Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 52 of 133
Found at i:10869561 original size:22 final size:21
Alignment explanation
Indices: 10869527--10869568 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
10869517 CTTATAGCAA
* *
10869527 TTGATATAGGAGCTTAAACAT
1 TTGATATAAGAGCATAAACAT
10869548 TTGATATAAAGAGCATAAACA
1 TTGATAT-AAGAGCATAAACA
10869569 AAAGGGAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (21 bp):
TTGATATAAGAGCATAAACAT
Found at i:10870671 original size:22 final size:22
Alignment explanation
Indices: 10870646--10870691 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
10870636 TCAAGAAGGG
10870646 ATCGATTGATTTTTCTTACAGA
1 ATCGATTGATTTTTCTTACAGA
10870668 ATCGATTGATTTTTCTTACAGA
1 ATCGATTGATTTTTCTTACAGA
10870690 AT
1 AT
10870692 GCAAGTTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (22 bp):
ATCGATTGATTTTTCTTACAGA
Found at i:10872696 original size:86 final size:86
Alignment explanation
Indices: 10872595--10872766 Score: 299
Period size: 86 Copynumber: 2.0 Consensus size: 86
10872585 AAAGAATAAT
* **
10872595 ACACACAAGGGAAAAGGTAGTAGCTTTGATCGAAAAAGCCACCATTAGCTGTCAAGTAATCAAGT
1 ACACACAAGGGAAAAGGTAGTAGCTTTGATAGAAAAAGCCACCACAAGCTGTCAAGTAATCAAGT
*
10872660 CCCCGTTAACATTGTGGTAGC
66 CCCCATTAACATTGTGGTAGC
10872681 ACACACAAGGGAAAAGGTAGTAGCTTTGATAGAAAAAGCCACCACAAGCTGTCAAGTAATCAAGT
1 ACACACAAGGGAAAAGGTAGTAGCTTTGATAGAAAAAGCCACCACAAGCTGTCAAGTAATCAAGT
*
10872746 CCCTATTAACATTGTGGTAGC
66 CCCCATTAACATTGTGGTAGC
10872767 GAGACAGCTA
Statistics
Matches: 81, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 81 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.22
Consensus pattern (86 bp):
ACACACAAGGGAAAAGGTAGTAGCTTTGATAGAAAAAGCCACCACAAGCTGTCAAGTAATCAAGT
CCCCATTAACATTGTGGTAGC
Found at i:10873601 original size:13 final size:12
Alignment explanation
Indices: 10873583--10873616 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
10873573 TCATTTTCAT
10873583 TTATTTATTTACC
1 TTATTTATTTA-C
10873596 TTATTTATTTAC
1 TTATTTATTTAC
*
10873608 TTACTTATT
1 TTATTTATT
10873617 CTGAAATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.24, C:0.12, G:0.00, T:0.65
Consensus pattern (12 bp):
TTATTTATTTAC
Found at i:10873601 original size:17 final size:16
Alignment explanation
Indices: 10873581--10873616 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
10873571 TTTCATTTTC
*
10873581 ATTTATTTATTTACCTT
1 ATTTATTTACTTA-CTT
10873598 ATTTATTTACTTACTT
1 ATTTATTTACTTACTT
10873614 ATT
1 ATT
10873617 CTGAAATGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (16 bp):
ATTTATTTACTTACTT
Found at i:10874197 original size:14 final size:15
Alignment explanation
Indices: 10874178--10874211 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
10874168 CTAAATGGTG
10874178 AAAAATT-TAGAAAT
1 AAAAATTGTAGAAAT
*
10874192 AAAAATTGTATAAAT
1 AAAAATTGTAGAAAT
10874207 AAAAA
1 AAAAA
10874212 ATAAATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (15 bp):
AAAAATTGTAGAAAT
Found at i:10879693 original size:18 final size:17
Alignment explanation
Indices: 10879672--10879732 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
10879662 ACAAATGTAT
10879672 AAATATATAATATCATG
1 AAATATATAATATCATG
*
10879689 CAAATATAT--TACCATG
1 -AAATATATAATATCATG
10879705 AAATAATATAAAATATCATG
1 AAAT-ATAT--AATATCATG
10879725 AAA-ATATA
1 AAATATATA
10879733 TTAACAATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
15 4 0.11
16 11 0.31
18 12 0.33
20 9 0.25
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (17 bp):
AAATATATAATATCATG
Found at i:10879733 original size:20 final size:22
Alignment explanation
Indices: 10879701--10879759 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 22
10879691 AATATATTAC
10879701 CATGAAATAATATAA-AAT-A-T
1 CATGAAAT-ATATAACAATCATT
10879721 CATGAAAATATATTAACAATCATT
1 CATG-AAATATA-TAACAATCATT
10879745 CATGCAAATATATAA
1 CATG-AAATATATAA
10879760 TCATGAAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
20 7 0.21
21 7 0.21
22 3 0.09
23 4 0.12
24 12 0.36
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (22 bp):
CATGAAATATATAACAATCATT
Found at i:10880044 original size:21 final size:20
Alignment explanation
Indices: 10879996--10880120 Score: 95
Period size: 20 Copynumber: 6.4 Consensus size: 20
10879986 AAAAAAATTA
*
10879996 ATAATCTTGCAATTAAATAT
1 ATAATCATGCAATTAAATAT
10880016 ATAATCATGCAATTAACA-AT
1 ATAATCATGCAATTAA-ATAT
*
10880036 ATAAATCATGCAAAT-AA-A-
1 AT-AATCATGCAATTAAATAT
*
10880054 A-AAT-A--CAATTAAAAAT
1 ATAATCATGCAATTAAATAT
*
10880070 ATAATCATGCAAATAAAAATAT
1 ATAATCATGC-AAT-TAAATAT
* *
10880092 ATAAACCATGCAAATAAATAT
1 AT-AATCATGCAATTAAATAT
10880113 ATAATCAT
1 ATAATCAT
10880121 ACAAATAGTA
Statistics
Matches: 84, Mismatches: 9, Indels: 24
0.72 0.08 0.21
Matches are distributed among these distances:
13 4 0.05
14 2 0.02
15 2 0.02
16 4 0.05
17 3 0.04
18 2 0.02
19 2 0.02
20 26 0.31
21 23 0.27
22 9 0.11
23 7 0.08
ACGTcount: A:0.56, C:0.11, G:0.04, T:0.29
Consensus pattern (20 bp):
ATAATCATGCAATTAAATAT
Found at i:10880058 original size:22 final size:22
Alignment explanation
Indices: 10880010--10880058 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
10880000 TCTTGCAATT
*
10880010 AAATATATAATCATGCAATTAA
1 AAATATATAATCATGCAATAAA
*
10880032 CAATATA-AATCATGCAAATAAA
1 AAATATATAATCATGC-AATAAA
10880054 AAATA
1 AAATA
10880059 CAATTAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.59, C:0.10, G:0.04, T:0.27
Consensus pattern (22 bp):
AAATATATAATCATGCAATAAA
Found at i:10880072 original size:54 final size:56
Alignment explanation
Indices: 10880005--10880109 Score: 160
Period size: 54 Copynumber: 1.9 Consensus size: 56
10879995 AATAATCTTG
* * * *
10880005 CAATTAAATATATAATCATGC-AATTAACA-ATATAAATCATGCAAATAAAAAATA
1 CAATTAAAAATATAATCATGCAAATAAAAATATATAAACCATGCAAATAAAAAATA
10880059 CAATTAAAAATATAATCATGCAAATAAAAATATATAAACCATGCAAATAAA
1 CAATTAAAAATATAATCATGCAAATAAAAATATATAAACCATGCAAATAAA
10880110 TATATAATCA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
54 20 0.44
55 6 0.13
56 19 0.42
ACGTcount: A:0.59, C:0.11, G:0.04, T:0.26
Consensus pattern (56 bp):
CAATTAAAAATATAATCATGCAAATAAAAATATATAAACCATGCAAATAAAAAATA
Found at i:10880081 original size:33 final size:34
Alignment explanation
Indices: 10880025--10880088 Score: 112
Period size: 33 Copynumber: 1.9 Consensus size: 34
10880015 TATAATCATG
*
10880025 CAATTAACAATATAAATCATGCAAATAAAAAATA
1 CAATTAAAAATATAAATCATGCAAATAAAAAATA
10880059 CAATTAAAAATAT-AATCATGCAAATAAAAA
1 CAATTAAAAATATAAATCATGCAAATAAAAA
10880089 TATATAAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 17 0.59
34 12 0.41
ACGTcount: A:0.62, C:0.11, G:0.03, T:0.23
Consensus pattern (34 bp):
CAATTAAAAATATAAATCATGCAAATAAAAAATA
Found at i:10880096 original size:43 final size:43
Alignment explanation
Indices: 10880049--10880139 Score: 110
Period size: 43 Copynumber: 2.1 Consensus size: 43
10880039 AATCATGCAA
* *
10880049 ATAAAAAATACAATTAAAAATATAATCATGCAAATAAAAATAT
1 ATAAAAAATACAAATAAAAATATAATCATACAAATAAAAATAT
** * * **
10880092 ATAAACCATGCAAATAAATATATAATCATACAAATAGTAATAT
1 ATAAAAAATACAAATAAAAATATAATCATACAAATAAAAATAT
10880135 ATAAA
1 ATAAA
10880140 CCATGCAAAC
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (43 bp):
ATAAAAAATACAAATAAAAATATAATCATACAAATAAAAATAT
Found at i:10880105 original size:23 final size:22
Alignment explanation
Indices: 10880063--10880148 Score: 90
Period size: 23 Copynumber: 4.0 Consensus size: 22
10880053 AAAATACAAT
*
10880063 TAAAA-ATAT-AATCATGCAAA
1 TAAAATATATAAACCATGCAAA
10880083 TAAAAATATATAAACCATGCAAA
1 T-AAAATATATAAACCATGCAAA
* *
10880106 T-AAATATAT-AATCATACAAA
1 TAAAATATATAAACCATGCAAA
*
10880126 TAGTAATATATAAACCATGCAAA
1 TA-AAATATATAAACCATGCAAA
10880149 CAAACATGCA
Statistics
Matches: 54, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
20 11 0.20
21 12 0.22
22 11 0.20
23 20 0.37
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.26
Consensus pattern (22 bp):
TAAAATATATAAACCATGCAAA
Found at i:10880127 original size:20 final size:20
Alignment explanation
Indices: 10880056--10880138 Score: 76
Period size: 20 Copynumber: 3.9 Consensus size: 20
10880046 CAAATAAAAA
* *
10880056 ATACAATTAAAAATATAATC
1 ATACAAATAAATATATAATC
* *
10880076 ATGCAAATAAAAATATATAAACC
1 ATACAAAT--AAATATAT-AATC
*
10880099 ATGCAAATAAATATATAATC
1 ATACAAATAAATATATAATC
10880119 ATACAAATAGTAATATATAA
1 ATACAAATA--AATATATAA
10880139 ACCATGCAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
20 17 0.33
21 8 0.15
22 16 0.31
23 11 0.21
ACGTcount: A:0.59, C:0.10, G:0.04, T:0.28
Consensus pattern (20 bp):
ATACAAATAAATATATAATC
Found at i:10880140 original size:43 final size:43
Alignment explanation
Indices: 10880063--10880148 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
10880053 AAAATACAAT
*
10880063 TAAAAATATAATCATGCAAATAAAAATATATAAACCATGCAAA
1 TAAAAATATAATCATACAAATAAAAATATATAAACCATGCAAA
* **
10880106 TAAATATATAATCATACAAATAGTAATATATAAACCATGCAAA
1 TAAAAATATAATCATACAAATAAAAATATATAAACCATGCAAA
10880149 CAAACATGCA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.58, C:0.12, G:0.05, T:0.26
Consensus pattern (43 bp):
TAAAAATATAATCATACAAATAAAAATATATAAACCATGCAAA
Found at i:10880165 original size:55 final size:55
Alignment explanation
Indices: 10880098--10880257 Score: 239
Period size: 55 Copynumber: 2.9 Consensus size: 55
10880088 ATATATAAAC
* *
10880098 CATGCAAATAAATATATAATCATACAAATAGTAATATATAAACCATGCAAACAAA
1 CATGCAATTAAATATATAATCATACAAATAGTAATATATAAATCATGCAAACAAA
** * * *
10880153 CATGCAATTAAATATATAATCATGTAAATAGTAATATATAAATCTTGCACATAAA
1 CATGCAATTAAATATATAATCATACAAATAGTAATATATAAATCATGCAAACAAA
* *
10880208 CATGCAATTAAATATATAATCATACAAATAATAATACATAAATCATGCAA
1 CATGCAATTAAATATATAATCATACAAATAGTAATATATAAATCATGCAA
10880258 TCGTGCAAAT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.53, C:0.13, G:0.06, T:0.28
Consensus pattern (55 bp):
CATGCAATTAAATATATAATCATACAAATAGTAATATATAAATCATGCAAACAAA
Found at i:10880341 original size:20 final size:20
Alignment explanation
Indices: 10880318--10880364 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
10880308 AATCACACAA
10880318 ATAAATATACA-ATTAAATAT
1 ATAAATATACATA-TAAATAT
* *
10880338 ATAATTATGCATATAAATAT
1 ATAAATATACATATAAATAT
*
10880358 ATTAATA
1 ATAAATA
10880365 GTTAAGCAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (20 bp):
ATAAATATACATATAAATAT
Found at i:10880409 original size:21 final size:21
Alignment explanation
Indices: 10880385--10880427 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
10880375 TATATTAATA
*
10880385 AATCACACAAATAAATATATT
1 AATCACACAAACAAATATATT
**
10880406 AATCATGCAAACAAATATATT
1 AATCACACAAACAAATATATT
10880427 A
1 A
10880428 GGCAAATAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.14, G:0.02, T:0.28
Consensus pattern (21 bp):
AATCACACAAACAAATATATT
Found at i:10880419 original size:25 final size:25
Alignment explanation
Indices: 10880372--10880422 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
10880362 ATAGTTAAGC
*
10880372 AAATATATTAATAAATCACACAAAT
1 AAATATATTAATAAATCAAACAAAT
*
10880397 AAATATATTAAT-CATGCAAACAAAT
1 AAATATATTAATAAAT-CAAACAAAT
10880422 A
1 A
