Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 47 of 133
Found at i:10056612 original size:25 final size:25
Alignment explanation
Indices: 10056558--10056611 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
10056548 CCTCATTTTC
* *
10056558 TTTTTTAATGTCTCAAAACTATTTA
1 TTTTTTAATATCTCAAAAATATTTA
*
10056583 TTTTTTAATATCT-AAAAATA-TAA
1 TTTTTTAATATCTCAAAAATATTTA
10056606 TTTTTT
1 TTTTTT
10056612 TCTATATACT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
23 8 0.31
24 6 0.23
25 12 0.46
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (25 bp):
TTTTTTAATATCTCAAAAATATTTA
Found at i:10058974 original size:3 final size:3
Alignment explanation
Indices: 10058968--10059007 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
10058958 CATCATCATC
10058968 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
10059008 AATTAAGGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:10059293 original size:40 final size:41
Alignment explanation
Indices: 10059249--10059346 Score: 98
Period size: 40 Copynumber: 2.5 Consensus size: 41
10059239 AAAAAAAGTT
* *
10059249 TTTAAAAAATATTTTTTAA-TCTT-ACTAAACTATTTGATGA
1 TTTAAAAAATATTTTTTAAGTCTTAAC-AAACTATTGGAAGA
**
10059289 TTT--AAAATATTGAATTAAGTCTTAACAAACTATTGGAAGA
1 TTTAAAAAATATT-TTTTAAGTCTTAACAAACTATTGGAAGA
*
10059329 TTTAATAAAT-TTTTTTAA
1 TTTAAAAAATATTTTTTAA
10059347 AATATATATT
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
38 8 0.17
39 4 0.09
40 26 0.57
41 4 0.09
42 4 0.09
ACGTcount: A:0.42, C:0.06, G:0.07, T:0.45
Consensus pattern (41 bp):
TTTAAAAAATATTTTTTAAGTCTTAACAAACTATTGGAAGA
Found at i:10059453 original size:17 final size:18
Alignment explanation
Indices: 10059433--10059472 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
10059423 AGTTTTTGAG
10059433 AATAAATTA-TTTTTATA
1 AATAAATTAGTTTTTATA
10059450 AATAAA--AGTTTTTATA
1 AATAAATTAGTTTTTATA
10059466 AA-AAATT
1 AATAAATT
10059473 TTAATGAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
15 4 0.20
16 10 0.50
17 6 0.30
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (18 bp):
AATAAATTAGTTTTTATA
Found at i:10060003 original size:20 final size:21
Alignment explanation
Indices: 10059964--10060008 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
10059954 CCTTGTTTGT
*
10059964 ATTTTATTTATTTATTTATTC
1 ATTTTATATATTTATTTATTC
10059985 ATTTTATATATTT-TTTATTC
1 ATTTTATATATTTATTTATTC
10060005 ATTT
1 ATTT
10060009 GCACATGCAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.24, C:0.04, G:0.00, T:0.71
Consensus pattern (21 bp):
ATTTTATATATTTATTTATTC
Found at i:10062946 original size:18 final size:18
Alignment explanation
Indices: 10062919--10062956 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
10062909 ATAAATGATG
*
10062919 AAAATGAAAAA-AGAGAAA
1 AAAAT-AAAAAGAAAGAAA
10062937 AAAATAAAAAGAAAGAAA
1 AAAATAAAAAGAAAGAAA
10062955 AA
1 AA
10062957 GAAGGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (18 bp):
AAAATAAAAAGAAAGAAA
Found at i:10062954 original size:27 final size:27
Alignment explanation
Indices: 10062925--10062978 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
10062915 GATGAAAATG
10062925 AAAA-AAGAGAAAAAAATAAAAAGAAAGA
1 AAAAGAAG-GAAAAAAA-AAAAAGAAAGA
*
10062953 AAAAGAAGGAAAAAAAAAGAAGAAAG
1 AAAAGAAGGAAAAAAAAAAAAGAAAG
10062979 TGACGAGACA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 9 0.38
28 12 0.50
29 3 0.12
ACGTcount: A:0.80, C:0.00, G:0.19, T:0.02
Consensus pattern (27 bp):
AAAAGAAGGAAAAAAAAAAAAGAAAGA
Found at i:10062964 original size:14 final size:13
Alignment explanation
Indices: 10062926--10062978 Score: 54
Period size: 14 Copynumber: 4.0 Consensus size: 13
10062916 ATGAAAATGA
*
10062926 AAAAAG-AGAAAA
1 AAAAAGAAGAAAG
*
10062938 AAATAAAAAGAAAG
1 AAA-AAGAAGAAAG
*
10062952 AAAAAGAAGGAAAA
1 AAAAAGAA-GAAAG
10062966 AAAAAGAAGAAAG
1 AAAAAGAAGAAAG
10062979 TGACGAGACA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
12 3 0.09
13 10 0.30
14 20 0.61
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (13 bp):
AAAAAGAAGAAAG
Found at i:10062965 original size:9 final size:10
Alignment explanation
Indices: 10062928--10062978 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
10062918 GAAAATGAAA
10062928 AAAGAGAAAA-
1 AAAGA-AAAAG
*
10062938 AAATAAAAAG
1 AAAGAAAAAG
10062948 AAAGAAAAAG
1 AAAGAAAAAG
* *
10062958 AAGGAAAAAA
1 AAAGAAAAAG
10062968 AAAGAAGAAAG
1 AAAGAA-AAAG
10062979 TGACGAGACA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
9 4 0.12
10 26 0.79
11 3 0.09
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (10 bp):
AAAGAAAAAG
Found at i:10064441 original size:23 final size:23
Alignment explanation
Indices: 10064415--10064482 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 23
10064405 AAATTTAGGT
*
10064415 TGTGAAATATTAAAGTTTTTGAA
1 TGTGAAATATTAAAATTTTTGAA
* *
10064438 TGTGAATTTTTAAAATTTTTG-A
1 TGTGAAATATTAAAATTTTTGAA
* *
10064460 TGTG-AATCTCTAAATTTTTTGAA
1 TGTGAAATAT-TAAAATTTTTGAA
10064483 GAAAAATCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
21 3 0.08
22 15 0.41
23 19 0.51
ACGTcount: A:0.34, C:0.03, G:0.15, T:0.49
Consensus pattern (23 bp):
TGTGAAATATTAAAATTTTTGAA
Found at i:10064462 original size:22 final size:22
Alignment explanation
Indices: 10064397--10064481 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 22
10064387 CTAGAAATTA
* ** *
10064397 AATTTTTTAAATTTAGGTTGTG
1 AATTTTTAAAATTTTTGATGTG
* * *
10064419 AAATATTAAAGTTTTTGAATGTG
1 AATTTTTAAAATTTTTG-ATGTG
10064442 AATTTTTAAAATTTTTGATGTG
1 AATTTTTAAAATTTTTGATGTG
* * *
10064464 AATCTCTAAATTTTTTGA
1 AATTTTTAAAATTTTTGA
10064482 AGAAAAATCT
Statistics
Matches: 49, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
22 31 0.63
23 18 0.37
ACGTcount: A:0.33, C:0.02, G:0.14, T:0.51
Consensus pattern (22 bp):
AATTTTTAAAATTTTTGATGTG
Found at i:10064464 original size:45 final size:45
Alignment explanation
Indices: 10064397--10064482 Score: 102
Period size: 45 Copynumber: 1.9 Consensus size: 45
10064387 CTAGAAATTA
* *
10064397 AATTTTTTAAATTTAGGTTGTGAAATAT-TAAAGTTTTTGAATGTG
1 AATTTTTAAAATTTAGGATGTG-AATATCTAAAGTTTTTGAATGTG
** * *
10064442 AATTTTTAAAATTTTTGATGTGAATCTCTAAATTTTTTGAA
1 AATTTTTAAAATTTAGGATGTGAATATCTAAAGTTTTTGAA
10064483 GAAAAATCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 4 0.12
45 30 0.88
ACGTcount: A:0.34, C:0.02, G:0.14, T:0.50
Consensus pattern (45 bp):
AATTTTTAAAATTTAGGATGTGAATATCTAAAGTTTTTGAATGTG
Found at i:10064833 original size:18 final size:17
Alignment explanation
Indices: 10064803--10064836 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10064793 GAATCTTTTA
*
10064803 TGAACTTGGAATTCTTG
1 TGAACTTGAAATTCTTG
10064820 TGAACTTGAAAATTCTT
1 TGAACTTG-AAATTCTT
10064837 ACAAATATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.41
Consensus pattern (17 bp):
TGAACTTGAAATTCTTG
Found at i:10064851 original size:16 final size:16
Alignment explanation
Indices: 10064830--10064868 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
10064820 TGAACTTGAA
10064830 AATTCTTACAAATATG
1 AATTCTTACAAATATG
* *
10064846 AATTCTTGCAAATTTG
1 AATTCTTACAAATATG
10064862 AATTCTT
1 AATTCTT
10064869 TTGAATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.08, T:0.44
Consensus pattern (16 bp):
AATTCTTACAAATATG
Found at i:10064933 original size:33 final size:34
Alignment explanation
Indices: 10064878--10064980 Score: 86
Period size: 33 Copynumber: 3.1 Consensus size: 34
10064868 TTTGAATTTG
* * *
10064878 AAAATTCTTGCTAACCTTAAATT-TTACTAAA-CT
1 AAAATTCTTGCGAAACTGAAATTCTTAC-AAATCT
*
10064911 AAAATTTTTGCGAAACTGAAATTCTTACAAATCT
1 AAAATTCTTGCGAAACTGAAATTCTTACAAATCT
* * ** * *
10064945 AAAGTTCTTGTGATTCT-AAATTCTTGCGAATCT
1 AAAATTCTTGCGAAACTGAAATTCTTACAAATCT
10064978 AAA
1 AAA
10064981 CTCTTGTGAA
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
33 39 0.68
34 18 0.32
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (34 bp):
AAAATTCTTGCGAAACTGAAATTCTTACAAATCT
Found at i:10064970 original size:16 final size:16
Alignment explanation
Indices: 10064940--10065009 Score: 86
Period size: 16 Copynumber: 4.3 Consensus size: 16
10064930 AATTCTTACA
10064940 AATCTAAAGTTCTTGTG
1 AATCTAAA-TTCTTGTG
* *
10064957 ATTCTAAATTCTTGCG
1 AATCTAAATTCTTGTG
*
10064973 AATCTAAACTCTTGTG
1 AATCTAAATTCTTGTG
* *
10064989 AATCTAAAGTCTTGCG
1 AATCTAAATTCTTGTG
10065005 AATCT
1 AATCT
10065010 TTCATTTTTG
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
16 39 0.85
17 7 0.15
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (16 bp):
AATCTAAATTCTTGTG
Found at i:10064995 original size:32 final size:33
Alignment explanation
Indices: 10064929--10065009 Score: 110
Period size: 32 Copynumber: 2.5 Consensus size: 33
10064919 TGCGAAACTG
* * * *
10064929 AAATTCTTACAAATCTAAAGTTCTTGTGATTCT
1 AAATTCTTGCGAATCTAAAGCTCTTGTGAATCT
10064962 AAATTCTTGCGAATCTAAA-CTCTTGTGAATCT
1 AAATTCTTGCGAATCTAAAGCTCTTGTGAATCT
*
10064994 AAAGTCTTGCGAATCT
1 AAATTCTTGCGAATCT
10065010 TTCATTTTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
32 26 0.60
33 17 0.40
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (33 bp):
AAATTCTTGCGAATCTAAAGCTCTTGTGAATCT
Found at i:10066573 original size:12 final size:12
Alignment explanation
Indices: 10066534--10066573 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
10066524 TCTTTTTTCA
* *
10066534 TTTTCATTTTCT
1 TTTTGATTTTGT
*
10066546 TTTTGATTTTGA
1 TTTTGATTTTGT
10066558 TTTTGATTTTGT
1 TTTTGATTTTGT
10066570 TTTT
1 TTTT
10066574 TTTTATTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.10, C:0.05, G:0.10, T:0.75
Consensus pattern (12 bp):
TTTTGATTTTGT
Found at i:10066573 original size:18 final size:18
Alignment explanation
Indices: 10066521--10066561 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
10066511 AATTGCAGGT
*
10066521 TTTTCTTTTTTCATTTTCA
1 TTTTC-TTTTTGATTTTCA
*
10066540 TTTTCTTTTTGATTTTGA
1 TTTTCTTTTTGATTTTCA
10066558 TTTT
1 TTTT
10066562 GATTTTGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.10, C:0.10, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTCTTTTTGATTTTCA
Found at i:10066603 original size:25 final size:25
Alignment explanation
Indices: 10066533--10066604 Score: 69
Period size: 25 Copynumber: 2.9 Consensus size: 25
10066523 TTCTTTTTTC
10066533 ATTTTCATTTTCTTTTTGA-TT-TTG
1 ATTTTCATTTTCTTTTT-ATTTATTG
* * * *
10066557 ATTTTGATTTTGTTTTTTTTTATTT
1 ATTTTCATTTTCTTTTTATTTATTG
10066582 ATTTTCATTTT-TTATTTATTTAT
1 ATTTTCATTTTCTT-TTTATTTAT
10066605 GTGTTACATT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
24 19 0.49
25 20 0.51
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (25 bp):
ATTTTCATTTTCTTTTTATTTATTG
Found at i:10066620 original size:3 final size:3
Alignment explanation
Indices: 10066612--10066650 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
10066602 TATGTGTTAC
10066612 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10066651 GCTAATTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:10066833 original size:21 final size:19
Alignment explanation
Indices: 10066730--10066851 Score: 92
Period size: 21 Copynumber: 6.3 Consensus size: 19
10066720 TTTTAATAAG
* *
10066730 ATTATT-TTTTTGTATGAT
1 ATTATTATTATTGCATGAT
*
10066748 ATTTTATATTAATTGCATGAT
