 Score: 134
Period size: 46 Copynumber: 2.0 Consensus size: 47
8845919 ACACATATGC
* * **
8845929 AACACTTATCACAATAATCTACAATCTTTTTGTAAATACTTAATTCA
1 AACACATATCACAATAATCTACAATCTTTCTCCAAATACTTAATTCA
*
8845976 AACACATATCA-AATAATCTACAATCTTTCTCCAAGTACTTAATTCA
1 AACACATATCACAATAATCTACAATCTTTCTCCAAATACTTAATTCA
8846022 CAAACAATCT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
46 31 0.76
47 10 0.24
ACGTcount: A:0.41, C:0.22, G:0.02, T:0.35
Consensus pattern (47 bp):
AACACATATCACAATAATCTACAATCTTTCTCCAAATACTTAATTCA
Found at i:8848178 original size:24 final size:24
Alignment explanation
Indices: 8848140--8848186 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
8848130 TTTTCTTTTA
* *
8848140 AATTATATTTGTAATTATTAATATT
1 AATTATATTTATAATCA-TAATATT
8848165 AATT-TATTTATAATCATAATAT
1 AATTATATTTATAATCATAATAT
8848187 GATATGGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 6 0.30
24 10 0.50
25 4 0.20
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
AATTATATTTATAATCATAATATT
Found at i:8849583 original size:21 final size:23
Alignment explanation
Indices: 8849558--8849605 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
8849548 TAATGTGAAA
8849558 AAATAA-A-TTTAACATATTAAG
1 AAATAAGACTTTAACATATTAAG
*
8849579 AAATAAGAGCTTTAACTTATTAAG
1 AAATAAGA-CTTTAACATATTAAG
8849603 AAA
1 AAA
8849606 AAAAGAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 1 0.04
24 16 0.70
ACGTcount: A:0.54, C:0.06, G:0.08, T:0.31
Consensus pattern (23 bp):
AAATAAGACTTTAACATATTAAG
Found at i:8850130 original size:29 final size:29
Alignment explanation
Indices: 8850098--8850162 Score: 130
Period size: 29 Copynumber: 2.2 Consensus size: 29
8850088 AAAACAAGGT
8850098 AAACCATTTTATTAATGATAACCAAATAA
1 AAACCATTTTATTAATGATAACCAAATAA
8850127 AAACCATTTTATTAATGATAACCAAATAA
1 AAACCATTTTATTAATGATAACCAAATAA
8850156 AAACCAT
1 AAACCAT
8850163 CTAGAGCATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.52, C:0.15, G:0.03, T:0.29
Consensus pattern (29 bp):
AAACCATTTTATTAATGATAACCAAATAA
Found at i:8860598 original size:21 final size:20
Alignment explanation
Indices: 8860574--8860695 Score: 104
Period size: 21 Copynumber: 5.8 Consensus size: 20
8860564 CTCTCCTGCG
*
8860574 TCATCCCCTGGTTACAGTCC
1 TCATCTCCTGGTTACAGTCC
* *
8860594 GTCATCTCCTGGATATAGTCC
1 -TCATCTCCTGGTTACAGTCC
8860615 TTCATCTTCC-GGTTACAGTCC
1 -TCATC-TCCTGGTTACAGTCC
*
8860636 TACCTCTCCTGGTTACAGTCC
1 T-CATCTCCTGGTTACAGTCC
* * *
8860657 TACATCCCCTGGGTATAGTCC
1 T-CATCTCCTGGTTACAGTCC
8860678 -CACCTCTCCTGGTTACAG
1 TCA--TCTCCTGGTTACAG
8860696 CCCCACATCA
Statistics
Matches: 82, Mismatches: 14, Indels: 10
0.77 0.13 0.09
Matches are distributed among these distances:
19 2 0.02
20 4 0.05
21 73 0.89
22 3 0.04
ACGTcount: A:0.16, C:0.35, G:0.16, T:0.32
Consensus pattern (20 bp):
TCATCTCCTGGTTACAGTCC
Found at i:8860700 original size:21 final size:21
Alignment explanation
Indices: 8860580--8860719 Score: 95
Period size: 21 Copynumber: 6.7 Consensus size: 21
8860570 TGCGTCATCC
** *
8860580 CCTGGTTACAGTCCGTCATCT
1 CCTGGTTACAGTCCCACCTCT
* * *
8860601 CCTGGATATAGTCCTTCATCT-T