10880423 TATTAGGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.59, C:0.12, G:0.02, T:0.27
Consensus pattern (25 bp):
AAATATATTAATAAATCAAACAAAT
Found at i:10880466 original size:20 final size:18
Alignment explanation
Indices: 10880433--10880470 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
10880423 TATTAGGCAA
10880433 ATAAATTATCATGCAAAT
1 ATAAATTATCATGCAAAT
10880451 ATAATATTAGTCATGCAAAT
1 ATAA-ATTA-TCATGCAAAT
10880471 TTATGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (18 bp):
ATAAATTATCATGCAAAT
Found at i:10881126 original size:20 final size:20
Alignment explanation
Indices: 10881083--10881127 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
10881073 CTCTTTTGAC
*
10881083 TAAAAAAACAAAAATTAAAC
1 TAAAAAAACAAAAATTAAAA
*
10881103 TAAAAAAACTAAAA-TACAAA
1 TAAAAAAACAAAAATTA-AAA
10881123 TAAAA
1 TAAAA
10881128 TTTAGGGCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.76, C:0.09, G:0.00, T:0.16
Consensus pattern (20 bp):
TAAAAAAACAAAAATTAAAA
Found at i:10881836 original size:18 final size:20
Alignment explanation
Indices: 10881809--10881902 Score: 64
Period size: 18 Copynumber: 5.2 Consensus size: 20
10881799 TCAATATTTG
*
10881809 CAAAGTTTCCAAAG-TTCAT
1 CAAAGGTTCCAAAGATTCAT
10881828 -AAAGGTTCC-AAGATTCAT
1 CAAAGGTTCCAAAGATTCAT
**
10881846 CAAA-GTTCCAAA-ATTTGT
1 CAAAGGTTCCAAAGATTCAT
*
10881864 -AAAGG-TCCCAAGATTCAT
1 CAAAGGTTCCAAAGATTCAT
* *
10881882 GAAA-GTCCCAAA-ATTCA-
1 CAAAGGTTCCAAAGATTCAT
10881899 CAAA
1 CAAA
10881903 AGTCCTAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 16
0.70 0.11 0.19
Matches are distributed among these distances:
17 14 0.24
18 33 0.56
19 12 0.20
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (20 bp):
CAAAGGTTCCAAAGATTCAT
Found at i:10881857 original size:36 final size:36
Alignment explanation
Indices: 10881809--10881907 Score: 117
Period size: 36 Copynumber: 2.7 Consensus size: 36
10881799 TCAATATTTG
* *
10881809 CAAAGTTTCCAAAGTTCATAAAGGTTCCAAGATTCAT
1 CAAAG-TTCCAAAATTCATAAAGGTCCCAAGATTCAT
**
10881846 CAAAGTTCCAAAATTTGTAAAGGTCCCAAGATTCAT
1 CAAAGTTCCAAAATTCATAAAGGTCCCAAGATTCAT
* * * *
10881882 GAAAGTCCCAAAATTCACAAAAGTCC
1 CAAAGTTCCAAAATTCATAAAGGTCC
10881908 TAAATTATTT
Statistics
Matches: 52, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
36 47 0.90
37 5 0.10
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.25
Consensus pattern (36 bp):
CAAAGTTCCAAAATTCATAAAGGTCCCAAGATTCAT
Found at i:10881904 original size:18 final size:18
Alignment explanation
Indices: 10881868--10881907 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
10881858 ATTTGTAAAG
* **
10881868 GTCCCAAGATTCATGAAA
1 GTCCCAAAATTCACAAAA
10881886 GTCCCAAAATTCACAAAA
1 GTCCCAAAATTCACAAAA
10881904 GTCC
1 GTCC
10881908 TAAATTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.40, C:0.28, G:0.12, T:0.20
Consensus pattern (18 bp):
GTCCCAAAATTCACAAAA
Found at i:10882065 original size:72 final size:73
Alignment explanation
Indices: 10881963--10882104 Score: 189
Period size: 72 Copynumber: 2.0 Consensus size: 73
10881953 TTTACAAGAT
* ** * * *
10881963 TCACATCCAAAGATTCACATTTGAAAATCTTAGA-AGTTCACCTTTAAGATTCACATTAAAAAAT
1 TCACATCCAAAGAATCACATTAAAAAATCTTAGAGA-TTAACATTCAAGATTCACATTAAAAAAT
10882027 CTTAGAAGC
65 CTTAGAAGC
* *
10882036 TCACATTC-AAGAATCACATTAAAAAATCTTAGAGATTAATATTCAAGATTCACATTAAAAAATC
1 TCACATCCAAAGAATCACATTAAAAAATCTTAGAGATTAACATTCAAGATTCACATTAAAAAATC
10882100 TTAGA
66 TTAGA
10882105 GATTTGCATC
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
72 52 0.87
73 8 0.13
ACGTcount: A:0.44, C:0.17, G:0.08, T:0.30
Consensus pattern (73 bp):
TCACATCCAAAGAATCACATTAAAAAATCTTAGAGATTAACATTCAAGATTCACATTAAAAAATC
TTAGAAGC
Found at i:10882080 original size:36 final size:36
Alignment explanation
Indices: 10881972--10882108 Score: 161
Period size: 36 Copynumber: 3.8 Consensus size: 36
10881962 TTCACATCCA
** * * *
10881972 AAGATTCACATTTGAAAATCTTAGA-AGTTCACCTTT
1 AAGATTCACATTAAAAAATCTTAGAGA-TTAACATTC
* *
10882008 AAGATTCACATTAAAAAATCTTAGA-AGCTCACATTC
1 AAGATTCACATTAAAAAATCTTAGAGA-TTAACATTC
* *
10882044 AAGAATCACATTAAAAAATCTTAGAGATTAATATTC
1 AAGATTCACATTAAAAAATCTTAGAGATTAACATTC
10882080 AAGATTCACATTAAAAAATCTTAGAGATT
1 AAGATTCACATTAAAAAATCTTAGAGATT
10882109 TGCATCCAAT
Statistics
Matches: 90, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
36 89 0.99
37 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (36 bp):
AAGATTCACATTAAAAAATCTTAGAGATTAACATTC
Found at i:10883402 original size:11 final size:11
Alignment explanation
Indices: 10883382--10883411 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
10883372 CTTTATTCAA
10883382 TCTTTCTTTTTT
1 TCTTT-TTTTTT
10883394 TCTTTTTTTTT
1 TCTTTTTTTTT
10883405 TCTTTTT
1 TCTTTTT
10883412 GACCATGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (11 bp):
TCTTTTTTTTT
Found at i:10884588 original size:131 final size:134
Alignment explanation
Indices: 10884418--10884728 Score: 371
Period size: 139 Copynumber: 2.3 Consensus size: 134
10884408 TAACAATAAG
* * * * * *
10884418 AATTTATATTCACAACTATGTACAAAACTGAAAATGCAAATATTCTCCCAAGCCAATAAAATAAT
1 AATTTATATCCAAAACTATGTACAAAATTGAAAAGGCAAATATT-TCCCAAACAAATAAAATAAT
* * *
10884483 GTACA-T-ACAAA-A-ATGGATAAAAATTTATATGCAAATACATGTATGCAATACATAGTGAAAA
65 GTACATTAAAAAATACATGGATAAAAATGTATATGCAAATACATGTAGGCAATACATAGTGAAAA
10884544 A-AAA
130 ACAAA
* * *
10884548 AATTTCATATCCAAAACTATGTACAAAATTGAAAAGGCAAAGAATTTTCCAAACAAATGAAATAA
1 AATTT-ATATCCAAAACTATGTACAAAATTGAAAAGGCAAA-TATTTCCCAAACAAATAAAATAA
*
10884613 TGTACATTAAAAAATGTTTACATGGATAAAAATGTATATGCAAATACATGTAGGCAATACGTAGT
64 TGTACATTAAAAAA----TACATGGATAAAAATGTATATGCAAATACATGTAGGCAATACATAGT
* *
10884678 GAAAAACGAG
125 GAAAAACAAA
* *
10884688 AATTTATATCCATAACTATGTATAAAATTGAAAAGGCAAAT
1 AATTTATATCCAAAACTATGTACAAAATTGAAAAGGCAAAT
10884729 GAAATAATGC
Statistics
Matches: 152, Mismatches: 18, Indels: 14
0.83 0.10 0.08
Matches are distributed among these distances:
130 5 0.03
131 52 0.34
132 4 0.03
133 4 0.03
138 1 0.01
139 80 0.53
140 6 0.04
ACGTcount: A:0.50, C:0.12, G:0.12, T:0.27
Consensus pattern (134 bp):
AATTTATATCCAAAACTATGTACAAAATTGAAAAGGCAAATATTTCCCAAACAAATAAAATAATG
TACATTAAAAAATACATGGATAAAAATGTATATGCAAATACATGTAGGCAATACATAGTGAAAAA
CAAA
Found at i:10884918 original size:16 final size:16
Alignment explanation
Indices: 10884889--10884936 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
10884879 TAATGCATGA
* *
10884889 ATGAATGTAGGTATGC
1 ATGAATGCATGTATGC
*
10884905 ATGAATGCATGTATGG
1 ATGAATGCATGTATGC
10884921 ATGTAAATGCATGTAT
1 ATG--AATGCATGTAT
10884937 ATACAATAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
16 16 0.59
18 11 0.41
ACGTcount: A:0.33, C:0.06, G:0.27, T:0.33
Consensus pattern (16 bp):
ATGAATGCATGTATGC
Found at i:10886341 original size:24 final size:24
Alignment explanation
Indices: 10886307--10886368 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
10886297 AATATCATTC
10886307 AAATATAATATTA-ATCATACAAT
1 AAATATAATATTATATCATACAAT
*
10886330 AACATATAATATTATATCATGCAAT
1 AA-ATATAATATTATATCATACAAT
*
10886355 AAATATAAAATTAT
1 AAATATAATATTAT
10886369 GCAATAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
23 2 0.06
24 22 0.63
25 11 0.31
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATATAATATTATATCATACAAT
Found at i:10886515 original size:20 final size:20
Alignment explanation
Indices: 10886492--10886555 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 20
10886482 TAAATTATGC
10886492 AAATAAACATGCAATTAAAT
1 AAATAAACATGCAATTAAAT
* * *
10886512 AAATAATCAAGCAAATAAAAAT
1 AAATAAACATGC-AAT-TAAAT
* *
10886534 ATATAAACCATGCAAATAAAT
1 AAATAAA-CATGCAATTAAAT
10886555 A
1 A
10886556 TGCTATTAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
20 10 0.30
21 8 0.24
22 11 0.33
23 4 0.12
ACGTcount: A:0.62, C:0.11, G:0.05, T:0.22
Consensus pattern (20 bp):
AAATAAACATGCAATTAAAT
Found at i:10886539 original size:22 final size:23
Alignment explanation
Indices: 10886508--10886553 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
10886498 ACATGCAATT
*
10886508 AAATAAAT-AATCAAGCAAATAA
1 AAATAAATAAACCAAGCAAATAA
* *
10886530 AAATATATAAACCATGCAAATAA
1 AAATAAATAAACCAAGCAAATAA
10886553 A
1 A
10886554 TATGCTATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.65, C:0.11, G:0.04, T:0.20
Consensus pattern (23 bp):
AAATAAATAAACCAAGCAAATAA
Found at i:10886564 original size:55 final size:55
Alignment explanation
Indices: 10886452--10886663 Score: 241
Period size: 55 Copynumber: 3.9 Consensus size: 55
10886442 TAATCATGAA
* * * * ** *
10886452 ATTAAATATATAATAATGCAATTAA-CA-ATGTAAATTATGCAAATAAACATGCA
1 ATTAAATATATAATCATGCAAATAATAATATATAAACCATGCAAATAAACATGCT
* * * *
10886505 ATTAAATAAATAATCAAGCAAATAAAAATATATAAACCATGCAAATAAATATGCT
1 ATTAAATATATAATCATGCAAATAATAATATATAAACCATGCAAATAAACATGCT
* *
10886560 ATTAAATATATAATCATGCGAATAGTAATATATAAACCATGCAAATAAACATG-T
1 ATTAAATATATAATCATGCAAATAATAATATATAAACCATGCAAATAAACATGCT
* * * *
10886614 AATGAAATATATAATCATGTAAATAATAATATATAAATCATGCAATTAAA
1 -ATTAAATATATAATCATGCAAATAATAATATATAAACCATGCAAATAAA
10886664 TATATAATCA
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
53 21 0.16
54 2 0.01
55 111 0.83
ACGTcount: A:0.54, C:0.09, G:0.07, T:0.29
Consensus pattern (55 bp):
ATTAAATATATAATCATGCAAATAATAATATATAAACCATGCAAATAAACATGCT
Found at i:10886606 original size:23 final size:22
Alignment explanation
Indices: 10886564--10886606 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
10886554 TATGCTATTA
* *
10886564 AATATATAATCATGCGAATAGT
1 AATATATAACCATGCAAATAGT
10886586 AATATATAAACCATGCAAATA
1 AATATAT-AACCATGCAAATA
10886607 AACATGTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.51, C:0.12, G:0.09, T:0.28
Consensus pattern (22 bp):
AATATATAACCATGCAAATAGT
Found at i:10886632 original size:20 final size:20
Alignment explanation
Indices: 10886604--10886673 Score: 77
Period size: 20 Copynumber: 3.4 Consensus size: 20
10886594 AACCATGCAA
* *
10886604 ATAAACATGTAATGAAATAT
1 ATAATCATGTAATAAAATAT
10886624 ATAATCATGTAAATAATAATAT
1 ATAATCATGT-AATAA-AATAT
* *
10886646 ATAAATCATGCAATTAAATAT
1 AT-AATCATGTAATAAAATAT
10886667 ATAATCA
1 ATAATCA
10886674 ATTAAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
20 14 0.33
21 11 0.26
22 11 0.26
23 7 0.16
ACGTcount: A:0.54, C:0.07, G:0.06, T:0.33
Consensus pattern (20 bp):
ATAATCATGTAATAAAATAT
Found at i:10886666 original size:43 final size:43
Alignment explanation
Indices: 10886604--10886702 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
10886594 AACCATGCAA
* * *
10886604 ATAAA-CATGTAATGAAATATATAATC-ATGTAAATAATAATAT
1 ATAAATCATGCAATGAAATATATAATCAAT-TAAATAATAAAAC
*
10886646 ATAAATCATGCAATTAAATATATAATCAATTAAATAATAAAAC
1 ATAAATCATGCAATGAAATATATAATCAATTAAATAATAAAAC
10886689 ATAAATCATGCAAT
1 ATAAATCATGCAAT
10886703 CATGTGGATA
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
42 5 0.10
43 44 0.86
44 2 0.04
ACGTcount: A:0.56, C:0.08, G:0.05, T:0.31
Consensus pattern (43 bp):
ATAAATCATGCAATGAAATATATAATCAATTAAATAATAAAAC
Found at i:10886668 original size:23 final size:22
Alignment explanation
Indices: 10886619--10886701 Score: 73
Period size: 22 Copynumber: 3.8 Consensus size: 22
10886609 CATGTAATGA
*
10886619 AATATATAATCATGTAAATAAT
