Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 56 of 133
Found at i:11546863 original size:6 final size:6
Alignment explanation
Indices: 11546759--11546875 Score: 51
Period size: 6 Copynumber: 18.3 Consensus size: 6
11546749 AGGGTCAAGA
* * * * *
11546759 TTAGGTT TTAAGGT TTATGT TAAGG- TTAGGT TTGGGC TTAGGGT TAAGGT
1 TTAGG-T TT-AGGT TTAGGT TTAGGT TTAGGT TTAGGT TTA-GGT TTAGGT
* * *
11546809 TAAGGT TTAAGGTT TTAAGG- TTAGTT TTAGGC TTAGGGT TTAAGG- TTAGGT
1 TTAGGT TT-AGG-T TT-AGGT TTAGGT TTAGGT TTA-GGT TT-AGGT TTAGGT
11546860 TTAGGGT TTAAGGT TT
1 TTA-GGT TT-AGGT TT
11546876 TGGCTTCAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 22
0.70 0.12 0.18
Matches are distributed among these distances:
5 9 0.11
6 36 0.42
7 28 0.33
8 12 0.14
ACGTcount: A:0.21, C:0.02, G:0.32, T:0.44
Consensus pattern (6 bp):
TTAGGT
Found at i:11546965 original size:21 final size:20
Alignment explanation
Indices: 11546939--11546980 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
11546929 GGTTTAGGGA
*
11546939 TTGCATGGGGGTTTAGAGGTT
1 TTGCATAGGGGTTT-GAGGTT
*
11546960 TTGCATAGTGGTTTGAGGTT
1 TTGCATAGGGGTTTGAGGTT
11546980 T
1 T
11546981 GGGGTTTTGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.14, C:0.05, G:0.38, T:0.43
Consensus pattern (20 bp):
TTGCATAGGGGTTTGAGGTT
Found at i:11546986 original size:27 final size:26
Alignment explanation
Indices: 11546947--11547006 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 26
11546937 GATTGCATGG
*
11546947 GGGTTTAGAGGTTTTGCATAGTGGTTT
1 GGGTTT-GGGGTTTTGCATAGTGGTTT
11546974 GAGGTTTGGGGTTTTGCATAGTGGTTT
1 G-GGTTTGGGGTTTTGCATAGTGGTTT
11547001 GGGTTT
1 GGGTTT
11547007 CGCATAGGCA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 5 0.16
27 21 0.68
28 5 0.16
ACGTcount: A:0.12, C:0.03, G:0.40, T:0.45
Consensus pattern (26 bp):
GGGTTTGGGGTTTTGCATAGTGGTTT
Found at i:11547006 original size:19 final size:20
Alignment explanation
Indices: 11546976--11547013 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
11546966 AGTGGTTTGA
*
11546976 GGTTTGGGGTTTTGCATAGT
1 GGTTTGGGGTTTCGCATAGT
11546996 GGTTT-GGGTTTCGCATAG
1 GGTTTGGGGTTTCGCATAG
11547014 GCAATGCATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.11, C:0.08, G:0.39, T:0.42
Consensus pattern (20 bp):
GGTTTGGGGTTTCGCATAGT
Found at i:11551447 original size:28 final size:28
Alignment explanation
Indices: 11551395--11551461 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 28
11551385 ATATAAAAAC
* * *
11551395 TAAAAATTTAATGAAGACATATTTATCA
1 TAAAAATATAATGAAGACAAATTTAGCA
*
11551423 TTAAAAATATATTGAAGA-AAATTTAGCA
1 -TAAAAATATAATGAAGACAAATTTAGCA
*
11551451 TAAAAACATAA
1 TAAAAATATAA
11551462 ATATATCTAC
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
27 9 0.28
28 8 0.25
29 15 0.47
ACGTcount: A:0.55, C:0.06, G:0.07, T:0.31
Consensus pattern (28 bp):
TAAAAATATAATGAAGACAAATTTAGCA
Found at i:11552935 original size:24 final size:24
Alignment explanation
Indices: 11552882--11552937 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
11552872 TAAGTTTATG
**
11552882 CATAAATATGAAAACAATTAAGTG
1 CATAAATATGAAAACAATTAAGCA
* *
11552906 CGTAAATATGAAGACAATTAAGCA
1 CATAAATATGAAAACAATTAAGCA
11552930 CATAAATA
1 CATAAATA
11552938 ATCACACCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.54, C:0.11, G:0.12, T:0.23
Consensus pattern (24 bp):
CATAAATATGAAAACAATTAAGCA
Found at i:11559210 original size:13 final size:13
Alignment explanation
Indices: 11559192--11559218 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11559182 CTTCTCAATG
11559192 TCTTTATATATGT
1 TCTTTATATATGT
11559205 TCTTTATATATGT
1 TCTTTATATATGT
11559218 T
1 T
11559219 ATTAATATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (13 bp):
TCTTTATATATGT
Found at i:11561243 original size:478 final size:483
Alignment explanation
Indices: 11560313--11561563 Score: 1250
Period size: 478 Copynumber: 2.6 Consensus size: 483
11560303 TTAAGTGAGA
* * * * * * ** **
11560313 AAGTTGCAATTTATGTTTGTTTAGGACTTTTTGTGT--TGTTAAAGGGTAAAAATGTAATTTTGT
1 AAGTTGCAATTTATGTATATTTAAGACTTTTT-TGTCACGATAAAGGGCAAAAATACAATTTTAC
* * * * * * *
11560376 AATTATATTTTTGTTTTAATAGTTTAA-ATAGTTTCAATACATGATATT-AA-TTGTCTG-AATA
65 AATTATATTTATGTTTTAACAATCTAATA-ACTCT-AATA-ATGATATTAAACTTGTCCGAAATA
* * * * * *
11560437 TTTAAACTTGATTGCCATGATTGATATGCATGAATAAGTTGTGGTTTTTGTTTGTTTAAG-ACTT
127 TTTAAACTTGATTGTCACGCTTGATATGCATGAATAAGTTGTGATTTATGTTTGTTTAAGAATTT
* ** * * * * *
11560501 TTTATGCTGTTAAAAGATAAAAATGCAAATTTGCAGTTAT-TGTTTTGTTTTAATAGTTTAAATA
192 TTTATGCTATTAAAAGGCAAAAATGTAATTTTGCAATTATAT-TTTTATTTTAATAGTTTAGATA
* * * * *
11560565 GGTTAAATACATGATATTAAACTTGTCTGAAAGATTGAACTTAGTTTCCACACTTGATATGCATG
256 GCTCAAATACATGATATTATACTTGTCTGAATGTTTGAACTTAGTTTCCACACTTGATATGCATG
* * **
11560630 AATAAGTTGCGATTTATGCCTATTTAAGACTTTTTTATGCCATTAAAGGGTAAAAATATAAATTT
321 AAAAAGTTGAGATTTAT-CCTATTTAAGACTTTTTTACACCATTAAAGGGTAAAAATATAAATTT
* * * * **
11560695 GCAATTACATTTATATTTTAACATTTAGATAGCTCCAATACATGATATTATACTTATGCAAATTT
385 GCAATTACATTTATATTTTAACATTTAGATAGCTCAAATACATGATATTAAACCTATCCAAAAGT
**
11560760 TTGAACTTGATTGTCATGCTTGATATGCATGAAT
450 TTGAACTTGATTGTCACACTTGATATGCATGAAT
* ** * * *
11560794 AAGTTGCAATTTATGTATGTTTAAGGTTTTTTTTGTGACGATAAAGGGCAAAAATATAATTTTGC
1 AAGTTGCAATTTATGTATATTTAA-GACTTTTTTGTCACGATAAAGGGCAAAAATACAATTTTAC
* * * * * *
11560859 AATTATATTTCTGTTTTAATAGTCT-A-CA-TCT-AT-ATGCTATTAAACTTGTTC-AAATATTT
65 AATTATATTTATGTTTTAACAATCTAATAACTCTAATAATGATATTAAACTTGTCCGAAATATTT
* *
11560918 CAACTTGATTGTCACGCTTGATATGCATGAATAAGTTGTGATCTATGTTTGTTTAAGAATTTTTT
130 AAACTTGATTGTCACGCTTGATATGCATGAATAAGTTGTGATTTATGTTTGTTTAAGAATTTTTT
** *
11560983 ATGCTATTAAAAGGCAAAAATGTAATTTTATAATTATATTTTTATTTTAGTAGTTTAGATAGCTC
195 ATGCTATTAAAAGGCAAAAATGTAATTTTGCAATTATATTTTTATTTTAATAGTTTAGATAGCTC
* * * ** **
11561048 CAATACATGATATTATACTTGT-TCGAATGTTTGAACTTGGTTTTCATGCTTGATATGGGT-AAG
260 AAATACATGATATTATACTTGTCT-GAATGTTTGAACTTAGTTTCCACACTTGATATGCATGAA-
* * * **
11561111 AAAGTTATAGTTTGTAT-CTGTTT-AGAAC-TTTTTACACTGTTAAAGGGTAAAAATAT-AATTT
323 AAAGTT-GAGATT-TATCCTATTTAAG-ACTTTTTTACACCATTAAAGGGTAAAAATATAAATTT
* * * *
11561172 GGAATTATATTTCTATTTTAACAATTTAGATAGCTTAAATACATGATATTAAACCTATCCAAAAG
385 GCAATTACATTTATATTTTAAC-ATTTAGATAGCTCAAATACATGATATTAAACCTATCCAAAAG
11561237 TTTGAACTTGATTGTCACACTTGATATGCATGAAT
449 TTTGAACTTGATTGTCACACTTGATATGCATGAAT
*** * * * *
11561272 AAGTTGTGGTTTATGTCTATTTAAGACTTTTTTGTCCCGTTAAAGGGCAAAAATGCAATTTTACA
1 AAGTTGCAATTTATGTATATTTAAGACTTTTTTGTCACGATAAAGGGCAAAAATACAATTTTACA
* *
11561337 ATTATATTTATGTTTTAACAATTTAAATAACTCTAATACATGATATTAAACTTGTCCGAAA-GTT
66 ATTATATTTATGTTTTAACAATCT-AATAACTCTAATA-ATGATATTAAACTTGTCCGAAATATT
* * * * * * *
11561401 TGAACTTGAATGTCACACTTGATATGCATGAATAAGTTGTGATTTATGTCTATTCAAGACTTTTT
129 TAAACTTGATTGTCACGCTTGATATGCATGAATAAGTTGTGATTTATGTTTGTTTAAGAATTTTT
* * * * * * * *
11561466 TGTG-TTTTTATAGGGAAAAAGTGTAATTTTGCAATTATATTTCTATTTTAACAATTTAGATAGC
194 TATGCTATTAAAAGGCAAAAA-TGTAATTTTGCAATTATATTTTTATTTTAATAGTTTAGATAGC
*
11561530 TCGAATACATGATATTATACTTGTCTGAATGTTT
258 TCAAATACATGATATTATACTTGTCTGAATGTTT
11561564 TGATTGCCAT
Statistics
Matches: 637, Mismatches: 109, Indels: 45
0.81 0.14 0.06
Matches are distributed among these distances:
476 7 0.01
477 79 0.12
478 179 0.28
479 117 0.18
480 7 0.01
481 32 0.05
482 9 0.01
483 57 0.09
484 146 0.23
485 4 0.01
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (483 bp):
AAGTTGCAATTTATGTATATTTAAGACTTTTTTGTCACGATAAAGGGCAAAAATACAATTTTACA
ATTATATTTATGTTTTAACAATCTAATAACTCTAATAATGATATTAAACTTGTCCGAAATATTTA
AACTTGATTGTCACGCTTGATATGCATGAATAAGTTGTGATTTATGTTTGTTTAAGAATTTTTTA
TGCTATTAAAAGGCAAAAATGTAATTTTGCAATTATATTTTTATTTTAATAGTTTAGATAGCTCA
AATACATGATATTATACTTGTCTGAATGTTTGAACTTAGTTTCCACACTTGATATGCATGAAAAA
GTTGAGATTTATCCTATTTAAGACTTTTTTACACCATTAAAGGGTAAAAATATAAATTTGCAATT
ACATTTATATTTTAACATTTAGATAGCTCAAATACATGATATTAAACCTATCCAAAAGTTTGAAC
TTGATTGTCACACTTGATATGCATGAAT
Found at i:11561323 original size:322 final size:322
Alignment explanation
Indices: 11560351--11561554 Score: 1093
Period size: 322 Copynumber: 3.8 Consensus size: 322
11560341 TTTTGTGTTG
* ** * * * * *
11560351 TTAAAGGGTAAAAATGTAATTTTGTAATTATATTTTTGTTTTAATAGTTTAAATAGTTTCAATAC
1 TTAAAGGGCAAAAATGTAATTTTACAATTATATTTATATTTTAACAGTTTAAATAGCTCCAATAC
* * * *
11560416 ATGATATTA-A-TTG-TCTGAATATTTAAACTTGATTGCCATGATTGATATGCATGAATAAGTTG
66 ATGATATTATACTTGTTC-GAATGTTTGAACTTGATTGTCATGCTTGATATGCATGAATAAGTTG
* * * ** * * *
11560478 TGGTTTTTGTTTGTTTA-AGACTTTTTATGCTGTTAAAAGATAAAAATGCA-AATTTGCAGTTAT
130 TAGTTTATGTATGTTTAGA-ACTTTTTACACTGTTAAAGGGTAAAAAT--ATAATTTGCAATTAT
* * ** *
11560541 -TGTTTTGTTTTAATAGTTTAAATAGGTTAAATACATGATATTAAACTTGTCTGAAAGATTGAAC
192 AT-TTCTGTTTTAATAGTTTAAATAGCTTAAATACATGATATTAAACTTGTCCAAAAGTTTGAAC
* *
11560605 TT-AGTT-TCCACACTTGATATGCATGAATAAGTTGCGATTTATGCCTATTTAAGACTTTTTTAT
256 TTGA-TTGT-CACACTTGATATGCATGAATAAGTTGTGATTTATGTCTATTTAAGACTTTTTTAT
11560668 GCCA
319 GCCA
* * * * * *
11560672 TTAAAGGGTAAAAATATAAATTTGCAATTACATTTATATTTTAACA-TTTAGATAGCTCCAATAC
1 TTAAAGGGCAAAAATGTAATTTTACAATTATATTTATATTTTAACAGTTTAAATAGCTCCAATAC
* * * * *
11560736 ATGATATTATACTTATGCAAATTTTTGAACTTGATTGTCATGCTTGATATGCATGAATAAGTTGC
66 ATGATATTATACTTGTTCGAATGTTTGAACTTGATTGTCATGCTTGATATGCATGAATAAGTTGT
* *** ** * *
11560801 AATTTATGTATGTTTAAGGTTTTTTTTGTGAC-GATAAAGGGCAAAAATATAATTTTGCAATTAT
131 AGTTTATGTATGTTT-A-GAACTTTTT-ACACTGTTAAAGGGTAAAAATATAA-TTTGCAATTAT
* * * * *