1 ATTAT-TATT-ATTGCATGAT
10066769 AATT-TATATTATTGCATGAT
1 -ATTAT-TATTATTGCATGAT
*
10066789 -TATATTATTTTTGCATG--
1 AT-TATTATTATTGCATGAT
*
10066806 GTTATTATTATTGCATGACAT
1 ATTATTATTATTGCATG--AT
*
10066827 ATTATTATTATTGTATGAT
1 ATTATTATTATTGCATGAT
10066846 ATTATT
1 ATTATT
10066852 TACATGATAA
Statistics
Matches: 86, Mismatches: 7, Indels: 21
0.75 0.06 0.18
Matches are distributed among these distances:
17 14 0.16
18 6 0.07
19 21 0.24
20 13 0.15
21 29 0.34
22 3 0.03
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.56
Consensus pattern (19 bp):
ATTATTATTATTGCATGAT
Found at i:10071570 original size:3 final size:3
Alignment explanation
Indices: 10071562--10071623 Score: 124
Period size: 3 Copynumber: 20.7 Consensus size: 3
10071552 TTTTTTAGAT
10071562 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
10071610 TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TT
10071624 GTCAATAAGA
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 59 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:10076460 original size:117 final size:117
Alignment explanation
Indices: 10076305--10076530 Score: 416
Period size: 117 Copynumber: 1.9 Consensus size: 117
10076295 AAAACACAGG
*
10076305 TTGACTCCTTAATTATTTCTATTAGTTTGACAATGGTGAACAATATAGAGCATTATCATATTTAC
1 TTGACTCCTTAATCATTTCTATTAGTTTGACAATGGTGAACAATATAGAGCATTATCATATTTAC
*
10076370 TTGTATCCTGTGACCTAAACACACCACTTCATATCTTGAGCATAGAAATAAT
66 TTATATCCTGTGACCTAAACACACCACTTCATATCTTGAGCATAGAAATAAT
*
10076422 TTGACTTCTTAATCATTTCTATTAGTTTGACAATGGTGAACAATATAGAGCATTATCATATTTAC
1 TTGACTCCTTAATCATTTCTATTAGTTTGACAATGGTGAACAATATAGAGCATTATCATATTTAC
*
10076487 TTATATCCTGTGACCTAAACACATCACTTCATATCTTGAGCATA
66 TTATATCCTGTGACCTAAACACACCACTTCATATCTTGAGCATA
10076531 ATGGAACCGT
Statistics
Matches: 105, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
117 105 1.00
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.38
Consensus pattern (117 bp):
TTGACTCCTTAATCATTTCTATTAGTTTGACAATGGTGAACAATATAGAGCATTATCATATTTAC
TTATATCCTGTGACCTAAACACACCACTTCATATCTTGAGCATAGAAATAAT
Found at i:10096965 original size:36 final size:36
Alignment explanation
Indices: 10096918--10096991 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
10096908 CTTGTACTTA
10096918 TTTTTAGGTTGTTCCTTGCTTCTCAAACTAGTTTTC
1 TTTTTAGGTTGTTCCTTGCTTCTCAAACTAGTTTTC
10096954 TTTTTAGGTTGTTCCTTGCTTCTCAAACTAGTTTTC
1 TTTTTAGGTTGTTCCTTGCTTCTCAAACTAGTTTTC
10096990 TT
1 TT
10096992 CTTTTCCATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.14, C:0.19, G:0.14, T:0.54
Consensus pattern (36 bp):
TTTTTAGGTTGTTCCTTGCTTCTCAAACTAGTTTTC
Found at i:10107525 original size:16 final size:16
Alignment explanation
Indices: 10107504--10107535 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10107494 ACTAAAGACT
10107504 TGAAATTGGTATTATA
1 TGAAATTGGTATTATA
*
10107520 TGAAATTGGTGTTATA
1 TGAAATTGGTATTATA
10107536 CCAAATGCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (16 bp):
TGAAATTGGTATTATA
Found at i:10110245 original size:105 final size:104
Alignment explanation
Indices: 10110122--10110448 Score: 377
Period size: 105 Copynumber: 3.1 Consensus size: 104
10110112 TCAAACTCGA
** *
10110122 TCATTTTCATTCTTCAACTTGCAGTTCAATCTTAGTCATTTTCATTCTTCGACTCATGGTTCAAT
1 TCATTTTCATTCCCCAACTTGCAGTTCAATCTT-GTCATTTTCATTCTTCGACTCATAGTTCAAT
* * * *
10110187 CCCAATCATATTTTTTCTTCGACTCATGGTTTAATCTTGG
65 CCTAGTCATATTTTTTCTTTGACTCATGGTTCAATCTTGG
** * * * *
10110227 TCATTTTCATTCCCCAACTTATAGTTCAATATCTGTCATTTTCATTCTTTGACTCACAGTTTAAT
1 TCATTTTCATTCCCCAACTTGCAGTTCAATCT-TGTCATTTTCATTCTTCGACTCATAGTTCAAT
* * * ** *
10110292 TCTAGTCATATTTATTCTTTAACTTGTAGTTCAATCTTGG
65 CCTAGTCATATTTTTTCTTTGACTCATGGTTCAATCTTGG
* * * *
10110332 TCATTTTCATTTCCCAACTTGCAGTTCAATCTTGGTCATTTTTATT-TCTCAACTCTTAGTTCAA
1 TCATTTTCATTCCCCAACTTGCAGTTCAATCTT-GTCATTTTCATTCT-TCGACTCATAGTTCAA
* * *
10110396 TCCTGGTCAAATTTTTTCTTTGACTCATGGTTCAATCTCGG
64 TCCTAGTCATATTTTTTCTTTGACTCATGGTTCAATCTTGG
10110437 TCATTTTCATTC
1 TCATTTTCATTC
10110449 TTCAACTCAT
Statistics
Matches: 180, Mismatches: 39, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
104 2 0.01
105 177 0.98
106 1 0.01
ACGTcount: A:0.21, C:0.22, G:0.10, T:0.47
Consensus pattern (104 bp):
TCATTTTCATTCCCCAACTTGCAGTTCAATCTTGTCATTTTCATTCTTCGACTCATAGTTCAATC
CTAGTCATATTTTTTCTTTGACTCATGGTTCAATCTTGG
Found at i:10110464 original size:105 final size:104
Alignment explanation
Indices: 10110111--10110971 Score: 372
Period size: 105 Copynumber: 8.2 Consensus size: 104
10110101 CAACTTGTGA
* * *
10110111 TTCAAACTCGATCATTTTCATTCTTCAACTTGCAGTTCAATCTTAGTCATTTTCATTCTTCGACT
1 TTCAATCTCGGTCATTTTCATTCTCCAACTTG-AGTTCAATCTTAGTCATTTTCATTCTTCGACT
* * * *
10110176 CATGGTTCAATCCCAATCATATTTTTTCTTCGACTCATGG
65 CATAGTTCAATCCTAGTCATATTTTTTCTTTGACTCATGG
* * * * * *
10110216 TTTAATCTTGGTCATTTTCATTCCCCAACTTATAGTTCAATATCT-GTCATTTTCATTCTTTGAC
1 TTCAATCTCGGTCATTTTCATTCTCCAACTT-GAGTTCAATCT-TAGTCATTTTCATTCTTCGAC
* * * * * ** *
10110280 TCACAGTTTAATTCTAGTCATATTTATTCTTTAACTTGTAG
64 TCATAGTTCAATCCTAGTCATATTTTTTCTTTGACTCATGG
* * * *
10110321 TTCAATCTTGGTCATTTTCATT-TCCCAACTTGCAGTTCAATCTTGGTCATTTTTATT-TCTCAA
1 TTCAATCTCGGTCATTTTCATTCT-CCAACTTG-AGTTCAATCTTAGTCATTTTCATTCT-TCGA
* * *
10110384 CTCTTAGTTCAATCCTGGTCAAATTTTTTCTTTGACTCATGG
63 CTCATAGTTCAATCCTAGTCATATTTTTTCTTTGACTCATGG
* * * *
10110426 TTCAATCTCGGTCATTTTCATTCTTCAACTCATG-GTTCAATCTCAGTCATATTT-ATTTTTTGA
1 TTCAATCTCGGTCATTTTCATTCTCCAACT--TGAGTTCAATCTTAGTCAT-TTTCATTCTTCGA
* * ** * * ** **
10110489 CTCGTAGCTCAATTTTAGTCAT-TTTCATTATTCAACTCGCGG
63 CTCATAGTTCAATCCTAGTCATATTT-TTTCTTTGACTCATGG
* ** * *** * *
10110531 TTC-TTCTTAGTCATTTTTATTCTTTGACTTATAGTTCAATCTTTA-TCATTTTCATTCTTCAAC
1 TTCAATCTCGGTCATTTTCATTCTCCAACTT-GAGTTCAATC-TTAGTCATTTTCATTCTTCGAC
* * * * ** *
10110594 TCACAGTTCAAT-TTTGATCATATTTATTCTTTGACTCGCGA
64 TCATAGTTCAATCCTAG-TCATATTTTTTCTTTGACTCATGG
* * * * * * * * *
10110635 TTCAAT-TCCAGTCATATTT-ATTCTTCGACCCATG-GTTCAATCCTAATCATTTTTATTTTTTG
1 TTCAATCT-CGGTCAT-TTTCATTC-TCCA-ACTTGAGTTCAATCTTAGTCATTTTCATTCTTCG
* * * *
10110697 ACTTACAATTCAAT-CTCAGTCAT-TTTTATT-TTCTGATTTGCAT--
62 ACTCATAGTTCAATCCT-AGTCATATTTT-TTCTT-TGA-CT-CATGG
** * * * *
10110740 TTCAATC-CTAATCATTTTTATTCAT-CAACTCGCAATTCAATCCTT-GTCACTTTT-ATTCTTT
1 TTCAATCTC-GGTCATTTTCATTC-TCCAACTTG-AGTTCAAT-CTTAGTCA-TTTTCATTCTTC
* * * * * *
10110801 GACTCACAGTTTAATTCT-GATGATATTTATTCTTTGACTCGTGG
61 GACTCATAGTTCAATCCTAG-TCATATTTTTTCTTTGACTCATGG
** * *
10110845 TTCAATCAGGGTCATTTTCATT-TCTCAACTT-ATGGTTCAAT-TCTAGTCATTTTCATTTTTTG
1 TTCAATCTCGGTCATTTTCATTCTC-CAACTTGA--GTTCAATCT-TAGTCATTTTCATTCTTCG
* * ** *
10110907 ACT--TACGACTCAATCCTAGTCATATTTTTTCATCAACTTATGG
62 ACTCATA-G-TTCAATCCTAGTCATATTTTTTCTTTGACTCATGG
* * *
10110950 GTCAATTTAGGTCATTTTCATT
1 TTCAATCTCGGTCATTTTCATT
10110972 TCCCAGCTTG
Statistics
Matches: 567, Mismatches: 136, Indels: 106
0.70 0.17 0.13
Matches are distributed among these distances:
102 1 0.00
103 14 0.02
104 93 0.16
105 428 0.75
106 26 0.05
107 5 0.01
ACGTcount: A:0.23, C:0.21, G:0.10, T:0.47
Consensus pattern (104 bp):
TTCAATCTCGGTCATTTTCATTCTCCAACTTGAGTTCAATCTTAGTCATTTTCATTCTTCGACTC
ATAGTTCAATCCTAGTCATATTTTTTCTTTGACTCATGG
Found at i:10110488 original size:70 final size:70
Alignment explanation
Indices: 10110075--10110722 Score: 342
Period size: 70 Copynumber: 9.3 Consensus size: 70
10110065 TCGATTCACG
* ** * * *
10110075 GTTCAATTTTAGTCATTTTCATTCTTCAACTTGT-GATTCAAACTC-GATCAT-TTTCATTCTTC
1 GTTCAATCTTAGTCATTTTCATTCTTCAACTCATAG-TTCAATCTCAG-TCATATTT-ATTTTTT
* ***
10110137 AACTTGCA
63 GACTCATA
* * * * *
10110145 GTTCAATCTTAGTCATTTTCATTCTTCGACTCATGGTTCAATCCCAATCATATTT-TTTCTTCGA
1 GTTCAATCTTAGTCATTTTCATTCTTCAACTCATAGTTCAATCTCAGTCATATTTATTT-TTTGA
*
10110209 CTCATG
65 CTCATA
* * ** * * * *
10110215 GTTTAATCTTGGTCATTTTCATTCCCCAACTTATAGTTCAATATCTGTCAT-TTTCATTCTTTGA
1 GTTCAATCTTAGTCATTTTCATTCTTCAACTCATAGTTCAATCTCAGTCATATTT-ATTTTTTGA
*
10110279 CTCACA
65 CTCATA
* * ** ** ***
10110285 GTTTAAT-TCTAGTCATATTT-ATTCTTTAACTTGTAGTTCAATCTTGGTCAT-TTTCATTTCCC
1 GTTCAATCT-TAGTCAT-TTTCATTCTTCAACTCATAGTTCAATCTCAGTCATATTT-ATTTTTT
* ***
10110347 AACTTGCA
63 GACTCATA
* * * * *
10110355 GTTCAATCTTGGTCATTTTTATT-TCTCAACTCTTAGTTCAATC-CTGGTCAAATTT-TTTCTTT
1 GTTCAATCTTAGTCATTTTCATTCT-TCAACTCATAGTTCAATCTC-AGTCATATTTATTT-TTT
*
10110417 GACTCATG
63 GACTCATA
** *
10110425 GTTCAATCTCGGTCATTTTCATTCTTCAACTCATGGTTCAATCTCAGTCATATTTATTTTTTGAC
1 GTTCAATCTTAGTCATTTTCATTCTTCAACTCATAGTTCAATCTCAGTCATATTTATTTTTTGAC
*
10110490 TCGTA
66 TCATA
* * * *** * * * *
10110495 GCTCAATTTTAGTCATTTTCATTATTCAACTCGCGGTTC-TTCTTAGTCATTTTTATTCTTTGAC
1 GTTCAATCTTAGTCATTTTCATTCTTCAACTCATAGTTCAATCTCAGTCATATTTATTTTTTGAC
*
10110559 TTATA
66 TCATA
* ** *
10110564 GTTCAATCTTTA-TCATTTTCATTCTTCAACTCACAGTTCAAT-TTTGATCATATTTATTCTTTG
1 GTTCAATC-TTAGTCATTTTCATTCTTCAACTCATAGTTCAATCTCAG-TCATATTTATTTTTTG
**
10110627 ACTC-GC
64 ACTCATA
* * * * * *
10110633 GATTCAAT-TCCAGTCATATTT-ATTCTTCGACCCATGGTTCAATC-CTAATCATTTTTATTTTT
1 G-TTCAATCT-TAGTCAT-TTTCATTCTTCAACTCATAGTTCAATCTC-AGTCATATTTATTTTT
* *
10110695 TGACTTACA
62 TGACTCATA
* *
10110704 ATTCAATCTCAGTCATTTT
1 GTTCAATCTTAGTCATTTT
10110723 TATTTTCTGA
Statistics
Matches: 446, Mismatches: 104, Indels: 57
0.73 0.17 0.09
Matches are distributed among these distances:
68 1 0.00
69 75 0.17
70 348 0.78
71 22 0.05
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (70 bp):
GTTCAATCTTAGTCATTTTCATTCTTCAACTCATAGTTCAATCTCAGTCATATTTATTTTTTGAC
TCATA
Found at i:10110614 original size:35 final size:35
Alignment explanation
Indices: 10110087--10110624 Score: 253
Period size: 35 Copynumber: 15.4 Consensus size: 35
10110077 TCAATTTTAG
** * *
10110087 TCATTTTCATTCTTCAACTTGT-GATTCAAACTCGA
1 TCATTTTCATTCTTCAACTCATAG-TTCAATCTTGA
***
10110122 TCATTTTCATTCTTCAACTTGCAGTTCAATCTT-A
1 TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
* * ***
10110156 GTCATTTTCATTCTTCGACTCATGGTTCAATCCCAA
1 -TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
* * * * *
10110192 TCATATTT-TTTCTTCGACTCATGGTTTAATCTTGG
1 TCAT-TTTCATTCTTCAACTCATAGTTCAATCTTGA
** * *
10110227 TCATTTTCATTCCCCAACTTATAGTTCAATATCTG-
1 TCATTTTCATTCTTCAACTCATAGTTCAATCT-TGA
** * * *
10110262 TCATTTTCATTCTTTGACTCACAGTTTAATTCTAG-
1 TCATTTTCATTCTTCAACTCATAGTTCAA-TCTTGA
* ** *
10110297 TCATATTT-ATTCTTTAACTTGTAGTTCAATCTTGG
1 TCAT-TTTCATTCTTCAACTCATAGTTCAATCTTGA
* *** *
10110332 TCATTTTCATT-TCCCAACTTGCAGTTCAATCTTGG
1 TCATTTTCATTCT-TCAACTCATAGTTCAATCTTGA
* * * *
10110367 TCATTTTTATT-TCTCAACTCTTAGTTCAATCCTGG
1 TCATTTTCATTCT-TCAACTCATAGTTCAATCTTGA
** * * *
10110402 TCAAATTTT--TTCTTTGACTCATGGTTCAATCTCGG
1 TC--ATTTTCATTCTTCAACTCATAGTTCAATCTTGA
* *
10110437 TCATTTTCATTCTTCAACTCATGGTTCAATC-TCA
1 TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
* ** * * *
10110471 GTCATATTT-ATTTTTTGACTCGTAGCTCAAT-TTTA
1 -TCAT-TTTCATTCTTCAACTCATAGTTCAATCTTGA
* *** *
10110506 GTCATTTTCATTATTCAACTCGCGGTTC-TTCTT-A
1 -TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
* ** * *
10110540 GTCATTTTTATTCTTTGACTTATAGTTCAATCTTTA
1 -TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
* *
10110576 TCATTTTCATTCTTCAACTCACAGTTCAATTTTGA
1 TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
10110611 TCATATTT-ATTCTT