1 AATATATAATCATGCAAATAAT
*
10886641 AATATATAAATCATGC-AATTA-
1 AATATAT-AATCATGCAAATAAT
*
10886662 AATATATAATCAAT-TAAATAAT
1 AATATATAATC-ATGCAAATAAT
* *
10886684 AAAACATAAATCATGCAA
1 AATATAT-AATCATGCAA
10886702 TCATGTGGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 11
0.73 0.11 0.17
Matches are distributed among these distances:
20 4 0.08
21 13 0.27
22 18 0.38
23 13 0.27
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.31
Consensus pattern (22 bp):
AATATATAATCATGCAAATAAT
Found at i:10886677 original size:16 final size:15
Alignment explanation
Indices: 10886656--10886685 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
10886646 ATAAATCATG
10886656 CAATTAAATATATAAT
1 CAATTAAATA-ATAAT
10886672 CAATTAAATAATAA
1 CAATTAAATAATAA
10886686 AACATAAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (15 bp):
CAATTAAATAATAAT
Found at i:10886683 original size:55 final size:55
Alignment explanation
Indices: 10886488--10886683 Score: 205
Period size: 55 Copynumber: 3.6 Consensus size: 55
10886478 AATGTAAATT
* ** * * *
10886488 ATGCAAATAAACATGCAATTAAATAAATAATCAAGCAAATAAAAATATATAAACC
1 ATGCAAATAAATATATAATCAAATAAATAATCATGCAAATAATAATATATAAACC
* * * * *
10886543 ATGCAAATAAATATGCT-ATTAAATATATAATCATGCGAATAGTAATATATAAACC
1 ATGCAAATAAATAT-ATAATCAAATAAATAATCATGCAAATAATAATATATAAACC
* * * * * *
10886598 ATGCAAATAAACATGTAATGAAATATATAATCATGTAAATAATAATATATAAATC
1 ATGCAAATAAATATATAATCAAATAAATAATCATGCAAATAATAATATATAAACC
* *
10886653 ATGCAATTAAATATATAATCAATTAAATAAT
1 ATGCAAATAAATATATAATCAAATAAATAAT
10886684 AAAACATAAA
Statistics
Matches: 118, Mismatches: 21, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
54 1 0.01
55 117 0.99
ACGTcount: A:0.55, C:0.10, G:0.07, T:0.29
Consensus pattern (55 bp):
ATGCAAATAAATATATAATCAAATAAATAATCATGCAAATAATAATATATAAACC
Found at i:10886704 original size:31 final size:31
Alignment explanation
Indices: 10886676--10886793 Score: 98
Period size: 31 Copynumber: 3.8 Consensus size: 31
10886666 TATAATCAAT
*
10886676 TAAATAATAAAACATAAATCATGCAATCATG
1 TAAATAATAAAACATAAACCATGCAATCATG
** * * * *
10886707 TGGATAATAATATATAAACCATGCAA-AATA
1 TAAATAATAAAACATAAACCATGCAATCATG
* *
10886737 TCCAAT--TAAATACATAAATCATGCAATCATG
1 T-AAATAATAAA-ACATAAACCATGCAATCATG
* *
10886768 TAAATAATAATATATAAACCATGCAA
1 TAAATAATAAAACATAAACCATGCAA
10886794 AATATGTAAT
Statistics
Matches: 64, Mismatches: 18, Indels: 10
0.70 0.20 0.11
Matches are distributed among these distances:
29 3 0.05
30 19 0.30
31 39 0.61
32 3 0.05
ACGTcount: A:0.53, C:0.14, G:0.07, T:0.27
Consensus pattern (31 bp):
TAAATAATAAAACATAAACCATGCAATCATG
Found at i:10886760 original size:30 final size:29
Alignment explanation
Indices: 10886715--10886823 Score: 94
Period size: 30 Copynumber: 3.7 Consensus size: 29
10886705 TGTGGATAAT
*
10886715 AATATATAAACCATGCAAAATATCCAATTA
1 AATATATAAACCATGCAAAATAT-AAATTA
* * * * *
10886745 AATACATAAATCATGCAATCATGTAAATAA
1 AATATATAAACCATGCAA-AATATAAATTA
*
10886775 TAATATATAAACCATGCAAAATATGTAATTA
1 -AATATATAAACCATGCAAAATAT-AAATTA
* *
10886806 AATATGT-AATCATGCAAA
1 AATATATAAACCATGCAAA
10886824 TAAATATATT
Statistics
Matches: 62, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
29 10 0.16
30 29 0.47
31 23 0.37
ACGTcount: A:0.52, C:0.13, G:0.06, T:0.28
Consensus pattern (29 bp):
AATATATAAACCATGCAAAATATAAATTA
Found at i:10886760 original size:61 final size:61
Alignment explanation
Indices: 10886683--10886822 Score: 212
Period size: 61 Copynumber: 2.3 Consensus size: 61
10886673 AATTAAATAA
**
10886683 TAAA-ACATAAATCATGCAATCATGTGGATAATAATATATAAACCATGCAAAATATCCAAT
1 TAAATACATAAATCATGCAATCATGTAAATAATAATATATAAACCATGCAAAATATCCAAT
**
10886743 TAAATACATAAATCATGCAATCATGTAAATAATAATATATAAACCATGCAAAATATGTAAT
1 TAAATACATAAATCATGCAATCATGTAAATAATAATATATAAACCATGCAAAATATCCAAT
**
10886804 TAAATATGT-AATCATGCAA
1 TAAATACATAAATCATGCAA
10886823 ATAAATATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
60 14 0.19
61 59 0.81
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.29
Consensus pattern (61 bp):
TAAATACATAAATCATGCAATCATGTAAATAATAATATATAAACCATGCAAAATATCCAAT
Found at i:10886837 original size:61 final size:61
Alignment explanation
Indices: 10886683--10886839 Score: 176
Period size: 61 Copynumber: 2.6 Consensus size: 61
10886673 AATTAAATAA
* * **
10886683 TAAA-ACATAAATCATGCAATCATGTGGATAATAATATATAAACCATGCAAAATATCCAAT
1 TAAATACATAAATCATGCAATAATATAAATAATAATATATAAACCATGCAAAATATCCAAT
* * **
10886743 TAAATACATAAATCATGCAATCATGTAAATAATAATATATAAACCATGCAAAATATGTAAT
1 TAAATACATAAATCATGCAATAATATAAATAATAATATATAAACCATGCAAAATATCCAAT
** *
10886804 TAAATATGT-AATCATGCAAATAA-ATATATTAATAAT
1 TAAATACATAAATCATGC-AATAATATA-AATAATAAT
10886840 GAAGCAAATA
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
60 14 0.16
61 71 0.84
ACGTcount: A:0.52, C:0.11, G:0.07, T:0.30
Consensus pattern (61 bp):
TAAATACATAAATCATGCAATAATATAAATAATAATATATAAACCATGCAAAATATCCAAT
Found at i:10886892 original size:25 final size:25
Alignment explanation
Indices: 10886845--10886895 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
10886835 ATAATGAAGC
*
10886845 AAATATATTAATAAATCACACAAAT
1 AAATATATTAATAAATCAAACAAAT
* * *
10886870 AAATATATTAATCATTTAAACAAAT
1 AAATATATTAATAAATCAAACAAAT
10886895 A
1 A
10886896 TATTAGGCGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (25 bp):
AAATATATTAATAAATCAAACAAAT
Found at i:10887597 original size:20 final size:20
Alignment explanation
Indices: 10887554--10887597 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
10887544 CTCTTTTGAC
*
10887554 TAAAAAAATTAAAATTAAAC
1 TAAAAAAATTAAAATTAAAA
10887574 TAAAAAAATTAAAA-TACAAA
1 TAAAAAAATTAAAATTA-AAA
10887594 TAAA
1 TAAA
10887598 GTTTAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.23
Consensus pattern (20 bp):
TAAAAAAATTAAAATTAAAA
Found at i:10890939 original size:277 final size:273
Alignment explanation
Indices: 10890396--10890940 Score: 786
Period size: 277 Copynumber: 2.0 Consensus size: 273
10890386 CAACTTTCCA
* * *
10890396 ACCTCAATCCACTTTATCAACCCTAACTTGGCACACTTAGCATTGACAATCTTGACTTTTGTAAT
1 ACCTCAATCCACCTTATCAACCCTAACTTGCCACACTTAGCATTGACAATCTTGACTTTTGCAAT
*
10890461 GAAATCATGCACTAGACCTCATTATTATATAAGTTATTGGCTTTTAATGGTGCACATCATGACTC
66 GAAATCATGCACTAGACCTCATTATTATATAAGTTATTGGCTCTTAATGGTGCACATCATGACTC
* * *
10890526 TATCCATCCTGGATCCTCTTGGTCTTCATGGGATGGCTTAAGCATGTTGACATTAAAAATTAGGT
131 TATCCATCCTAGATCCTCTTGGTCTTCATGGAATGGCTTAAGCATGTTGACATAAAAAATTAGGT
* * * *
10890591 ATACCTTCGACTTTGATGGCATATACACCCTGTAGGCAATGATGCCTACCCTTTTTAGAACTCTA
196 ATACCTTCAACTTTGATAGCATATACACCCTGTAGGCAATCATGCCTACCCTTTTTAAAACTCTA
10890656 AAAGGTCTCTCAT
261 AAAGGTCTCTCAT
* * * * *
10890669 ACCTCAATCCACCTTATCAACCGTAACTTAGCCCAAACCCTTAGTATTGATAGTCTTGACTTTTG
1 ACCTCAATCCACCTTATCAACCCTAACTT-G-CC--ACACTTAGCATTGACAATCTTGACTTTTG
* * * **
10890734 CAATGAAATCATGCATTGGACCTCATTATTATATAAGTTCTTGGCTCTTAATGGTGCACATTGTG
62 CAATGAAATCATGCACTAGACCTCATTATTATATAAGTTATTGGCTCTTAATGGTGCACATCATG
* * *
10890799 ACTCTATTCATCCTAGAT-CTTTCTGGTTTTCATGGAATGGCTTAAGCATGTTGACATAAAAAAT
127 ACTCTATCCATCCTAGATCCTCT-TGGTCTTCATGGAATGGCTTAAGCATGTTGACATAAAAAAT
* * * *
10890863 TAGGTATACTTTTAACTTTGATAGCATATACAGCTTGTAGGCAATCATGCCTACCCTTTTTAAAA
191 TAGGTATACCTTCAACTTTGATAGCATATACACCCTGTAGGCAATCATGCCTACCCTTTTTAAAA
10890928 CTCTAAAAGGTCT
256 CTCTAAAAGGTCT
10890941 TTTGTACCTT
Statistics
Matches: 239, Mismatches: 28, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
273 27 0.11
274 1 0.00
275 1 0.00
276 3 0.01
277 207 0.87
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.35
Consensus pattern (273 bp):
ACCTCAATCCACCTTATCAACCCTAACTTGCCACACTTAGCATTGACAATCTTGACTTTTGCAAT
GAAATCATGCACTAGACCTCATTATTATATAAGTTATTGGCTCTTAATGGTGCACATCATGACTC
TATCCATCCTAGATCCTCTTGGTCTTCATGGAATGGCTTAAGCATGTTGACATAAAAAATTAGGT
ATACCTTCAACTTTGATAGCATATACACCCTGTAGGCAATCATGCCTACCCTTTTTAAAACTCTA
AAAGGTCTCTCAT
Found at i:10895681 original size:20 final size:20
Alignment explanation
Indices: 10895656--10895709 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
10895646 AAGCTGTACA
*
10895656 GATATGGTTTGGGCCCTTAT
1 GATATGGTTTGGGCCCTGAT
10895676 GATATGGTTTGGGCCCTGAT
1 GATATGGTTTGGGCCCTGAT
*
10895696 GATATGGTGTGGGC
1 GATATGGTTTGGGC
10895710 AGATTTGGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.15, C:0.13, G:0.37, T:0.35
Consensus pattern (20 bp):
GATATGGTTTGGGCCCTGAT
Found at i:10901294 original size:54 final size:54
Alignment explanation
Indices: 10901226--10901335 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
10901216 CCCAATAGGC
* *
10901226 ATCTGAAAAGGCTATAACACAAGATAAGGTTTGTGGTTGAATTAAAAAACCATA
1 ATCTGAAAAAGCTATAACACAAGATAAGGTTTGTGGTTGAATAAAAAAACCATA
10901280 ATCTGAAAAAGCTATAACACAAGATAAGGTTTGTGGTTGAATAAAAAAACCATA
1 ATCTGAAAAAGCTATAACACAAGATAAGGTTTGTGGTTGAATAAAAAAACCATA
10901334 AT
1 AT
10901336 TGATTGTTCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.25
Consensus pattern (54 bp):
ATCTGAAAAAGCTATAACACAAGATAAGGTTTGTGGTTGAATAAAAAAACCATA
Found at i:10901520 original size:106 final size:106
Alignment explanation
Indices: 10901335--10901538 Score: 322
Period size: 106 Copynumber: 1.9 Consensus size: 106
10901325 AAAACCATAA
* *
10901335 TTGATTGTTCCTTTTAAGTATCGAAGGACTTCTTTAAGAGCTGCATAATGAACTTGAGAAGAACA
1 TTGATTGTTCCTTTTAAGTATCGAAGGACCTCTTTAAGAGCTACATAATGAACTTGAGAAGAACA
*
10901400 ATGCATGAATTGAGATAATTAATTGACAATAAAGGCTATGT
66 ATGCATGAATTGAGATAATTAATTAACAATAAAGGCTATGT
**
10901441 TTGATTGTTCCTTTTAAGTATCGATTGACC-CTTTTAAGAGCTACATAATGAACTTGAGAACG-A
1 TTGATTGTTCCTTTTAAGTATCGAAGGACCTC-TTTAAGAGCTACATAATGAACTTGAGAA-GAA
*
10901504 CAATGCATGAATTGAGATAATTTATTAACAATAAA
64 CAATGCATGAATTGAGATAATTAATTAACAATAAA
10901539 ATCTATGTAA
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 1 0.01
106 88 0.98
107 1 0.01
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (106 bp):
TTGATTGTTCCTTTTAAGTATCGAAGGACCTCTTTAAGAGCTACATAATGAACTTGAGAAGAACA
ATGCATGAATTGAGATAATTAATTAACAATAAAGGCTATGT
Found at i:10902514 original size:204 final size:204
Alignment explanation
Indices: 10902157--10902569 Score: 817
Period size: 204 Copynumber: 2.0 Consensus size: 204
10902147 TCACATCTAA
10902157 TTGATGTAGAGGCCATTTTTGAGCTACAACAATACATAAAAAGGTTTGTGTTGTTACCAATTTTA
1 TTGATGTAGAGGCCATTTTTGAGCTACAACAATACATAAAAAGGTTTGTGTTGTTACCAATTTTA
10902222 TAATTAAACTAAATGTATCTTTGTAGTCCAAGCTAGGGTATTGGTAAAAGCCTTTTGCAACCAAT
66 TAATTAAACTAAATGTATCTTTGTAGTCCAAGCTAGGGTATTGGTAAAAGCCTTTTGCAACCAAT
*
10902287 CTAGCTTTATATCGAGGTACAATTCTATCACTATTGTATTTAACATTAAAAATCCATGTGCAACC
131 CTAGCTTTATATCGAGCTACAATTCTATCACTATTGTATTTAACATTAAAAATCCATGTGCAACC
10902352 AGTGACTTG
196 AGTGACTTG
10902361 TTGATGTAGAGGCCATTTTTGAGCTACAACAATACATAAAAAGGTTTGTGTTGTTACCAATTTTA
1 TTGATGTAGAGGCCATTTTTGAGCTACAACAATACATAAAAAGGTTTGTGTTGTTACCAATTTTA
10902426 TAATTAAACTAAATGTATCTTTGTAGTCCAAGCTAGGGTATTGGTAAAAGCCTTTTGCAACCAAT
66 TAATTAAACTAAATGTATCTTTGTAGTCCAAGCTAGGGTATTGGTAAAAGCCTTTTGCAACCAAT
10902491 CTAGCTTTATATCGAGCTACAATTCTATCACTATTGTATTTAACATTAAAAATCCATGTGCAACC
131 CTAGCTTTATATCGAGCTACAATTCTATCACTATTGTATTTAACATTAAAAATCCATGTGCAACC
10902556 AGTGACTTG
196 AGTGACTTG
10902565 TTGAT
1 TTGAT
10902570 TTGGTTGAAA
Statistics
Matches: 208, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