11560865 ATTTCTGTTTTAATAGTCTACAT--C-T--AT--ATGCTATTAAACTTGTTCAAATA-TTTCAAC
192 ATTTCTGTTTTAATAGTTTAAATAGCTTAAATACATGATATTAAACTTGTCCAAA-AGTTTGAAC
* * * * *
11560922 TTGATTGTCACGCTTGATATGCATGAATAAGTTGTGATCTATGTTTGTTTAAGAATTTTTTATGC
256 TTGATTGTCACACTTGATATGCATGAATAAGTTGTGATTTATGTCTATTTAAGACTTTTTTATGC
*
11560987 TA
321 CA
* * * ** *
11560989 TTAAAAGGCAAAAATGTAATTTTATAATTATATTTTTATTTTAGTAGTTTAGATAGCTCCAATAC
1 TTAAAGGGCAAAAATGTAATTTTACAATTATATTTATATTTTAACAGTTTAAATAGCTCCAATAC
* * ** * *
11561054 ATGATATTATACTTGTTCGAATGTTTGAACTTGGTTTTCATGCTTGATATGGGT-AAGAAAGTTA
66 ATGATATTATACTTGTTCGAATGTTTGAACTTGATTGTCATGCTTGATATGCATGAA-TAAGTTG
* * * *
11561118 TAGTTTGTATCTGTTTAGAACTTTTTACACTGTTAAAGGGTAAAAATATAATTTGGAATTATATT
130 TAGTTTATGTATGTTTAGAACTTTTTACACTGTTAAAGGGTAAAAATATAATTTGCAATTATATT
* * * * * *
11561183 TCTATTTTAACAATTTAGATAGCTTAAATACATGATATTAAACCTATCCAAAAGTTTGAACTTGA
195 TCTGTTTTAATAGTTTAAATAGCTTAAATACATGATATTAAACTTGTCCAAAAGTTTGAACTTGA
* * * *
11561248 TTGTCACACTTGATATGCATGAATAAGTTGTGGTTTATGTCTATTTAAGACTTTTTTGTCCCG
260 TTGTCACACTTGATATGCATGAATAAGTTGTGATTTATGTCTATTTAAGACTTTTTTATGCCA
* * * * *
11561311 TTAAAGGGCAAAAATGCAATTTTACAATTATATTTATGTTTTAACAATTTAAATAACTCTAATAC
1 TTAAAGGGCAAAAATGTAATTTTACAATTATATTTATATTTTAACAGTTTAAATAGCTCCAATAC
* * * * **
11561376 ATGATATTAAACTTGTCCGAAAGTTTGAACTTGAATGTCACACTTGATATGCATGAATAAGTTGT
66 ATGATATTATACTTGTTCGAATGTTTGAACTTGATTGTCATGCTTGATATGCATGAATAAGTTGT
* * * **** * * *
11561441 -GATTTATGTCTATTCA-AGACTTTTTTGTGTTTTTATAGGG-AAAAAGTGTAATTTTGCAATTA
131 AG-TTTATGTATGTTTAGA-AC-TTTTTACACTGTTAAAGGGTAAAAA-TATAA-TTTGCAATTA
* * * * ** *
11561503 TATTTCTATTTTAACAATTTAGATAGCTCGAATACATGATATTATACTTGTC
191 TATTTCTGTTTTAATAGTTTAAATAGCTTAAATACATGATATTAAACTTGTC
11561555 TGAATGTTTT
Statistics
Matches: 709, Mismatches: 144, Indels: 57
0.78 0.16 0.06
Matches are distributed among these distances:
315 30 0.04
316 24 0.03
317 117 0.17
318 84 0.12
319 2 0.00
320 26 0.04
321 44 0.06
322 256 0.36
323 23 0.03
324 101 0.14
325 2 0.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.43
Consensus pattern (322 bp):
TTAAAGGGCAAAAATGTAATTTTACAATTATATTTATATTTTAACAGTTTAAATAGCTCCAATAC
ATGATATTATACTTGTTCGAATGTTTGAACTTGATTGTCATGCTTGATATGCATGAATAAGTTGT
AGTTTATGTATGTTTAGAACTTTTTACACTGTTAAAGGGTAAAAATATAATTTGCAATTATATTT
CTGTTTTAATAGTTTAAATAGCTTAAATACATGATATTAAACTTGTCCAAAAGTTTGAACTTGAT
TGTCACACTTGATATGCATGAATAAGTTGTGATTTATGTCTATTTAAGACTTTTTTATGCCA
Found at i:11561382 original size:162 final size:162
Alignment explanation
Indices: 11560321--11561554 Score: 1030
Period size: 162 Copynumber: 7.7 Consensus size: 162
11560311 GAAAGTTGCA
* * * *
11560321 ATTTATGTTTGTTTAGGAC-TTTTTGTGTTGTTAAAGGGTAAAAATGTAATTTTGTAATTATATT
1 ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATATT
* * * * * * * * *
11560385 TTTGTTTTAATAGTTTAAATAG-TTTCAATACATGATATT-AA-TTGTCTGAATA-TTTAAACTT
66 TCTATTTTAACAATTTAGATAGCTCT-AATACATGATATTAAACTTGTC-CAAAAGTTTGAACTT
* *
11560446 GATTGCCATGA-TTGATATGCATGAATAAGTTGTG
129 GATTGTCA-CACTTGATATGCATGAATAAGTTGTG
* * * * * * * * *
11560480 GTTTTTGTTTGTTTAAGAC-TTTTTATGCTGTTAAAAGATAAAAATGCAAATTTGCAGTTAT-TG
1 ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATAT-
* * * * * * ** *
11560543 TTTTGTTTTAATAGTTTAAATAGGT-TAAATACATGATATTAAACTTGTCTGAAAGATTGAACTT
65 TTCTATTTTAACAATTTAGATAGCTCT-AATACATGATATTAAACTTGTCCAAAAGTTTGAACTT
*
11560607 -AGTT-TCCACACTTGATATGCATGAATAAGTTGCG
129 GA-TTGT-CACACTTGATATGCATGAATAAGTTGTG
* * * ** * * *
11560641 ATTTATGCCTATTTAAGACTTTTTTATGCCATTAAAGGGTAAAAATATAAATTTGCAATTACATT
1 ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATATT
* * * * * **
11560706 TATATTTTAAC-ATTTAGATAGCTCCAATACATGATATTATACTTATGCAAATTTTTGAACTTGA
66 TCTATTTTAACAATTTAGATAGCTCTAATACATGATATTAAACTTGTCCAAAAGTTTGAACTTGA
** **
11560770 TTGTCATGCTTGATATGCATGAATAAGTTGCA
131 TTGTCACACTTGATATGCATGAATAAGTTGTG
* ** * * *
11560802 ATTTATGTATGTTTAAGGTTTTTTTTGTGAC-GATAAAGGGCAAAAATATAATTTTGCAATTATA
1 ATTTATGTCTGTTTAA-GACTTTTTTGTG-CTGTTAAAGGGTAAAAATGTAATTTTGCAATTATA
* * * * * * * *
11560866 TTTCTGTTTTAATAGTCT--ACA--TCT-AT--ATGCTATTAAACTTGTTCAAATA-TTTCAACT
64 TTTCTATTTTAACAATTTAGATAGCTCTAATACATGATATTAAACTTGTCCAAA-AGTTTGAACT
*
11560923 TGATTGTCACGCTTGATATGCATGAATAAGTTGTG
128 TGATTGTCACACTTGATATGCATGAATAAGTTGTG
* * * * * * * **
11560958 ATCTATGTTTGTTTAAGAATTTTTTATGCTATTAAAAGGCAAAAATGTAATTTTATAATTATATT
1 ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATATT
* ** * * * * * * *
11561023 TTTATTTTAGTAGTTTAGATAGCTCCAATACATGATATTATACTTGTTCGAATGTTTGAACTTGG
66 TCTATTTTAACAATTTAGATAGCTCTAATACATGATATTAAACTTGTCCAAAAGTTTGAACTTGA
* ** ** * *
11561088 TTTTCATGCTTGATATGGGT-AAGAAAGTTAT-
131 TTGTCACACTTGATATGCATGAA-TAAGTTGTG
* * *** * *
11561119 AGTTTGTATCTGTTT-AGAAC-TTTTTACACTGTTAAAGGGTAAAAATATAA-TTTGGAATTATA
1 A-TTTATGTCTGTTTAAG-ACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATA
* *
11561181 TTTCTATTTTAACAATTTAGATAGCT-TAAATACATGATATTAAACCTATCCAAAAGTTTGAACT
64 TTTCTATTTTAACAATTTAGATAGCTCT-AATACATGATATTAAACTTGTCCAAAAGTTTGAACT
11561245 TGATTGTCACACTTGATATGCATGAATAAGTTGTG
128 TGATTGTCACACTTGATATGCATGAATAAGTTGTG
* * * * * * *
11561280 GTTTATGTCTATTTAAGACTTTTTTGTCCCGTTAAAGGGCAAAAATGCAATTTTACAATTATATT
1 ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATATT
* * * * *
11561345 TATGTTTTAACAATTTAAATAACTCTAATACATGATATTAAACTTGTCCGAAAGTTTGAACTTGA
66 TCTATTTTAACAATTTAGATAGCTCTAATACATGATATTAAACTTGTCCAAAAGTTTGAACTTGA
*
11561410 ATGTCACACTTGATATGCATGAATAAGTTGTG
131 TTGTCACACTTGATATGCATGAATAAGTTGTG
* * * * *
11561442 ATTTATGTCTATTCAAGACTTTTTTGTGTTTTTATAGGG-AAAAAGTGTAATTTTGCAATTATAT
1 ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAA-TGTAATTTTGCAATTATAT
* *
11561506 TTCTATTTTAACAATTTAGATAGCTCGAATACATGATATTATACTTGTC
65 TTCTATTTTAACAATTTAGATAGCTCTAATACATGATATTAAACTTGTC
11561555 TGAATGTTTT
Statistics
Matches: 863, Mismatches: 175, Indels: 71
0.78 0.16 0.06
Matches are distributed among these distances:
154 1 0.00
155 50 0.06
156 70 0.08
157 2 0.00
158 3 0.00
159 91 0.11
160 106 0.12
161 193 0.22
162 342 0.40
163 5 0.01
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (162 bp):
ATTTATGTCTGTTTAAGACTTTTTTGTGCTGTTAAAGGGTAAAAATGTAATTTTGCAATTATATT
TCTATTTTAACAATTTAGATAGCTCTAATACATGATATTAAACTTGTCCAAAAGTTTGAACTTGA
TTGTCACACTTGATATGCATGAATAAGTTGTG
Found at i:11562057 original size:13 final size:13
Alignment explanation
Indices: 11562022--11562060 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 13
11562012 TCGATAATTT
11562022 ACATTTTCAACAAG
1 ACATTTTC-ACAAG
*
11562036 TCAATTTTCACAAG
1 AC-ATTTTCACAAG
11562050 ACATTTTCACA
1 ACATTTTCACA
11562061 TTGAAAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
13 9 0.41
14 7 0.32
15 6 0.27
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.33
Consensus pattern (13 bp):
ACATTTTCACAAG
Found at i:11562141 original size:21 final size:21
Alignment explanation
Indices: 11562117--11562167 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
11562107 AAGCAAAAAG
*
11562117 TGCTAGACTAGAAGATA-AGCA
1 TGCTAGAATAGAAGA-AGAGCA
*
11562138 TGCTAGAATTGAAGAAGAGCA
1 TGCTAGAATAGAAGAAGAGCA
11562159 TGCTAGAAT
1 TGCTAGAAT
11562168 GGATCAAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.41, C:0.12, G:0.25, T:0.22
Consensus pattern (21 bp):
TGCTAGAATAGAAGAAGAGCA
Found at i:11562176 original size:21 final size:21
Alignment explanation
Indices: 11562134--11562177 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
11562124 CTAGAAGATA
* *
11562134 AGCATGCTAGAATTGAAGAAG
1 AGCATGCTAGAATGGAACAAG
*
11562155 AGCATGCTAGAATGGATCAAG
1 AGCATGCTAGAATGGAACAAG
11562176 AG
1 AG
11562178 TGTGCAAGAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.41, C:0.11, G:0.30, T:0.18
Consensus pattern (21 bp):
AGCATGCTAGAATGGAACAAG
Found at i:11564612 original size:29 final size:29
Alignment explanation
Indices: 11564553--11564623 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
11564543 TCTTGGTTTA
** *
11564553 AGGTTTAGGGTTGGATTAGGGTTTAGTTT
1 AGGTTTAGGGTTGGATTAGGGTCAAGGTT
* *
11564582 AGGTTTAGGGTTGGCTTGGGGTCAAGGTT
1 AGGTTTAGGGTTGGATTAGGGTCAAGGTT
*
11564611 AGGGTTTAAGGTT
1 A-GGTTTAGGGTT
11564624 TAGCTTAAGG
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
29 25 0.71
30 10 0.29
ACGTcount: A:0.17, C:0.03, G:0.41, T:0.39
Consensus pattern (29 bp):
AGGTTTAGGGTTGGATTAGGGTCAAGGTT
Found at i:11564652 original size:51 final size:50
Alignment explanation
Indices: 11564572--11564694 Score: 160
Period size: 51 Copynumber: 2.5 Consensus size: 50
11564562 GTTGGATTAG
* * *
11564572 GGTTTAGTTTA-GGTTTAGG-GTTGGCTTGGGGTCAAGGTTAGGGTTTAA
1 GGTTTAGTTAAGGGTTTGGGTGTTGGCTTGGGGTCAAGGTTAAGGTTTAA
* * *
11564620 GGTTTAGCTTAAGGTTTTGGGTGTTGGTTTGGGGTCAAGGTTAAGGTTTAG
1 GGTTTAG-TTAAGGGTTTGGGTGTTGGCTTGGGGTCAAGGTTAAGGTTTAA
*
11564671 GGTTTAGTTTAGGGTTTGGGTGTT
1 GGTTTAGTTAAGGGTTTGGGTGTT
11564695 TAGATTTAGG
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
48 7 0.11
49 3 0.05
50 21 0.33
51 33 0.52
ACGTcount: A:0.15, C:0.03, G:0.40, T:0.42
Consensus pattern (50 bp):
GGTTTAGTTAAGGGTTTGGGTGTTGGCTTGGGGTCAAGGTTAAGGTTTAA
Found at i:11564686 original size:19 final size:19
Alignment explanation
Indices: 11564657--11564811 Score: 127
Period size: 19 Copynumber: 8.1 Consensus size: 19
11564647 TTTGGGGTCA
*
11564657 AGGTTAAGGTTTAGGGTTT
1 AGGTTAGGGTTTAGGGTTT
* *
11564676 AGTTTAGGGTTTGGGTGTTT
1 AGGTTAGGGTTTAGG-GTTT
* * *
11564696 AGATTTAGGGTTTAAGGTCT
1 AG-GTTAGGGTTTAGGGTTT
* *
11564716 AGGTTAGGTTTTAGAGCTTT