1 TCAT-TTTCATTCTT
10110625 TGACTCGCGA
Statistics
Matches: 390, Mismatches: 89, Indels: 48
0.74 0.17 0.09
Matches are distributed among these distances:
33 5 0.01
34 37 0.09
35 323 0.83
36 20 0.05
37 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.09, T:0.47
Consensus pattern (35 bp):
TCATTTTCATTCTTCAACTCATAGTTCAATCTTGA
Found at i:10110640 original size:139 final size:140
Alignment explanation
Indices: 10110407--10110722 Score: 329
Period size: 139 Copynumber: 2.3 Consensus size: 140
10110397 CCTGGTCAAA
* * * **
10110407 TTTT-TTCTTTGACTCATGGTTCAATCTCGGTCATTTTCATTCTTCAACTCATGGTTCAATCTCA
1 TTTTATTCTTTGACTTATAGTTCAATCTCGATCATTTTCATTCTTCAACTCACAGTTCAATCTCA
* * ** * *
10110471 GTCATATTTATTTTTTGACTCGTAGCTCAATTTTAGTCAT-TTTCATTATTCAACTCGCGGTTC-
66 GTCATATTTATTCTTTGACTCGGAGCTCAATTCCAGTCATATTT-ATTATTCAACCCACGGTTCA
* * *
10110534 TTCTTAGTCAT
130 ATCCTAATCAT
** **
10110545 TTTTATTCTTTGACTTATAGTTCAATCTTTATCATTTTCATTCTTCAACTCACAGTTCAAT-TTT
1 TTTTATTCTTTGACTTATAGTTCAATCTCGATCATTTTCATTCTTCAACTCACAGTTCAATCTCA
* * * *
10110609 GATCATATTTATTCTTTGACTCGCGA-TTCAATTCCAGTCATATTTATTCTTCGACCCATGGTTC
66 G-TCATATTTATTCTTTGACTCG-GAGCTCAATTCCAGTCATATTTATTATTCAACCCACGGTTC
10110673 AATCCTAATCAT
129 AATCCTAATCAT
* * *
10110685 TTTTATTTTTTGACTTACAATTCAATCTC-AGTCATTTT
1 TTTTATTCTTTGACTTATAGTTCAATCTCGA-TCATTTT
10110723 TATTTTCTGA
Statistics
Matches: 146, Mismatches: 26, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
138 6 0.04
139 96 0.66
140 44 0.30
ACGTcount: A:0.22, C:0.21, G:0.09, T:0.48
Consensus pattern (140 bp):
TTTTATTCTTTGACTTATAGTTCAATCTCGATCATTTTCATTCTTCAACTCACAGTTCAATCTCA
GTCATATTTATTCTTTGACTCGGAGCTCAATTCCAGTCATATTTATTATTCAACCCACGGTTCAA
TCCTAATCAT
Found at i:10110690 original size:35 final size:35
Alignment explanation
Indices: 10110121--10110840 Score: 177
Period size: 35 Copynumber: 20.6 Consensus size: 35
10110111 TTCAAACTCG
* * ** *
10110121 ATCATTTTCATTCTTCAACTTGCAGTTCAATCTTA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * ** *
10110156 GTCATTTTCATTCTTCGACTCATGGTTCAATCCCA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
** * * *
10110191 ATCATATTTT-TTCTTCGACTCATGGTTTAATCTTG
1 ATCAT-TTTTATTCTTCGACTCACAGTTCAATCCTA
* * ** * * * *
10110226 GTCATTTTCATTCCCCAACTTATAGTTCAATATCT-
1 ATCATTTTTATTCTTCGACTCACAGTTCAAT-CCTA
* * * * *
10110261 GTCATTTTCATTCTTTGACTCACAGTTTAATTCTA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * ** *** * *
10110296 GTCATATTTATTCTTTAACTTGTAGTTCAATCTTG
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * * * ** * *
10110331 GTCATTTTCATT-TCCCAACTTGCAGTTCAATCTTG
1 ATCATTTTTATTCT-TCGACTCACAGTTCAATCCTA
* * ** *
10110366 GTCATTTTTATT-TCTCAACTCTTAGTTCAATCCTG
1 ATCATTTTTATTCT-TCGACTCACAGTTCAATCCTA
* * * ** *
10110401 GTCAAATTTT-TTCTTTGACTCATGGTTCAAT-CTCG
1 ATC-ATTTTTATTCTTCGACTCACAGTTCAATCCT-A
* * * **
10110436 GTCATTTTCATTCTTCAACTCATGGTTCAAT-CTCA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCT-A
* * * * ** * **
10110471 GTCATATTTATTTTTTGACTCGTAGCTCAATTTTA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * * * * * * *
10110506 GTCATTTTCATTATTCAACTCGCGGTTC-TTCTTA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * * * * *
10110540 GTCATTTTTATTCTTTGACTTATAGTTCAATCTTT
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * ** *
10110575 ATCATTTTCATTCTTCAACTCACAGTTCAATTTTG
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * *
10110610 ATCATATTTATTCTTTGACTCGC-GATTCAATTCC-A
1 ATCATTTTTATTCTTCGACTCACAG-TTCAA-TCCTA
* * * **
10110645 GTCATATTTATTCTTCGACCCATGGTTCAATCCTA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * * *
10110680 ATCATTTTTATTTTTTGACTTACAATTCAAT-CTCA
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCT-A
* * ** *
10110715 GTCATTTTTATT-TTCTGATTTGCATTTCAATCCTA
1 ATCATTTTTATTCTTC-GACTCACAGTTCAATCCTA
* * * * *
10110750 ATCATTTTTATTCATCAACTCGCAATTCAATCCTT
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * * * * *
10110785 GTCACTTTTATTCTTTGACTCACAGTTTAATTCTG
1 ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
* * *
10110820 ATGATATTTATTCTTTGACTC
1 ATCATTTTTATTCTTCGACTC
10110841 GTGGTTCAAT
Statistics
Matches: 519, Mismatches: 147, Indels: 38
0.74 0.21 0.05
Matches are distributed among these distances:
34 45 0.09
35 457 0.88
36 17 0.03
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (35 bp):
ATCATTTTTATTCTTCGACTCACAGTTCAATCCTA
Found at i:10110725 original size:70 final size:70
Alignment explanation
Indices: 10110076--10110909 Score: 311
Period size: 70 Copynumber: 11.9 Consensus size: 70
10110066 CGATTCACGG
* * ** * * * * **
10110076 TTCAATTTTAGTCATTTTCATTCTTCAACTTGTGATTCAA-ACTCGATCATTTTCATTCTTCAAC
1 TTCAATCTCAGTCATTTTCATTCTTCAACTCATGGTTCAATCCT-AATCATTTTTATTCTTTGAC
** *
10110140 TTGCAG
65 TCACAA
* * * *
10110146 TTCAATCTTAGTCATTTTCATTCTTCGACTCATGGTTCAATCCCAATCATATTTT-TTCTTCGAC
1 TTCAATCTCAGTCATTTTCATTCTTCAACTCATGGTTCAATCCTAATCAT-TTTTATTCTTTGAC
***
10110210 TCATGG
65 TCACAA
* ** ** * * * * *
10110216 TTTAATCTTGGTCATTTTCATTCCCCAACTTATAGTTCAATATCT-GTCATTTTCATTCTTTGAC
1 TTCAATCTCAGTCATTTTCATTCTTCAACTCATGGTTCAAT-CCTAATCATTTTTATTCTTTGAC
*
10110280 TCACAG
65 TCACAA
* * ** * * ** * ***
10110286 TTTAAT-TCTAGTCATATTT-ATTCTTTAACTTGTAGTTCAATCTTGGTCATTTTCATT-TCCCA
1 TTCAATCTC-AGTCAT-TTTCATTCTTCAACTCATGGTTCAATCCTAATCATTTTTATTCT-TTG
** *
10110348 ACTTGCAG
63 ACTCACAA
** * * * ** *
10110356 TTCAATCTTGGTCATTTTTATT-TCTCAACTCTTAGTTCAATCCTGGTCAAATTTT-TTCTTTGA
1 TTCAATCTCAGTCATTTTCATTCT-TCAACTCATGGTTCAATCCTAATC-ATTTTTATTCTTTGA
***
10110419 CTCATGG
64 CTCACAA
* * * *
10110426 TTCAATCTCGGTCATTTTCATTCTTCAACTCATGGTTCAAT-CTCAGTCATATTTATTTTTTGAC
1 TTCAATCTCAGTCATTTTCATTCTTCAACTCATGGTTCAATCCT-AATCATTTTTATTCTTTGAC
** *
10110490 TCGTAG
65 TCACAA
* * * * ** * * *
10110496 CTCAATTTTAGTCATTTTCATTATTCAACTCGCGGTTC-TTCTTAGTCATTTTTATTCTTTGACT
1 TTCAATCTCAGTCATTTTCATTCTTCAACTCATGGTTCAATCCTAATCATTTTTATTCTTTGACT
* * *
10110560 TATAG
66 CACAA
* ** ** * *
10110565 TTCAATCTTTA-TCATTTTCATTCTTCAACTCACAGTTCAATTTTGATCATATTTATTCTTTGAC
1 TTCAATC-TCAGTCATTTTCATTCTTCAACTCATGGTTCAATCCTAATCATTTTTATTCTTTGAC
* *
10110629 TCGCGA
65 TCACAA
* * *
10110635 TTCAAT-TCCAGTCATATTT-ATTCTTCGACCCATGGTTCAATCCTAATCATTTTTATTTTTTGA
1 TTCAATCT-CAGTCAT-TTTCATTCTTCAACTCATGGTTCAATCCTAATCATTTTTATTCTTTGA
*
10110698 CTTACAA
64 CTCACAA
* ** * **
10110705 TTCAATCTCAGTCATTTTTATT-TTCTGATTTGCAT--TTCAATCCTAATCATTTTTATTCATCA
1 TTCAATCTCAGTCATTTTCATTCTTC--AACT-CATGGTTCAATCCTAATCATTTTTATTCTTTG
*
10110767 ACTCGCAA
63 ACTCACAA
* ** ** * * * * *
10110775 TTCAATC-CTTGTCACTTTT-ATTCTTTGACTCACAGTTTAATTCTGATGATATTTATTCTTTGA
1 TTCAATCTC-AGTCA-TTTTCATTCTTCAACTCATGGTTCAATCCTAATCATTTTTATTCTTTGA
****
10110838 CTCGTGG
64 CTCACAA
*** * * * * *
10110845 TTCAATCAGGGTCATTTTCATT-TCTCAACTTATGGTTCAATTCTAGTCATTTTCATTTTTTGAC
1 TTCAATCTCAGTCATTTTCATTCT-TCAACTCATGGTTCAATCCTAATCATTTTTATTCTTTGAC
10110909 T
65 T
10110910 TACGACTCAA
Statistics
Matches: 580, Mismatches: 149, Indels: 70
0.73 0.19 0.09
Matches are distributed among these distances:
68 3 0.01
69 82 0.14
70 467 0.81
71 25 0.04
72 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.09, T:0.47
Consensus pattern (70 bp):
TTCAATCTCAGTCATTTTCATTCTTCAACTCATGGTTCAATCCTAATCATTTTTATTCTTTGACT
CACAA
Found at i:10110894 original size:35 final size:35
Alignment explanation
Indices: 10110855--10110988 Score: 121
Period size: 35 Copynumber: 3.8 Consensus size: 35
10110845 TTCAATCAGG
10110855 GTCATTTTCATTTCTCAACTTATGGTTCAATTCTA
1 GTCATTTTCATTTCTCAACTTATGGTTCAATTCTA
* ** * ** *
10110890 GTCATTTTCATTTTTTGACTTACGACTCAATCCTA
1 GTCATTTTCATTTCTCAACTTATGGTTCAATTCTA
*
10110925 GTCATATTT--TTTCATCAACTTATGGGTCAATT-TA
1 GTCAT-TTTCATTTC-TCAACTTATGGTTCAATTCTA
* * *
10110959 GGTCATTTTCATTTCCCAGCTTGTGGTTCA
1 -GTCATTTTCATTTCTCAACTTATGGTTCA
10110989 GTTTTGATTA
Statistics
Matches: 76, Mismatches: 18, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
34 8 0.11
35 61 0.80
36 7 0.09
ACGTcount: A:0.22, C:0.20, G:0.12, T:0.46
Consensus pattern (35 bp):
GTCATTTTCATTTCTCAACTTATGGTTCAATTCTA
Found at i:10114098 original size:22 final size:21
Alignment explanation
Indices: 10114055--10114098 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
10114045 TTCATGATTA
*
10114055 ATATTTTATGTTATCATTTAT
1 ATATTTTATGTTATCATATAT
10114076 ATATGTTTATG-TAT-ATATAT
1 ATAT-TTTATGTTATCATATAT
10114096 ATA
1 ATA
10114099 GGATAGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 8 0.38
21 7 0.33
22 6 0.29
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.57
Consensus pattern (21 bp):
ATATTTTATGTTATCATATAT
Found at i:10114235 original size:199 final size:199
Alignment explanation
Indices: 10113886--10114296 Score: 741
Period size: 199 Copynumber: 2.1 Consensus size: 199
10113876 TTCTATTTCT
*
10113886 TATATATTAATATAGGATAACTTTAAAGTATGGGGGTAGGGGCTGAATATACTTGTTCTGGATCG
1 TATATA-T-ATATAGGATAACTTTAAAGTATGGGGGTAAGGGCTGAATATACTTGTTCTGGATCG
*
10113951 GTCCCATACATATTACATGCAGGCTTACATTCATTTCTCTCATATTTGAGCCTCGTGCATTATGA
64 GTCCCATACATATTACATGCAGGCTTACATTCATTTCTCTCATATTTGAGCCTCGTGCATTATAA
10114016 TTTCTTGGTTTAATGTTCTGTGTGTTAACTTCATGATTAATATTTTATGTTATCATTTATATATG
129 TTTCTTGGTTTAATGTTCTGTGTGTTAACTTCATGATTAATATTTTATGTTATCATTTATATATG
10114081 TTTATG
194 TTTATG
* *
10114087 TATATATATATAGGATAGCTTTAAAGTATGGGGGTAAGGGCTGAATATACTTGTTCTGGATCTGT
1 TATATATATATAGGATAACTTTAAAGTATGGGGGTAAGGGCTGAATATACTTGTTCTGGATCGGT
* * *
10114152 CCCATGCATATTACATGCAGGCTTACATTCATTTCTCTCGTATTTGAGCCTCTTGCATTATAATT
66 CCCATACATATTACATGCAGGCTTACATTCATTTCTCTCATATTTGAGCCTCGTGCATTATAATT
10114217 TCTTGGTTTAATGTTCTGTGTGTTAACTTCATGATTAATATTTTATGTTATCATTTATATATGTT
131 TCTTGGTTTAATGTTCTGTGTGTTAACTTCATGATTAATATTTTATGTTATCATTTATATATGTT
10114282 TATG
196 TATG
10114286 TATATATATAT
1 TATATATATAT
10114297 GCAATTTATA
Statistics
Matches: 203, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
199 196 0.97
200 1 0.00
201 6 0.03
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.44
Consensus pattern (199 bp):
TATATATATATAGGATAACTTTAAAGTATGGGGGTAAGGGCTGAATATACTTGTTCTGGATCGGT
CCCATACATATTACATGCAGGCTTACATTCATTTCTCTCATATTTGAGCCTCGTGCATTATAATT
TCTTGGTTTAATGTTCTGTGTGTTAACTTCATGATTAATATTTTATGTTATCATTTATATATGTT
TATG
Found at i:10116971 original size:16 final size:17
Alignment explanation
Indices: 10116952--10116987 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10116942 ACGTGAAATT
10116952 TTTTATTTA-AGGAAAA
1 TTTTATTTATAGGAAAA
*
10116968 TTTTGTTTATAGGAAAA
1 TTTTATTTATAGGAAAA
10116985 TTT
1 TTT
10116988 AAAGGTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (17 bp):
TTTTATTTATAGGAAAA
Found at i:10117441 original size:43 final size:42
Alignment explanation
Indices: 10117358--10117455 Score: 126
Period size: 44 Copynumber: 2.3 Consensus size: 42
10117348 ATTAATGTGT
*
10117358 AAAAAATTAAAATACTTAATAAATTACTACATTTTCAAAATC
1 AAAAAATAAAAATACTTAATAAATTACTACATTTTCAAAATC
* * *
10117400 ATAAAAATAATAAATATTTAATAGATTATTACATTTT-AAAATC
1 A-AAAAATAA-AAATACTTAATAAATTACTACATTTTCAAAATC
10117443 AAATAAATAAAAA
1 AAA-AAATAAAAA
10117456 CATGTGATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
42 6 0.12
43 20 0.41
44 23 0.47
ACGTcount: A:0.58, C:0.07, G:0.01, T:0.34
Consensus pattern (42 bp):
AAAAAATAAAAATACTTAATAAATTACTACATTTTCAAAATC