204 208 1.00
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (204 bp):
TTGATGTAGAGGCCATTTTTGAGCTACAACAATACATAAAAAGGTTTGTGTTGTTACCAATTTTA
TAATTAAACTAAATGTATCTTTGTAGTCCAAGCTAGGGTATTGGTAAAAGCCTTTTGCAACCAAT
CTAGCTTTATATCGAGCTACAATTCTATCACTATTGTATTTAACATTAAAAATCCATGTGCAACC
AGTGACTTG
Found at i:10907137 original size:16 final size:16
Alignment explanation
Indices: 10907116--10907149 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10907106 ATGAATGATA
10907116 ATGATGATTTATAATG
1 ATGATGATTTATAATG
*
10907132 ATGATGATTTATGATG
1 ATGATGATTTATAATG
10907148 AT
1 AT
10907150 TTTAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.44
Consensus pattern (16 bp):
ATGATGATTTATAATG
Found at i:10914027 original size:13 final size:16
Alignment explanation
Indices: 10913997--10914030 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
10913987 ACGAATGGTA
10913997 ATGATGATTTATGATG
1 ATGATGATTTATGATG
*
10914013 ATGATGATTTGTGATG
1 ATGATGATTTATGATG
10914029 AT
1 AT
10914031 TTTAAACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.26, T:0.44
Consensus pattern (16 bp):
ATGATGATTTATGATG
Found at i:10916275 original size:29 final size:29
Alignment explanation
Indices: 10916242--10916305 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
10916232 ATGTTTCATG
**
10916242 ATCAATAGGATTGATTCTAAATTTAAAGA
1 ATCAATAGGATTGATTCTAAACATAAAGA
10916271 ATCAATAGGATTGATTCTAAACATAAAGA
1 ATCAATAGGATTGATTCTAAACATAAAGA
10916300 ATCAAT
1 ATCAAT
10916306 GAAAAATGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.31
Consensus pattern (29 bp):
ATCAATAGGATTGATTCTAAACATAAAGA
Found at i:10923151 original size:21 final size:22
Alignment explanation
Indices: 10923116--10923156 Score: 75
Period size: 21 Copynumber: 1.9 Consensus size: 22
10923106 ATTTTTATTC
10923116 TTACATTCTAATAGGTTTACAA
1 TTACATTCTAATAGGTTTACAA
10923138 TTACATTC-AATAGGTTTAC
1 TTACATTCTAATAGGTTTAC
10923157 GATTTTCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (22 bp):
TTACATTCTAATAGGTTTACAA
Found at i:10934847 original size:18 final size:19
Alignment explanation
Indices: 10934824--10934859 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
10934814 TCTCTCTCTC
10934824 TCTCTTCTTTTTC-TTTTT
1 TCTCTTCTTTTTCATTTTT
*
10934842 TCTCTTTTTTTTCATTTT
1 TCTCTTCTTTTTCATTTT
10934860 ACAAGTCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (19 bp):
TCTCTTCTTTTTCATTTTT
Found at i:10935352 original size:17 final size:16
Alignment explanation
Indices: 10935330--10935361 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
10935320 TTATGTTGAT
10935330 TGTGTTTGTTTTTATTG
1 TGTGTTT-TTTTTATTG
10935347 TGTGTTTTTTTTATT
1 TGTGTTTTTTTTATT
10935362 ATTTTTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.06, C:0.00, G:0.19, T:0.75
Consensus pattern (16 bp):
TGTGTTTTTTTTATTG
Found at i:10935556 original size:18 final size:17
Alignment explanation
Indices: 10935521--10935563 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
10935511 TAGAAATTAA
10935521 AAAATGAAAGAAACAAAT
1 AAAA-GAAAGAAACAAAT
* *
10935539 CAAAAGAAATAAATAAAT
1 -AAAAGAAAGAAACAAAT
10935557 AAAAGAA
1 AAAAGAA
10935564 GGATAAAGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 11 0.50
19 4 0.18
ACGTcount: A:0.74, C:0.05, G:0.09, T:0.12
Consensus pattern (17 bp):
AAAAGAAAGAAACAAAT
Found at i:10939434 original size:23 final size:23
Alignment explanation
Indices: 10939408--10939453 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
10939398 AAGTAAGCAC
*
10939408 CACAAATGTTTCATTGAAACTAT
1 CACAAATGTTCCATTGAAACTAT
10939431 CACAAATGTTCCATTGAAACTAT
1 CACAAATGTTCCATTGAAACTAT
10939454 GTTAGCTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (23 bp):
CACAAATGTTCCATTGAAACTAT
Found at i:10939987 original size:91 final size:88
Alignment explanation
Indices: 10939883--10940048 Score: 199
Period size: 88 Copynumber: 1.9 Consensus size: 88
10939873 AAGATTGAAT
* * * *
10939883 AGATTAAAAAGAAACCATTATTGGTTTATGAACAACTTAAATAATAATAGG-TTTTGAAATACAA
1 AGATTAAAAAGAAACCATTATTGATTTAT--A-AACTTAAATAATAATAGGCTGTAGAAAGA-AA
*
10939947 ACATCAAAAGCATCTTTAATGATAAAC
62 AAATCAAAAGCATCTTTAATGATAAAC
* ** * *
10939974 AGATTAAAGAGAAACTGTTATTGATTTCTAAACTTAAATATTAATAGGCTGTAGAAAGAAAAAAT
1 AGATTAAAAAGAAACCATTATTGATTTATAAACTTAAATAATAATAGGCTGTAGAAAGAAAAAAT
10940039 CAAAAGCATC
66 CAAAAGCATC
10940049 ATGGACATCC
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
88 32 0.50
89 8 0.12
91 24 0.38
ACGTcount: A:0.48, C:0.10, G:0.13, T:0.29
Consensus pattern (88 bp):
AGATTAAAAAGAAACCATTATTGATTTATAAACTTAAATAATAATAGGCTGTAGAAAGAAAAAAT
CAAAAGCATCTTTAATGATAAAC
Found at i:10948959 original size:2 final size:2
Alignment explanation
Indices: 10948952--10948976 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10948942 AAACAAATTC
10948952 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
10948977 ATAAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:10949996 original size:18 final size:18
Alignment explanation
Indices: 10949973--10950011 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
10949963 CAATTATGTT
10949973 AAAAATGATTAAAAATAA
1 AAAAATGATTAAAAATAA
* **
10949991 AAAAATTATTTCAAATAA
1 AAAAATGATTAAAAATAA
10950009 AAA
1 AAA
10950012 TGTTTTTAAG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.26
Consensus pattern (18 bp):
AAAAATGATTAAAAATAA
Found at i:10950212 original size:2 final size:2
Alignment explanation
Indices: 10950205--10950236 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10950195 GTTGTTCAAT
10950205 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
10950237 TATATATACA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:10950311 original size:20 final size:20
Alignment explanation
Indices: 10950288--10950328 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10950278 GCAAATGAAT
10950288 TGAAAAAAAAAAAAATTTTA
1 TGAAAAAAAAAAAAATTTTA
* * *
10950308 TGAAAAAGAACAAATTTTTA
1 TGAAAAAAAAAAAAATTTTA
10950328 T
1 T
10950329 AATTAGTGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
TGAAAAAAAAAAAAATTTTA
Found at i:10952230 original size:62 final size:60
Alignment explanation
Indices: 10952033--10952254 Score: 182
Period size: 59 Copynumber: 3.7 Consensus size: 60
10952023 TAATTAAAAG
* * * * *
10952033 GGATTATTCAAGGCGTTTTTGGCCA-AAACACCTTGAATAACCCCATTAAAAAATGGGAGG
1 GGATTATTCAAGGCATTTTTGGCCAGAAACACCTTGAATAA-TCCATAAAAAAATGAGAGA
* * ** * * *
10952093 GGATTATTGAA-GCA-TTTTCGATAGAAAAATGCCTTGAATAATCC-TAAAAAAATGAAAAA
1 GGATTATTCAAGGCATTTTTGGCCAGAAACA--CCTTGAATAATCCATAAAAAAATGAGAGA
* * *
10952152 GGATTATTCAATGCATTTTTGGCCAGAAACACCTTGAATAATCTCAAAAAAAAATTTAGAGA
1 GGATTATTCAAGGCATTTTTGGCCAGAAACACCTTGAATAATC-CATAAAAAAA-TGAGAGA
* * * * **
10952214 GGATTATTGAAGGCATTTCTAGCCATAAATGCCTTGAATAA
1 GGATTATTCAAGGCATTTTTGGCCAGAAACACCTTGAATAA
10952255 CCCCATTTAA
Statistics
Matches: 126, Mismatches: 28, Indels: 14
0.75 0.17 0.08
Matches are distributed among these distances:
58 6 0.05
59 38 0.30
60 16 0.13
61 28 0.22
62 38 0.30
ACGTcount: A:0.40, C:0.14, G:0.18, T:0.28
Consensus pattern (60 bp):
GGATTATTCAAGGCATTTTTGGCCAGAAACACCTTGAATAATCCATAAAAAAATGAGAGA
Found at i:10952250 original size:121 final size:118
Alignment explanation
Indices: 10952028--10952254 Score: 287
Period size: 121 Copynumber: 1.9 Consensus size: 118
10952018 ATTTTTAATT
* * ** * *
10952028 AAAAGGGATTATTCAAGGCGTTTTTGGCCAAAACACCTTGAATAACCCCATTAAAAAATGGGAGG
1 AAAAAGGATTATTCAAGGCATTTTTGGCCAAAACACCTTGAATAACCCCAAAAAAAAATGAGAGA
10952093 GGATTATTGAAGCATTTTCGATAGAAAAATGCCTTGAATAATCCTAAAAAAATG
66 GGATTATTGAAGCATTTTC-ATAGAAAAATGCCTTGAATAATCCTAAAAAAATG
* * * *
10952147 AAAAAGGATTATTCAATGCATTTTTGGCCAGAAACACCTTGAATAATCTCAAAAAAAAATTTAGA
1 AAAAAGGATTATTCAAGGCATTTTTGGCCA-AAACACCTTGAATAACCCCAAAAAAAAA-TGAGA
*
10952212 GAGGATTATTGAAGGCA-TTTC-TAGCCATAAATGCCTTGAATAA
64 GAGGATTATTGAA-GCATTTTCATAG--AAAAATGCCTTGAATAA
10952255 CCCCATTTAA
Statistics
Matches: 92, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
119 30 0.33
120 24 0.26
121 35 0.38
122 3 0.03
ACGTcount: A:0.41, C:0.14, G:0.18, T:0.27
Consensus pattern (118 bp):
AAAAAGGATTATTCAAGGCATTTTTGGCCAAAACACCTTGAATAACCCCAAAAAAAAATGAGAGA
GGATTATTGAAGCATTTTCATAGAAAAATGCCTTGAATAATCCTAAAAAAATG
Found at i:10953956 original size:32 final size:33
Alignment explanation
Indices: 10953919--10953990 Score: 101
Period size: 34 Copynumber: 2.2 Consensus size: 33
10953909 AAAACGCTAC
*
10953919 TAAATGCCA-AAATGTAGTAGCATTTTCTACTA
1 TAAATGCCACAAATGTAATAGCATTTTCTACTA
* *
10953951 TAAATGCCACTAAATTTAATGGCATTTTCTACTA
1 TAAATGCCAC-AAATGTAATAGCATTTTCTACTA
10953985 TAAATG
1 TAAATG
10953991 TCAATTTAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
32 9 0.26
34 26 0.74
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (33 bp):
TAAATGCCACAAATGTAATAGCATTTTCTACTA
Found at i:10954005 original size:30 final size:31
Alignment explanation
Indices: 10953938--10954008 Score: 81
Period size: 34 Copynumber: 2.2 Consensus size: 31
10953928 AAATGTAGTA
*
10953938 GCATTTTCTACTATAAATGCCACTAAATTTAATG
1 GCATTTTCTACTATAAATG---CTAAATTTAACG
* *
10953972 GCATTTTCTACTATAAATG-TCAATTTAGCG
1 GCATTTTCTACTATAAATGCTAAATTTAACG
10954002 GCATTTT
1 GCATTTT
10954009 TCTAGAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
30 15 0.44
34 19 0.56
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (31 bp):
GCATTTTCTACTATAAATGCTAAATTTAACG
Found at i:10954395 original size:7 final size:7
Alignment explanation
Indices: 10954383--10954408 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
10954373 GCATTAAAAT
10954383 TTGATAA
1 TTGATAA
10954390 TTGATAA
1 TTGATAA
10954397 TTGATAA
1 TTGATAA
10954404 TTGAT
1 TTGAT
10954409 GAATATTCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (7 bp):
TTGATAA
Found at i:10956857 original size:134 final size:135
Alignment explanation
Indices: 10956704--10956968 Score: 318
Period size: 134 Copynumber: 2.0 Consensus size: 135
10956694 TTATAAAATA
* * * *
10956704 CCGTTAAATTAAAGGTGTTTGTATCTGAAAAACGTC-GCTATTTTAGTGGCGTTTGTATCTTTGA
1 CCGTTAAATTAAAGATGTTTGTATCTGAAAAACG-CAACTATTTTAGCGGCATTTGTATCTTTGA
* * * * * * **
10956768 GACGCTACTAATTTAGTGACGTTTTTAACA-CAAAATATCGTTATTATGATGGCATTTAAATGAT
65 GACGCCACTAATATAGTGACATTTTTAACAGAAAAACACCACTATTATGATGGCATTTAAATGAT
10956832 AAGACG
130 AAGACG
** * * *
10956838 CCGTTAAATTAGCGATGTTTGTATCTGAAAAATGCAATTATTTTAGCGGCATTTGTATCTTTTAG
1 CCGTTAAATTAAAGATGTTTGTATCTGAAAAACGCAACTATTTTAGCGGCATTTGTATCTTTGAG
* * * *
10956903 ACGCCGCTAATATAGTGGCATTTTTATCAGAAAAACACCACTATTATGATGGCATTTAAATTATA
66 ACGCCACTAATATAGTGACATTTTTAACAGAAAAACACCACTATTATGATGGCATTTAAATGATA
10956968 A
131 A
10956969 AATTAGCGGC
Statistics
Matches: 108, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
133 1 0.01
134 77 0.71
135 30 0.28
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (135 bp):
CCGTTAAATTAAAGATGTTTGTATCTGAAAAACGCAACTATTTTAGCGGCATTTGTATCTTTGAG
ACGCCACTAATATAGTGACATTTTTAACAGAAAAACACCACTATTATGATGGCATTTAAATGATA
AGACG
Found at i:10961296 original size:3 final size:3
Alignment explanation
Indices: 10961288--10961360 Score: 85
Period size: 3 Copynumber: 24.7 Consensus size: 3
10961278 AAAGAAAAGC
* * * * * *