1 AGGTTAGGGTTTAG-GGTTT
* *
11564736 -GGTTAAGGTTTAGGGTCT
1 AGGTTAGGGTTTAGGGTTT
* *
11564754 AGGTTAGGTTTTAGAGCTTT
1 AGGTTAGGGTTTAG-GGTTT
*
11564774 -GGTTAAGGTTTAGGGTTT
1 AGGTTAGGGTTTAGGGTTT
*
11564792 AGATTAGGGTTTA-GGTTT
1 AGGTTAGGGTTTAGGGTTT
11564810 AG
1 AG
11564812 AATTTGAGAT
Statistics
Matches: 106, Mismatches: 24, Indels: 13
0.74 0.17 0.09
Matches are distributed among these distances:
18 14 0.13
19 64 0.60
20 17 0.16
21 11 0.10
ACGTcount: A:0.19, C:0.03, G:0.35, T:0.43
Consensus pattern (19 bp):
AGGTTAGGGTTTAGGGTTT
Found at i:11564753 original size:38 final size:38
Alignment explanation
Indices: 11564704--11564805 Score: 168
Period size: 38 Copynumber: 2.7 Consensus size: 38
11564694 TTAGATTTAG
*
11564704 GGTTTAAGGTCTAGGTTAGGTTTTAGAGCTTTGGTTAA
1 GGTTTAGGGTCTAGGTTAGGTTTTAGAGCTTTGGTTAA
11564742 GGTTTAGGGTCTAGGTTAGGTTTTAGAGCTTTGGTTAA
1 GGTTTAGGGTCTAGGTTAGGTTTTAGAGCTTTGGTTAA
* * *
11564780 GGTTTAGGGTTTAGATTAGGGTTTAG
1 GGTTTAGGGTCTAGGTTAGGTTTTAG
11564806 GTTTAGAATT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 60 1.00
ACGTcount: A:0.20, C:0.04, G:0.34, T:0.42
Consensus pattern (38 bp):
GGTTTAGGGTCTAGGTTAGGTTTTAGAGCTTTGGTTAA
Found at i:11564894 original size:52 final size:51
Alignment explanation
Indices: 11564780--11564895 Score: 128
Period size: 52 Copynumber: 2.3 Consensus size: 51
11564770 CTTTGGTTAA
* *
11564780 GGTTTAGGGTTTAGATTAGGGTTTAGGTTTAGAATTTGAGATTAGATTTTG
1 GGTTTAGGGTTTCGATTAGGGTTTAGGTTTAGAATTTGAGATTAGATGTTG
* * * * *
11564831 GGTTTAAGGTTTCGCCTTAGGGTTTAGGTTTA-AGATTTGGGGTTTGTATGTT-
1 GGTTTAGGGTTTCG-ATTAGGGTTTAGGTTTAGA-ATTTGAGATTAG-ATGTTG
11564883 GGTTTAGGGTTTC
1 GGTTTAGGGTTTC
11564896 ACATGGGCAA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
51 13 0.24
52 37 0.69
53 4 0.07
ACGTcount: A:0.18, C:0.03, G:0.33, T:0.46
Consensus pattern (51 bp):
GGTTTAGGGTTTCGATTAGGGTTTAGGTTTAGAATTTGAGATTAGATGTTG
Found at i:11566736 original size:143 final size:141
Alignment explanation
Indices: 11566301--11566749 Score: 428
Period size: 144 Copynumber: 3.1 Consensus size: 141
11566291 TTTAATAAAC
* ** * * *
11566301 CAAAAATCATAAAATAATA-CTAAATCATGATCCAAAGCTTTTCATGAAAAACAGACTTTAAAAA
1 CAAAAATCATAAAATAATATC-AAATCATGATCTAAAGCTTTTTGTGAAAAATA-ACTTCAGAAA
* * *
11566365 GGTCAAATTACGAAAATATCATTAAAATA-TATTTTAGTAATTTTACACCTCATGT-GATACAAT
64 GGTCAAATTACG-AAATATCACT-AAATAGTATTTTAGTAATTTTACACCT--TTTAGATACGAT
*
11566428 CACAGTTTTTAATGCAA
125 CAAAGTTTTTAATGCAA
* * * * *
11566445 CAAAAATCATATAATAATTTCAAAACATGATCT--AGCGTGTTTTG-AAAAAAGCTAACATTGAG
1 CAAAAATCATAAAATAATATCAAATCATGATCTAAAGC-T-TTTTGTGAAAAA--TAAC-TTCAG
* * * ** * *
11566507 AAA-ATCAAATTACAAAAATATCTCTAAAGCGTATTTTAGTAATTTCATACCTTTCTAGATACGA
61 AAAGGTCAAATTAC-GAAATATCACTAAATAGTATTTTAGTAATTTTACACCTTT-TAGATACGA
* *
11566571 TC-AAGTTTTTTAATGTAC
124 TCAAAG-TTTTTAATGCAA
*
11566589 CAAAAATCATAAAATAATATCAAATCATGATTTAAAGCTTTTTGTGAAAAATTAACTTCAGAAAG
1 CAAAAATCATAAAATAATATCAAATCATGATCTAAAGCTTTTTGTGAAAAA-TAACTTCAGAAAG
* * * *
11566654 GTCAAATTACGAAATACCACTAAATAGTATTTTAGTAATTTTAGACCTTTTAAAGTATGATCAAA
65 GTCAAATTACGAAATATCACTAAATAGTATTTTAGTAATTTTACACCTTTTAGA-TACGATCAAA
*
11566719 GTTTTTAATGCAT
129 GTTTTTAATGCAA
11566732 CAAAAATCATAAAATAAT
1 CAAAAATCATAAAATAAT
11566750 GTTTAATTAT
Statistics
Matches: 246, Mismatches: 42, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
142 7 0.03
143 86 0.35
144 136 0.55
145 14 0.06
146 3 0.01
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (141 bp):
CAAAAATCATAAAATAATATCAAATCATGATCTAAAGCTTTTTGTGAAAAATAACTTCAGAAAGG
TCAAATTACGAAATATCACTAAATAGTATTTTAGTAATTTTACACCTTTTAGATACGATCAAAGT
TTTTAATGCAA
Found at i:11566780 original size:143 final size:143
Alignment explanation
Indices: 11566290--11566806 Score: 405
Period size: 144 Copynumber: 3.6 Consensus size: 143
11566280 GTTTTCATGA
** **
11566290 TTTTAATAAACCAAAAATCATAAAATAATA-CTAAATCATGATCCAAAGCTTTTCATGAAAAACA
1 TTTTAATGCACCAAAAATCATAAAATAATATC-AAATCATGATTTAAAGCTTTTCATGAAAAACA
* * * * * * *
11566354 GACTTT-AAAAAGGTCAAATTACGAAAATATCATTAAAATA-TATTTTAGTAATTTTACACCTCA
65 AACTTTCAGAAA-GTCAAATTACG-AAATACCACT-AAATAGTATTTTAGTAATTTCAGACCT-T
* * *
11566417 TGT-GATACAATCACAG-T
126 TCTAAATACGATCA-AGTT
* * * * *
11566434 TTTTAATGCAACAAAAATCATATAATAATTTCAAAACATGATCT--AGCGTGTTT--TGAAAAAA
1 TTTTAATGCACCAAAAATCATAAAATAATATCAAATCATGATTTAAAGC-T-TTTCATG-AAAAA
* * * * * * * ** *
11566495 GCTAACATTGAGAAAATCAAATTACAAAAATATCTCTAAAGCGTATTTTAGTAATTTCATACCTT
63 -CAAACTTTCAGAAAGTCAAATTAC-GAAATACCACTAAATAGTATTTTAGTAATTTCAGACCTT
*
11566560 TCTAGATACGATCAAGTT
126 TCTAAATACGATCAAGTT
* ** **
11566578 TTTTAATGTACCAAAAATCATAAAATAATATCAAATCATGATTTAAAGCTTTTTGTGAAAAATTA
1 TTTTAATGCACCAAAAATCATAAAATAATATCAAATCATGATTTAAAGCTTTTCATGAAAAACAA
*
11566643 AC-TTCAGAAAGGTCAAATTACGAAATACCACTAAATAGTATTTTAGTAATTTTAGACCTTT-TA
66 ACTTTCAGAAA-GTCAAATTACGAAATACCACTAAATAGTATTTTAGTAATTTCAGACCTTTCTA
*
11566706 AAGTATGATCAAAG-T
130 AA-TACGATC-AAGTT
* * ** *
11566721 TTTTAATGCATCAAAAATCATAAAATAATGTTTAATTATG-TTCTAAAAG-TTTTCATGAAAAAC
1 TTTTAATGCACCAAAAATCATAAAATAATATCAAATCATGATT-T-AAAGCTTTTCATGAAAAAC
*
11566784 AAACTTTGAGAAAGTCAAATTAC
64 AAACTTTCAGAAAGTCAAATTAC
11566807 AAAAAAACCC
Statistics
Matches: 302, Mismatches: 51, Indels: 41
0.77 0.13 0.10
Matches are distributed among these distances:
142 10 0.03
143 119 0.39
144 157 0.52
145 11 0.04
146 5 0.02
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.33
Consensus pattern (143 bp):
TTTTAATGCACCAAAAATCATAAAATAATATCAAATCATGATTTAAAGCTTTTCATGAAAAACAA
ACTTTCAGAAAGTCAAATTACGAAATACCACTAAATAGTATTTTAGTAATTTCAGACCTTTCTAA
ATACGATCAAGTT
Found at i:11568005 original size:16 final size:16
Alignment explanation
Indices: 11567984--11568020 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
11567974 TTTACTTGAT
11567984 GCATTCTAAAGATGAA
1 GCATTCTAAAGATGAA
11568000 GCATTCTAAAGATGAA
1 GCATTCTAAAGATGAA
11568016 GCATT
1 GCATT
11568021 GGATAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.27
Consensus pattern (16 bp):
GCATTCTAAAGATGAA
Found at i:11570315 original size:17 final size:17
Alignment explanation
Indices: 11570280--11570330 Score: 54
Period size: 16 Copynumber: 3.1 Consensus size: 17
11570270 TTATTAAAAA
11570280 TTTATTTTTTTCATCTTT
1 TTTATTTTTTT-ATCTTT
11570298 TTTATTATTTTT-TC-TT
1 TTTATT-TTTTTATCTTT
*
11570314 TTTATTCTTTTAT-TTT
1 TTTATTTTTTTATCTTT
11570330 T
1 T
11570331 AGGGTAAAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
15 4 0.14
16 12 0.41
17 2 0.07
18 6 0.21
19 5 0.17
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTATTTTTTTATCTTT
Found at i:11571397 original size:22 final size:24
Alignment explanation
Indices: 11571347--11571399 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 24
11571337 ATTACAAATC
*
11571347 AATAATAATACCAACATGACTAACC
1 AATAATAATACCAACATGAC-AACA
*
11571372 AATAATAATACTAACAT-A-AACA
1 AATAATAATACCAACATGACAACA
11571394 AATAAT
1 AATAAT
11571400 GAACAAACCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 9 0.35
24 1 0.04
25 16 0.62
ACGTcount: A:0.58, C:0.17, G:0.02, T:0.23
Consensus pattern (24 bp):
AATAATAATACCAACATGACAACA
Found at i:11575070 original size:29 final size:30
Alignment explanation
Indices: 11575015--11575088 Score: 87
Period size: 29 Copynumber: 2.5 Consensus size: 30
11575005 AGTTCAGTTC
*
11575015 AGTTTAAGGTTTAGGTTTGGATGAAGGTTT
1 AGTTTAAGGTTTAGGGTTGGATGAAGGTTT
* * **
11575045 AGTTT-AGGTTTAGGGTTGGCTTAAGGTCA
1 AGTTTAAGGTTTAGGGTTGGATGAAGGTTT
*
11575074 AGGTTAAGGTTTAGG
1 AGTTTAAGGTTTAGG
11575089 ATTATTGGGT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
29 23 0.62
30 14 0.38
ACGTcount: A:0.23, C:0.03, G:0.35, T:0.39
Consensus pattern (30 bp):
AGTTTAAGGTTTAGGGTTGGATGAAGGTTT
Found at i:11580548 original size:3 final size:3
Alignment explanation
Indices: 11580540--11580602 Score: 126
Period size: 3 Copynumber: 21.0 Consensus size: 3
11580530 GAGATTTTTC
11580540 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
11580588 ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT
11580603 TCATACATAC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 60 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:11581046 original size:2 final size:2
Alignment explanation
Indices: 11581041--11581068 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11581031 AAAAAAGCTT
11581041 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
11581069 ACACACACAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:11586620 original size:10 final size:10
Alignment explanation
Indices: 11586607--11586632 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
11586597 GTTTTTAATC
11586607 TTTTTTTCAT
1 TTTTTTTCAT
11586617 TTTTTTTCAT
1 TTTTTTTCAT
11586627 TTTTTT
1 TTTTTT
11586633 CATACTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTTTCAT
Found at i:11586620 original size:19 final size:19
Alignment explanation
Indices: 11586589--11586635 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
11586579 ATCATTTTTT
* *
11586589 ATTTTTTT-GTTTTTAATC
1 ATTTTTTTCATTTTTTATC
*
11586607 -TTTTTTTCATTTTTTTTC
1 ATTTTTTTCATTTTTTATC
11586625 ATTTTTTTCAT
1 ATTTTTTTCAT
11586636 ACTTTTAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 7 0.29
18 7 0.29
19 10 0.42
ACGTcount: A:0.13, C:0.09, G:0.02, T:0.77
Consensus pattern (19 bp):
ATTTTTTTCATTTTTTATC
Found at i:11590304 original size:4 final size:4
Alignment explanation
Indices: 11590295--11590329 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