Found at i:10119349 original size:22 final size:21
Alignment explanation
Indices: 10119311--10119354 Score: 54
Period size: 20 Copynumber: 2.0 Consensus size: 21
10119301 TATATGCTTT
*
10119311 AGAAAAAAAAAATTAAC-TAA
1 AGAAAAAAAAAACTAACATAA
10119331 AGAAAAAGAAAAAGCTAACATAA
1 AGAAAAA-AAAAA-CTAACATAA
10119354 A
1 A
10119355 TCTACATGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 7 0.35
21 5 0.25
22 4 0.20
23 4 0.20
ACGTcount: A:0.73, C:0.07, G:0.09, T:0.11
Consensus pattern (21 bp):
AGAAAAAAAAAACTAACATAA
Found at i:10121400 original size:12 final size:12
Alignment explanation
Indices: 10121383--10121412 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10121373 AGTGATTGAC
10121383 TAAATTGGTGCA
1 TAAATTGGTGCA
10121395 TAAATTGGTGCA
1 TAAATTGGTGCA
*
10121407 CAAATT
1 TAAATT
10121413 AACCAGACAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (12 bp):
TAAATTGGTGCA
Found at i:10121718 original size:60 final size:60
Alignment explanation
Indices: 10121592--10121731 Score: 147
Period size: 60 Copynumber: 2.3 Consensus size: 60
10121582 AAACATCTCT
* * * * *
10121592 CATAAATGATCAAATTATTATAATATCCATTTTATCGTAATTATAAAAATGCTTCTCTTAT
1 CATAATTGATCAAATTA-CATAATATCCATTTTATCATAATTATAAAAATGCTCCTCTTAC
* * * * *
10121653 AATAATTGATCAAATTACATAATTTCTATTTTATCATAATTATGAAAATG-TCCATTTTAC
1 CATAATTGATCAAATTACATAATATCCATTTTATCATAATTATAAAAATGCTCC-TCTTAC
*
10121713 CATAATTAGATAAAATTAC
1 CATAATT-GATCAAATTAC
10121732 TATGATGTCC
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
59 2 0.03
60 38 0.58
61 25 0.38
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (60 bp):
CATAATTGATCAAATTACATAATATCCATTTTATCATAATTATAAAAATGCTCCTCTTAC
Found at i:10122258 original size:21 final size:21
Alignment explanation
Indices: 10122234--10122276 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
10122224 AAGTATCCTC
10122234 TAATCTTCACGAGAGATTACT
1 TAATCTTCACGAGAGATTACT
10122255 TAATCTTCACGAGAGATTACT
1 TAATCTTCACGAGAGATTACT
10122276 T
1 T
10122277 TATGCCCCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (21 bp):
TAATCTTCACGAGAGATTACT
Found at i:10123689 original size:25 final size:27
Alignment explanation
Indices: 10123660--10123725 Score: 86
Period size: 26 Copynumber: 2.6 Consensus size: 27
10123650 TTAATATAAC
10123660 TATTAAAA-TATTAAAAAG-TATTTAT
1 TATTAAAATTATTAAAAAGTTATTTAT
*
10123685 TATTAAAATGTATT--CAAGTTATTTAT
1 TATTAAAAT-TATTAAAAAGTTATTTAT
10123711 TATTAAAATTATTAA
1 TATTAAAATTATTAA
10123726 TATTAAAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
25 15 0.43
26 16 0.46
27 4 0.11
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (27 bp):
TATTAAAATTATTAAAAAGTTATTTAT
Found at i:10123741 original size:17 final size:17
Alignment explanation
Indices: 10123715--10123770 Score: 51
Period size: 17 Copynumber: 3.1 Consensus size: 17
10123705 ATTTATTATT
*
10123715 AAAATTATTAATATTAA
1 AAAATAATTAATATTAA
10123732 AAAATAATT-ATACTTTAA
1 AAAATAATTAATA--TTAA
*
10123750 TAATAATATTTAATATTAA
1 -AA-AATAATTAATATTAA
10123769 AA
1 AA
10123771 TATTATGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
16 3 0.09
17 8 0.25
18 6 0.19
19 6 0.19
20 6 0.19
21 3 0.09
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AAAATAATTAATATTAA
Found at i:10123781 original size:19 final size:18
Alignment explanation
Indices: 10123704--10123791 Score: 69
Period size: 19 Copynumber: 4.9 Consensus size: 18
10123694 GTATTCAAGT
*
10123704 TATTTATTATTAAAAT--
1 TATTTAATATTAAAATAA
10123720 TA-TTAATATTAAAA-AA
1 TATTTAATATTAAAATAA
*
10123736 TAATT-ATACTTTAATAATAA
1 TATTTAATA--TTAA-AATAA
*
10123756 TATTTAATATTAAAATAT
1 TATTTAATATTAAAATAA
*
10123774 TATGTTAATATAAAAATA
1 TAT-TTAATATTAAAATA
10123792 CTTAAAATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
15 11 0.19
16 7 0.12
17 2 0.03
18 11 0.19
19 19 0.32
20 6 0.10
21 3 0.05
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (18 bp):
TATTTAATATTAAAATAA
Found at i:10123842 original size:3 final size:3
Alignment explanation
Indices: 10123836--10124051 Score: 55
Period size: 3 Copynumber: 73.3 Consensus size: 3
10123826 TTTATTAAAA
* * * * *
10123836 TAT TATT TAT TAA TAA TATT TAT TAA TA- TAT TA- TAT TAA TAG TA-
1 TAT TA-T TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
10123880 TAT TATT TAT TAA TAA TA- TAT TATT TAT TAA TA- TAT TA- TAA TAT
1 TAT TA-T TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
* * * *
10123924 TATT TCT TAA TA- TAT TAT TATT TAT TAA TA- TAT TAA TA- TAT TATT
1 TA-T TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT TA-T
* * * *
10123969 TAT TAT TA- TAT TA- TAA TAT TAT TTT TAA TAT TAT ATAT TGAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT T-AT TAT
* * * *
10124014 TA- TAT TAA TAG TA- TAT TATT TAT TAG TA- TAA TAT TAT T
1 TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT T
10124052 TATAAGTAAA
Statistics
Matches: 165, Mismatches: 24, Indels: 48
0.70 0.10 0.20
Matches are distributed among these distances:
2 28 0.17
3 110 0.67
4 27 0.16
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:10123883 original size:59 final size:55
Alignment explanation
Indices: 10123819--10123982 Score: 179
Period size: 59 Copynumber: 2.8 Consensus size: 55
10123809 TATTATTCTT
10123819 TATATTATTTATTAAAATATTATTTATTAATAATATTTATTAATA-TATTATATTAATA
1 TATATTATTTATTAAAATATTATTTATTAAT-ATA-TTA-TAATATTATT-TATTAATA
*
10123877 GTATATTATTTATTAATAATATATTATTTATTAATATATTATAATATTATTTCTTAATA
1 -TATATTATTTATT-A-AA-ATATTATTTATTAATATATTATAATATTATTTATTAATA
* * * *
10123936 TATTATTATTTATTAATATATTAATATATT-ATTTATTATTATATTAT
1 TA-TATTATTTATTAAAATATT-ATTTATTAATATATTATAATATTAT
10123983 AATATTATTT
Statistics
Matches: 94, Mismatches: 5, Indels: 15
0.82 0.04 0.13
Matches are distributed among these distances:
56 20 0.21
57 7 0.07
58 3 0.03
59 36 0.38
60 8 0.09
61 5 0.05
62 15 0.16
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.57
Consensus pattern (55 bp):
TATATTATTTATTAAAATATTATTTATTAATATATTATAATATTATTTATTAATA
Found at i:10123890 original size:23 final size:22
Alignment explanation
Indices: 10123818--10124051 Score: 136
Period size: 23 Copynumber: 11.1 Consensus size: 22
10123808 TTATTATTCT
10123818 TTATATTATT-TATTAA-A-ATA
1 TTAT-TTATTATATTAATATATA
*
10123838 TTATTTATTA-A-TAATATTTA
1 TTATTTATTATATTAATATATA
*
10123858 TTAATATATTATATTAATAGTATA
1 TT-ATTTATTATATTAATA-TATA
10123882 TTATTTATTA-A-T-A-ATATA
1 TTATTTATTATATTAATATATA
10123900 TTATTTATTA-A-T-ATAT-TA
1 TTATTTATTATATTAATATATA
* *
10123918 TAATATTATT-TCTTAATATATTA
1 TTAT-TTATTATATTAATATA-TA
10123941 TTATTTATTAATATATTAATATATTA
1 TTATTTA-T--TATATTAATATA-TA
10123967 TT-TATTATTATATT-ATA-ATA
1 TTAT-TTATTATATTAATATATA
10123987 TTATTT-TTAATATT-ATATAT-
1 TTATTTATT-ATATTAATATATA
* *
10124007 TGA-TAATTATATTAATAGTATA
1 TTATTTATTATATTAATA-TATA
10124029 TTATTTATTAGTA-TAATAT-TA
1 TTATTTATTA-TATTAATATATA
10124050 TT
1 TT
10124052 TATAAGTAAA
Statistics
Matches: 174, Mismatches: 12, Indels: 55
0.72 0.05 0.23
Matches are distributed among these distances:
18 25 0.14
19 23 0.13
20 31 0.18
21 23 0.13
22 11 0.06
23 34 0.20
24 7 0.04
25 3 0.02
26 17 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTATTTATTATATTAATATATA
Found at i:10124709 original size:15 final size:16
Alignment explanation
Indices: 10124688--10124721 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
10124678 GAAAAAAAAA
*
10124688 AAAAATTGATTTATTT
1 AAAATTTGATTTATTT
*
10124704 AAAATTTTATTTATTT
1 AAAATTTGATTTATTT
10124720 AA
1 AA
10124722 TATGTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
AAAATTTGATTTATTT
Found at i:10124861 original size:222 final size:223
Alignment explanation
Indices: 10124472--10124905 Score: 654
Period size: 222 Copynumber: 1.9 Consensus size: 223
10124462 TAAACGGCTA
10124472 ATTTATTTAAAATTTTATTTATGTAACATGCAAATTATTCATTTAATATTTTTGTTAAATTATTT
1 ATTTATTTAAAATTTTATTTATGTAACATGCAAATTATTCATTTAATATTTTTGTTAAATTATTT
* *
10124537 AAGTAAAAGCATTTTAGGTTTATTGCACATAAAATAAATGTAAGAATGAACTTTTATCATAACAT
66 AAGT-AAAGCATTTTAGGTTTATTGCACATAAAATAAATGTAAGAATAAAATTTTATCATAACAT
* * * **
10124602 AATTTTTTTTATATTTTCAATTAAGAACGTATTTTTAACCTTAAAAATGTTATCTTCATTGAAAT
130 AATTTTTTTCATATTTTCAATAAAGAACATATTTTTAACCTTAAAAATGACATCTTCATTGAAAT
*
10124667 TTAAGAATTCTGAAAAAAAAAAAAAATTG
195 TTAAAAATTCTGAAAAAAAAAAAAAATTG
* * * *
10124696 ATTTATTTAAAATTTTATTTATTTAATATGTAAATTATTCATTTAATATTTTTTTTAAATTATTT
1 ATTTATTTAAAATTTTATTTATGTAACATGCAAATTATTCATTTAATATTTTTGTTAAATTATTT
* * * *
10124761 AAGT-AAGTATTTTAGGTTTATTGCACATAAAATATATGTAATAATAAAATTTTATCATACCATA
66 AAGTAAAGCATTTTAGGTTTATTGCACATAAAATAAATGTAAGAATAAAATTTTATCATAACATA
* ** * *
10124825 ATTTTTTTCATATTTTCGATAAAGCCCATGTTTTTAACCTTAAAAATGACATCTTCGTTGAAATT
131 ATTTTTTTCATATTTTCAATAAAGAACATATTTTTAACCTTAAAAATGACATCTTCATTGAAATT
*
10124890 TAAAAATTTTGAAAAA
196 TAAAAATTCTGAAAAA
10124906 CTTTTTTCAT
Statistics
Matches: 188, Mismatches: 22, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
222 123 0.65
224 65 0.35
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (223 bp):
ATTTATTTAAAATTTTATTTATGTAACATGCAAATTATTCATTTAATATTTTTGTTAAATTATTT
AAGTAAAGCATTTTAGGTTTATTGCACATAAAATAAATGTAAGAATAAAATTTTATCATAACATA
ATTTTTTTCATATTTTCAATAAAGAACATATTTTTAACCTTAAAAATGACATCTTCATTGAAATT
TAAAAATTCTGAAAAAAAAAAAAAATTG
Found at i:10124998 original size:72 final size:72
Alignment explanation
Indices: 10124908--10125125 Score: 221
Period size: 72 Copynumber: 3.0 Consensus size: 72
10124898 TTGAAAAACT
*
10124908 TTTTTCATAGTTTTAACAAAAACTATG-ATTTTTATTTTAAAAACATCATCTTTGTTGAATTTTA
1 TTTTTCATA-TTTTAACAAAAA-TATGCATTTTTATTTTAAAAACATTATCTTTGTTGAATTTTA
10124972 AAAAAT-AA
64 AAAAATAAA
* * * * * *
10124980 TTTTTCATATTTTCAACAAAGAT-CGCATTTTGTATCTTAAAAACATTGTCTTTATTAAATTTTA
1 TTTTTCATATTTT-AACAAAAATATGCATTTT-TATTTTAAAAACATTATCTTTGTTGAATTTTA
10125044 AAAAATAAA
64 AAAAATAAA
** * * * *
10125053 AATTTCATATTTTAA-AAAAAGATAGCATTTTTATTTTAGAAAA-GTTATTTTTGTTGAATTTTG
1 TTTTTCATATTTTAACAAAAATAT-GCATTTTTATTTTA-AAAACATTATCTTTGTTGAATTTTA
*
10125116 AAAATTAAA
64 AAAAATAAA
10125125 T
1 T
10125126 AAAAAATAAC
Statistics
Matches: 118, Mismatches: 21, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
70 1 0.01
71 14 0.12
72 79 0.67
73 24 0.20
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (72 bp):
TTTTTCATATTTTAACAAAAATATGCATTTTTATTTTAAAAACATTATCTTTGTTGAATTTTAAA
AAATAAA
Found at i:10147826 original size:28 final size:28
Alignment explanation
Indices: 10147795--10147850 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
10147785 TGCTGAAATA
10147795 TTTCAAAATTTCCACTGATTGAAGTTGT
1 TTTCAAAATTTCCACTGATTGAAGTTGT
*
10147823 TTTCAAAATTTCCACTGGTTGAAGTTGT
1 TTTCAAAATTTCCACTGATTGAAGTTGT
10147851 AAAGTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (28 bp):
TTTCAAAATTTCCACTGATTGAAGTTGT
Found at i:10150406 original size:24 final size:24
Alignment explanation
Indices: 10150374--10150423 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
10150364 TTTTGCAACC
* * *
10150374 AATTCCAATTTTTATGGGTAAAAT
1 AATTCCAATTTCTATAGGAAAAAT
10150398 AATTCCAATTTCTATAGGAAAAAT
1 AATTCCAATTTCTATAGGAAAAAT
10150422 AA
1 AA
10150424 ATTTTTATTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (24 bp):
AATTCCAATTTCTATAGGAAAAAT