10961288 AAT AAT AAT AAT AAT AAT GAT GAT GAT GAT GAT GAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10961336 -AT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
10961361 GAAAGTAAAA
Statistics
Matches: 67, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
2 2 0.03
3 65 0.97
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:10961676 original size:39 final size:39
Alignment explanation
Indices: 10961629--10961706 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
10961619 AAAACTTAAA
10961629 TTAAAACAATAGCATTTAATTTAAGCACTAAATAAAATT
1 TTAAAACAATAGCATTTAATTTAAGCACTAAATAAAATT
10961668 TTAAAACAATAGCATTTAATTTAAGCACTAAATAAAATT
1 TTAAAACAATAGCATTTAATTTAAGCACTAAATAAAATT
10961707 AGACTATGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.51, C:0.10, G:0.05, T:0.33
Consensus pattern (39 bp):
TTAAAACAATAGCATTTAATTTAAGCACTAAATAAAATT
Found at i:10961842 original size:58 final size:57
Alignment explanation
Indices: 10961757--10961869 Score: 181
Period size: 58 Copynumber: 2.0 Consensus size: 57
10961747 TATTTCAGAC
* *
10961757 GTACCTTTATAATTAGATTTATATGTTTTCAGAAGAAGAACAACCAATGAAATAGAT
1 GTACCTTTATAATTAAACTTATATGTTTTCAGAAGAAGAACAACCAATGAAATAGAT
* *
10961814 GTACCTTTAATAATTAAACTTATGTGTTTTCAGAAGAAGCACAACCAATGAAATAG
1 GTACCTTT-ATAATTAAACTTATATGTTTTCAGAAGAAGAACAACCAATGAAATAG
10961870 GCAATGTGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 8 0.16
58 43 0.84
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (57 bp):
GTACCTTTATAATTAAACTTATATGTTTTCAGAAGAAGAACAACCAATGAAATAGAT
Found at i:10962533 original size:30 final size:30
Alignment explanation
Indices: 10962497--10962553 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
10962487 AGCCAAACAA
*
10962497 TAAACAATTATATATAATCTAAACAATATG
1 TAAACAATTATATATAATCGAAACAATATG
10962527 TAAACAATTATATATAATCGAAACAAT
1 TAAACAATTATATATAATCGAAACAAT
10962554 TATATAAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.54, C:0.11, G:0.04, T:0.32
Consensus pattern (30 bp):
TAAACAATTATATATAATCGAAACAATATG
Found at i:10962644 original size:31 final size:30
Alignment explanation
Indices: 10962588--10962646 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 30
10962578 AATGCTTTAT
10962588 TATATATATTTAATTGAAAAAGCCACCATA
1 TATATATATTTAATTGAAAAAGCCACCATA
* *
10962618 TATATAGTATTTGATT-ACAAATGCCACCA
1 TATATA-TATTTAATTGA-AAAAGCCACCA
10962647 CCTTAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.34
Consensus pattern (30 bp):
TATATATATTTAATTGAAAAAGCCACCATA
Found at i:10970629 original size:305 final size:305
Alignment explanation
Indices: 10970073--10970683 Score: 1177
Period size: 305 Copynumber: 2.0 Consensus size: 305
10970063 AACAAATATC
*
10970073 ATATTAAGCAGATGGCTAATGCAAATATAAATTAAAATGTAGATGACTAATTTGATCCATCTAAT
1 ATATGAAGCAGATGGCTAATGCAAATATAAATTAAAATGTAGATGACTAATTTGATCCATCTAAT
*
10970138 GTACATTTAATTTTTCATTTTTATTTAGGAATAATATGGGAATTCTTAGTTTCAAATTATTTCTT
66 GTACATTTAATTTTTCATTTTTATTTAGGAATAATATGGGAATTCTTAGTTTCAAATTATTTCCT
*
10970203 AATTTCCTAATATCTAGGCAGAACTTTGAAAAGTTTTTCTCCACTTTGAATTCACTAGATATTCC
131 AATTTCCTAATATCTAGACAGAACTTTGAAAAGTTTTTCTCCACTTTGAATTCACTAGATATTCC
10970268 TTAAATTTTAGTGTAAAATTATTCAATAAAATGTAATTATTGAAAAACCTTTCAATATTTAGGTA
196 TTAAATTTTAGTGTAAAATTATTCAATAAAATGTAATTATTGAAAAACCTTTCAATATTTAGGTA
*
10970333 GGGTCTCAACGATTATTTTCACATAGGCATATTAATCATTATTGA
261 GGCTCTCAACGATTATTTTCACATAGGCATATTAATCATTATTGA
10970378 ATATGAAGCAGATGGCTAATGCAAATATAAATTAAAATGTAGATGACTAATTTGATCCATCTAAT
1 ATATGAAGCAGATGGCTAATGCAAATATAAATTAAAATGTAGATGACTAATTTGATCCATCTAAT
10970443 GTACATTTAATTTTTCATTTTTATTTAGGAATAATATGGGAATTCTTAGTTTCAAATTATTTCCT
66 GTACATTTAATTTTTCATTTTTATTTAGGAATAATATGGGAATTCTTAGTTTCAAATTATTTCCT
10970508 AATTTCCTAATATCTAGACAGAACTTTGAAAAGTTTTTCTCCACTTTGAATTCACTAGATATTCC
131 AATTTCCTAATATCTAGACAGAACTTTGAAAAGTTTTTCTCCACTTTGAATTCACTAGATATTCC
*
10970573 TTAAATTTTGGTGTAAAATTATTCAATAAAATGTAATTATTGAAAAACCTTTCAATATTTAGGTA
196 TTAAATTTTAGTGTAAAATTATTCAATAAAATGTAATTATTGAAAAACCTTTCAATATTTAGGTA
10970638 GGCTCTCAACGATTATTTTCACATAGGCATATTAATCATTATTGA
261 GGCTCTCAACGATTATTTTCACATAGGCATATTAATCATTATTGA
10970683 A
1 A
10970684 AAAAATTCAT
Statistics
Matches: 301, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
305 301 1.00
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (305 bp):
ATATGAAGCAGATGGCTAATGCAAATATAAATTAAAATGTAGATGACTAATTTGATCCATCTAAT
GTACATTTAATTTTTCATTTTTATTTAGGAATAATATGGGAATTCTTAGTTTCAAATTATTTCCT
AATTTCCTAATATCTAGACAGAACTTTGAAAAGTTTTTCTCCACTTTGAATTCACTAGATATTCC
TTAAATTTTAGTGTAAAATTATTCAATAAAATGTAATTATTGAAAAACCTTTCAATATTTAGGTA
GGCTCTCAACGATTATTTTCACATAGGCATATTAATCATTATTGA
Found at i:10971818 original size:17 final size:18
Alignment explanation
Indices: 10971781--10971818 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
10971771 TCTTTTTTTT
*
10971781 TTCCTTTTTTTTCCTCATC
1 TTCCTTTTTTCTCCT-ATC
10971800 TTCCTTTTTTCTCCT-TC
1 TTCCTTTTTTCTCCTATC
10971817 TT
1 TT
10971819 TTTCTTCTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
19 14 0.78
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.66
Consensus pattern (18 bp):
TTCCTTTTTTCTCCTATC
Found at i:10971961 original size:21 final size:22
Alignment explanation
Indices: 10971854--10971967 Score: 69
Period size: 21 Copynumber: 5.2 Consensus size: 22
10971844 GCCTTCTCTC
*
10971854 TCTTTTTTTC-TCTTTCTTTT-T
1 TCTTATTTTCTTC-TTCTTTTCT
* *
10971875 TCTTTTTTTTTTCCTT-TTTT-T
1 TCTTATTTTCTT-CTTCTTTTCT
*
10971896 TCCTT-TTTCTCTTACTTCTTCTCT
1 T-CTTATTT-TCTT-CTTCTTTTCT
* *
10971920 TACTTCTTTTCTTCTTCTTTTGT
1 T-CTTATTTTCTTCTTCTTTTCT
*
10971943 TCTTATTTTTTTC-TCTTTTCT
1 TCTTATTTTCTTCTTCTTTTCT
10971964 TCTT
1 TCTT
10971968 CTTCCTCCCT
Statistics
Matches: 76, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
21 29 0.38
22 22 0.29
23 13 0.17
24 9 0.12
25 3 0.04
ACGTcount: A:0.03, C:0.22, G:0.01, T:0.75
Consensus pattern (22 bp):
TCTTATTTTCTTCTTCTTTTCT
Found at i:10971970 original size:11 final size:11
Alignment explanation
Indices: 10971854--10971970 Score: 75
Period size: 11 Copynumber: 10.6 Consensus size: 11
10971844 GCCTTCTCTC
*
10971854 TCTTTTTTTC-
1 TCTTCTTTTCT
10971864 TCTTTCTTTT-T
1 TC-TTCTTTTCT
* *
10971875 TCTTTTTTTTT
1 TCTTCTTTTCT
10971886 TCCTT-TTTT-T
1 T-CTTCTTTTCT
10971896 TCCTT-TTTCTCT
1 T-CTTCTTT-TCT
*
10971908 TACTTCTTCTCT
1 T-CTTCTTTTCT
10971920 TACTTCTTTTCT
1 T-CTTCTTTTCT
*
10971932 TCTTCTTTTGT
1 TCTTCTTTTCT
* *
10971943 TCTTATTTTTT
1 TCTTCTTTTCT
10971954 TC-TCTTTTCT
1 TCTTCTTTTCT
10971964 TCTTCTT
1 TCTTCTT
10971971 CCTCCCTAAG
Statistics
Matches: 89, Mismatches: 10, Indels: 15
0.78 0.09 0.13
Matches are distributed among these distances:
10 25 0.28
11 39 0.44
12 23 0.26
13 2 0.02
ACGTcount: A:0.03, C:0.22, G:0.01, T:0.74
Consensus pattern (11 bp):
TCTTCTTTTCT
Found at i:10976559 original size:13 final size:13
Alignment explanation
Indices: 10976541--10976568 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10976531 GATAAAACCT
10976541 TTTTGGTTGTTTA
1 TTTTGGTTGTTTA
10976554 TTTTGGTTGTTTA
1 TTTTGGTTGTTTA
10976567 TT
1 TT
10976569 AGAACATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.21, T:0.71
Consensus pattern (13 bp):
TTTTGGTTGTTTA
Found at i:10984498 original size:6 final size:6
Alignment explanation
Indices: 10984487--10984526 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
10984477 TTATTTATTT
10984487 AATATA AATATA AATATA AATATA AATATA AATATA AATA
1 AATATA AATATA AATATA AATATA AATATA AATATA AATA
10984527 CATAAATACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
AATATA
Found at i:10984539 original size:18 final size:18
Alignment explanation
Indices: 10984487--10984542 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 18
10984477 TTATTTATTT
*
10984487 AATATAAATATAAATATA
1 AATATAAATACAAATATA
*
10984505 AATATAAATATAAATATA
1 AATATAAATACAAATATA
*
10984523 AATACATAAATACATATATA
1 AAT--ATAAATACAAATATA
10984543 TCAGTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
18 21 0.62
20 13 0.38
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (18 bp):
AATATAAATACAAATATA
Found at i:10985793 original size:51 final size:52
Alignment explanation
Indices: 10985738--10985837 Score: 141
Period size: 51 Copynumber: 1.9 Consensus size: 52
10985728 AATGAAACTA
* *
10985738 TAATAATAATAAAATATATTTTGAAAAAAAGTTA-TAAACAAA-AAAAAATTG
1 TAATAATAATAAAATATATCTTG-AAAAAAGTTACTAAAAAAATAAAAAATTG
* *
10985789 TAATAGTAATAGAATATATCTTGAAAAAAGTTACTAAAAAAATAAAAAA
1 TAATAATAATAAAATATATCTTGAAAAAAGTTACTAAAAAAATAAAAAA
10985838 ATTAATGTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
50 10 0.23
51 27 0.63
52 6 0.14
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (52 bp):
TAATAATAATAAAATATATCTTGAAAAAAGTTACTAAAAAAATAAAAAATTG
Found at i:10986516 original size:822 final size:822
Alignment explanation
Indices: 10984904--10986524 Score: 2408
Period size: 822 Copynumber: 2.0 Consensus size: 822
10984894 TTTTCATAAA
*
10984904 AATGAAACTATCATAACAATAAAATATATCTTAGAAAAAAGTTATAAATAAAAAAATAAATTGCA
1 AATGAAACTATAATAACAATAAAATATATCTTAGAAAAAAGTTATAAATAAAAAAATAAATTGCA
* *
10984969 ATAGTAATAGAATATACATTGAAAAAAAGTTATTGAAAAAATAAAAAAATTGAAGTATAACACAA
66 ATAGTAATAGAATATACATTGAAAAAAAGTTACTAAAAAAATAAAAAAATTGAAGTATAACACAA
* * * *
10985034 TATATTTATAGTCTTAGATTTGTAGAAGAATTCTTTAATGATAATCAAGATTAAATAGATAATTT
131 TATATTTATAGTCTTAGATTTGTAAAAAAAATCTTTAATGATAATCAAGATTAAATAAATAATTT
*
10985099 TTAAATTAATTTTTTAAAATTTAAAATGAATATAATAAGTGATAAAGATAACATTAAATTTTTTG
196 TTAAATTAATTTTTTAAAATTTAAAATGAATATAAGAAGTGATAAAGATAACATTAAATTTTTTG
* * *
10985164 CATTTATTTGAAATATGAATTTGATAATTAGAGTTTAAATGGATATAATCGTTTTGATTATCTTA
261 CATTTATTTGAAATATAAATTTGATAATTAGAGTTCAAATGGATATAATCGTTTTGAATATCTTA
* * * *
10985229 TTATTTAAAAATTTAAGATAAATTTTTTTTGAATTTTTAAAATCTTAAAAAAAATTGCCTGAATA
326 TTATTTAAAAATTCAAGATAAATATTTTTAGAATTTGTAAAATCTTAAAAAAAATTGCCTGAATA
* * *
10985294 TTTAATGTGTTACTTAAGTTTTTTTAAAAGATAATTTTTTAAATCAAGATAAAAAAATTGTTGAA
391 TTTAATGTGTTACGTAAATTTTTTTAAAAGATAATTTTTTAAATCAAGATAAAAAAATTGTTAAA
*
10985359 AGATTTGCATAAACTTAATTTTTGTAATTTTTAAACATATTTGAAAGATTTTGATAATTAAATAT
456 AGATTTGCATAAACTTAATTTTTGTAATTTTTAAACATATTTGAAAGAATTTGATAATTAAATAT
* * * * * * *
10985424 TTTTTTAAATAAGGTTTTTGGTAAGCAACTAAAATTATTTATTTAAAAAATAAAATCCATATTTC
521 TTATTTAAATAAAGTTTTTGGCAAACAACCAAAATTATATATTAAAAAAATAAAATCCATATTTC
10985489 ATATTTTTAATTTTAAAAAATATATCTTTAAAAGTATTTGATTTTCAATTATAATTTGAATAATT
586 ATATTTTTAATTTTAAAAAATATATCTTTAAAAGTATTTGATTTTCAATTATAATTTGAATAATT
*
10985554 TTGATATTTGAATAAATTTAAAATTATCTAATTTATAATTAAAAAAATATCTTGTTCTTTTAAAA
651 TTGATATTTGAATAAATTTAAAATTATCTAATTTATAATTAAAAAAATATCTTATTCTTTTAAAA
* * **
10985619 AACTATCTTATGTGTCATTCAAGATAATTATCCACATAAGCATCAATGTGGTAAACTTATTTATA
716 AACTATCTTATGTGTCATTCAAGAGAATTATCCACATAAACATC-ATGTGACAAACTTATTTATA
* *
10985684 TATGTTGTTATATAATATATATATATATATATATATTAGATGAG
780 CATATTGTTATAT-ATATATATATATATATATATATTAGATGAG
* * * *
10985728 AATGAAACTATAATAATAATAAAATATAT-TTTGAAAAAAAGTTATAAA-CAAAAAA-AAATTGT
1 AATGAAACTATAATAACAATAAAATATATCTTAG-AAAAAAGTTATAAATAAAAAAATAAATTGC
*
10985790 AATAGTAATAGAATATATC-TTG-AAAAAAGTTACTAAAAAAATAAAAAAATT-AATGTATTACA
65 AATAGTAATAGAATATA-CATTGAAAAAAAGTTACTAAAAAAATAAAAAAATTGAA-GTATAACA
* * * * *
10985852 CATTATATTTGTAGTCTTA-ATTTGTCAAAAAAAAT-TTTAGTGATAATTAGGATTAAATAAATA