11590285 TGAAATTTAA
11590295 AAAT AAAT AAAT AAAT AAAT -AAT AAAT AAAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAA
11590330 CAAAATAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
4 22 0.76
5 4 0.14
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:11592435 original size:19 final size:20
Alignment explanation
Indices: 11592396--11592435 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
11592386 CCATTTTTTT
* *
11592396 TTAATCTAATTTTTATTAAA
1 TTAATCTAATTTTAATAAAA
11592416 TTAAT-TAATTTTAATAAAA
1 TTAATCTAATTTTAATAAAA
11592435 T
1 T
11592436 AACAATGGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TTAATCTAATTTTAATAAAA
Found at i:11597756 original size:18 final size:18
Alignment explanation
Indices: 11597710--11597757 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
11597700 TCTATATAAA
*
11597710 AATGCATTATATTCTATT
1 AATGCATTATGTTCTATT
*
11597728 AATGCATTATGTTCTGTT
1 AATGCATTATGTTCTATT
11597746 AATGCATTATGT
1 AATGCATTATGT
11597758 GTGTTTATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.48
Consensus pattern (18 bp):
AATGCATTATGTTCTATT
Found at i:11603107 original size:22 final size:22
Alignment explanation
Indices: 11603079--11603125 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
11603069 ATTATTGTTA
11603079 TTTTTATATTAAAAATAATTAC
1 TTTTTATATTAAAAATAATTAC
11603101 TTTTTATATTAAAAATAATTAC
1 TTTTTATATTAAAAATAATTAC
11603123 TTT
1 TTT
11603126 ATTTGATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (22 bp):
TTTTTATATTAAAAATAATTAC
Found at i:11607544 original size:21 final size:22
Alignment explanation
Indices: 11607494--11607544 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
11607484 CAACAATGTC
* *
11607494 AAATAATCCATTCCAATTTTAA
1 AAATAATTCATTCCAATTATAA
*
11607516 AAAAAATTCATTCCAA-TATAA
1 AAATAATTCATTCCAATTATAA
*
11607537 AAGTAATT
1 AAATAATT
11607545 TATTTTTTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (22 bp):
AAATAATTCATTCCAATTATAA
Found at i:11608599 original size:2 final size:2
Alignment explanation
Indices: 11608594--11608624 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
11608584 ATATATATAT
*
11608594 AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
11608625 AAAGTACATC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11614137 original size:17 final size:17
Alignment explanation
Indices: 11614083--11614141 Score: 64
Period size: 17 Copynumber: 3.2 Consensus size: 17
11614073 TATTTTAATG
11614083 ACATTGGCCTCTGTTCT
1 ACATTGGCCTCTGTTCT
**
11614100 ACAATTCCACCCTCATGTTCT
1 AC-ATT--GGCCTC-TGTTCT
11614121 ACATTGGCCTCTGTTCT
1 ACATTGGCCTCTGTTCT
11614138 ACAT
1 ACAT
11614142 CCCTTGAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
17 12 0.35
18 7 0.21
20 7 0.21
21 8 0.24
ACGTcount: A:0.19, C:0.32, G:0.12, T:0.37
Consensus pattern (17 bp):
ACATTGGCCTCTGTTCT
Found at i:11617755 original size:16 final size:17
Alignment explanation
Indices: 11617731--11617765 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
11617721 TTTGTTAAAC
11617731 TTTATAAAAAATAAAAT
1 TTTATAAAAAATAAAAT
11617748 TTTA-AAAAAATAAAAT
1 TTTATAAAAAATAAAAT
11617764 TT
1 TT
11617766 AATTATTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (17 bp):
TTTATAAAAAATAAAAT
Found at i:11617766 original size:15 final size:15
Alignment explanation
Indices: 11617726--11617767 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
11617716 TTTATTTTGT
*
11617726 TAAACTTTATAAAAAA
1 TAAAATTTA-AAAAAA
11617742 TAAAATTTTAAAAAAA
1 TAAAA-TTTAAAAAAA
11617758 TAAAATTTAA
1 TAAAATTTAA
11617768 TTATTAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
15 5 0.21
16 15 0.62
17 4 0.17
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAAATTTAAAAAAA
Found at i:11622251 original size:8 final size:7
Alignment explanation
Indices: 11622188--11622251 Score: 51
Period size: 7 Copynumber: 9.3 Consensus size: 7
11622178 AATCAAGATC
11622188 AAAGTCA
1 AAAGTCA
11622195 AAA-TC-
1 AAAGTCA
11622200 AAAGTCA
1 AAAGTCA
* *
11622207 AAGGTTA
1 AAAGTCA
* *
11622214 AAAATTA
1 AAAGTCA
*
11622221 AAAGTTA
1 AAAGTCA
*
11622228 AATGTCA
1 AAAGTCA
11622235 AAAGTCA
1 AAAGTCA
11622242 AAAGGTCA
1 AAA-GTCA
11622250 AA
1 AA
11622252 GAAATGTAAC
Statistics
Matches: 46, Mismatches: 8, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
5 3 0.07
6 4 0.09
7 33 0.72
8 6 0.13
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.20
Consensus pattern (7 bp):
AAAGTCA
Found at i:11624609 original size:12 final size:12
Alignment explanation
Indices: 11624594--11624643 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
11624584 ATTAATATAT
*
11624594 AATAATAATAAT
1 AATAATAATAAC
* *
11624606 AATAACAACAAC
1 AATAATAATAAC
* *
11624618 AATAACAACAAC
1 AATAATAATAAC
11624630 AATAATAATAAC
1 AATAATAATAAC
11624642 AA
1 AA
11624644 AATTTTTAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.68, C:0.14, G:0.00, T:0.18
Consensus pattern (12 bp):
AATAATAATAAC
Found at i:11624862 original size:39 final size:38
Alignment explanation
Indices: 11624819--11624895 Score: 93
Period size: 39 Copynumber: 2.0 Consensus size: 38
11624809 TAAGCAAGAC
* * *
11624819 CCTAAAA-CAAAACTCTAAATTGAAACCTTAAAGTGAAAT
1 CCTAAAATCAAAA-TCTAAAATAAAACC-CAAAGTGAAAT
*
11624858 CCTAAAATGAAAATCTAAAATAAAACCCAAAGTGAAAT
1 CCTAAAATCAAAATCTAAAATAAAACCCAAAGTGAAAT
11624896 TTTAAACCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
38 10 0.30
39 19 0.58
40 4 0.12
ACGTcount: A:0.55, C:0.17, G:0.08, T:0.21
Consensus pattern (38 bp):
CCTAAAATCAAAATCTAAAATAAAACCCAAAGTGAAAT
Found at i:11624904 original size:19 final size:19
Alignment explanation
Indices: 11624878--11624934 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
11624868 AAATCTAAAA
* *
11624878 TAAAACCCAAAGTGAAATT
1 TAAAACCCTAAGTGAAACT
* *
11624897 TTAAACCCTAAGCGAAACT
1 TAAAACCCTAAGTGAAACT
11624916 TAAAAGCCCTAAGTGAAAC
1 TAAAA-CCCTAAGTGAAAC
11624935 CCTAAACCAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
19 19 0.61
20 12 0.39
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.19
Consensus pattern (19 bp):
TAAAACCCTAAGTGAAACT
Found at i:11634862 original size:17 final size:17
Alignment explanation
Indices: 11634840--11634879 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
11634830 TAGATACTTA
**
11634840 TATTTAAAATATTTATT
1 TATTTAAAATATAAATT
*
11634857 TATTTAATATATAAATT
1 TATTTAAAATATAAATT
11634874 TATTTA
1 TATTTA
11634880 TTAATTTAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTTAAAATATAAATT
Found at i:11634906 original size:27 final size:25
Alignment explanation
Indices: 11634849--11634904 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
11634839 ATATTTAAAA
* *
11634849 TATTTATTTATTTAATATATAAATT
1 TATTTATTAATTTAATAAATAAATT
11634874 TATTTATTAATTTAACATAAATAAA-T
1 TATTTATTAATTT-A-ATAAATAAATT
11634900 TATTT
1 TATTT
11634905 TACAGTTTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
25 12 0.44
26 7 0.26
27 8 0.30
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (25 bp):
TATTTATTAATTTAATAAATAAATT
Found at i:11642388 original size:49 final size:49
Alignment explanation
Indices: 11642318--11642417 Score: 200
Period size: 49 Copynumber: 2.0 Consensus size: 49
11642308 GTATATAAAT
11642318 AATTTATATGAAAATGAACATGTACAATACTTAAGTTTACTATGTTTTA
1 AATTTATATGAAAATGAACATGTACAATACTTAAGTTTACTATGTTTTA
11642367 AATTTATATGAAAATGAACATGTACAATACTTAAGTTTACTATGTTTTA
1 AATTTATATGAAAATGAACATGTACAATACTTAAGTTTACTATGTTTTA
11642416 AA
1 AA
11642418 CAAAAGACAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 51 1.00
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.40
Consensus pattern (49 bp):
AATTTATATGAAAATGAACATGTACAATACTTAAGTTTACTATGTTTTA
Found at i:11649284 original size:17 final size:17
Alignment explanation
Indices: 11649264--11649321 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
11649254 TATGCATATA
11649264 TTTTTTACATTTTTAAT
1 TTTTTTACATTTTTAAT
* *
11649281 TTTTTTAGA-TTTTCAT
1 TTTTTTACATTTTTAAT
*
11649297 TTCTTTTATATTTTTTAAT
1 TT-TTTTACA-TTTTTAAT
11649316 TTTTTT
1 TTTTTT
11649322 CTTATCATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
16 8 0.24
17 14 0.41
18 4 0.12
19 8 0.24
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTTTTACATTTTTAAT
Found at i:11650292 original size:15 final size:13
Alignment explanation
Indices: 11650259--11650299 Score: 50
Period size: 12 Copynumber: 3.2 Consensus size: 13
11650249 AAGCAGTTGC
11650259 AGAAGAGAGAAAAG
1 AGAAGA-AGAAAAG
11650273 AGAAGAAGAAATAG
1 AGAAGAAGAAA-AG
11650287 -G-AGAAGAAAAG
1 AGAAGAAGAAAAG
11650298 AG
1 AG
11650300 TTTTCATTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 2 0.08
12 9 0.36
13 6 0.24
14 8 0.32
ACGTcount: A:0.63, C:0.00, G:0.34, T:0.02
Consensus pattern (13 bp):
AGAAGAAGAAAAG
Found at i:11658520 original size:36 final size:36
Alignment explanation
Indices: 11658478--11658548 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
11658468 TTAATATTTC
*
11658478 AATAATAA-ATAGTATTATATTATTATTTTAATAATA
1 AATAATAATATA-TAATATATTATTATTTTAATAATA
*
11658514 AATAATAATATATAATATTTTATTATTTTAATAAT
1 AATAATAATATATAATATATTATTATTTTAATAAT
11658549 TAATGTTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 29 0.91
37 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (36 bp):
AATAATAATATATAATATATTATTATTTTAATAATA
Found at i:11658562 original size:33 final size:34
Alignment explanation
Indices: 11658478--11658564 Score: 86