Found at i:10153952 original size:20 final size:20
Alignment explanation
Indices: 10153926--10153972 Score: 67
Period size: 21 Copynumber: 2.3 Consensus size: 20
10153916 ACTTTTTTCC
*
10153926 TTTTTTTCCTTTTATATTTAA
1 TTTTTTTCCTTATAT-TTTAA
*
10153947 TTTTTTTGCTTATATTTTAA
1 TTTTTTTCCTTATATTTTAA
10153967 TTTTTT
1 TTTTTT
10153973 AAGAGCTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTTTCCTTATATTTTAA
Found at i:10154226 original size:34 final size:35
Alignment explanation
Indices: 10154183--10154252 Score: 99
Period size: 34 Copynumber: 2.0 Consensus size: 35
10154173 AAATATTTAT
*
10154183 TAAATATAAAA-AAAAGAAAAAAAAAAG-AAAGAAA
1 TAAACATAAAACAAAA-AAAAAAAAAAGAAAAGAAA
10154217 TAAACATAAAACAAAAAAAAAAAAAAGCAAAAGAAA
1 TAAACATAAAACAAAAAAAAAAAAAAG-AAAAGAAA
10154253 AAAGTTGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 21 0.66
35 4 0.12
36 7 0.22
ACGTcount: A:0.81, C:0.04, G:0.07, T:0.07
Consensus pattern (35 bp):
TAAACATAAAACAAAAAAAAAAAAAAGAAAAGAAA
Found at i:10154658 original size:25 final size:25
Alignment explanation
Indices: 10154630--10154682 Score: 81
Period size: 25 Copynumber: 2.1 Consensus size: 25
10154620 ATTATTTATT
10154630 AAAT-ACATAAAAATTAAAAATTAAA
1 AAATGACA-AAAAATTAAAAATTAAA
*
10154655 AAATGAGAAAAAATTAAAAATTAAA
1 AAATGACAAAAAATTAAAAATTAAA
10154680 AAA
1 AAA
10154683 AAAAACCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
25 24 0.92
26 2 0.08
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (25 bp):
AAATGACAAAAAATTAAAAATTAAA
Found at i:10154683 original size:18 final size:18
Alignment explanation
Indices: 10154645--10154685 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10154635 CATAAAAATT
* *
10154645 AAAAATTAAAAAATGAGA
1 AAAAATTAAAAAATAAAA
*
10154663 AAAAATTAAAAATTAAAA
1 AAAAATTAAAAAATAAAA
10154681 AAAAA
1 AAAAA
10154686 AACCACATAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (18 bp):
AAAAATTAAAAAATAAAA
Found at i:10162007 original size:101 final size:100
Alignment explanation
Indices: 10161807--10162031 Score: 249
Period size: 101 Copynumber: 2.2 Consensus size: 100
10161797 TTGTACAAAC
* * *
10161807 AACACCAACAACTGTAGAGACACCAAGAAGGTCAAGGGGTAAACATTTAAAGAGTTCAATAGGTA
1 AACACCAACACCTATAGAGACACCAAGAAGGTCAAGAGGTAAACATTTAAAGAGTTCAATAGGTA
* * * *
10161872 GAAAAACAGCATCTGTAGAAATAATAACCTTTATAGA
66 GAAAAACA-CATCTGTAAAAACAACAACCCTTATA-A
* * * * *
10161909 AACACCAGCACCTATAGAGACACCAAGAGGGTCAA-AGGTAGAA-GTTTAAGGGGTTCAATAGGT
1 AACACCAACACCTATAGAGACACCAAGAAGGTCAAGAGGTA-AACATTTAAAGAGTTCAATAGGT
10161972 AGAAAAACA-ATACTTGTAAAAACAACAACCCTTATAA
65 AGAAAAACACAT-C-TGTAAAAACAACAACCCTTATAA
* *
10162009 AGACACTAACACCTATAAAGACA
1 A-ACACCAACACCTATAGAGACA
10162032 TCAATCATTA
Statistics
Matches: 104, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
99 2 0.02
100 3 0.03
101 66 0.63
102 33 0.32
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (100 bp):
AACACCAACACCTATAGAGACACCAAGAAGGTCAAGAGGTAAACATTTAAAGAGTTCAATAGGTA
GAAAAACACATCTGTAAAAACAACAACCCTTATAA
Found at i:10164722 original size:40 final size:39
Alignment explanation
Indices: 10164635--10164732 Score: 101
Period size: 40 Copynumber: 2.5 Consensus size: 39
10164625 AGGAAAAATT
* *
10164635 TTAAAATTTAAGAATTTTTTTTTAATTTTTTAAATTTTTA
1 TTAAAATTT-TGAATTTTTTTTTAATTTTTTAAATTTTCA
* *
10164675 TTAAAATTTTGAGATTTTTTTTTCATTTTTTTTAAGTTTTCA
1 TTAAAATTTTGA-ATTTTTTTTT-A-ATTTTTTAAATTTTCA
*
10164717 -T-AAATTTTTAATTTTT
1 TTAAAATTTTGAATTTTT
10164733 ATTATTTCTA
Statistics
Matches: 50, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
39 8 0.16
40 27 0.54
41 2 0.04
42 13 0.26
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (39 bp):
TTAAAATTTTGAATTTTTTTTTAATTTTTTAAATTTTCA
Found at i:10165409 original size:20 final size:19
Alignment explanation
Indices: 10165381--10165476 Score: 93
Period size: 20 Copynumber: 4.7 Consensus size: 19
10165371 GGTATGCCTA
10165381 TTTTATTTTTATTTTATAT
1 TTTTATTTTTATTTTATAT
10165400 TTTATATTTTTATTTTTATAT
1 TTT-TATTTTTA-TTTTATAT
*
10165421 TTTTATTTTATATTTCATAT
1 TTTTATTTT-TATTTTATAT
* * *
10165441 TTTTTTCTTTGTATCTTATGT
1 TTTTAT-TTT-TATTTTATAT
*
10165462 ATTTATTATTTATTT
1 TTTTATT-TTTATTT
10165477 ATTTATTATT
Statistics
Matches: 63, Mismatches: 9, Indels: 9
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.05
20 31 0.49
21 29 0.46
ACGTcount: A:0.21, C:0.03, G:0.02, T:0.74
Consensus pattern (19 bp):
TTTTATTTTTATTTTATAT
Found at i:10165412 original size:8 final size:7
Alignment explanation
Indices: 10165384--10165443 Score: 81
Period size: 7 Copynumber: 8.9 Consensus size: 7
10165374 ATGCCTATTT
10165384 TATTTT-
1 TATTTTA
10165390 TATTTTA
1 TATTTTA
10165397 TATTTTA
1 TATTTTA
10165404 TATTTT-
1 TATTTTA
10165410 TATTTTTA
1 TA-TTTTA
10165418 TATTTT-
1 TATTTTA
10165424 TATTTTA
1 TATTTTA
*
10165431 TATTTCA
1 TATTTTA
10165438 TATTTT
1 TATTTT
10165444 TTTCTTTGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
6 14 0.29
7 32 0.67
8 2 0.04
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (7 bp):
TATTTTA
Found at i:10165474 original size:4 final size:4
Alignment explanation
Indices: 10165456--10165629 Score: 59
Period size: 4 Copynumber: 45.0 Consensus size: 4
10165446 TCTTTGTATC
* * *
10165456 TTAT GTAT TTA- TTAT TTAT TTAT TTA- TTAT TACTAT TTAT TAAT ATAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T--TAT TTAT TTAT TTAT
* * * * * *
10165504 GTA- TTAT GTT-T TTAT GTTA- ATAT ATAT TTA- TTA- TTAC TTAG CTAT
1 TTAT TTAT -TTAT TTAT -TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* * * *
10165549 TTAT ATA- TTAT TATAT ATAT GTAT TTA- TTA- TTAT TTAT CTAT TTAT
1 TTAT TTAT TTAT T-TAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* *
10165595 ATAT TATAAT TTAT CTA- TTAT TTA- TT-T TTAT TTAT
1 TTAT T-T-AT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
10165630 CTGATTATTT
Statistics
Matches: 128, Mismatches: 24, Indels: 36
0.68 0.13 0.19
Matches are distributed among these distances:
3 32 0.25
4 79 0.62
5 10 0.08
6 7 0.05
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (4 bp):
TTAT
Found at i:10165639 original size:22 final size:21
Alignment explanation
Indices: 10165528--10165656 Score: 120
Period size: 22 Copynumber: 6.1 Consensus size: 21
10165518 TGTTAATATA
* *
10165528 TATTTATTATTACTTAGCTAT
1 TATTTATTATTATTTATCTAT
* *
10165549 T-TATA-TATTATTATATATAT
1 TATTTATTATTATT-TATCTAT
10165569 GTATTTATTATTATTTATCTATT
1 -TATTTATTATTATTTATCTA-T
* *
10165592 TATATATTATAATTTATCTAT
1 TATTTATTATTATTTATCTAT
*
10165613 TATTTATTTTTATTTATCTGAT
1 TATTTATTATTATTTATCT-AT
* *
10165635 TATTT-TTTTTAATTATCTAT
1 TATTTATTATTATTTATCTAT
10165655 TA
1 TA
10165657 ACATTTTTTA
Statistics
Matches: 90, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
19 6 0.07
20 12 0.13
21 31 0.34
22 33 0.37
23 8 0.09
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (21 bp):
TATTTATTATTATTTATCTAT
Found at i:10166578 original size:4 final size:5
Alignment explanation
Indices: 10166558--10166603 Score: 58
Period size: 5 Copynumber: 8.8 Consensus size: 5
10166548 GTTTAATACT
10166558 TTTTA TTTTA TTTTA -TTTA TTTTTA TTTTTA TTTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA -TTTTA -TTTTA -TTTTA TTTTA TTTT
10166604 CTTTAAATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.10
5 19 0.49
6 16 0.41
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:10166582 original size:6 final size:6
Alignment explanation
Indices: 10166557--10166603 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
10166547 TGTTTAATAC
*
10166557 TTTTTA TTTTATT TTATTTA TTTTTA TTTTTA TTTTTA -TTTTA TTTT
1 TTTTTA TTTT-TA TT-TTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
10166604 CTTTAAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
5 5 0.14
6 23 0.64
7 6 0.17
8 2 0.06
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:10166695 original size:58 final size:58
Alignment explanation
Indices: 10166622--10166836 Score: 314
Period size: 58 Copynumber: 3.8 Consensus size: 58
10166612 AAAATTCAAA
*
10166622 AAAAAATATTTTTGAGGAAGAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* * * *
10166680 AAAAAATATTTTTGAGAAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
*
10166738 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT-AAATATAAG-TTT-T
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA-ATAAGCTTTCT
*
10166794 CAAAAATA-TTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTG
10166837 CACAAAAGCA
Statistics
Matches: 145, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
54 2 0.01
55 30 0.21
56 8 0.06
57 6 0.04
58 99 0.68
ACGTcount: A:0.42, C:0.07, G:0.13, T:0.38
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
Found at i:10177256 original size:17 final size:17
Alignment explanation
Indices: 10177230--10177287 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
10177220 ACTATGCTTG
10177230 AAAT-AAAAAAAAATAA
1 AAATGAAAAAAAAATAA
10177246 AAATGAAAAAAAAATAA
1 AAATGAAAAAAAAATAA
10177263 AAA-GAAAAAAGTAAATGAA
1 AAATGAAAAAA--AAAT-AA
10177282 AAATGA
1 AAATGA
10177288 GGATTTAAGG
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
16 11 0.30
17 15 0.41
18 4 0.11
19 5 0.14
20 2 0.05
ACGTcount: A:0.79, C:0.00, G:0.09, T:0.12
Consensus pattern (17 bp):
AAATGAAAAAAAAATAA
Found at i:10178275 original size:22 final size:22
Alignment explanation
Indices: 10178235--10178280 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
10178225 AATTTTCTGA
*
10178235 AACTCCTTCAAACACGATTTTC
1 AACTCCTTCAAACACGATTGTC
* * *
10178257 AACTCCTTTAGACATGATTGTC
1 AACTCCTTCAAACACGATTGTC
10178279 AA
1 AA
10178281 GGAGCCGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (22 bp):
AACTCCTTCAAACACGATTGTC
Found at i:10178315 original size:40 final size:41
Alignment explanation
Indices: 10178291--10178488 Score: 154
Period size: 42 Copynumber: 4.6 Consensus size: 41
10178281 GGAGCCGTTT
10178291 ATTTTCAAAGT-TTGAGCCTCTGA-TTAGAGGAGCTTCATTC
1 ATTTTCAAAGTCTTGAGCCTCTGATTTAGAGGAGC-TCATTC
* * *
10178331 ATTTTCAAAGTCGTTGAGCCTCTGA-TTAGATGAGCTTTATTT
1 ATTTTCAAAGTC-TTGAGCCTCTGATTTAGAGGAGC-TCATTC
* * * *
10178373 ATTTTTCAATGTCGTTGAGCCTCTGA-TTAGAAGAGCTTTATTT
1 A-TTTTCAAAGTC-TTGAGCCTCTGATTTAGAGGAGC-TCATTC
* * *
10178416 ATTTTCAAAGTTGTTGAGCCTCTGA-TTAGAGGAGCTTTGTTTATTT
1 ATTTTCAAAG-TCTTGAGCCTCTGATTTAGAGGAGC-----TCATTC
10178462 ATTTTCAAAGTCGTTGAGCCTCTGATT
1 ATTTTCAAAGTC-TTGAGCCTCTGATT
10178489 AAAAGAATTT
Statistics
Matches: 139, Mismatches: 9, Indels: 13
0.86 0.06 0.08
Matches are distributed among these distances:
40 11 0.08
42 56 0.40
43 41 0.29
45 1 0.01
46 29 0.21
47 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.20, T:0.42
Consensus pattern (41 bp):
ATTTTCAAAGTCTTGAGCCTCTGATTTAGAGGAGCTCATTC
Found at i:10178393 original size:43 final size:43
Alignment explanation
Indices: 10178288--10178632 Score: 396
Period size: 43 Copynumber: 8.0 Consensus size: 43
10178278 CAAGGAGCCG
*
10178288 TTTA-TTTTCAAAGT--TTGAGCCTCTGATTAGAGGAGCTTCA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
* *
10178328 TTCA-TTTTCAAAGTCGTTGAGCCTCTGATTAGATGAGCTTTA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
* *
10178370 TTTATTTTTCAATGTCGTTGAGCCTCTGATTAGAAGAGCTTTA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
* *