128 CAATATATTTATAGTCTTAGATTTGT-AAAAAAAATCTTTAATGATAATCAAGATTAAATAAATA
* *
10985915 ATTTTTAAATTAATTTTTTAAAATTTAAAAT-AGATATTAGAAGCT-AT-AAGATAATATTAAAT
192 ATTTTTAAATTAATTTTTTAAAATTTAAAATGA-ATATAAGAAG-TGATAAAGATAACATTAAAT
10985977 TTTTTGCATTTATTTGAAATATAAATTTGATAATTAGAGTTCAAATGGATATAATCGTTTTGAAT
255 TTTTTGCATTTATTTGAAATATAAATTTGATAATTAGAGTTCAAATGGATATAATCGTTTTGAAT
* * *
10986042 ATCTTATTATTTAAAAATTCAAGATGAAA-ATTTTTAGAATTTGTAAAATCTTACATAAAGTTGC
320 ATCTTATTATTTAAAAATTCAAGAT-AAATATTTTTAGAATTTGTAAAATCTTAAAAAAAATTGC
* *
10986106 TTGAATATTTAATGTTTTACGTAAATTTTTTTAAAAGATAATTTTTTAAATCAAGATAAAAAAAT
384 CTGAATATTTAATGTGTTACGTAAATTTTTTTAAAAGATAATTTTTTAAATCAAGAT-AAAAAA-
*
10986171 ATTGTTAAAAGATTT-CGATAAACTTAATTTTTGTAATTTTTAAACATGTTTGAAAGAATTTGAT
447 ATTGTTAAAAGATTTGC-ATAAACTTAATTTTTGTAATTTTTAAACATATTTGAAAGAATTTGAT
*
10986235 AATTAAATATTTATTTAAATAAAGTTATTTGGCAAACAACCAAAATTATATGTTAAAAAAATAAA
511 AATTAAATATTTATTTAAATAAAGTT-TTTGGCAAACAACCAAAATTATATATTAAAAAAATAAA
* * *
10986300 ATCTATGTTTCATATTTTTAATTTTAAAAAATATATCTTT-AAATTGATTTGATTTTCAATTATA
575 ATCCATATTTCATATTTTTAATTTTAAAAAATATATCTTTAAAAGT-ATTTGATTTTCAATTATA
*
10986364 ATTTGAATAATTTTGATATTTGAATAAATTTAAAATTATCTAATTTGTAATTAAAAAAACTATCT
639 ATTTGAATAATTTTGATATTTGAATAAATTTAAAATTATCTAATTTATAATTAAAAAAA-TATCT
* * * * * *
10986429 TATTCTTTTAAAAAAACTATTTTATGTGTTATTTAAGAGAGTTGTCCACGTAAACATC-TGTGAC
703 TATTCTTTT-AAAAAACTATCTTATGTGTCATTCAAGAGAATTATCCACATAAACATCATGTGAC
* * *
10986493 AAATTTGTTTATGCATATTGTTATATATATAT
767 AAACTTATTTATACATATTGTTATATATATAT
10986525 TAGATTGCTT
Statistics
Matches: 718, Mismatches: 65, Indels: 31
0.88 0.08 0.04
Matches are distributed among these distances:
819 183 0.25
820 83 0.12
821 151 0.21
822 197 0.27
823 23 0.03
824 81 0.11
ACGTcount: A:0.44, C:0.05, G:0.09, T:0.42
Consensus pattern (822 bp):
AATGAAACTATAATAACAATAAAATATATCTTAGAAAAAAGTTATAAATAAAAAAATAAATTGCA
ATAGTAATAGAATATACATTGAAAAAAAGTTACTAAAAAAATAAAAAAATTGAAGTATAACACAA
TATATTTATAGTCTTAGATTTGTAAAAAAAATCTTTAATGATAATCAAGATTAAATAAATAATTT
TTAAATTAATTTTTTAAAATTTAAAATGAATATAAGAAGTGATAAAGATAACATTAAATTTTTTG
CATTTATTTGAAATATAAATTTGATAATTAGAGTTCAAATGGATATAATCGTTTTGAATATCTTA
TTATTTAAAAATTCAAGATAAATATTTTTAGAATTTGTAAAATCTTAAAAAAAATTGCCTGAATA
TTTAATGTGTTACGTAAATTTTTTTAAAAGATAATTTTTTAAATCAAGATAAAAAAATTGTTAAA
AGATTTGCATAAACTTAATTTTTGTAATTTTTAAACATATTTGAAAGAATTTGATAATTAAATAT
TTATTTAAATAAAGTTTTTGGCAAACAACCAAAATTATATATTAAAAAAATAAAATCCATATTTC
ATATTTTTAATTTTAAAAAATATATCTTTAAAAGTATTTGATTTTCAATTATAATTTGAATAATT
TTGATATTTGAATAAATTTAAAATTATCTAATTTATAATTAAAAAAATATCTTATTCTTTTAAAA
AACTATCTTATGTGTCATTCAAGAGAATTATCCACATAAACATCATGTGACAAACTTATTTATAC
ATATTGTTATATATATATATATATATATATATATTAGATGAG
Found at i:10988420 original size:64 final size:60
Alignment explanation
Indices: 10988152--10988646 Score: 346
Period size: 59 Copynumber: 8.4 Consensus size: 60
10988142 GTGTTTATTC
* * * * * * *
10988152 AAGGAAAATTAATACTTTCAACTTTTTCTCAAAA-AGCATCTTTTAT-AA-TTTTTATTTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATA--TTTTTTTTTGAAGTTTTTATTTTT
* * * * * ** * **
10988211 AAGAAAAATTGATACTCTCAACTTTTCCTCAAAA-AATATTTTTTGAAAATTTCAACTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTTTGAAGTTTTTATTTTT
* * * * *
10988270 AAGGAAAATTGATACATTCAACTTTTCCCTAAAGTA-----TTTTGAAATTTTCATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTTTGAAGTTTTTATTTTT
* **
10988325 AAGGAAAATTAATACTTTCAACTTTTCCTTAAAATATTTTTCTTTTAGATTTTTTTTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTT-TTTT-GA--AGTTTTTATTTTT
* * * *
10988389 TAGGAAAATTGATACCTTCAACTTTTCCTT-AAA-ACTTTTTTTTGAAGTTTTTATTTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTTTGAAGTTTTTATTTTT
* * * * * * *
10988447 AAGGAAAATTGATACTTTCAAATTTTCCTTAAAGTATATTTTTTTGAA-ATTTGATCTTC
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTTTGAAGTTTTTATTTTT
* * * * * *
10988506 AAGGAAATTTGATACTTTCAAGTTTTTCTTAAAGTA-TTTTTTTT-AA--TTTGATCTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTTTGAAGTTTTTATTTTT
* * * *
10988562 AAGGAAAATTGATACTTTTAATTTTTTC-TAAAAGTA-TTTTTTTTGAAAATTTTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAA-TATTTTTTTTTG-AAGTTTTTATTTTT
*
10988622 AAGAAAAATTGACT-CTTT-AACTTTT
1 AAGGAAAATTGA-TACTTTCAACTTTT
10988647 TTTGAAAATT
Statistics
Matches: 360, Mismatches: 56, Indels: 40
0.79 0.12 0.09
Matches are distributed among these distances:
55 52 0.14
56 44 0.12
57 9 0.03
58 48 0.13
59 114 0.32
60 37 0.10
61 9 0.03
62 7 0.02
63 3 0.01
64 37 0.10
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (60 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTTTGAAGTTTTTATTTTT
Found at i:10988427 original size:57 final size:55
Alignment explanation
Indices: 10988374--10988576 Score: 162
Period size: 58 Copynumber: 3.6 Consensus size: 55
10988364 TTCTTTTAGA
** *
10988374 TTTT-TTTTTATTTTTTAGGAAAATTGATACCTTCAACTTTTCCTTAAAACTTTT
1 TTTTATTTTTATTTTCAAGGAAAATTGATACCTTCAAATTTTCCTTAAAACTTTT
*
10988428 TTTTGAAGTTTTTATTTTCAAGGAAAATTGATACTTTCAAATTTTCCTTAAAGTA-TATTT
1 TTTT--A-TTTTTATTTTCAAGGAAAATTGATACCTTCAAATTTTCCTTAAA--ACT-TTT
* * * * * * *
10988488 TTTTGAAATTTGATCTTCAAGGAAATTTGATACTTTCAAGTTTTTCTTAAAGTA-TTTT
1 TTTT--ATTTTTATTTTCAAGGAAAATTGATACCTTCAAATTTTCCTTAAA--ACTTTT
* *
10988546 TTTTAATTTGATCTTT-AAGGAAAATTGATAC
1 TTTTATTTTTAT-TTTCAAGGAAAATTGATAC
10988577 TTTTAATTTT
Statistics
Matches: 129, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
54 4 0.03
56 22 0.17
57 2 0.02
58 47 0.36
59 43 0.33
60 11 0.09
ACGTcount: A:0.30, C:0.09, G:0.10, T:0.51
Consensus pattern (55 bp):
TTTTATTTTTATTTTCAAGGAAAATTGATACCTTCAAATTTTCCTTAAAACTTTT
Found at i:10988462 original size:122 final size:120
Alignment explanation
Indices: 10988271--10988489 Score: 314
Period size: 122 Copynumber: 1.8 Consensus size: 120
10988261 TTCAACTTTA
*
10988271 AGGAAAATTGATACATTCAACTTTTCCCTAAAGTATTTTGAAATTTTCATTTTTAAGGAAAATTA
1 AGGAAAATTGATACATTCAACTTTTCCCTAAAGTATTTTGAAATTTTCATTTTCAAGGAAAATTA
*
10988336 ATACTTTCAACTTTTCCTTAAA-ATATTTTTCTTTTAGATTTTTTTTTATTTTTT
66 ATACTTTCAAATTTTCCTTAAAGATATTTTTCTTTTAGATTTTTTTTTATTTTTT
* * * * * *
10988390 AGGAAAATTGATACCTTCAACTTTTCCTTAAAACTTTTTTTTGAAGTTTTTATTTTCAAGGAAAA
1 AGGAAAATTGATACATTCAACTTTTCCCT-AAA--GTATTTTGAAATTTTCATTTTCAAGGAAAA
*
10988455 TTGATACTTTCAAATTTTCCTTAAAGTATATTTTT
63 TTAATACTTTCAAATTTTCCTTAAAG-ATATTTTT
10988490 TTGAAATTTG
Statistics
Matches: 86, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
119 27 0.31
120 3 0.03
122 48 0.56
124 8 0.09
ACGTcount: A:0.32, C:0.11, G:0.08, T:0.49
Consensus pattern (120 bp):
AGGAAAATTGATACATTCAACTTTTCCCTAAAGTATTTTGAAATTTTCATTTTCAAGGAAAATTA
ATACTTTCAAATTTTCCTTAAAGATATTTTTCTTTTAGATTTTTTTTTATTTTTT
Found at i:10988555 original size:56 final size:57
Alignment explanation
Indices: 10988390--10988608 Score: 264
Period size: 56 Copynumber: 3.8 Consensus size: 57
10988380 TTTATTTTTT
* * * *
10988390 AGGAAAATTGATACCTTCAACTTTTCCTTAAA--ACTTTTTTTTGAAGTTTTTATTTTCA
1 AGGAAAATTGATACTTTCAAATTTTCCTTAAAGTA-TTTTTTTTGAA--TTTGATCTTCA
10988448 AGGAAAATTGATACTTTCAAATTTTCCTTAAAGTATATTTTTTTGAAATTTGATCTTCA
1 AGGAAAATTGATACTTTCAAATTTTCCTTAAAGTAT-TTTTTTTG-AATTTGATCTTCA
* * * *
10988507 AGGAAATTTGATACTTTCAAGTTTTTCTTAAAGTATTTTTTTT-AATTTGATCTTTA
1 AGGAAAATTGATACTTTCAAATTTTCCTTAAAGTATTTTTTTTGAATTTGATCTTCA
* * * *
10988563 AGGAAAATTGATACTTTTAATTTTTTCTAAAAGTATTTTTTTTGAA
1 AGGAAAATTGATACTTTCAAATTTTCCTTAAAGTATTTTTTTTGAA
10988609 AATTTTTATT
Statistics
Matches: 144, Mismatches: 12, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
56 51 0.35
57 2 0.01
58 37 0.26
59 43 0.30
60 9 0.06
61 2 0.01
ACGTcount: A:0.32, C:0.09, G:0.10, T:0.49
Consensus pattern (57 bp):
AGGAAAATTGATACTTTCAAATTTTCCTTAAAGTATTTTTTTTGAATTTGATCTTCA
Found at i:10988613 original size:115 final size:116
Alignment explanation
Indices: 10988149--10988609 Score: 334
Period size: 114 Copynumber: 3.9 Consensus size: 116
10988139 CATGTGTTTA
* * * * * * * *
10988149 TTCAAGGAAAATTAATACTTTCAACTTTTTCTCAAAAAGCATCTTTTAT-AATTTTTATTTTCAA
1 TTCAAGGAAAATTGATACCTTCAACTTTTCCT-TAAAA-C-TTTTTTTTGAAGTTTGATTTTCAA
* * * * * *
10988213 GAAAAATTGATACTCTCAACTTTTCCTCAAAA-AATA-TTTTTTGAAAATTTCAAC
63 GGAAAATTGATACTTTCAAATTTTCCT-AAAAGTATATTTTTTTG-AAATTTGATC
* * * * * * * *
10988267 TTTAAGGAAAATTGATACATTCAACTTTTCCCT-AAA--GTATTTTGAAATTTTCATTTTTAAGG
1 TTCAAGGAAAATTGATACCTTCAACTTTTCCTTAAAACTTTTTTTTG-AAGTTTGATTTTCAAGG
* * * ** * *
10988329 AAAATTAATACTTTCAACTTTTCCTTAAAA-TATTTTTCTTTTAGATTTTTTTTTATT
65 AAAATTGATACTTTCAAATTTTCC-TAAAAGTATATTT-TTTT-GA---AATTTGATC
** *
10988386 TTTTAGGAAAATTGATACCTTCAACTTTTCCTTAAAACTTTTTTTTGAAGTTTTTATTTTCAAGG
1 TTCAAGGAAAATTGATACCTTCAACTTTTCCTTAAAACTTTTTTTTGAAG-TTTGATTTTCAAGG
*
10988451 AAAATTGATACTTTCAAATTTTCCTTAAAGTATATTTTTTTGAAATTTGATC
65 AAAATTGATACTTTCAAATTTTCCTAAAAGTATATTTTTTTGAAATTTGATC
* * * *
10988503 TTCAAGGAAATTTGATACTTTCAAGTTTTTCTTAAAGTA-TTTTTTTT-AA-TTTGATCTTT-AA
1 TTCAAGGAAAATTGATACCTTCAACTTTTCCTTAAA--ACTTTTTTTTGAAGTTTGAT-TTTCAA
* * *
10988564 GGAAAATTGATACTTTTAATTTTTTCTAAAAGTAT-TTTTTTTGAAA
63 GGAAAATTGATACTTTCAAATTTTCCTAAAAGTATATTTTTTTGAAA
10988610 ATTTTTATTT
Statistics
Matches: 278, Mismatches: 48, Indels: 38
0.76 0.13 0.10
Matches are distributed among these distances:
112 4 0.01
114 53 0.19
115 41 0.15
116 11 0.04
117 38 0.14
118 35 0.13
119 35 0.13
120 5 0.02
121 10 0.04
122 46 0.17
ACGTcount: A:0.33, C:0.11, G:0.08, T:0.48
Consensus pattern (116 bp):
TTCAAGGAAAATTGATACCTTCAACTTTTCCTTAAAACTTTTTTTTGAAGTTTGATTTTCAAGGA
AAATTGATACTTTCAAATTTTCCTAAAAGTATATTTTTTTGAAATTTGATC
Found at i:10989947 original size:85 final size:86
Alignment explanation
Indices: 10989778--10990179 Score: 358
Period size: 85 Copynumber: 4.7 Consensus size: 86
10989768 AAAATGGGAT
* * *
10989778 AACTAAAAGATGGATCTGGCGTAGGTCGAAATCCAAAAC-AAATGA-CTTAGATGGAA-TCGAAG
1 AACTGAAAGA-GGATCTGGCATAGGTCGAAATCCAAAACAAAATGACCTGAGATGGAACT-GAAG
* *
10989840 TCTAAGATAAGTAACTTAGACTG
64 TCTAAAATAAGTAACTTGGACTG
* * * * * *
10989863 AACTGAAAAAAGATCTGGCATAGGCCGAAATCCAAAATAAAATGACCTGA-ATGGAACTGAGGTT
1 AACTGAAAGAGGATCTGGCATAGGTCGAAATCCAAAACAAAATGACCTGAGATGGAACTGAAGTC
10989927 TAAAATAACG-AACTTGGACTG
66 TAAAATAA-GTAACTTGGACTG
* * **
10989948 AACT-AAAGGAGGATCTAGCATAGGTTGAAATCCAAAACAAAATGACCT-AGATGGAACCAAAGT
1 AACTGAAA-GAGGATCTGGCATAGGTCGAAATCCAAAACAAAATGACCTGAGATGGAACTGAAGT
* *
10990011 GTAAAATAAGTAACTTGGATTG
65 CTAAAATAAGTAACTTGGACTG
* * * *** *
10990033 AA-TCGAATGAGGATTTGGCATAAGTCGAAAT-CAAAACAAAATGACCTG-GAAAAAACTCAAGT
1 AACT-GAAAGAGGATCTGGCATAGGTCGAAATCCAAAACAAAATGACCTGAGATGGAACTGAAGT
* * *
10990095 CTGAAATAAATAACTTAGACTG
65 CTAAAATAAGTAACTTGGACTG
* * ** * * * * *
10990117 AACTGAATGAGGAACTAACATACGTCGAAATCCCAAACAAGATGACCT-AGATTGAACAGAAGT
1 AACTGAAAGAGGATCTGGCATAGGTCGAAATCCAAAACAAAATGACCTGAGATGGAACTGAAGT
10990180 TCGACTTTAC
Statistics
Matches: 255, Mismatches: 49, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
84 96 0.38
85 152 0.60
86 7 0.03
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (86 bp):
AACTGAAAGAGGATCTGGCATAGGTCGAAATCCAAAACAAAATGACCTGAGATGGAACTGAAGTC
TAAAATAAGTAACTTGGACTG
Found at i:10990149 original size:169 final size:170
Alignment explanation
Indices: 10989802--10990173 Score: 410
Period size: 169 Copynumber: 2.2 Consensus size: 170
10989792 TCTGGCGTAG
* * * *