Period size: 36 Copynumber: 2.4 Consensus size: 34
11658468 TTAATATTTC
*
11658478 AATAATAAATAGTATTATATTATTATTTTAATAATAAAT
1 AATAATAAATA--A-TATTTTATTATTTTAATAAT--AT
*
11658517 AATAATATATAATATTTTATTATTTTAATAAT-T
1 AATAATAAATAATATTTTATTATTTTAATAATAT
**
11658550 AATGTTAAATAATAT
1 AATAATAAATAATAT
11658565 AATAATATTT
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
33 13 0.30
36 19 0.44
37 1 0.02
39 10 0.23
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.48
Consensus pattern (34 bp):
AATAATAAATAATATTTTATTATTTTAATAATAT
Found at i:11658753 original size:21 final size:21
Alignment explanation
Indices: 11658729--11658792 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 21
11658719 AGATACTTTC
11658729 AATATAAAATATAAATATTTT
1 AATATAAAATATAAATATTTT
11658750 AATAGT----T-TAAATATTTT
1 AATA-TAAAATATAAATATTTT
* *
11658767 AATA-ATAAATATTACTATTTT
1 AATATA-AAATATAAATATTTT
11658788 AATAT
1 AATAT
11658793 TAGTAAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 15
0.66 0.04 0.30
Matches are distributed among these distances:
17 14 0.42
18 1 0.03
20 1 0.03
21 16 0.48
22 1 0.03
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
AATATAAAATATAAATATTTT
Found at i:11658925 original size:13 final size:13
Alignment explanation
Indices: 11658885--11658927 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
11658875 AAGTATTTTT
*
11658885 ATATTAATATAAT
1 ATATTAATATAAA
* *
11658898 ATTTTAATATTAA
1 ATATTAATATAAA
*
11658911 ATATTATTATAAA
1 ATATTAATATAAA
11658924 ATAT
1 ATAT
11658928 AATTATTCTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
ATATTAATATAAA
Found at i:11662936 original size:22 final size:22
Alignment explanation
Indices: 11662911--11662955 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
11662901 GACTTACCCT
*
11662911 ATAAGATATCTTTGAACTAGAC
1 ATAAGATATCTCTGAACTAGAC
11662933 ATAAGATATCTCTGAACTAGAC
1 ATAAGATATCTCTGAACTAGAC
11662955 A
1 A
11662956 CTAGTGTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (22 bp):
ATAAGATATCTCTGAACTAGAC
Found at i:11663743 original size:26 final size:28
Alignment explanation
Indices: 11663712--11663765 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
11663702 AATTTAGCCT
*
11663712 AATTAAA-GAAAAATACAAAA-ACCCAA
1 AATTAAAGGAAAAATAAAAAATACCCAA
11663738 AATTAAAGGGAAAAATAAAAAATACCCA
1 AATTAAA-GGAAAAATAAAAAATACCCA
11663766 CCCGTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 7 0.29
28 12 0.50
29 5 0.21
ACGTcount: A:0.67, C:0.13, G:0.07, T:0.13
Consensus pattern (28 bp):
AATTAAAGGAAAAATAAAAAATACCCAA
Found at i:11670202 original size:19 final size:19
Alignment explanation
Indices: 11670156--11670204 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
11670146 AGGTCTAAGT
**
11670156 TAGGGTTTAGGGTTTGGTT
1 TAGGGTTTAGGGTTTGGGG
* **
11670175 TTGAATTTAGGGTTTGGGG
1 TAGGGTTTAGGGTTTGGGG
11670194 TAGGGTTTAGG
1 TAGGGTTTAGG
11670205 ATTAGGCTTA
Statistics
Matches: 22, Mismatches: 8, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (19 bp):
TAGGGTTTAGGGTTTGGGG
Found at i:11670289 original size:17 final size:17
Alignment explanation
Indices: 11670267--11670308 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
11670257 AGGGTTATGA
11670267 TTTCATGCA-ATTTGGGG
1 TTTCATG-AGATTTGGGG
11670284 TTTCATGAGATTTGGGG
1 TTTCATGAGATTTGGGG
*
11670301 TTTAATGA
1 TTTCATGA
11670309 AATTATACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 1 0.04
17 22 0.96
ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43
Consensus pattern (17 bp):
TTTCATGAGATTTGGGG
Found at i:11672395 original size:20 final size:19
Alignment explanation
Indices: 11672350--11672397 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 19
11672340 TTGTTGATAG
* *
11672350 ATTTTAACTAAGTTTGACT
1 ATTTTGACTAAGTTTGACA
*
11672369 TTGTTTGACTAAGTTTGACAA
1 AT-TTTGACTAAGTTTGAC-A
11672390 ATTTTGAC
1 ATTTTGAC
11672398 CTTGGGGCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 1 0.04
20 21 0.91
21 1 0.04
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (19 bp):
ATTTTGACTAAGTTTGACA
Found at i:11673311 original size:21 final size:21
Alignment explanation
Indices: 11673287--11673331 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
11673277 ACATTGAAAA
*
11673287 AATTG-AAAATATATTATATAT
1 AATTGTAAAATA-ATTATAAAT
*
11673308 AATTGTATAATAATTATAAAT
1 AATTGTAAAATAATTATAAAT
11673329 AAT
1 AAT
11673332 ATTAGTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.42
Consensus pattern (21 bp):
AATTGTAAAATAATTATAAAT
Found at i:11673975 original size:22 final size:22
Alignment explanation
Indices: 11673949--11673990 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
11673939 GGTTGGTCTC
11673949 ATATTAATTAAATAATTAATAT
1 ATATTAATTAAATAATTAATAT
**
11673971 ATATTAATTATTTAATTAAT
1 ATATTAATTAAATAATTAAT
11673991 GGCACTTGAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTAATTAAATAATTAATAT
Found at i:11674162 original size:23 final size:24
Alignment explanation
Indices: 11674119--11674167 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
11674109 CAAAATAGAC
*
11674119 ATATAAGAACACACAATTAAGTCT
1 ATATAAGAACACACAAATAAGTCT
11674143 ATATAA-AACA-AGCAAATAAGTCT
1 ATATAAGAACACA-CAAATAAGTCT
11674166 AT
1 AT
11674168 TCAAATAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 1 0.04
23 16 0.70
24 6 0.26
ACGTcount: A:0.53, C:0.14, G:0.08, T:0.24
Consensus pattern (24 bp):
ATATAAGAACACACAAATAAGTCT
Found at i:11679322 original size:15 final size:15
Alignment explanation
Indices: 11679304--11679335 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
11679294 TAATGACACT
11679304 TGGCACTTAGACATG
1 TGGCACTTAGACATG
*
11679319 TGGCACTTGGACATG
1 TGGCACTTAGACATG
11679334 TG
1 TG
11679336 ACATGTGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (15 bp):
TGGCACTTAGACATG
Found at i:11679877 original size:16 final size:17
Alignment explanation
Indices: 11679845--11679878 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
11679835 TTTTCCTCCA
11679845 AATTTCAAATTTATCAT
1 AATTTCAAATTTATCAT
*
11679862 AATTTC-AATTTTTCAT
1 AATTTCAAATTTATCAT
11679878 A
1 A
11679879 TTTTGATTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTTCAAATTTATCAT
Found at i:11680757 original size:18 final size:19
Alignment explanation
Indices: 11680734--11680772 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11680724 TGATTTAATT
*
11680734 TTATGTTA-AATTTATTAA
1 TTATGTTATAATTCATTAA
11680752 TTATGTTATAATTCATTAA
1 TTATGTTATAATTCATTAA
11680771 TT
1 TT
11680773 GATTATTTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.56
Consensus pattern (19 bp):
TTATGTTATAATTCATTAA
Found at i:11680877 original size:3 final size:3
Alignment explanation
Indices: 11680869--11680906 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
11680859 CTTAGAGCTT
11680869 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11680907 TTTTTTTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:11682098 original size:12 final size:12
Alignment explanation
Indices: 11682076--11682106 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
11682066 AAAAATAAAT
11682076 AAGAG-AAGATA
1 AAGAGAAAGATA
11682087 AAGAGAAAGATA
1 AAGAGAAAGATA
11682099 AAGAGAAA
1 AAGAGAAA
11682107 ATTAAGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.26
12 14 0.74
ACGTcount: A:0.68, C:0.00, G:0.26, T:0.06
Consensus pattern (12 bp):
AAGAGAAAGATA
Found at i:11683028 original size:19 final size:19
Alignment explanation
Indices: 11683004--11683042 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
11682994 ATTTAGTTAC
*
11683004 AACTGATTGTAATTTGTAT
1 AACTGATTGTAATCTGTAT
11683023 AACTGATTGTAATCTGTAT
1 AACTGATTGTAATCTGTAT
11683042 A
1 A
11683043 CATTTATATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (19 bp):
AACTGATTGTAATCTGTAT
Found at i:11684818 original size:5 final size:6
Alignment explanation
Indices: 11684801--11684844 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
11684791 TGATATAATA
11684801 TTAAAT TTAAAT TT-AAT TTAAATT TTAAAAT TT-AAT TTAAAT TT
1 TTAAAT TTAAAT TTAAAT TTAAA-T TT-AAAT TTAAAT TTAAAT TT
11684845 GACTCAAAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
5 10 0.29
6 15 0.44
7 6 0.18
8 3 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (6 bp):
TTAAAT
Found at i:11684820 original size:11 final size:11
Alignment explanation
Indices: 11684804--11684844 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
11684794 TATAATATTA
11684804 AATTTAAATTT
1 AATTTAAATTT
11684815 AATTTAAA-TT
1 AATTTAAATTT
*
11684825 --TTAAAATTT
1 AATTTAAATTT
11684834 AATTTAAATTT
1 AATTTAAATTT
11684845 GACTCAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
8 5 0.20
9 2 0.08
10 2 0.08
11 16 0.64
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (11 bp):
AATTTAAATTT
Found at i:11684833 original size:19 final size:18
Alignment explanation
Indices: 11684796--11684844 Score: 73
Period size: 19 Copynumber: 2.7 Consensus size: 18
11684786 TAAATTGATA
11684796 TAATATTAAA-TTTAAATT
1 TAAT-TTAAATTTTAAATT
11684814 TAATTTAAATTTTAAAATT
1 TAATTTAAATTTT-AAATT
11684833 TAATTTAAATTT
1 TAATTTAAATTT
11684845 GACTCAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
17 5 0.17
18 7 0.24
19 17 0.59
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAATTTAAATTTTAAATT
Found at i:11690477 original size:59 final size:60
Alignment explanation
Indices: 11690384--11690507 Score: 196
Period size: 59 Copynumber: 2.1 Consensus size: 60