10178413 TTTA-TTTTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
* * **
10178455 TTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAAAAGAATTTTTA
1 TTTA--T-TTTTCAAAGTCGTTGAGCCTCTGATT-AGAGGAGCTTTA
* * *
10178502 TTT-TTCTTACAAAAGTCGTGGAGCCTCTGATTAGAGGAGTTTTA
1 TTTATT-TTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
* * *
10178546 TTTATTTTTCAAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
* * *
10178589 TTTATGTTTTTTAAAGTCGTTGAGCATCTGCTTAGAGGAGCTTT
1 TTTA--TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTT
10178633 GATCAAAATT
Statistics
Matches: 260, Mismatches: 32, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
40 13 0.05
42 65 0.25
43 73 0.28
44 19 0.07
45 55 0.21
46 25 0.10
47 10 0.04
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (43 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTA
Found at i:10178399 original size:85 final size:85
Alignment explanation
Indices: 10178288--10178632 Score: 401
Period size: 88 Copynumber: 4.0 Consensus size: 85
10178278 CAAGGAGCCG
* *
10178288 TTTA-TTTTCAAAGT--TTGAGCCTCTGATTAGAGGAGCTTCATTCATTTTCAAAGTCGTTGAGC
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGC
*
10178350 CTCTGATTAGATGAGCTTTA
66 CTCTGATTAGAGGAGCTTTA
* * *
10178370 TTTATTTTTCAATGTCGTTGAGCCTCTGATTAGAAGAGCTTTATTTATTTTCAAAGTTGTTGAGC
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGC
*
10178435 CTCTGATTAGAGGAGCTTTG
66 CTCTGATTAGAGGAGCTTTA
* * **
10178455 TTTATTTATTTTCAAAGTCGTTGAGCCTCTGATTAAAAGAATTTTTATTT-TTCTTACAAAAGTC
1 TTTA--T-TTTTCAAAGTCGTTGAGCCTCTGATT-AGAGGAGCTTTATTTATT-TT-C-AAAGTC
* *
10178519 GTGGAGCCTCTGATTAGAGGAGTTTTA
59 GTTGAGCCTCTGATTAGAGGAGCTTTA
* * * *
10178546 TTTATTTTTCAAAGTTGTTGAGCCTTTGATTAGAGGAGCTTTGTTTATGTTTTTTAAAGTCGTTG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA---TTTTCAAAGTCGTTG
* *
10178611 AGCATCTGCTTAGAGGAGCTTT
63 AGCCTCTGATTAGAGGAGCTTT
10178633 GATCAAAATT
Statistics
Matches: 220, Mismatches: 29, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
82 4 0.02
83 9 0.04
85 66 0.30
87 11 0.05
88 79 0.36
89 13 0.06
90 3 0.01
91 35 0.16
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (85 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTATTTTCAAAGTCGTTGAGC
CTCTGATTAGAGGAGCTTTA
Found at i:10178850 original size:23 final size:23
Alignment explanation
Indices: 10178802--10178879 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 23
10178792 AGGCCCATTT
10178802 TATTTTTA-TTTTATA-TTT-TA
1 TATTTTTATTTTTATATTTTATA
10178822 TATTTTTATTTTTATATTTTATA
1 TATTTTTATTTTTATATTTTATA
* * *
10178845 TA-TTTTATTCTTTGTATCTTATG
1 TATTTTTATT-TTTATATTTTATA
10178868 TATTTATTATTT
1 TATTT-TTATTT
10178880 ATTTATTATT
Statistics
Matches: 49, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
20 8 0.16
21 7 0.14
22 10 0.20
23 16 0.33
24 3 0.06
25 5 0.10
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.72
Consensus pattern (23 bp):
TATTTTTATTTTTATATTTTATA
Found at i:10178880 original size:7 final size:7
Alignment explanation
Indices: 10178800--10179059 Score: 66
Period size: 7 Copynumber: 35.9 Consensus size: 7
10178790 GTAGGCCCAT
10178800 TTTATT-
1 TTTATTA
10178806 TTTATT-
1 TTTATTA
10178812 TTATATT-
1 TT-TATTA
10178819 TTATATT-
1 TT-TATTA
10178826 TTTATT-
1 TTTATTA
10178832 TTTA-TA
1 TTTATTA
10178838 TTTTATATA
1 -TTTAT-TA
*
10178847 TTTTATTC
1 -TTTATTA
*
10178855 TTT-GTA
1 TTTATTA
10178861 TCTTATGTA
1 T-TTAT-TA
10178870 TTTATTA
1 TTTATTA
10178877 TTTATTTA
1 TTTA-TTA
*
10178885 TTATTACTA
1 -T-TTATTA
10178894 TTTATTAA
1 TTTATT-A
*
10178902 TATATGTA
1 TTTAT-TA
10178910 -TTATT-
1 TTTATTA
*
10178915 TTTTTTA
1 TTTATTA
*
10178922 TGTTAATA
1 T-TTATTA
*
10178930 TATATTTA
1 TTTA-TTA
10178938 TTTATTA
1 TTTATTA
*
10178945 CTTAGCTTA
1 TTTA--TTA
10178954 TTTATATA
1 TTTAT-TA
10178962 TTTA-TA
1 TTTATTA
*
10178968 TATA-TA
1 TTTATTA
*
10178974 TAGTATT-
1 T-TTATTA
10178981 TATTATTA
1 T-TTATTA
10178989 TTTATCTA
1 TTTAT-TA
10178997 TTTATATA
1 TTTAT-TA
*
10179005 TATTATAA
1 T-TTATTA
10179013 TTTATCTA
1 TTTAT-TA
10179021 -TTATTTA
1 TTTA-TTA
10179028 TTT-TTA
1 TTTATTA
10179034 TTTATCT-
1 TTTAT-TA
* *
10179041 GTTAATA
1 TTTATTA
10179048 TTT-TTA
1 TTTATTA
10179054 TTTATT
1 TTTATT
10179060 TGATTATTTT
Statistics
Matches: 196, Mismatches: 26, Indels: 63
0.69 0.09 0.22
Matches are distributed among these distances:
5 1 0.01
6 43 0.22
7 74 0.38
8 50 0.26
9 25 0.13
10 3 0.02
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (7 bp):
TTTATTA
Found at i:10178881 original size:4 final size:4
Alignment explanation
Indices: 10178863--10179083 Score: 63
Period size: 4 Copynumber: 56.2 Consensus size: 4
10178853 TCTTTGTATC
* * * *
10178863 TTAT GTAT TTA- TTAT TTAT TTA- TTAT TACTAT TTAT TAAT ATAT GTA-
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT T--TAT TTAT TTAT TTAT TTAT
* * * * *
10178910 TTATT TTTT TTAT GTTA- ATAT ATAT TTAT TTA- TTAC TTAGC TTAT TTAT
1 TTA-T TTAT TTAT -TTAT TTAT TTAT TTAT TTAT TTAT TTA-T TTAT TTAT
* * * * * *
10178959 ATAT TTAT ATAT ATAT AGTAT TTA- TTA- TTAT TTAT CTAT TTAT ATAT
1 TTAT TTAT TTAT TTAT -TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* * * * *
10179006 ATTA- TAAT TTAT CTA- TTAT TTA- TT-T TTAT TTAT CTGT TAAT ATT-T
1 -TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT -TTAT
* * *
10179051 TTAT TTAT TTGA- TTAT TTTT TTAA TTAT CTAT T
1 TTAT TTAT TT-AT TTAT TTAT TTAT TTAT TTAT T
10179084 AACATTTTTT
Statistics
Matches: 159, Mismatches: 37, Indels: 42
0.67 0.16 0.18
Matches are distributed among these distances:
3 30 0.19
4 109 0.69
5 16 0.10
6 4 0.03
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (4 bp):
TTAT
Found at i:10178897 original size:24 final size:23
Alignment explanation
Indices: 10178800--10179067 Score: 97
Period size: 24 Copynumber: 11.9 Consensus size: 23
10178790 GTAGGCCCAT
*
10178800 TTTATT-TTTATTTTATATTTTATA
1 TTTATTATTTA-TTTAT-TATTATA
*
10178824 TTT-TTATTT-TTATATTTTATATA
1 TTTATTATTTATT-TATTAT-TATA
* * * * *
10178847 TTTTATTCTTTGTATCTTA-TGTA
1 -TTTATTATTTATTTATTATTATA
10178870 TTTATTATTTATTTATTATTACTA
1 TTTATTATTTATTTATTATTA-TA
* *
10178894 TTTATTAATATATGTATTATT-T-
1 TTTATT-ATTTATTTATTATTATA
*
10178916 TTT-TTATGTTA-ATATATATT-TA
1 TTTATTAT-TTATTTAT-TATTATA
* *
10178938 TTTATTACTTAGCTTATT-TATATA
1 TTTATTATTTA-TTTATTAT-TATA
* * *
10178962 TTTA-TATATATATAGTATT-TA
1 TTTATTATTTATTTATTATTATA
*
10178983 -TTATTATTTATCTATT-TATATA
1 TTTATTATTTATTTATTAT-TATA
* *
10179005 TATTATAATTTATCTATTATT-TA
1 T-TTATTATTTATTTATTATTATA
* *
10179028 TTT-TTATTTATCTGTTA--ATA
1 TTTATTATTTATTTATTATTATA
10179048 TTT-TTATTTATTTGATTATT
1 TTTATTATTTATTT-ATTATT
10179068 TTTTTAATTA
Statistics
Matches: 187, Mismatches: 29, Indels: 57
0.68 0.11 0.21
Matches are distributed among these distances:
20 23 0.12
21 36 0.19
22 37 0.20
23 27 0.14
24 42 0.22
25 21 0.11
26 1 0.01
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.66
Consensus pattern (23 bp):
TTTATTATTTATTTATTATTATA
Found at i:10178966 original size:44 final size:43
Alignment explanation
Indices: 10178927--10179029 Score: 118
Period size: 45 Copynumber: 2.3 Consensus size: 43
10178917 TTTTATGTTA
10178927 ATATA-TATTTATTTATTACTTAGCTTATTTATATATTTATATAT
1 ATATAGTATTTA-TTATTACTTAGC-TATTTATATATTTATATAT
* * *
10178971 ATATAGTATTTATTATTATTTATCTATTTATATATATTATAATTT
1 ATATAGTATTTATTATTACTTAGCTATTTATATAT-TTAT-ATAT
* *
10179016 ATCTATTATTTATT
1 ATATAGTATTTATT
10179030 TTTATTTATC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
43 11 0.22
44 19 0.37
45 21 0.41
ACGTcount: A:0.34, C:0.04, G:0.02, T:0.60
Consensus pattern (43 bp):
ATATAGTATTTATTATTACTTAGCTATTTATATATTTATATAT
Found at i:10178999 original size:35 final size:35
Alignment explanation
Indices: 10178951--10179028 Score: 115
Period size: 35 Copynumber: 2.2 Consensus size: 35
10178941 ATTACTTAGC
10178951 TTATTTATATATTTATATATA-TATAGTATTTAT-TA
1 TTATTTATATATTTATATATATTATA--ATTTATCTA
*
10178986 TTATTTATCTATTTATATATATTATAATTTATCTA
1 TTATTTATATATTTATATATATTATAATTTATCTA
10179021 TTATTTAT
1 TTATTTAT
10179029 TTTTATTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
34 6 0.15
35 30 0.75
36 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.62
Consensus pattern (35 bp):
TTATTTATATATTTATATATATTATAATTTATCTA
Found at i:10179051 original size:20 final size:20
Alignment explanation
Indices: 10178981--10179097 Score: 92
Period size: 20 Copynumber: 5.5 Consensus size: 20
10178971 ATATAGTATT
*
10178981 TATTATTATTTATCTATTTATA
1 TATTTTTATTTATCTA-TTA-A
* *
10179003 TATATTATAATTTATCTATTATT
1 TAT-TT-TTATTTATCTATTA-A
*
10179026 TATTTTTATTTATCTGTTAA
1 TATTTTTATTTATCTATTAA
*
10179046 TATTTTTATTTATTTGATT-A
1 TATTTTTATTTATCT-ATTAA
* *
10179066 TTTTTTTAATTATCTATTAA
1 TATTTTTATTTATCTATTAA
*
10179086 CATTTTTTATTT
1 TA-TTTTTATTT
10179098 GATTTGATTT
Statistics
Matches: 76, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
19 3 0.04
20 28 0.37
21 22 0.29
22 5 0.07
23 8 0.11
24 10 0.13
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (20 bp):
TATTTTTATTTATCTATTAA
Found at i:10179079 original size:40 final size:42
Alignment explanation
Indices: 10179028--10179114 Score: 117
Period size: 40 Copynumber: 2.1 Consensus size: 42
10179018 CTATTATTTA
* * *
10179028 TTTTTATTTATCTGTTAATA-TTTTTATTT-ATTTGATTATT-
1 TTTTTAATTATCTATTAACATTTTTTATTTGATTTGATT-TTC
10179068 TTTTTAATTATCTATTAACATTTTTTATTTGATTTGATTTTC
1 TTTTTAATTATCTATTAACATTTTTTATTTGATTTGATTTTC
10179110 TTTTT
1 TTTTT
10179115 CTTTTTTTTG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
40 17 0.41
41 11 0.27
42 13 0.32
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.69
Consensus pattern (42 bp):
TTTTTAATTATCTATTAACATTTTTTATTTGATTTGATTTTC
Found at i:10179959 original size:12 final size:10
Alignment explanation
Indices: 10179943--10180053 Score: 58
Period size: 10 Copynumber: 11.2 Consensus size: 10
10179933 GTTCTCAGGT
10179943 TTATTTATTTA
1 TTATTTA-TTA
10179954 TTTATTTATTA
1 -TTATTTATTA
10179965 TTA-TTATTA
1 TTATTTATTA
10179974 TTATTTATTGA
1 TTATTTATT-A
* **
10179985 TTAGATTAGAA
1 TTA-TTTATTA
* *
10179996 TTGTTTAATA
1 TTATTTATTA
10180006 CTT-TTTATT-
1 -TTATTTATTA
10180015 TTATTT-TTA
1 TTATTTATTA
10180024 TT-TTTATTTA
1 TTATTTA-TTA
10180034 TT-TTTATT-
1 TTATTTATTA
10180042 TTCATTT-TTA
1 TT-ATTTATTA
10180052 TT
1 TT
10180054 TCTTTAAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 24
0.71 0.07 0.21
Matches are distributed among these distances:
8 9 0.11
9 18 0.22
10 31 0.39
11 12 0.15
12 10 0.12
ACGTcount: A:0.25, C:0.02, G:0.04, T:0.69
Consensus pattern (10 bp):
TTATTTATTA
Found at i:10179992 original size:19 final size:19
Alignment explanation
Indices: 10179955--10179992 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
10179945 ATTTATTTAT
*
10179955 TTATTTATTATTATTATTA
1 TTATTTATTATTATGATTA
10179974 TTATTTATTGATTA-GATTA
1 TTATTTATT-ATTATGATTA
10179993 GAATTGTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTATTTATTATTATGATTA
Found at i:10180022 original size:6 final size:6
Alignment explanation
Indices: 10180007--10180054 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
10179997 TGTTTAATAC
*
10180007 TTTTTA -TTTTA TTTTTA TTTTTA --TTTA TTTTTA TTTTCA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