10989802 GTCGAAATCCAAAAC-AAATGACTTAGATGGAATCGAAGTCTAAGATAAGTAACTTAGACTGAAC
1 GTCGAAATCCAAAACAAAATGACCTAGATGGAACCAAAGTCTAAAATAAGTAACTTAGACTGAAC
* * ** * * *
10989866 TGAAAAAAGATCTGGCATAGGCCGAAATCCAAAATAAAATGACCTGAATGGAACTGAGGTTTAAA
66 TGAAAAAAGATCTGGCATAAGCCGAAATCCAAAACAAAATGACCTGAATAAAACTCAAGTCTAAA
* * * * *
10989931 ATAACGAACTTGGACTGAACTAAAGGAGGATCTAGCATAG
131 ATAAAGAACTTAGACTGAACTAAAGGAGGAACTAACATAC
* * * *
10989971 GTTGAAATCCAAAACAAAATGACCTAGATGGAACCAAAGTGTAAAATAAGTAACTTGGATTGAA-
1 GTCGAAATCCAAAACAAAATGACCTAGATGGAACCAAAGTCTAAAATAAGTAACTTAGACTGAAC
** * * * *
10990035 TCGAATGAGGATTTGGCATAAGTCGAAAT-CAAAACAAAATGACCTGGAA-AAAACTCAAGTCTG
66 T-GAAAAAAGATCTGGCATAAGCCGAAATCCAAAACAAAATGACCT-GAATAAAACTCAAGTCTA
* * *
10990098 AAATAAATAACTTAGACTGAACTGAATGAGGAACTAACATAC
129 AAATAAAGAACTTAGACTGAACTAAAGGAGGAACTAACATAC
* * *
10990140 GTCGAAATCCCAAACAAGATGACCTAGATTGAAC
1 GTCGAAATCCAAAACAAAATGACCTAGATGGAAC
10990174 AGAAGTTCGA
Statistics
Matches: 167, Mismatches: 33, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
169 102 0.61
170 65 0.39
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (170 bp):
GTCGAAATCCAAAACAAAATGACCTAGATGGAACCAAAGTCTAAAATAAGTAACTTAGACTGAAC
TGAAAAAAGATCTGGCATAAGCCGAAATCCAAAACAAAATGACCTGAATAAAACTCAAGTCTAAA
ATAAAGAACTTAGACTGAACTAAAGGAGGAACTAACATAC
Found at i:10990257 original size:14 final size:14
Alignment explanation
Indices: 10990238--10990267 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10990228 TTGAAGCACT
10990238 TAAAAAATTCATAA
1 TAAAAAATTCATAA
10990252 TAAAAAATTCATAA
1 TAAAAAATTCATAA
10990266 TA
1 TA
10990268 CAAGTTGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAAATTCATAA
Found at i:10990334 original size:15 final size:15
Alignment explanation
Indices: 10990314--10990344 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10990304 AAAAAATCAC
10990314 AAGTTTGAAATTCAA
1 AAGTTTGAAATTCAA
*
10990329 AAGTTTGCAATTCAA
1 AAGTTTGAAATTCAA
10990344 A
1 A
10990345 GATTCACAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.10, G:0.13, T:0.32
Consensus pattern (15 bp):
AAGTTTGAAATTCAA
Found at i:10990495 original size:34 final size:34
Alignment explanation
Indices: 10990454--10990574 Score: 179
Period size: 34 Copynumber: 3.6 Consensus size: 34
10990444 GAAGATTTGC
** * * * *
10990454 AAAAATTAGAGATTTGTAAGATTTTTAGATTCGT
1 AAAAATTAGAGATTCATAAAATCTTCAGATTCAT
*
10990488 AAGAATTAGAGATTCATAAAATCTTCAGATTCAT
1 AAAAATTAGAGATTCATAAAATCTTCAGATTCAT
10990522 AAAAATTAGAGATTCATAAAATCTTCAGATTCAT
1 AAAAATTAGAGATTCATAAAATCTTCAGATTCAT
10990556 AAAAATTAGAGATTCATAA
1 AAAAATTAGAGATTCATAA
10990575 GATTTGGATT
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 79 1.00
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (34 bp):
AAAAATTAGAGATTCATAAAATCTTCAGATTCAT
Found at i:10990500 original size:17 final size:17
Alignment explanation
Indices: 10990403--10990602 Score: 88
Period size: 17 Copynumber: 11.9 Consensus size: 17
10990393 ACAGATTAAC
*
10990403 AAGAATTAGAGATTCGC
1 AAGAATTAGAGATTCGT
* * * *
10990420 AATAATT-GAAAATTAGC
1 AAGAATTAG-AGATTCGT
* *
10990437 AAGAATT-GAAGATTTGC
1 AAGAATTAG-AGATTCGT
* *
10990454 AAAAATTAGAGATTTGT
1 AAGAATTAGAGATTCGT
* **
10990471 AAGATTTTTAGATTCGT
1 AAGAATTAGAGATTCGT
*
10990488 AAGAATTAGAGATTCAT
1 AAGAATTAGAGATTCGT
** *
10990505 AA-AATCTTCAGATTCAT
1 AAGAAT-TAGAGATTCGT
* *
10990522 AAAAATTAGAGATTCAT
1 AAGAATTAGAGATTCGT
** *
10990539 AA-AATCTTCAGATTCAT
1 AAGAAT-TAGAGATTCGT
* *
10990556 AAAAATTAGAGATTCAT
1 AAGAATTAGAGATTCGT
* *
10990573 AAG-ATTTG-GATTCGC
1 AAGAATTAGAGATTCGT
*
10990588 AAGAATTGGAGATTC
1 AAGAATTAGAGATTC
10990603 ACAAGATTTG
Statistics
Matches: 145, Mismatches: 30, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
15 8 0.06
16 15 0.10
17 115 0.79
18 7 0.05
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.32
Consensus pattern (17 bp):
AAGAATTAGAGATTCGT
Found at i:10990535 original size:51 final size:50
Alignment explanation
Indices: 10990480--10990603 Score: 119
Period size: 51 Copynumber: 2.5 Consensus size: 50
10990470 TAAGATTTTT
*
10990480 AGATTCGTAAGAATTAGAGATTCAT-AAAATCTTCAGATTCATAAAAATTAG
1 AGATTCGTAAGAATTAGAGATTCATAAAAAT-TACAGATTCAT-AAAATTAG
* ** * * *
10990531 AGATTCATAA-AATCTTCAGATTCATAAAAATTAGAGATTCATAAGATTTG
1 AGATTCGTAAGAAT-TAGAGATTCATAAAAATTACAGATTCATAAAATTAG
* *
10990581 -GATTCGCAAGAATTGGAGATTCA
1 AGATTCGTAAGAATTAGAGATTCA
10990604 CAAGATTTGG
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
49 15 0.25
50 12 0.20
51 27 0.46
52 5 0.08
ACGTcount: A:0.43, C:0.10, G:0.15, T:0.31
Consensus pattern (50 bp):
AGATTCGTAAGAATTAGAGATTCATAAAAATTACAGATTCATAAAATTAG
Found at i:10990591 original size:15 final size:15
Alignment explanation
Indices: 10990566--10990616 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
10990556 AAAAATTAGA
*
10990566 GATTCATAAGATTTG
1 GATTCACAAGATTTG
* *
10990581 GATTCGCAAGAATTGG
1 GATTCACAAG-ATTTG
10990597 AGATTCACAAGATTTG
1 -GATTCACAAGATTTG
10990613 GATT
1 GATT
10990617 GGAGATTCGT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 12 0.41
16 8 0.28
17 9 0.31
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (15 bp):
GATTCACAAGATTTG
Found at i:10990607 original size:17 final size:17
Alignment explanation
Indices: 10990548--10990614 Score: 57
Period size: 17 Copynumber: 4.1 Consensus size: 17
10990538 TAAAATCTTC
* * *
10990548 AGATTCATAAAAATTAG
1 AGATTCACAAGAATTGG
* *
10990565 AGATTCATAAG-ATTTG
1 AGATTCACAAGAATTGG
*
10990581 -GATTCGCAAGAATTGG
1 AGATTCACAAGAATTGG
*
10990597 AGATTCACAAGATTTGG
1 AGATTCACAAGAATTGG
10990614 A
1 A
10990615 TTGGAGATTC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.20
16 8 0.20
17 25 0.61
ACGTcount: A:0.40, C:0.09, G:0.21, T:0.30
Consensus pattern (17 bp):
AGATTCACAAGAATTGG
Found at i:10990722 original size:17 final size:17
Alignment explanation
Indices: 10990687--10990724 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
10990677 AAGATTTGTC
*
10990687 GATTCACAAGAATTGAA
1 GATTCACAAGAATTAAA
10990704 GATTCACAA-AATTCAAA
1 GATTCACAAGAATT-AAA
10990721 GATT
1 GATT
10990725 TCTTTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.26
Consensus pattern (17 bp):
GATTCACAAGAATTAAA
Found at i:10992030 original size:8 final size:8
Alignment explanation
Indices: 10992019--10992065 Score: 53
Period size: 8 Copynumber: 6.0 Consensus size: 8
10992009 TTTCTCTTTT
10992019 TTTTTTCA
1 TTTTTTCA
*
10992027 TTTTTTTA
1 TTTTTTCA
10992035 TTTTTT-A
1 TTTTTTCA
10992042 CTTTTTT-A
1 -TTTTTTCA
*
10992050 CTTTTTCA
1 TTTTTTCA
10992058 TTTTTTCA
1 TTTTTTCA
10992066 CTTCATCCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
7 6 0.18
8 28 0.82
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTTTTCA
Found at i:10992038 original size:15 final size:15
Alignment explanation
Indices: 10992015--10992063 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
10992005 TTCTTTTCTC
10992015 TTTTT-TTTTTCATT
1 TTTTTATTTTTCATT
* *
10992029 TTTTTATTTTTTACT
1 TTTTTATTTTTCATT
10992044 TTTTTACTTTTTCATT
1 TTTTTA-TTTTTCATT
10992060 TTTT
1 TTTT
10992064 CACTTCATCC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 5 0.17
15 13 0.45
16 11 0.38
ACGTcount: A:0.10, C:0.08, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTATTTTTCATT
Found at i:10992068 original size:16 final size:15
Alignment explanation
Indices: 10992020--10992068 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
10992010 TTCTCTTTTT
10992020 TTTTTCATTTTTTTA-
1 TTTTTCA-TTTTTTAC
*
10992035 TTTTTTACTTTTTTAC
1 TTTTTCA-TTTTTTAC
10992051 TTTTTCATTTTTTCAC
1 TTTTTCATTTTTT-AC
10992067 TT
1 TT
10992069 CATCCCTCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
15 19 0.66
16 10 0.34
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTCATTTTTTAC
Found at i:10996172 original size:59 final size:58
Alignment explanation
Indices: 10996010--10996517 Score: 421
Period size: 58 Copynumber: 8.7 Consensus size: 58
10996000 CATGTGTTTA
* * * * ** *
10996010 TTCAAGGAAAATTGATACTCTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTCAACT
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATTTTTTTTG-AAATTTTGATT
* *
10996069 TT-AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTTTTGAAATTTTCATT
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCT--TAAAA-ATTTTTTTTGAAATTTTGATT
* * * * *
10996129 TTTAAGAAAAATTGATACTCTCAACTTTTCCTT-AAAATGTTTTTTTTAGATTGTTTATT
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAT-TTTTTTTGAAATT-TTGATT
** * * *
10996188 TTTTAGGAAAATTGATACCTTT-AACTTTTCCTTAAAACA-TTTTTTTAAAATTTTTATT
1 TTCAAGAAAAATTGATA-CTTTCAACTTTTCCTTAAAA-ATTTTTTTTGAAATTTTGATT
* * * *
10996246 TTCAAGGAAACTTGATACTTTCAACTTTTCCTTAAAGTATATTTTTTTGAAA-TTTGATC
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAA-AAT-TTTTTTTGAAATTTTGATT
* * * * * *
10996305 TTCAAGGAAAATTAATACTTTCAACTTTTTCTTAAAGTATATTTTTTGAAA-TTTGATC
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAA-AATTTTTTTTGAAATTTTGATT
* * * * * *
10996363 TTCAAGGAAATTTGATACTTTTAACTTTTTCTT-AAAGTATTTTTTTGAAA-TTTGATA
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAAT-TTTTTTTGAAATTTTGATT
* * *
10996420 TTCAA-AGAAAATTGATACTTTCAATTTTTCCTTAAAAGTATTTTTTT-AAAATTTGTATT
1 TTCAAGA-AAAATTGATACTTTCAACTTTTCCTTAAAAAT-TTTTTTTGAAATTTTG-ATT
* *
10996479 TTTAAGAAAAATTGATTCTTT-AACCTTTT--TTAAAAATTT
1 TTCAAGAAAAATTGATACTTTCAA-CTTTTCCTTAAAAATTT
10996518 GAAATTATTT
Statistics
Matches: 384, Mismatches: 45, Indels: 43
0.81 0.10 0.09
Matches are distributed among these distances:
56 3 0.01
57 61 0.16
58 142 0.37
59 109 0.28
60 31 0.08
61 38 0.10
ACGTcount: A:0.34, C:0.11, G:0.07, T:0.48
Consensus pattern (58 bp):
TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAAATTTTTTTTGAAATTTTGATT
Found at i:10996270 original size:117 final size:116
Alignment explanation
Indices: 10996010--10996507 Score: 470
Period size: 117 Copynumber: 4.2 Consensus size: 116
10996000 CATGTGTTTA
* * * * * * * *
10996010 TTCAAGGAAAATTGATACTCTCAACTTTTCCTCAAA-AATATTTTTTGAAAATTTCA-ACTTTAA
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGTAT-TTTTTTTAGAATTTGATA-TTCAA
* * * *
10996073 GAAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTTTTGAAATTTTCATT
64 GGAAAATTGATACTTTCAACTTTTCCT--TAAAATA-TTTTTTTAAAATTTTTATT
* * * * * * * **
10996129 TTTAAGAAAAATTGATACTCTCAACTTTTCCTTAAAATGTTTTTTTTAGATTGTTTATTTTTTAG
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGTATTTTTTTTAGAAT-TTGATATTCAAG
*
10996194 GAAAATTGATACCTTT-AACTTTTCCTTAAAACATTTTTTTAAAATTTTTATT
65 GAAAATTGATA-CTTTCAACTTTTCCTTAAAATATTTTTTTAAAATTTTTATT
* * *
10996246 TTCAAGGAAACTTGATACTTTCAACTTTTCCTTAAAGTATATTTTTTT-GAAATTTGATCTTCAA
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGTAT-TTTTTTTAG-AATTTGATATTCAA
* * * * * *
10996310 GGAAAATTAATACTTTCAACTTTTTCTTAAAGTATATTTTTTGAAA-TTTGATC
64 GGAAAATTGATACTTTCAACTTTTCCTTAAAATAT-TTTTTTAAAATTTTTATT
* * * * * *
10996363 TTCAAGGAAATTTGATACTTTTAACTTTTTCTTAAAGTATTTTTTTGA-AATTTGATATTCAAAG
1 TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGTATTTTTTTTAGAATTTGATATTCAAGG
* *
10996427 AAAATTGATACTTTCAATTTTTCCTTAAAAGTATTTTTTTAAAATTTGTATT
66 AAAATTGATACTTTCAACTTTTCCTTAAAA-TATTTTTTTAAAATTTTTATT
* *
10996479 TTTAAGAAAAATTGATTCTTT-AACCTTTT
1 TTCAAGAAAAATTGATACTTTCAA-CTTTT
10996508 TTAAAAATTT