11690374 TTGTTTGAAT
** *
11690384 AAAAAAAATCTTTTAAATTCATTAATCTAAGTTTATTTCTGATTTAAGATATCTTGGTTC
1 AAAAAAAATCTTTTAAATTCATTAATCTAAGTTTATTTCTGATCCAAAATATCTTGGTTC
* *
11690444 AAAAAAAA-CTTTTAAATTCATTAATCTGAGTTTATTTCTTATCCAAAATATCTTGGTTC
1 AAAAAAAATCTTTTAAATTCATTAATCTAAGTTTATTTCTGATCCAAAATATCTTGGTTC
11690503 AAAAA
1 AAAAA
11690508 CTTTTATAAT
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
59 51 0.86
60 8 0.14
ACGTcount: A:0.40, C:0.11, G:0.07, T:0.42
Consensus pattern (60 bp):
AAAAAAAATCTTTTAAATTCATTAATCTAAGTTTATTTCTGATCCAAAATATCTTGGTTC
Found at i:11691294 original size:19 final size:19
Alignment explanation
Indices: 11691270--11691309 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
11691260 GAAATAAAAT
11691270 AAAATAAAACAAAATCAAA
1 AAAATAAAACAAAATCAAA
* *
11691289 AAAATAAAATAAAATGAAA
1 AAAATAAAACAAAATCAAA
11691308 AA
1 AA
11691310 GGGAAAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.80, C:0.05, G:0.03, T:0.12
Consensus pattern (19 bp):
AAAATAAAACAAAATCAAA
Found at i:11691308 original size:6 final size:5
Alignment explanation
Indices: 11691261--11691308 Score: 62
Period size: 5 Copynumber: 9.6 Consensus size: 5
11691251 TTTGGGTTAG
* *
11691261 AAATA AAATA AAATA AAACA AAATC AAA-A AAATA AAATA AAATGA AAA
1 AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAATA AAAT-A AAA
11691309 AGGGAAAAGG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
4 3 0.08
5 30 0.81
6 4 0.11
ACGTcount: A:0.79, C:0.04, G:0.02, T:0.15
Consensus pattern (5 bp):
AAATA
Found at i:11692185 original size:3 final size:3
Alignment explanation
Indices: 11692179--11692211 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
11692169 AAAAGAAAAA
*
11692179 AAT AAT -AT AAT AAT AAT GAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
11692212 TGAAGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11692471 original size:38 final size:38
Alignment explanation
Indices: 11692357--11692474 Score: 155
Period size: 38 Copynumber: 3.1 Consensus size: 38
11692347 AAATGGGCGT
* * * *
11692357 AAATGGGCTCGGACATAAATGTAATTGGACTTAACATC
1 AAATGGGCTCGGATACAAATGTAATTGGACCTGACATC
* * * *
11692395 AAATGGGCTCGAATGCAAATGTAATTGGGCCCGACATC
1 AAATGGGCTCGGATACAAATGTAATTGGACCTGACATC
*
11692433 AAATGGGCTCGGATACAAATGTAATTGGACCTGGCATC
1 AAATGGGCTCGGATACAAATGTAATTGGACCTGACATC
11692471 AAAT
1 AAAT
11692475 AAGGACACAA
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (38 bp):
AAATGGGCTCGGATACAAATGTAATTGGACCTGACATC
Found at i:11692839 original size:119 final size:118
Alignment explanation
Indices: 11692703--11693025 Score: 326
Period size: 119 Copynumber: 2.7 Consensus size: 118
11692693 ACAGAGCCAT
* * ** *
11692703 GAATCATAAAAAATGATCTAGACTGAGCCAAGATCAAATGACCAGGATGAAA-CTATGAGTTAAA
1 GAATCATAAAAAATGATCTGGACTGAGCCAAGA-CAAGTGACCAGGATGAAATC-ACAAGTCAAA
*
11692767 ATAAAACGATCAGGATCGAGTCGAGGTCACAAATAAATGACCAGGAAAAAA-TCAC
64 ATAAAACGATCAAGATCGAGTCGAGGTCACAAATAAATGACCAGGAAAAAACT-AC
* * *
11692822 GAATCATCAAAAATGATCTGGACTGAGCCAAGACTAAGTAACCGGGATGAAATCACAAGTCAAAA
1 GAATCATAAAAAATGATCTGGACTGAGCCAAGAC-AAGTGACCAGGATGAAATCACAAGTCAAAA
** * * * * *
11692887 TAAAGTGATCAAGATTGAGTCGAGGTCACAAATAGATGATCGGGATAAAACTAC
65 TAAAACGATCAAGATCGAGTCGAGGTCACAAATAAATGACCAGGAAAAAACTAC
* * * * * * * * *
11692941 AAATCATTAAAAATGATTTGGACTGGGTCAAGAACAAGTGACCAGAATAAAATCACGAGTTAAAA
1 GAATCATAAAAAATGATCTGGACTGAGCCAAG-ACAAGTGACCAGGATGAAATCACAAGTCAAAA
* * * *
11693006 TCAAGCAACCAAGATCGAGT
65 TAAAACGATCAAGATCGAGT
11693026 TAAGGTTGAA
Statistics
Matches: 168, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
118 1 0.01
119 163 0.97
120 4 0.02
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (118 bp):
GAATCATAAAAAATGATCTGGACTGAGCCAAGACAAGTGACCAGGATGAAATCACAAGTCAAAAT
AAAACGATCAAGATCGAGTCGAGGTCACAAATAAATGACCAGGAAAAAACTAC
Found at i:11693501 original size:22 final size:21
Alignment explanation
Indices: 11693450--11693502 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
11693440 GCATTTCATC
*
11693450 AACTTGAATGCACATATTATT
1 AACTTGAATGCACATATTAGT
* * *
11693471 AGCTTGAATGCACATCTTCGGT
1 AACTTGAATGCACATATT-AGT
11693493 AACTTGAATG
1 AACTTGAATG
11693503 TTTATTTCCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (21 bp):
AACTTGAATGCACATATTAGT
Found at i:11695327 original size:179 final size:179
Alignment explanation
Indices: 11695017--11695372 Score: 516
Period size: 179 Copynumber: 2.0 Consensus size: 179
11695007 AAGCACTGGA
* * *
11695017 CGAAACATGAATCTTGTCAGCATAAATTTGGCATTTATAATATTTTTGAGCATAATCGATGCAAT
1 CGAAACATGAATCTTGTCAGCATAAATATGACATTTATAATATTTTTGAGCATAATCAATGCAAT
*
11695082 CTTTTTTCATTGTCAACCAGTAATATCCAGCTCGGATAACCTATCATGCCATCATATGCCTATTT
66 CTTTTTTCATTGTCAACCAGTAATATCCAGCTCGGATAACCTATCATGCCATCATATACCTATTT
* * * * *
11695147 GCATGTGCTCTGCATGTGCTAGTGTGAACTTCTTCAATAATCTTTTTGG
131 GCATGTGCTCCGCATGTGCCACTATAAACTTCTTCAATAATCTTTTTGG
*
11695196 CGAAGCATGAATCTTGTCAGCATAAATATGACATTTATAATATTTTTGAGCATAA-CTAATGCAA
1 CGAAACATGAATCTTGTCAGCATAAATATGACATTTATAATATTTTTGAGCATAATC-AATGCAA
* ** * * * *
11695260 TCTTTTTTCATTGTCAACCAGTAATATCTAGCTCTTATAACTTGTCATGCCATTATATACTTATT
65 TCTTTTTTCATTGTCAACCAGTAATATCCAGCTCGGATAACCTATCATGCCATCATATACCTATT
* * *
11695325 TGCTTGTGCTCCGTATGTGCCACTATAAACTTCTTCAATATTCTTTTT
130 TGCATGTGCTCCGCATGTGCCACTATAAACTTCTTCAATAATCTTTTT
11695373 AGGCTCTGAA
Statistics
Matches: 156, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
178 1 0.01
179 155 0.99
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.39
Consensus pattern (179 bp):
CGAAACATGAATCTTGTCAGCATAAATATGACATTTATAATATTTTTGAGCATAATCAATGCAAT
CTTTTTTCATTGTCAACCAGTAATATCCAGCTCGGATAACCTATCATGCCATCATATACCTATTT
GCATGTGCTCCGCATGTGCCACTATAAACTTCTTCAATAATCTTTTTGG
Found at i:11704644 original size:18 final size:18
Alignment explanation
Indices: 11704600--11704638 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
11704590 GAAATAAAAT
*
11704600 AAAACAAAACAAAATCAA
1 AAAATAAAACAAAATCAA
* *
11704618 AAAATAAAATAAAATGAA
1 AAAATAAAACAAAATCAA
11704636 AAA
1 AAA
11704639 GAAAAAACCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.79, C:0.08, G:0.03, T:0.10
Consensus pattern (18 bp):
AAAATAAAACAAAATCAA
Found at i:11705721 original size:38 final size:38
Alignment explanation
Indices: 11705679--11705771 Score: 123
Period size: 38 Copynumber: 2.4 Consensus size: 38
11705669 TGGGCCTAAA
* * *
11705679 TGGGCCCGACATCAAATGGGCTCGGATGCAAATGTAAT
1 TGGGCCCGGCATCAAATGGGCTCAGATACAAATGTAAT
* * *
11705717 TGGGCCGGGCATCAGATGGGCTCAGCTACAAATGTAAT
1 TGGGCCCGGCATCAAATGGGCTCAGATACAAATGTAAT
*
11705755 TGGGCCTGGCATCAAAT
1 TGGGCCCGGCATCAAAT
11705772 AGGTGTCTAC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (38 bp):
TGGGCCCGGCATCAAATGGGCTCAGATACAAATGTAAT
Found at i:11707073 original size:129 final size:129
Alignment explanation
Indices: 11706940--11707332 Score: 282
Period size: 129 Copynumber: 3.0 Consensus size: 129
11706930 GATTAAAGAG
11706940 TTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATTGTGAATGATTTGTATC
1 TTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATTGTGAATGATTTGTATC
11707005 CAATTTATGATATTCATGAATGTGTTTTTTAAAAAATTCTTCTAATTGTCTAATATCATAAAGT
66 CAATTTATGATATTCATGAATGTGTTTTTTAAAAAATTCTTCTAATTGTCTAATATCATAAAGT
* ** * *** *
11707069 TTTAT--C-T-TTG-TCA-ACACATAACTACCTTCATTG-T-TTT---AATTAGCTGAATCCATT
1 TTTATCCCATGGTGATCATA-ATTTAA-AAAAGT-ATTGTTCTTTCCAAATT-G-TGAAT-GATT
* * * * * * *** * *
11707123 TTTCACAAAACTCATTTTTTAGAAGATT--TCAAT-T-TTTTTT-AAAAATAAATC-AAGTATC-
60 TGT-----ATC-CAATTTAT-G-ATATTCATGAATGTGTTTTTTAAAAAATTCTTCTAATTGTCT
* * *
11707181 AACTGTTGATTAAAGAG
117 AA-T-ATCA-TAAAG-T
*
11707198 TTTATCCCATGGTGATCATAATTTATAAAAGTATTGTTCTTTCCAAATTGTGAATGATTTGTATC
1 TTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATTGTGAATGATTTGTATC
*
11707263 CAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGTCTAATATCATAAAGT
66 CAATTTATGATATTCATGAATGTGTTTTTTAAAAAATTCTTCTAATTGTCTAATATCATAAAGT
11707327 TTTATC
1 TTTATC
11707333 TTTGTCAACA
Statistics
Matches: 182, Mismatches: 46, Indels: 72
0.61 0.15 0.24
Matches are distributed among these distances:
121 4 0.02
122 1 0.01
123 6 0.03
124 15 0.08
125 7 0.04
126 15 0.08
127 12 0.07
128 21 0.12
129 22 0.12
130 21 0.12
131 11 0.06
132 15 0.08
133 7 0.04
134 14 0.08
135 6 0.03
136 1 0.01
137 4 0.02
ACGTcount: A:0.33, C:0.12, G:0.11, T:0.44
Consensus pattern (129 bp):
TTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATTGTGAATGATTTGTATC
CAATTTATGATATTCATGAATGTGTTTTTTAAAAAATTCTTCTAATTGTCTAATATCATAAAGT
Found at i:11707125 original size:258 final size:258
Alignment explanation
Indices: 11706666--11707438 Score: 1465
Period size: 258 Copynumber: 3.0 Consensus size: 258
11706656 TATACAAGAT
*
11706666 ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTGCCAAATT
1 ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATT
11706731 GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGT
66 GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGT
* * *
11706796 CTAATATCATAAAGTTTTATCTTTGTCAACTCATAACTACCTTCATTATTTTAATTAGCTGAATA
131 CTAATATCATAAAGTTTTATCTTTGTCAACACATAACTACCTTCATTGTTTTAATTAGCTGAATC
11706861 CATTTTTCACAAAACTCATTTTTTAGAAGATTTCAATTTTTTTTAAAAATAAATCAAGTATCA
196 CATTTTTCACAAAACTCATTTTTTAGAAGATTTCAATTTTTTTTAAAAATAAATCAAGTATCA
11706924 ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATT
1 ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATT
*