10180052 TTT
1 TTT
10180055 CTTTAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
4 4 0.11
5 5 0.14
6 28 0.76
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:10180033 original size:16 final size:16
Alignment explanation
Indices: 10180007--10180048 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
10179997 TGTTTAATAC
10180007 TTTTTATTTTATTTTTA
1 TTTTTA-TTTATTTTTA
10180024 TTTTTATTTATTTTTA
1 TTTTTATTTATTTTTA
*
10180040 TTTTCATTT
1 TTTTTATTT
10180049 TTATTTCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 18 0.75
17 6 0.25
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTATTTATTTTTA
Found at i:10180041 original size:22 final size:21
Alignment explanation
Indices: 10180009--10180054 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
10179999 TTTAATACTT
*
10180009 TTTATTTTATTTTTATTTTTA
1 TTTATTTTATTTTCATTTTTA
10180030 TTTATTTTTATTTTCATTTTTA
1 TTTA-TTTTATTTTCATTTTTA
10180052 TTT
1 TTT
10180055 CTTTAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTATTTTATTTTCATTTTTA
Found at i:10180193 original size:59 final size:59
Alignment explanation
Indices: 10180071--10180229 Score: 218
Period size: 58 Copynumber: 2.7 Consensus size: 59
10180061 ATAAAATTCA
* *
10180071 AAAAAAATATTTTTG-AGAAAAAGTTGAAAGTATCAA-TTTTCTTTGAAAATAAGCTTTC
1 AAAAAAATATTTTTGAAG-AAAAGTTAAAAGTATCAATTTTTCTTCGAAAATAAGCTTTC
* *
10180129 TAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTC-TCGAAATTAAAG-TTTC
1 AAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTCTTCGAAAAT-AAGCTTTC
*
10180187 AAAAAAATATTTTTTGAAAAAAAGTTAAAAGTATCAATTTTTC
1 AAAAAAATA-TTTTTGAAGAAAAGTTAAAAGTATCAATTTTTC
10180230 CTGNNNNNNN
Statistics
Matches: 91, Mismatches: 6, Indels: 7
0.88 0.06 0.07
Matches are distributed among these distances:
58 49 0.54
59 42 0.46
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (59 bp):
AAAAAAATATTTTTGAAGAAAAGTTAAAAGTATCAATTTTTCTTCGAAAATAAGCTTTC
Found at i:10182758 original size:94 final size:91
Alignment explanation
Indices: 10182598--10183078 Score: 295
Period size: 94 Copynumber: 5.3 Consensus size: 91
10182588 TAGAATACTA
* * * * *
10182598 GATAAAATATA-AAAATAAATTATACT-T-AAAACTTAAAAAAACTTAT---T-A-AAAATATAA
1 GATAAAATATATTAAATATATTATA-TATAAAAAATTAAAAAAACTTATAAATAAGAAAATTTTA
10182655 AATTTATTTATTTTAAACTATAAAATT
65 AATTTATTTATTTTAAACTATAAAATT
* * * *
10182682 GATAAAATATATTAAAGTTATATCATATTTAAAAAATTCAAAAAACCATT-TAAA-AATAAAATT
1 GATAAAATATATTAAA--TATATTATATATAAAAAATT-AAAAAAAC-TTATAAATAAGAAAATT
*
10182745 TTGAAATTTATTTATTTTAAA-TCATAAAACTA
62 TT-AAATTTATTTATTTTAAACT-ATAAAA-TT
* * *
10182777 GATAAAATATA-CAAATATATTATATCTAAAAAATTAAAAAAAACTTCATAAATTAGAAAATTTT
1 GATAAAATATATTAAATATATTATATATAAAAAATT-AAAAAAACTT-ATAAATAAGAAAATTTT
*
10182841 AGAATTTATTTATTTTAAACTATAAATTTT
64 A-AATTTATTTATTTTAAACTATAAA-ATT
* * * **
10182871 GACAAAATATATTAAACTATATTATATAT-AAAAATTAAAAATA-TT-CAAAT-AGAAGTTTTTT
1 GATAAAATATATTAAA-TATATTATATATAAAAAATTAAAAAAACTTATAAATAAGAA-AATTTT
* * * * * *
10182932 ATATTTGTTTATTTCAAATTATTATATTT
64 AAATTTATTTATTTTAAACTA-TAAAATT
* * * * *
10182961 GATAAAA-ATATTTAAGTATATATTATATTTTAAAAAAAT-AAAAATCTTCTTAAAAAATAGAAA
1 GATAAAATATA-TTAA--ATATATTATA-TATAAAAAATTAAAAAAACTT-AT-AAATA-AGAAA
* * *
10183024 ATTTTAAATTT-TTTA-TTTGAATTATAATATT
59 ATTTTAAATTTATTTATTTTAAACTATAAAATT
* *
10183055 TAT-AAATATATTAAA-ATTTTATAT
1 GATAAAATATATTAAATATATTATAT
10183079 TATGTTTAAA
Statistics
Matches: 314, Mismatches: 46, Indels: 69
0.73 0.11 0.16
Matches are distributed among these distances:
84 11 0.04
85 3 0.01
86 1 0.00
87 8 0.03
88 6 0.02
89 12 0.04
90 42 0.13
91 24 0.08
92 33 0.11
93 29 0.09
94 84 0.27
95 30 0.10
96 18 0.06
97 9 0.03
98 4 0.01
ACGTcount: A:0.51, C:0.04, G:0.03, T:0.41
Consensus pattern (91 bp):
GATAAAATATATTAAATATATTATATATAAAAAATTAAAAAAACTTATAAATAAGAAAATTTTAA
ATTTATTTATTTTAAACTATAAAATT
Found at i:10182997 original size:188 final size:185
Alignment explanation
Indices: 10182654--10183041 Score: 401
Period size: 188 Copynumber: 2.1 Consensus size: 185
10182644 TAAAAATATA
* * *
10182654 AAATTTATTTATTTTAAACTATAAAATTGATAAAATATATTAAAGTTATATCATATTTAAAAAAT
1 AAATTTATTTATTTTAAACTATAAAATTGACAAAATATATTAAAGCTATATCATATATAAAAAAT
* * *
10182719 TCAAAAAACCATTTAAAAATAAAATTTTGAAATTTATTTATTTTAAATCATAAAACTAGATAAAA
66 T-AAAAAACCATTCAAAAAGAAAATTTTGAAATTTATTTATTTCAAATCATAAAACTAGATAAAA
* *
10182784 TATACAAATATATTATATCTAAAAAATTAAAAAAAACTTC-ATAAATTAGAAAATTTT
130 TATACAAATATATTATATCTAAAAAA--AAAAAAAACTTCTAAAAAATAGAAAATTTT
* *
10182841 AGAATTTATTTATTTTAAACTATAAATTTTGACAAAATATATTAAA-CTATATTATATAT-AAAA
1 A-AATTTATTTATTTTAAACTATAAA-ATTGACAAAATATATTAAAGCTATATCATATATAAAAA
* * ** * * * * * * * *
10182904 ATT-AAAAA-TATTCAAATAGAAGTTTTTTATATTTGTTTATTTCAAATTATTATATTTGATAAA
64 ATTAAAAAACCATTCAAAAAGAAAATTTTGAAATTTATTTATTTCAAATCATAAAACTAGAT-AA
** * * *
10182967 AATATTTAAGTATATATTATATTTTAAAAAAATAAAAATCTTCTTAAAAAATAGAAAATTTT
128 AATATACAA--ATATATTATA-TCTAAAAAAAAAAAAAACTTC-TAAAAAATAGAAAATTTT
10183029 AAATTT-TTTATTT
1 AAATTTATTTATTT
10183042 GAATTATAAT
Statistics
Matches: 166, Mismatches: 27, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
184 37 0.22
185 14 0.08
186 17 0.10
187 23 0.14
188 58 0.35
189 17 0.10
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (185 bp):
AAATTTATTTATTTTAAACTATAAAATTGACAAAATATATTAAAGCTATATCATATATAAAAAAT
TAAAAAACCATTCAAAAAGAAAATTTTGAAATTTATTTATTTCAAATCATAAAACTAGATAAAAT
ATACAAATATATTATATCTAAAAAAAAAAAAAACTTCTAAAAAATAGAAAATTTT
Found at i:10183442 original size:31 final size:31
Alignment explanation
Indices: 10183407--10183495 Score: 85
Period size: 30 Copynumber: 2.9 Consensus size: 31
10183397 TTGAAGAGTT
* *
10183407 AATATTATAA-ATGATTTTTAAATTATAATAA
1 AATATTATAACATAATGTTTAAATTATAA-AA
*
10183438 AATATT-TAACATAATGTTTAAATTTTAAAA
1 AATATTATAACATAATGTTTAAATTATAAAA
** * *
10183468 AA-ATTATAATGTAATATATAAATTATAA
1 AATATTATAACATAATGTTTAAATTATAA
10183496 TTTATTAATT
Statistics
Matches: 48, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 3 0.06
30 24 0.50
31 21 0.44
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (31 bp):
AATATTATAACATAATGTTTAAATTATAAAA
Found at i:10189068 original size:23 final size:23
Alignment explanation
Indices: 10189040--10189088 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
10189030 CTTTATGAAG
10189040 TGTCAACCTACTTCAATGTGTTT
1 TGTCAACCTACTTCAATGTGTTT
10189063 TGTCAACCTACTTCAATGTGTTT
1 TGTCAACCTACTTCAATGTGTTT
10189086 TGT
1 TGT
10189089 TCTATCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.14, T:0.45
Consensus pattern (23 bp):
TGTCAACCTACTTCAATGTGTTT
Found at i:10191347 original size:53 final size:53
Alignment explanation
Indices: 10191284--10191391 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
10191274 ACCTTACAAA
10191284 AATACATTAATTGCCCATGGATCCAACTTTCCCCTATTATGACTTCGAACATG
1 AATACATTAATTGCCCATGGATCCAACTTTCCCCTATTATGACTTCGAACATG
10191337 AATACATTAATTGCCCATGGATCCAACTTTCCCCTATTATGACTTCGAACATG
1 AATACATTAATTGCCCATGGATCCAACTTTCCCCTATTATGACTTCGAACATG
10191390 AA
1 AA
10191392 CAAATGACGT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.31
Consensus pattern (53 bp):
AATACATTAATTGCCCATGGATCCAACTTTCCCCTATTATGACTTCGAACATG
Found at i:10195125 original size:23 final size:23
Alignment explanation
Indices: 10195099--10195149 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
10195089 AATAAGACTC
10195099 GGAACCTTTATTGAATAAATCAA
1 GGAACCTTTATTGAATAAATCAA
10195122 GGAACCTTTATTGAATAAATCAA
1 GGAACCTTTATTGAATAAATCAA
10195145 GGAAC
1 GGAAC
10195150 AATTTTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (23 bp):
GGAACCTTTATTGAATAAATCAA
Found at i:10201965 original size:22 final size:22
Alignment explanation
Indices: 10201938--10201980 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10201928 ATTTTCTATT
* *
10201938 CTTAATTCTAGGGATACAAATA
1 CTTAATTATAGAGATACAAATA
10201960 CTTAATTATAGAGATACAAAT
1 CTTAATTATAGAGATACAAAT
10201981 TTAAATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (22 bp):
CTTAATTATAGAGATACAAATA
Found at i:10201989 original size:20 final size:21
Alignment explanation
Indices: 10201950--10201999 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
10201940 TAATTCTAGG
*
10201950 GATACAAATACTTAATTATAGA
1 GATACAAATA-TTAAATATAGA
*
10201972 GATACAAAT-TTAAATATATA
1 GATACAAATATTAAATATAGA
10201992 GATTACAA
1 GA-TACAA
10202000 GATTACAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.44
21 5 0.20
22 9 0.36
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.32
Consensus pattern (21 bp):
GATACAAATATTAAATATAGA
Found at i:10201991 original size:22 final size:21
Alignment explanation
Indices: 10201939--10201999 Score: 61
Period size: 22 Copynumber: 2.9 Consensus size: 21
10201929 TTTTCTATTC
* *
10201939 TTAATTCTAGGGATACAAATA
1 TTAATTATAGAGATACAAATA
10201960 CTTAATTATAGAGATACAAAT-
1 -TTAATTATAGAGATACAAATA
* *
10201981 TTAAATATATAGATTACAA
1 TTAATTATAGAGA-TACAA
10202000 GATTACAATT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
20 11 0.32
21 5 0.15
22 18 0.53
ACGTcount: A:0.48, C:0.08, G:0.10, T:0.34
Consensus pattern (21 bp):
TTAATTATAGAGATACAAATA
Found at i:10208449 original size:20 final size:20
Alignment explanation
Indices: 10208419--10208465 Score: 76
Period size: 20 Copynumber: 2.3 Consensus size: 20
10208409 AAGATATCAT
10208419 ATGGATGTTTATGGAATAACC
1 ATGG-TGTTTATGGAATAACC
*
10208440 ATGGTGTTTATGGAATTACC
1 ATGGTGTTTATGGAATAACC
10208460 ATGGTG
1 ATGGTG
10208466 AAAAACTGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.28, C:0.09, G:0.28, T:0.36
Consensus pattern (20 bp):
ATGGTGTTTATGGAATAACC
Found at i:10212244 original size:16 final size:16
Alignment explanation
Indices: 10212223--10212257 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10212213 ATACAAGCTC
*
10212223 ATACCAATTGTTATAG
1 ATACCAATTGTTAAAG
10212239 ATACCAATTGTTAAAG
1 ATACCAATTGTTAAAG
10212255 ATA
1 ATA
10212258 TGTTATCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (16 bp):
ATACCAATTGTTAAAG
Found at i:10219548 original size:18 final size:17
Alignment explanation
Indices: 10219514--10219549 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
10219504 TAAAAATGGT
*
10219514 AAAAAAAGTAAATAGAA
1 AAAAAAAGTAAAAAGAA
10219531 AAAAAAAGTAAAAAAGAA
1 AAAAAAAGT-AAAAAGAA
10219549 A
1 A
10219550 GAAGGACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.08
Consensus pattern (17 bp):
AAAAAAAGTAAAAAGAA
Found at i:10221132 original size:4 final size:4
Alignment explanation
Indices: 10221123--10221183 Score: 52
Period size: 4 Copynumber: 14.8 Consensus size: 4
10221113 TTTTTTCTTC
* **
10221123 TTAT TTAT TTAT TTAT TTGT TTATT TTATT TTAT TTA- AAAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTA-T TTA-T TTAT TTAT TTAT TTAT TTAT
*
10221172 TAATT TTAT TTA
1 TTA-T TTAT TTA
10221184 AATTAATTTT
Statistics
Matches: 46, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
3 1 0.02
4 33 0.72
5 12 0.26
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (4 bp):
TTAT
Found at i:10221189 original size:29 final size:29
Alignment explanation
Indices: 10221133--10221189 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
10221123 TTATTTATTT
* * * *
10221133 ATTTATTTGTTTATTTTATTTTATTTAAA