Statistics
Matches: 315, Mismatches: 52, Indels: 27
0.80 0.13 0.07
Matches are distributed among these distances:
115 51 0.16
116 39 0.12
117 127 0.40
118 23 0.07
119 42 0.13
120 29 0.09
121 4 0.01
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.48
Consensus pattern (116 bp):
TTCAAGAAAAATTGATACTTTCAACTTTTCCTTAAAGTATTTTTTTTAGAATTTGATATTCAAGG
AAAATTGATACTTTCAACTTTTCCTTAAAATATTTTTTTAAAATTTTTATT
Found at i:10998150 original size:2 final size:2
Alignment explanation
Indices: 10998143--10998167 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10998133 TATTAGTATG
10998143 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10998168 TAATAAGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10998723 original size:119 final size:119
Alignment explanation
Indices: 10998512--10998749 Score: 476
Period size: 119 Copynumber: 2.0 Consensus size: 119
10998502 TTACTAATCC
10998512 TGGTAACCAAGTTTGCAATTTAGATCATAAGATCATTATACTATAAAATATAATGTTTCACATTA
1 TGGTAACCAAGTTTGCAATTTAGATCATAAGATCATTATACTATAAAATATAATGTTTCACATTA
10998577 ATTACAGCATATTCTCTTGGCTATATATTGAGTTGTCCCATCATGCAATATAAA
66 ATTACAGCATATTCTCTTGGCTATATATTGAGTTGTCCCATCATGCAATATAAA
10998631 TGGTAACCAAGTTTGCAATTTAGATCATAAGATCATTATACTATAAAATATAATGTTTCACATTA
1 TGGTAACCAAGTTTGCAATTTAGATCATAAGATCATTATACTATAAAATATAATGTTTCACATTA
10998696 ATTACAGCATATTCTCTTGGCTATATATTGAGTTGTCCCATCATGCAATATAAA
66 ATTACAGCATATTCTCTTGGCTATATATTGAGTTGTCCCATCATGCAATATAAA
10998750 ATGATTATTT
Statistics
Matches: 119, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
119 119 1.00
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (119 bp):
TGGTAACCAAGTTTGCAATTTAGATCATAAGATCATTATACTATAAAATATAATGTTTCACATTA
ATTACAGCATATTCTCTTGGCTATATATTGAGTTGTCCCATCATGCAATATAAA
Found at i:10999230 original size:10 final size:10
Alignment explanation
Indices: 10999179--10999230 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
10999169 CATGATATGG
10999179 CTAAGTTTGA
1 CTAAGTTTGA
* *
10999189 -TTAGATTGA
1 CTAAGTTTGA
10999198 CTCAAGTTTGA
1 CT-AAGTTTGA
*
10999209 CCAAGTTTGA
1 CTAAGTTTGA
*
10999219 CTAATTTTGA
1 CTAAGTTTGA
10999229 CT
1 CT
10999231 TTGACAAAGA
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
9 7 0.21
10 19 0.58
11 7 0.21
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.40
Consensus pattern (10 bp):
CTAAGTTTGA
Found at i:10999900 original size:18 final size:18
Alignment explanation
Indices: 10999855--10999903 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
10999845 ATTATCGTTA
*
10999855 ATATAGTATAGT-GTGTT
1 ATATAGTATAGTAGTATT
* *
10999872 ATAATAATATAGTATTATT
1 AT-ATAGTATAGTAGTATT
10999891 ATATAGTATAGTA
1 ATATAGTATAGTA
10999904 CATTATATTG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 2 0.08
18 19 0.73
19 5 0.19
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (18 bp):
ATATAGTATAGTAGTATT
Found at i:10999979 original size:3 final size:3
Alignment explanation
Indices: 10999971--11000124 Score: 152
Period size: 3 Copynumber: 51.7 Consensus size: 3
10999961 GTATATTTTG
* * * *
10999971 TTA TTA TTA TTA GTA TTA TTA TTA -TA TTA CTC TTA TTA -TA TTA TATC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
11000018 TCTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * *
11000063 TTA TTA TTG TTG TTG TTG TTG TTG TTG TTA TTA TTA TTA TTA TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
11000111 TTA TTA ATA TTA TT
1 TTA TTA TTA TTA TT
11000125 TTTTGTGTTT
Statistics
Matches: 132, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
2 6 0.05
3 122 0.92
4 4 0.03
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:11012770 original size:113 final size:113
Alignment explanation
Indices: 11012592--11012812 Score: 261
Period size: 113 Copynumber: 2.0 Consensus size: 113
11012582 CTGACTCGCA
* * * ****
11012592 GCATCATCCTGGTATTCATTTATGACCTTGACTCGATCTTGGTCATTTTTAGACTCATGGTATCA
1 GCATCATCCTGGTATTCATTTATAACCTTGACTCGATCTTGGTCACTTTCAGACTCACAACATCA
11012657 TCATAGCCAT-ACGATCTC-AGCTCAGG-CAAATCATTTCTAGACCTACG
66 TCATAGCCATCA-GATCTCGA-CTCAGGCCAAATCATTTCTAGACCTACG
* *
11012704 GCATCATTCC-GGTCATTCATTTATAACCTTGACTCGATCTTGGTCGCTTTCAGACTCGCAACAT
1 GCATCA-TCCTGGT-ATTCATTTATAACCTTGACTCGATCTTGGTCACTTTCAGACTCACAACAT
* * * *
11012768 CATCCTAGTCATCAGATCTCGACTTAGGCCAGATCATTTCTAGAC
64 CATCATAGCCATCAGATCTCGACTCAGGCCAAATCATTTCTAGAC
11012813 TCGCAACATC
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
112 9 0.10
113 65 0.71
114 17 0.19
ACGTcount: A:0.24, C:0.27, G:0.16, T:0.33
Consensus pattern (113 bp):
GCATCATCCTGGTATTCATTTATAACCTTGACTCGATCTTGGTCACTTTCAGACTCACAACATCA
TCATAGCCATCAGATCTCGACTCAGGCCAAATCATTTCTAGACCTACG
Found at i:11012832 original size:113 final size:113
Alignment explanation
Indices: 11012491--11012832 Score: 349
Period size: 114 Copynumber: 3.0 Consensus size: 113
11012481 CATCTTGGAT
* * * *
11012491 ATTCATCTATGACCTTGACTCAATCTTGGTCACTTTTAGACTCGTGGCATCATCCCAGTCGTCCA
1 ATTCATTTATGACCTTGACTCGATCTTGGTCACTTTTAGACTCGTGGCATCATCCTAGTCAT-CA
* * *
11012556 -ATCTCGGCTCAGACTAGATCATTTTTCT-GACTCGCAGCATCATCCTGGT-
65 GATCTCGACTCAGGCCAGATCA--TTTCTAGACTCGCAGCATCATCC-GGTC
* * * * *
11012605 ATTCATTTATGACCTTGACTCGATCTTGGTCATTTTTAGACTCATGGTATCATCATAGCCAT-AC
1 ATTCATTTATGACCTTGACTCGATCTTGGTCACTTTTAGACTCGTGGCATCATCCTAGTCATCA-
*
11012669 GATCTC-AGCTCAGG-CAAATCATTTCTAGACCTACG--GCATCATTCCGGTC
65 GATCTCGA-CTCAGGCCAGATCATTTCTAGA-CT-CGCAGCATCA-TCCGGTC
* * * ***
11012718 ATTCATTTATAACCTTGACTCGATCTTGGTCGCTTTCAGACTCGCAACATCATCCTAGTCATCAG
1 ATTCATTTATGACCTTGACTCGATCTTGGTCACTTTTAGACTCGTGGCATCATCCTAGTCATCAG
* * *
11012783 ATCTCGACTTAGGCCAGATCATTTCTAGACTCGCAACATCATCCAGTC
66 ATCTCGACTCAGGCCAGATCATTTCTAGACTCGCAGCATCATCCGGTC
11012831 AT
1 AT
11012833 CTGATCTCAG
Statistics
Matches: 187, Mismatches: 28, Indels: 27
0.77 0.12 0.11
Matches are distributed among these distances:
111 5 0.03
112 14 0.07
113 82 0.44
114 86 0.46
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (113 bp):
ATTCATTTATGACCTTGACTCGATCTTGGTCACTTTTAGACTCGTGGCATCATCCTAGTCATCAG
ATCTCGACTCAGGCCAGATCATTTCTAGACTCGCAGCATCATCCGGTC
Found at i:11012853 original size:53 final size:53
Alignment explanation
Indices: 11012751--11012864 Score: 153
Period size: 53 Copynumber: 2.1 Consensus size: 53
11012741 TCTTGGTCGC
*
11012751 TTTCAGACTCGCAACATCATCCTAGTCATCAGATCTCGACTTAGGCCAGATCA
1 TTTCAGACTCGCAACATCATCCTAGTCATCAGATCTCGACATAGGCCAGATCA
*
11012804 TTTCTAGACTCGCAACATCATCC-AGTCATCTGATCTC-AGCAT-GGTCCAGATCA
1 TTTC-AGACTCGCAACATCATCCTAGTCATCAGATCTCGA-CATAGG-CCAGATCA
11012857 TTTTCAGA
1 -TTTCAGA
11012865 TTCACAGTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 8
0.85 0.03 0.12
Matches are distributed among these distances:
52 3 0.05
53 30 0.55
54 22 0.40
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (53 bp):
TTTCAGACTCGCAACATCATCCTAGTCATCAGATCTCGACATAGGCCAGATCA
Found at i:11013142 original size:3 final size:3
Alignment explanation
Indices: 11013136--11013200 Score: 71
Period size: 3 Copynumber: 21.7 Consensus size: 3
11013126 GTATATTTTT
* * *
11013136 TTA TTA TTA TTA GTA TTA TTA TTA -TA TTA TATC TCTA TTG TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA
11013181 TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TT
11013201 CCTTTTCCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
2 4 0.08
3 44 0.85
4 4 0.08
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:11014088 original size:23 final size:23
Alignment explanation
Indices: 11014062--11014122 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
11014052 CCTTTTCTTT
*
11014062 TTTCACTTTATTTCTTTATTTCA
1 TTTCACTTTATTTATTTATTTCA
* *
11014085 TTTCATTTTATTTATTTATTTTA
1 TTTCACTTTATTTATTTATTTCA
*
11014108 TTT-ACCTTA-TTATTT
1 TTTCACTTTATTTATTT
11014123 TAATTTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 6 0.18
22 4 0.12
23 23 0.70
ACGTcount: A:0.20, C:0.11, G:0.00, T:0.69
Consensus pattern (23 bp):
TTTCACTTTATTTATTTATTTCA
Found at i:11015802 original size:16 final size:15
Alignment explanation
Indices: 11015764--11015802 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
11015754 CATATGTCAT
*
11015764 AAAAAAATTAAAATG
1 AAAAAAATTAAAAAG
*
11015779 ACAAAAATTAAAAAG
1 AAAAAAATTAAAAAG
11015794 AAAATAAAT
1 AAAA-AAAT
11015803 GATAAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (15 bp):
AAAAAAATTAAAAAG
Found at i:11016549 original size:18 final size:18
Alignment explanation
Indices: 11016528--11016563 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
11016518 TAAATAATGT
*
11016528 TAATAATACTAATAAAAA
1 TAATAATACCAATAAAAA
*
11016546 TAATATTACCAATAAAAA
1 TAATAATACCAATAAAAA
11016564 ATAAAAAGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (18 bp):
TAATAATACCAATAAAAA
Found at i:11024094 original size:23 final size:23
Alignment explanation
Indices: 11024068--11024112 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
11024058 ATCCTTTTTT
*
11024068 TTTATTT-TTTTTATTCATTATTC
1 TTTATTTACTTTTATT-ATTATTC
11024091 TTTATTTACTTTTATTATTATT
1 TTTATTTACTTTTATTATTATT
11024113 TTAATTACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (23 bp):
TTTATTTACTTTTATTATTATTC
Found at i:11024361 original size:20 final size:19
Alignment explanation
Indices: 11024310--11024366 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 19
11024300 TGAGGTTTTG
*
11024310 CCTAAGGTTTAGGATTTCA
1 CCTAAGGTTTGGGATTTCA
11024329 CCTAAGGTTTGGGATTTCA
1 CCTAAGGTTTGGGATTTCA
*
11024348 CCTAGAGTTTTGGG-TTTCA
1 CCTA-AGGTTTGGGATTTCA
11024367 TCTATGGCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
19 27 0.77
20 8 0.23
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.39
Consensus pattern (19 bp):
CCTAAGGTTTGGGATTTCA
Found at i:11031198 original size:20 final size:20
Alignment explanation
Indices: 11031173--11031292 Score: 109
Period size: 20 Copynumber: 6.5 Consensus size: 20
11031163 ATTGCACAAT
*
11031173 AATTTCACAATCTCATTAAC
1 AATTTCACAATCTCATCAAC
*
11031193 AATTTCACAATGTCATCAAC
1 AATTTCACAATCTCATCAAC
* *
11031213 AATTTCATAATCTCATCAAT
1 AATTTCACAATCTCATCAAC
11031233 AATTT--C-A----A--AAC
1 AATTTCACAATCTCATCAAC
*
11031244 AATTTTACAATCTCATCAAC
1 AATTTCACAATCTCATCAAC
11031264 AATTT-AGCAA-CTCATCAAC
1 AATTTCA-CAATCTCATCAAC
11031283 AATTTCACAA
1 AATTTCACAA
11031293 CAATTTCACA
Statistics
Matches: 82, Mismatches: 7, Indels: 23
0.73 0.06 0.21
Matches are distributed among these distances:
11 7 0.09
13 2 0.02
14 1 0.01
17 1 0.01
18 1 0.01
19 18 0.22
20 52 0.63
ACGTcount: A:0.42, C:0.23, G:0.02, T:0.33
Consensus pattern (20 bp):
AATTTCACAATCTCATCAAC
Found at i:11031245 original size:51 final size:50
Alignment explanation
Indices: 11031190--11031302 Score: 156
Period size: 51 Copynumber: 2.2 Consensus size: 50
11031180 CAATCTCATT
* * *
11031190 AACAATTTCACAATGTCATCAACAATTTCA-TAATCTCATCAATAATTTCAA
1 AACAATTTCACAATCTCATCAACAATTT-AGCAA-CTCATCAACAATTTCAA
* *
11031241 AACAATTTTACAATCTCATCAACAATTTAGCAACTCATCAACAATTTCAC
1 AACAATTTCACAATCTCATCAACAATTTAGCAACTCATCAACAATTTCAA
11031291 AACAATTTCACA
1 AACAATTTCACA
11031303 CATAATCTGG
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
50 27 0.49
51 28 0.51
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (50 bp):
AACAATTTCACAATCTCATCAACAATTTAGCAACTCATCAACAATTTCAA
Done.