11706989 GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAAAAAATTCTTCTAATTGT
66 GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGT
11707054 CTAATATCATAAAGTTTTATCTTTGTCAACACATAACTACCTTCATTGTTTTAATTAGCTGAATC
131 CTAATATCATAAAGTTTTATCTTTGTCAACACATAACTACCTTCATTGTTTTAATTAGCTGAATC
11707119 CATTTTTCACAAAACTCATTTTTTAGAAGATTTCAATTTTTTTTAAAAATAAATCAAGTATCA
196 CATTTTTCACAAAACTCATTTTTTAGAAGATTTCAATTTTTTTTAAAAATAAATCAAGTATCA
*
11707182 ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTATAAAAGTATTGTTCTTTCCAAATT
1 ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATT
11707247 GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGT
66 GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGT
*
11707312 CTAATATCATAAAGTTTTATCTTTGTCAACACATAACTACCTTCATTGTTTTAATTAGCTTAATC
131 CTAATATCATAAAGTTTTATCTTTGTCAACACATAACTACCTTCATTGTTTTAATTAGCTGAATC
* *
11707377 CATTTTTCACAAAACTTATTTTTTAGAAGATTTCAATTTTTTTAAAAAATAAATCAAGTATC
196 CATTTTTCACAAAACTCATTTTTTAGAAGATTTCAATTTTTTTTAAAAATAAATCAAGTATC
11707439 GTAGCAATTT
Statistics
Matches: 505, Mismatches: 10, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
258 505 1.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (258 bp):
ACTGTTGATTAAAGAGTTTATCCCATGGTGATCATAATTTAAAAAAGTATTGTTCTTTCCAAATT
GTGAATGATTTGTATCCAATTTATGATATTCATGAATGTGTTTTTTAGAAAATTCTTCTAATTGT
CTAATATCATAAAGTTTTATCTTTGTCAACACATAACTACCTTCATTGTTTTAATTAGCTGAATC
CATTTTTCACAAAACTCATTTTTTAGAAGATTTCAATTTTTTTTAAAAATAAATCAAGTATCA
Found at i:11716500 original size:72 final size:69
Alignment explanation
Indices: 11716412--11716662 Score: 261
Period size: 72 Copynumber: 3.5 Consensus size: 69
11716402 AAAAACATGT
* * * *
11716412 ATGTTGAAACTATATTTTGAATATTCTAAAATTTTATCAAAAATTGCATTTTACAAATAAAAGAT
1 ATGTTGAAACTATATTTT-AAAATTCTGAAATTTTAACAAAGATTGCATTTTA-AAATAAAA-AT
11716477 GTAG-TG
63 GTAGTTG
* * *
11716483 AATGTTGAATCTATATTTTCAAAATTATGAAATTTTAACAAAGATCGCATTTTAAAAATAAAAAA
1 -ATGTTGAAACTATATTTT-AAAATTCTGAAATTTTAACAAAGATTGCATTTT-AAAAT-AAAAA
11716548 TGTAGTTG
62 TGTAGTTG
* * * *
11716556 ATATTGAAACTATATTTTAAAATTCTGGAATTTTAACAAAGACTACATTTTTAAAATAAAAATGT
1 ATGTTGAAACTATATTTTAAAATTCTGAAATTTTAACAAAGATTGCA-TTTTAAAATAAAAATGT
* *
11716621 AATAG
65 AGTTG
* * * *
11716626 ATATTCAAGCTATATTTTCCAAATTCTGAAATTTTAA
1 ATGTTGAAACTATATTTT-AAAATTCTGAAATTTTAA
11716663 TAAAAACCAT
Statistics
Matches: 153, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
70 27 0.18
71 45 0.29
72 74 0.48
73 7 0.05
ACGTcount: A:0.44, C:0.08, G:0.10, T:0.39
Consensus pattern (69 bp):
ATGTTGAAACTATATTTTAAAATTCTGAAATTTTAACAAAGATTGCATTTTAAAATAAAAATGTA
GTTG
Found at i:11716617 original size:71 final size:71
Alignment explanation
Indices: 11716415--11716757 Score: 322
Period size: 71 Copynumber: 4.8 Consensus size: 71
11716405 AACATGTATG
* * * * * * *
11716415 TTGAAACTATATTTTGAATATTCTAAAATTTTATCAAAAATTGCA-TTTTACAAATAAAAGATGT
1 TTGAAACTATATTTTCAAAATTCTGAAATTTTAACAAAGA-TACATTTTTA-AAATAAAAAATGT
* *
11716479 AGT-GAATG
64 AATAG-ATA
* * * *
11716487 TTGAATCTATATTTTCAAAATTATGAAATTTTAACAAAGATCGCATTTTAAAAATAAAAAATGTA
1 TTGAAACTATATTTTCAAAATTCTGAAATTTTAACAAAGAT-ACATTTTTAAAATAAAAAATGTA
* *
11716552 GTTGATA
65 ATAGATA
*
11716559 TTGAAACTATATTTT-AAAATTCTGGAATTTTAACAAAGACTACATTTTTAAAAT-AAAAATGTA
1 TTGAAACTATATTTTCAAAATTCTGAAATTTTAACAAAGA-TACATTTTTAAAATAAAAAATGTA
11716622 ATAGATA
65 ATAGATA
* * * * *
11716629 TTCAAGCTATATTTTCCAAATTCTGAAATTTTAATAAA-A-ACCATGTTTCT-AAGTAAAAAATG
1 TTGAAACTATATTTTCAAAATTCTGAAATTTTAACAAAGATA-CAT-TTT-TAAAATAAAAAATG
11716691 TAATAGATA
63 TAATAGATA
* * * * *
11716700 TTGAAACTATACTTTCAAAATTCTAAAATCTTAACATAGATAGAGTTTTTAAAATAAA
1 TTGAAACTATATTTTCAAAATTCTGAAATTTTAACAAAGATACA-TTTTTAAAATAAA
11716758 TAACATAGTC
Statistics
Matches: 225, Mismatches: 33, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
68 1 0.00
69 3 0.01
70 34 0.15
71 101 0.45
72 79 0.35
73 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.37
Consensus pattern (71 bp):
TTGAAACTATATTTTCAAAATTCTGAAATTTTAACAAAGATACATTTTTAAAATAAAAAATGTAA
TAGATA
Found at i:11716656 original size:142 final size:141
Alignment explanation
Indices: 11716415--11716757 Score: 370
Period size: 142 Copynumber: 2.4 Consensus size: 141
11716405 AACATGTATG
* * * *
11716415 TTGAAACTATATTTTGAATATTCTAAAATTTTATCAAAAATTGCA-TTTTACAAATAAAAGATGT
1 TTGAAACTATATTTT-AAAATTCTAAAATTTTAACAAAGA-TACATTTTTA-AAATAAAAGATGT
* * * * *
11716479 AGTGAATGTTGAATCTATATTTTCAAAATTATGAAATTTTAACAAAGATCGCAT-TTTAAAAATA
63 AATGAATATTCAAGCTATATTTTCAAAATTATGAAATTTTAACAAA-AAC-CATGTTTAAAAATA
* *
11716543 AAAAATGTAGTTGATA
126 AAAAATGTAATAGATA
**
11716559 TTGAAACTATATTTTAAAATTCTGGAATTTTAACAAAGACTACATTTTTAAAATAAAA-ATGTAA
1 TTGAAACTATATTTTAAAATTCTAAAATTTTAACAAAGA-TACATTTTTAAAATAAAAGATGTAA
* * * ** *
11716623 T-AGATATTCAAGCTATATTTTCCAAATTCTGAAATTTTAATAAAAACCATGTTTCTAAGTAAAA
65 TGA-ATATTCAAGCTATATTTTCAAAATTATGAAATTTTAACAAAAACCATGTTTAAAAATAAAA
11716687 AATGTAATAGATA
129 AATGTAATAGATA
* * * *
11716700 TTGAAACTATACTTTCAAAATTCTAAAATCTTAACATAGATAGAGTTTTTAAAATAAA
1 TTGAAACTATA-TTTTAAAATTCTAAAATTTTAACAAAGATACA-TTTTTAAAATAAA
11716758 TAACATAGTC
Statistics
Matches: 168, Mismatches: 26, Indels: 12
0.82 0.13 0.06
Matches are distributed among these distances:
140 3 0.02
141 38 0.23
142 77 0.46
143 30 0.18
144 20 0.12
ACGTcount: A:0.45, C:0.08, G:0.09, T:0.37
Consensus pattern (141 bp):
TTGAAACTATATTTTAAAATTCTAAAATTTTAACAAAGATACATTTTTAAAATAAAAGATGTAAT
GAATATTCAAGCTATATTTTCAAAATTATGAAATTTTAACAAAAACCATGTTTAAAAATAAAAAA
TGTAATAGATA
Found at i:11717141 original size:18 final size:17
Alignment explanation
Indices: 11717094--11717141 Score: 62
Period size: 16 Copynumber: 2.8 Consensus size: 17
11717084 GAATCACACA
*
11717094 TTTCCCTTCAATATCAC
1 TTTCCCTTCAAAATCAC
*
11717111 TTT-CCTCCAAAATCAC
1 TTTCCCTTCAAAATCAC
11717127 TTTTCCCTTCAAAAT
1 -TTTCCCTTCAAAAT
11717142 TTAAGAATCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 11 0.42
17 6 0.23
18 9 0.35
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.40
Consensus pattern (17 bp):
TTTCCCTTCAAAATCAC
Found at i:11720869 original size:14 final size:14
Alignment explanation
Indices: 11720850--11720876 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
11720840 TGAGTAGCTA
11720850 ATTGTAATCTGTTG
1 ATTGTAATCTGTTG
11720864 ATTGTAATCTGTT
1 ATTGTAATCTGTT
11720877 TATATTTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (14 bp):
ATTGTAATCTGTTG
Found at i:11721162 original size:26 final size:25
Alignment explanation
Indices: 11721115--11721164 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
11721105 GAAGAAAATT
* **
11721115 TTTCAGCCTTCATTGCTGAATTCTA
1 TTTCAGCCTTCATAGCCAAATTCTA
11721140 TTTCAGGCCTTCATAGCCAAATTCT
1 TTTCA-GCCTTCATAGCCAAATTCT
11721165 GTTAAGTCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.22, C:0.26, G:0.12, T:0.40
Consensus pattern (25 bp):
TTTCAGCCTTCATAGCCAAATTCTA
Found at i:11723463 original size:12 final size:12
Alignment explanation
Indices: 11723446--11723471 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11723436 AGACCTCTTT
11723446 TCGCTTGACTTG
1 TCGCTTGACTTG
11723458 TCGCTTGACTTG
1 TCGCTTGACTTG
11723470 TC
1 TC
11723472 CTCCTCCTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.23, T:0.42
Consensus pattern (12 bp):
TCGCTTGACTTG
Found at i:11724597 original size:19 final size:20
Alignment explanation
Indices: 11724554--11724601 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
11724544 AGCTAGGGAG
*
11724554 ATTGAAGTACTTTCTAGAAA
1 ATTGAAGTACTTCCTAGAAA
*
11724574 ATTGAAGTACTTCCTAG-GA
1 ATTGAAGTACTTCCTAGAAA
11724593 ATTGAAGTA
1 ATTGAAGTA
11724602 GCTCACTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 10 0.38
20 16 0.62
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (20 bp):
ATTGAAGTACTTCCTAGAAA
Found at i:11735245 original size:35 final size:35
Alignment explanation
Indices: 11735206--11735276 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
11735196 TAAAAAGAAA
* *
11735206 GAAACATATTGAACGTCTCCATTCTTTGTTTTAAG
1 GAAACACATTGAACATCTCCATTCTTTGTTTTAAG
11735241 GAAACACATTGAACATCTCCATTCTTTGTTTTAAG
1 GAAACACATTGAACATCTCCATTCTTTGTTTTAAG
11735276 G
1 G
11735277 GTGGTTCTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (35 bp):
GAAACACATTGAACATCTCCATTCTTTGTTTTAAG
Found at i:11736372 original size:65 final size:65
Alignment explanation
Indices: 11736288--11736415 Score: 202
Period size: 65 Copynumber: 2.0 Consensus size: 65
11736278 CCTCTGCAAT
* * * * *
11736288 CAAATCTCATGTCATAAGGACTAGAAAAATAAAATAAAGTAAAATTAAAAGTGAAGCTCCAAGAC
1 CAAATCTCACGCCATAAGGACCAGAAAAATAAAATAAAATAAAATAAAAAGTGAAGCTCCAAGAC
*
11736353 CAAATCTCACGCCATAAGGACCAGCAAAATAAAATAAAATAAAATAAAAAGTGAAGCTCCAAG
1 CAAATCTCACGCCATAAGGACCAGAAAAATAAAATAAAATAAAATAAAAAGTGAAGCTCCAAG
11736416 CCTCCGCCAC
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.53, C:0.16, G:0.13, T:0.17
Consensus pattern (65 bp):
CAAATCTCACGCCATAAGGACCAGAAAAATAAAATAAAATAAAATAAAAAGTGAAGCTCCAAGAC
Found at i:11742728 original size:28 final size:28
Alignment explanation
Indices: 11742692--11742827 Score: 164
Period size: 28 Copynumber: 4.8 Consensus size: 28
11742682 ATCATTCAGC
* * * * *
11742692 ATACGATTCAGCATACCAATATCATATA
1 ATACCATTCAGCAAAACAATATCACACA
*
11742720 ATACCATTCGGCAAAACAATATCACACA
1 ATACCATTCAGCAAAACAATATCACACA
* * *
11742748 ATATCATTTAGTAAAACAATATCACACA
1 ATACCATTCAGCAAAACAATATCACACA
11742776 ATACCATTCAGCAAAACAATATCACACA
1 ATACCATTCAGCAAAACAATATCACACA