1 ATTTATTTATTAATTTTATTTAAATTAAA
10221162 ATTTATTTATTAATTTTATTTAAATTAA
1 ATTTATTTATTAATTTTATTTAAATTAA
10221190 TTTTGTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (29 bp):
ATTTATTTATTAATTTTATTTAAATTAAA
Found at i:10221846 original size:17 final size:17
Alignment explanation
Indices: 10221824--10221856 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10221814 TTTCCAAATT
10221824 TAAGAAA-ACAGAAATAA
1 TAAGAAAGA-AGAAATAA
10221841 TAAGAAAGAAGAAATA
1 TAAGAAAGAAGAAATA
10221857 TGGCTTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.70, C:0.03, G:0.15, T:0.12
Consensus pattern (17 bp):
TAAGAAAGAAGAAATAA
Found at i:10223245 original size:29 final size:29
Alignment explanation
Indices: 10223183--10223255 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 29
10223173 AAAAATGTAC
*
10223183 AAAAATTTAAAAATTTATAAAGACTTTTT
1 AAAAATATAAAAATTTATAAAGACTTTTT
*
10223212 TAAAATAT-AAAATATTATAAA-ACTTTTCT
1 AAAAATATAAAAAT-TTATAAAGACTTTT-T
*
10223241 AAAAACATAAAAATT
1 AAAAATATAAAAATT
10223256 GAAAATTTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
28 11 0.30
29 21 0.57
30 5 0.14
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.37
Consensus pattern (29 bp):
AAAAATATAAAAATTTATAAAGACTTTTT
Found at i:10224826 original size:2 final size:2
Alignment explanation
Indices: 10224819--10224845 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10224809 AAAGTATACC
10224819 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
10224846 GTAATATGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10226942 original size:2 final size:2
Alignment explanation
Indices: 10226935--10226966 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10226925 TAAGCTATGT
10226935 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10226967 CACATGATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10227646 original size:2 final size:2
Alignment explanation
Indices: 10227639--10227670 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
10227629 CTTGAAATCT
*
10227639 TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10227671 AAAGCCAAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:10230324 original size:19 final size:19
Alignment explanation
Indices: 10230300--10230339 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
10230290 ATATAATGAA
10230300 TTATGATCAGAGATTTTCT
1 TTATGATCAGAGATTTTCT
*
10230319 TTATGATCATAGATTTTCT
1 TTATGATCAGAGATTTTCT
10230338 TT
1 TT
10230340 CTTTTTGAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.10, G:0.12, T:0.53
Consensus pattern (19 bp):
TTATGATCAGAGATTTTCT
Found at i:10231042 original size:2 final size:2
Alignment explanation
Indices: 10231037--10231066 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
10231027 TGTGTATAGT
10231037 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10231067 AATAATGCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10237332 original size:27 final size:27
Alignment explanation
Indices: 10237302--10237357 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
10237292 CTTATTAAAG
*
10237302 TTTATCACAAATATGATAAATTTTAGA
1 TTTATCACAAATATGATAAATCTTAGA
** *
10237329 TTTATCACATGTATGTTAAATCTTAGA
1 TTTATCACAAATATGATAAATCTTAGA
10237356 TT
1 TT
10237358 GTCTGTTGTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.45
Consensus pattern (27 bp):
TTTATCACAAATATGATAAATCTTAGA
Found at i:10239517 original size:21 final size:20
Alignment explanation
Indices: 10239491--10239533 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
10239481 GCCTTTTTTT
10239491 TTTAAATTAAAGTTATTAAAA
1 TTTAAATTAAA-TTATTAAAA
* *
10239512 TTTAAATTTAATTATTGAAA
1 TTTAAATTAAATTATTAAAA
10239532 TT
1 TT
10239534 AAAAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TTTAAATTAAATTATTAAAA
Found at i:10244221 original size:13 final size:13
Alignment explanation
Indices: 10244205--10244231 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10244195 AATAAATATA
10244205 AACACTAATTAAT
1 AACACTAATTAAT
10244218 AACACTAATTAAT
1 AACACTAATTAAT
10244231 A
1 A
10244232 GTACCTACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (13 bp):
AACACTAATTAAT
Found at i:10247190 original size:34 final size:33
Alignment explanation
Indices: 10247152--10247227 Score: 100
Period size: 33 Copynumber: 2.3 Consensus size: 33
10247142 CTCGAAGACG
10247152 TATTTTCGAGAATTACATTGCATTCCC-ATAAATT
1 TATTTTCGAG-ATTACATTGCATTCCCGA-AAATT
* *
10247186 TATTTCCGAGATTACATTGTATTCCCGAAAATT
1 TATTTTCGAGATTACATTGCATTCCCGAAAATT
*
10247219 CATTTTCGA
1 TATTTTCGA
10247228 AAATGCATCA
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
33 27 0.73
34 10 0.27
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (33 bp):
TATTTTCGAGATTACATTGCATTCCCGAAAATT
Found at i:10248996 original size:3 final size:3
Alignment explanation
Indices: 10248990--10249051 Score: 103
Period size: 3 Copynumber: 21.7 Consensus size: 3
10248980 ACATATATTT
10248990 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
10249037 TAA T-A TAA T-A TAA TA
1 TAA TAA TAA TAA TAA TA
10249052 TAAAATGAGT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 6 0.11
3 50 0.89
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:10250280 original size:33 final size:34
Alignment explanation
Indices: 10250226--10250290 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 34
10250216 AAAAATCTTA
* *
10250226 TTATAATGGGATAAGGTCCATTTATTTTATTATT
1 TTATAATGGGATAAGGCCCATTTACTTTATTATT
*
10250260 TTATAAT-GGATAAGGCCCATTTCCTTTATTA
1 TTATAATGGGATAAGGCCCATTTACTTTATTA
10250291 ATAATAATAG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.46
Consensus pattern (34 bp):
TTATAATGGGATAAGGCCCATTTACTTTATTATT
Found at i:10251996 original size:19 final size:18
Alignment explanation
Indices: 10251974--10252015 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
10251964 GAATAAACAA
10251974 AAAAAAATT-AAAAGCATAG
1 AAAAAAATTCAAAAG-A-AG
*
10251993 AAAAAAGTTCAAAAGAAG
1 AAAAAAATTCAAAAGAAG
10252011 AAAAA
1 AAAAA
10252016 TGCAATTTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 7 0.33
19 9 0.43
20 5 0.24
ACGTcount: A:0.71, C:0.05, G:0.12, T:0.12
Consensus pattern (18 bp):
AAAAAAATTCAAAAGAAG
Found at i:10256297 original size:13 final size:13
Alignment explanation
Indices: 10256279--10256329 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
10256269 TATTTTATTT
*
10256279 TATTTTATTTTTG
1 TATTTTATTTTTA
*
10256292 TATTTTATATTTA
1 TATTTTATTTTTA
10256305 TATTTATATTTTTA
1 TATTT-TATTTTTA
*
10256319 TTTATTTATTT
1 TAT-TTTATTT
10256330 ATTTTTGTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
13 16 0.50
14 14 0.44
15 2 0.06
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.75
Consensus pattern (13 bp):
TATTTTATTTTTA
Found at i:10256304 original size:6 final size:6
Alignment explanation
Indices: 10256272--10256323 Score: 54
Period size: 6 Copynumber: 8.8 Consensus size: 6
10256262 GTAGGCCTAT
* * *
10256272 TTTAT- TTTAT- TTTATT TTTGTA TTTTATA TTTATA TTTATA TTTTTA
1 TTTATA TTTATA TTTATA TTTATA -TTTATA TTTATA TTTATA TTTATA
10256319 TTTAT
1 TTTAT
10256324 TTATTTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
5 10 0.25
6 25 0.62
7 5 0.12
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (6 bp):
TTTATA
Found at i:10256324 original size:4 final size:4
Alignment explanation
Indices: 10256272--10256452 Score: 64
Period size: 4 Copynumber: 45.5 Consensus size: 4
10256262 GTAGGCCTAT
*
10256272 TTTA TTTTA TTTTA TTT- TTGTA TTT- TATA TTTA --TA TTTA TATT-
1 TTTA -TTTA -TTTA TTTA TT-TA TTTA TTTA TTTA TTTA TTTA T-TTA
* *
10256315 TTTA TTTA TTTA TTTA TTT- TTGT- TGTA TCTTA TGTA TTTA -TTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TT-TA TTTA T-TTA TTTA TTTA TTTA TTTA
* *
10256362 TTTG TTTA -TTA TTACTA TTTA TTAATA TATA TTT- TTTA -TTA TTTA
1 TTTA TTTA TTTA TT--TA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA
* * * * * *
10256407 TCTG TTAATA TATA TGTA TTTA -TTA -TTA TTTA TCTA TTTA TATA TT
1 TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
10256453 ATTATTTGTC
Statistics
Matches: 134, Mismatches: 21, Indels: 43
0.68 0.11 0.22
Matches are distributed among these distances:
2 2 0.01
3 27 0.20
4 80 0.60
5 16 0.12
6 9 0.07
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:10256335 original size:18 final size:18
Alignment explanation
Indices: 10256272--10256447 Score: 92
Period size: 18 Copynumber: 9.3 Consensus size: 18
10256262 GTAGGCCTAT
10256272 TTTA-TTTTATTTTATTT-
1 TTTATTTTTA-TTTATTTA
10256289 TTGTATTTTATATTTATATT-
1 TT-TATTTT-TATTTAT-TTA
*
10256309 TATATTTTTATTTATTTA
1 TTTATTTTTATTTATTTA
*
10256327 TTTATTTTTGTTGTATCTTA
1 TTTATTTTTATT-TAT-TTA
* *
10256347 TGTATTTATTATTTATTTG
1 TTTATTT-TTATTTATTTA
*
10256366 TTTATTATTACTATTTATTAA
1 TTTATT-TT--TATTTATTTA
* *
10256387 TATATATTT-TTTA-TTA
1 TTTATTTTTATTTATTTA
* *
10256403 TTTATCTGTTAATATATATGTA
1 TTTAT-T-TT--TATTTATTTA
* *
10256425 TTTATTATTATTTATCTA
1 TTTATTTTTATTTATTTA
10256443 TTTAT
1 TTTAT
10256448 ATATTATTAT
Statistics
Matches: 123, Mismatches: 19, Indels: 33
0.70 0.11 0.19
Matches are distributed among these distances:
16 6 0.05
17 8 0.07
18 35 0.28
19 25 0.20
20 22 0.18
21 20 0.16
22 7 0.06
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (18 bp):
TTTATTTTTATTTATTTA
Found at i:10256433 original size:32 final size:31
Alignment explanation
Indices: 10256366--10256459 Score: 106
Period size: 32 Copynumber: 3.1 Consensus size: 31
10256356 TATTTATTTG
* *
10256366 TTTATTATTA-CTATTTATTAATATATA-T-
1 TTTATTATTATTTATCTATTAATATATATTA
*
10256394 TTT-TTATTATTTATCTGTTAATATATATGTA
1 TTTATTATTATTTATCTATTAATATATAT-TA
*
10256425 TTTATTATTATTTATCTATTTATATATTATTA
1 TTTATTATTATTTATCTATTAATATA-TATTA
10256457 TTT
1 TTT
10256460 GTCTAATTAT
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
27 6 0.11
28 17 0.31
30 1 0.02
31 3 0.05
32 25 0.45
33 3 0.05
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.64
Consensus pattern (31 bp):
TTTATTATTATTTATCTATTAATATATATTA
Found at i:10256452 original size:22 final size:22
Alignment explanation
Indices: 10256427--10256469 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
10256417 TATATGTATT
*
10256427 TATTATTATTTATCTATTTATA
1 TATTATTATTTATCTAATTATA
*
10256449 TATTATTATTTGTCTAATTAT
1 TATTATTATTTATCTAATTAT
10256470 TTTCTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (22 bp):
TATTATTATTTATCTAATTATA
Found at i:10256457 original size:28 final size:27
Alignment explanation
Indices: 10256344--10256458 Score: 92
Period size: 28 Copynumber: 4.1 Consensus size: 27
10256334 TTGTTGTATC
* *
10256344 TTATGTATTTATTATTTATTTGTTTATTA
1 TTAT-TATTTATTATTTATAT-ATTATTA
* *
10256373 TTACTATTTATTA-ATATATATT-TT-
1 TTATTATTTATTATTTATATATTATTA
*
10256397 TTATTATTTATCTGTTAATATATATGTATTTA
1 TTATTATTTAT-TATT--TATATAT-TA-TTA
10256429 TTATTATTTATCTATTTATATATTATTA
1 TTATTATTTAT-TATTTATATATTATTA
10256457 TT
1 TT
10256459 TGTCTAATTA
Statistics
Matches: 70, Mismatches: 8, Indels: 17
0.74 0.08 0.18
Matches are distributed among these distances:
24 10 0.14
25 3 0.04
26 2 0.03
27 4 0.06
28 21 0.30
29 6 0.09
30 7 0.10
31 2 0.03
32 15 0.21
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (27 bp):
TTATTATTTATTATTTATATATTATTA
Done.