1 CCTGGTTACAGTCC--CACCTCT
*
8860623 CC-GGTTACAGTCCTACCTCT
1 CCTGGTTACAGTCCCACCTCT
* * *
8860643 CCTGGTTACAGTCCTACATCC
1 CCTGGTTACAGTCCCACCTCT
* *
8860664 CCTGGGTATAGTCCCACCTCT
1 CCTGGTTACAGTCCCACCTCT
* * *
8860685 CCTGGTTACAGCCCCACATCA
1 CCTGGTTACAGTCCCACCTCT
**
8860706 CCTACTTACAGTCC
1 CCTGGTTACAGTCC
8860720 TAGTTCACCA
Statistics
Matches: 90, Mismatches: 25, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
19 3 0.03
20 3 0.03
21 80 0.89
22 3 0.03
23 1 0.01
ACGTcount: A:0.18, C:0.37, G:0.15, T:0.30
Consensus pattern (21 bp):
CCTGGTTACAGTCCCACCTCT
Found at i:8860719 original size:42 final size:42
Alignment explanation
Indices: 8860627--8860719 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 42
8860617 CATCTTCCGG
* * * * **
8860627 TTACAGTCCTACCTCTCCTGGTTACAGTCCTACATCCCCTGG
1 TTACAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
* *
8860669 GTATAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
1 TTACAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
8860711 TTACAGTCC
1 TTACAGTCC
8860720 TAGTTCACCA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.19, C:0.40, G:0.13, T:0.28
Consensus pattern (42 bp):
TTACAGTCCCACCTCTCCTGGTTACAGCCCCACATCACCTAC
Found at i:8860825 original size:21 final size:21
Alignment explanation
Indices: 8860799--8860860 Score: 97
Period size: 21 Copynumber: 3.0 Consensus size: 21
8860789 ACCGAGCTAT
8860799 AGCCCTACCTCTCCAAGTTAC
1 AGCCCTACCTCTCCAAGTTAC
*
8860820 AGCCCTACCTCCCCAAGTTAC
1 AGCCCTACCTCTCCAAGTTAC
* *
8860841 AGCCCCACTTCTCCAAGTTA
1 AGCCCTACCTCTCCAAGTTA
8860861 TAGTCCCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.24, C:0.44, G:0.10, T:0.23
Consensus pattern (21 bp):
AGCCCTACCTCTCCAAGTTAC
Found at i:8860868 original size:21 final size:21
Alignment explanation
Indices: 8860808--8860914 Score: 81
Period size: 21 Copynumber: 5.1 Consensus size: 21
8860798 TAGCCCTACC
*
8860808 TCTCCAAGTTACAG-CCCTACC
1 TCTCCAAGTTACAGTCCC-ACT
* *
8860829 TCCCCAAGTTACAGCCCCACT
1 TCTCCAAGTTACAGTCCCACT
* *
8860850 TCTCCAAGTTATAGTCCCACA
1 TCTCCAAGTTACAGTCCCACT
* * * *
8860871 TCTCCCAGCTAGAGTCCAACT
1 TCTCCAAGTTACAGTCCCACT
* * * *
8860892 TCACCTAGCTACAGCCCCACT
1 TCTCCAAGTTACAGTCCCACT
8860913 TC
1 TC
8860915 ACCTGTATAT
Statistics
Matches: 69, Mismatches: 16, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
21 66 0.96
22 3 0.04
ACGTcount: A:0.24, C:0.42, G:0.10, T:0.23
Consensus pattern (21 bp):
TCTCCAAGTTACAGTCCCACT
Found at i:8860937 original size:21 final size:21
Alignment explanation
Indices: 8860886--8860977 Score: 69
Period size: 21 Copynumber: 4.4 Consensus size: 21
8860876 CAGCTAGAGT
* *
8860886 CCAACTTCACCTAGC-TACAGC
1 CCAACATCACC-AGCATATAGC
* * * *
8860907 CCCACTTCACCTGTATATAGC
1 CCAACATCACCAGCATATAGC
*
8860928 TCAACATCACCAGCATATAGC
1 CCAACATCACCAGCATATAGC
* * * *
8860949 CCAACTTCTCCATCATACAGC
1 CCAACATCACCAGCATATAGC
8860970 CCAACATC
1 CCAACATC
8860978 CCCGTCATAC
Statistics
Matches: 55, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
20 1 0.02
21 54 0.98
ACGTcount: A:0.30, C:0.40, G:0.08, T:0.22
Consensus pattern (21 bp):
CCAACATCACCAGCATATAGC
Done.