*
11742804 ATACCATTCAACAAACCACAATAT
1 ATACCATTCAGCAAA--ACAATAT
11742828 TTAAAGAAAA
Statistics
Matches: 92, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
28 85 0.92
30 7 0.08
ACGTcount: A:0.48, C:0.25, G:0.04, T:0.23
Consensus pattern (28 bp):
ATACCATTCAGCAAAACAATATCACACA
Found at i:11744013 original size:240 final size:239
Alignment explanation
Indices: 11743705--11744247 Score: 678
Period size: 240 Copynumber: 2.3 Consensus size: 239
11743695 GAATTGGAAA
* * * * *
11743705 ACGCCTTTAATAATCCCAAACAATTTTGAAAA-GAAATTTATTAAAGGCATTTGTTCTTAAAAAA
1 ACGCCTTGAATAAACCCAAACAATTTTTAAAAGGAAA-TTATTAAAGGCATTTTTTCTCAAAAAA
* * * * * *
11743769 CACCTTTAATAATTTTATATAAAAATAATTGAAGGTGTATTTAGCAAAAAATGCCTTTAATAAAT
65 CACCTTCAATAATTATATACAAAAATAATTGAAGGTGTATTCAGCAAAAAATACCTTCAATAAAT
** * * * * * *
11743834 TTTTTCAAAAATTAGAATGAATCAATGAAGGCATTTTTCT-AGAATAAATGCTTTGACTAACCAT
130 TCATTCAAAAATCAGAATGAATCAATGAAGGCATTTTTATGA-AATAAACGCCTTCAATAACCAT
** *
11743898 CTTGCAATTTTAGTAGTGAAATATTAAAGGTATTTTTTACTAGAAG
194 CTTAAAATTTTAGTAGTGAAATATTAAAGGCATTTTTTACTAGAAG
* * * * *
11743944 ATGCCTTGATTAATTCCTAAACAATTTTTAAAAGGAAATTATTAAAGGCATTTTTTCTCAAGAAA
1 ACGCCTTGAATAA-ACCCAAACAATTTTTAAAAGGAAATTATTAAAGGCATTTTTTCTCAAAAAA
* *
11744009 CACCTTCAATAATTATCTACAAAAATTATTGAAGGTGTATTCAGCAAAAAATACCTTCAATAAAT
65 CACCTTCAATAATTATATACAAAAATAATTGAAGGTGTATTCAGCAAAAAATACCTTCAATAAAT
* * * * *
11744074 TCATTCAAAAATCAGTATGGATTAGTGAAGGCATTTTTATGAAATAAACGCCTTCAATAACTATC
130 TCATTCAAAAATCAGAATGAATCAATGAAGGCATTTTTATGAAATAAACGCCTTCAATAACCATC
* *
11744139 TTAAAATTTTAGTAGTGGAATATTAAAGGCGTTTTTTACTAGAAG
195 TTAAAATTTTAGTAGTGAAATATTAAAGGCATTTTTTACTAGAAG
* * * *
11744184 ACGCCTTTAATAAACCCAAATAA-TTTTAAAAGAAAATTATTGAAGGCATTTTTTCTCAAAAAAC
1 ACGCCTTGAATAAACCCAAACAATTTTTAAAAGGAAATTATTAAAGGCATTTTTTCTCAAAAAAC
11744248 GTCTATAATA
Statistics
Matches: 258, Mismatches: 43, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
238 38 0.15
239 17 0.07
240 198 0.77
241 5 0.02
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (239 bp):
ACGCCTTGAATAAACCCAAACAATTTTTAAAAGGAAATTATTAAAGGCATTTTTTCTCAAAAAAC
ACCTTCAATAATTATATACAAAAATAATTGAAGGTGTATTCAGCAAAAAATACCTTCAATAAATT
CATTCAAAAATCAGAATGAATCAATGAAGGCATTTTTATGAAATAAACGCCTTCAATAACCATCT
TAAAATTTTAGTAGTGAAATATTAAAGGCATTTTTTACTAGAAG
Found at i:11744459 original size:187 final size:187
Alignment explanation
Indices: 11744067--11744462 Score: 480
Period size: 187 Copynumber: 2.1 Consensus size: 187
11744057 AAATACCTTC
* * *
11744067 AATAAATTCATTCAAAAATCAGT-ATGGATTAGTGAAGGCATTTTTATGAAATAAACGCCTTCAA
1 AATAAATTCATTCAAAAATTA-TAATGAATTAGTGAAGGCATTTTTATGAAATAAACGCATTCAA
* * * *
11744131 TAACTATCTTAAAATTTTAGTAGTGGAATATTAAAGGCGTTTTTTACTAGAAGACGCCTTTAATA
65 TAACTATCTTAAAATTGTAATAGTGGAATATTAAAGGCGTTTTCTACTAGAAAACGCCTTTAATA
* * * *
11744196 AACCCAAATAATTTTAAAAGAAAATTATTGAAGGCATTTTTTCTCAAAAAACGTCTAT
130 AACCCAAACAATTTTAAAAGAAAATTATTAAAGGCATTTTCTCTCAAAAAACGCCTAT
* * * *
11744254 AATAAATTCCTTCAAAAATTATAATGAATTAGTGAATGCATTTTTCTTG-AATAAATGCATTCAA
1 AATAAATTCATTCAAAAATTATAATGAATTAGTGAAGGCATTTTT-ATGAAATAAACGCATTCAA
* * *
11744318 TAACTGTTTTAAAATTGTAAT-GCTGGAATATTTAAGGCGTTTTCTACTAGAAAACGCCTTTAAT
65 TAACTATCTTAAAATTGTAATAG-TGGAATATTAAAGGCGTTTTCTACTAGAAAACGCCTTTAAT
* * ** * *
11744382 AATCCCAAGCAATTTTTAAAA-AAAATTATTAAAGGTGTTTTCTCTCAAGAAACGCCTTT
129 AAACCCAAACAA-TTTTAAAAGAAAATTATTAAAGGCATTTTCTCTCAAAAAACGCCTAT
11744441 AAT-AATT-ATGTACAAAAATTAT
1 AATAAATTCAT-T-CAAAAATTAT
11744463 TGAAGGTAAA
Statistics
Matches: 178, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
185 1 0.01
186 7 0.04
187 160 0.90
188 10 0.06
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (187 bp):
AATAAATTCATTCAAAAATTATAATGAATTAGTGAAGGCATTTTTATGAAATAAACGCATTCAAT
AACTATCTTAAAATTGTAATAGTGGAATATTAAAGGCGTTTTCTACTAGAAAACGCCTTTAATAA
ACCCAAACAATTTTAAAAGAAAATTATTAAAGGCATTTTCTCTCAAAAAACGCCTAT
Found at i:11744493 original size:425 final size:426
Alignment explanation
Indices: 11743826--11744651 Score: 1032
Period size: 425 Copynumber: 1.9 Consensus size: 426
11743816 AAAATGCCTT
** * * *
11743826 TAATAAATTTTTTCAAAAATTAGAATGAATCAATGAAGGCATTTTTCTAGAATAAATGCTTTGAC
1 TAATAAATTCCTTCAAAAATTAGAATGAATCAATGAAGGCATTTTTCTAGAATAAATGCATTCAA
** * * * * * * *
11743891 TAACCATCTTGCAATTTTAGTAGTGAAATATTAAAGGTATTTTTTACTAGAAGATGCCTTGATTA
66 TAACCATCTTAAAATTGTAATAGTGAAATATTAAAGGCATTTTCTACTAGAAAACGCCTTGAATA
* * *
11743956 ATTCCTAAACAATTTTTAAAAGGAAATTATTAAAGGCATTTTTTCTCAAGAAACACCTTCAATAA
131 ATTCCCAAACAATTTTTAAAAGAAAATTATTAAAGGCATTTTCTCTCAAGAAACACCTTCAATAA
* * *
11744021 TTATCTACAAAAATTATTGAAGGTGTATTCAGCAAAAAATACCTTCAATAAATTCATTCAAAAAT
196 TTATCTACAAAAATTATTGAAGGTGAAATAAGCAAAAAATACCTTCAATAAATTCATTCAAAAAT
* * * * * *
11744086 CAGTATGGATTAGTGAAGGCATTTTTATGAAATAAACGCCTTCAATAACTATCTTAAAATTTTAG
261 CAGAATGAATTAGTGAAGGCATTTTTATAAAATAAACACATTCAATAACCATCTTAAAA-TTTAG
* * * *
11744151 TAGTGGAATATTAAAGGCGTTTTTTACTAGAAGACGCCTTTAATAAACCCAAATAATTTT-AAAA
325 TAGTGGAATATTAAAGGCATTTTCTACTAAAAGACGCCTTTAATAAACCCAAACAATTTTCAAAA
11744215 GAAAATTATTGAAGGCATTTTTTCTCAAAAAACGTCTA
390 -AAAATTATTGAAGGCATTTTTTCTCAAAAAACGTCTA
* * * * *
11744253 TAATAAATTCCTTCAAAAATTATAATGAATTAGTGAATGCATTTTTCTTGAATAAATGCATTCAA
1 TAATAAATTCCTTCAAAAATTAGAATGAATCAATGAAGGCATTTTTCTAGAATAAATGCATTCAA
** * * * * *
11744318 TAACTGTTTTAAAATTGTAAT-GCTGGAATATTTAAGGCGTTTTCTACTAGAAAACGCCTTTAAT
66 TAACCATCTTAAAATTGTAATAG-TGAAATATTAAAGGCATTTTCTACTAGAAAACGCCTTGAAT
* ** * *
11744382 AA-TCCCAAGCAATTTTTAAAA-AAAATTATTAAAGGTGTTTTCTCTCAAGAAACGCCTTTAATA
130 AATTCCCAAACAATTTTTAAAAGAAAATTATTAAAGGCATTTTCTCTCAAGAAACACCTTCAATA
* *
11744445 ATTATGTACAAAAATTATTGAAGGT-AAATAATGCAAAAAATACCTTCAATAAATTCTTTCAAAA
195 ATTATCTACAAAAATTATTGAAGGTGAAATAA-GCAAAAAATACCTTCAATAAATTCATTCAAAA
* * * * * **
11744509 ATTAGAATGAATTAGTGAAGGCATTTTTCTAAAATAAACATATTCACTAACCGTCTTGTAATTTA
259 ATCAGAATGAATTAGTGAAGGCATTTTTATAAAATAAACACATTCAATAACCATCTTAAAATTTA
* * * *
11744574 GTAGTGGAATATTAAAGGCATTTTCTACTAAAAGATGCCTTTATTAATCTCAAACAATTTTCAAA
324 GTAGTGGAATATTAAAGGCATTTTCTACTAAAAGACGCCTTTAATAAACCCAAACAATTTTCAAA
*
11744639 AAAATTTATTGAA
389 AAAAATTATTGAA
11744652 AGTGTTTTTT
Statistics
Matches: 335, Mismatches: 61, Indels: 9
0.83 0.15 0.02
Matches are distributed among these distances:
424 71 0.21
425 143 0.43
426 18 0.05
427 103 0.31
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.35
Consensus pattern (426 bp):
TAATAAATTCCTTCAAAAATTAGAATGAATCAATGAAGGCATTTTTCTAGAATAAATGCATTCAA
TAACCATCTTAAAATTGTAATAGTGAAATATTAAAGGCATTTTCTACTAGAAAACGCCTTGAATA
ATTCCCAAACAATTTTTAAAAGAAAATTATTAAAGGCATTTTCTCTCAAGAAACACCTTCAATAA
TTATCTACAAAAATTATTGAAGGTGAAATAAGCAAAAAATACCTTCAATAAATTCATTCAAAAAT
CAGAATGAATTAGTGAAGGCATTTTTATAAAATAAACACATTCAATAACCATCTTAAAATTTAGT
AGTGGAATATTAAAGGCATTTTCTACTAAAAGACGCCTTTAATAAACCCAAACAATTTTCAAAAA
AAATTATTGAAGGCATTTTTTCTCAAAAAACGTCTA
Found at i:11744684 original size:237 final size:238
Alignment explanation
Indices: 11744254--11744684 Score: 555
Period size: 237 Copynumber: 1.8 Consensus size: 238
11744244 AAACGTCTAT
* * ** **
11744254 AATAAATTCCTTCAAAAATTATAATGAATTAGTGAATGCATTTTTCTTGAATAAATGCATTCAAT
1 AATAAATTCCTTCAAAAATTAGAATGAATTAGTGAAGGCATTTTTCTAAAATAAACACATTCAAT
* * * *
11744319 AACTGTTTTAAAATTGTAATGCTGGAATATTTAAGGCGTTTTCTACTAGAAAACGCCTTTAATAA
66 AACCGTCTTAAAATTGTAATGCTGGAATATTAAAGGCATTTTCTACTAGAAAACGCCTTTAATAA
* * * *
11744384 TCCCAAGCAATTTTTAAAAAAAATTATTAAAGGTGTTTTCTCTCAAGAAACGCCTTTAATAATTA
131 TCCCAAACAATTTTCAAAAAAAATTATTAAAGGTGTTTTCTCTCAAGAAACACCTTCAATAATTA
11744449 TGTACAAAAATTATTGAAGGTAAATAATGCAAAAAATACCTTC
196 TGTACAAAAATTATTGAAGGTAAATAATGCAAAAAATACCTTC
* * *
11744492 AATAAATTCTTTCAAAAATTAGAATGAATTAGTGAAGGCATTTTTCTAAAATAAACATATTCACT
1 AATAAATTCCTTCAAAAATTAGAATGAATTAGTGAAGGCATTTTTCTAAAATAAACACATTCAAT
** * * *
11744557 AACCGTCTTGTAATT-TAGTAG-TGGAATATTAAAGGCATTTTCTACTA-AAAGATGCCTTTATT
66 AACCGTCTTAAAATTGTAAT-GCTGGAATATTAAAGGCATTTTCTACTAGAAA-ACGCCTTTAAT
* * * * * *
11744619 AATCTCAAACAATTTTCAAAAAAATTTATTGAAA-GTGTTTTTTCTTAGGAAATACCTTCAATAA
129 AATCCCAAACAATTTTCAAAAAAAATTATT-AAAGGTGTTTTCTCTCAAGAAACACCTTCAATAA
11744683 TT
193 TT
11744685 TTCTCTAAGA
Statistics
Matches: 162, Mismatches: 28, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
236 3 0.02
237 88 0.54
238 71 0.44
ACGTcount: A:0.40, C:0.12, G:0.11, T:0.36
Consensus pattern (238 bp):
AATAAATTCCTTCAAAAATTAGAATGAATTAGTGAAGGCATTTTTCTAAAATAAACACATTCAAT
AACCGTCTTAAAATTGTAATGCTGGAATATTAAAGGCATTTTCTACTAGAAAACGCCTTTAATAA
TCCCAAACAATTTTCAAAAAAAATTATTAAAGGTGTTTTCTCTCAAGAAACACCTTCAATAATTA
TGTACAAAAATTATTGAAGGTAAATAATGCAAAAAATACCTTC
Found at i:11746615 original size:35 final size:36
Alignment explanation
Indices: 11746549--11746618 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
11746539 TATTGTTCTA
*
11746549 TTTTAATAGTTTTGATAGTTTCAATACATGATATTG
1 TTTTAATAGTTTTGATAGTATCAATACATGATATTG
11746585 TTTTAATAGTTTTGATAG-ATCAATACATGATATT
1 TTTTAATAGTTTTGATAGTATCAATACATGATATT
11746619 AAACTTATCG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 15 0.45
36 18 0.55
ACGTcount: A:0.33, C:0.06, G:0.13, T:0.49
Consensus pattern (36 bp):
TTTTAATAGTTTTGATAGTATCAATACATGATATTG
Found at i:11748400 original size:31 final size:31
Alignment explanation
Indices: 11748357--11748424 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
11748347 CAAAAATACG
*
11748357 AATGCCACTAATTTAGC-AATATTTTATAGAA
1 AATGCCACTAATTTA-CTAACATTTTATAGAA
* *
11748388 AATGCCATTAATTTACTAGCATTTTATAGAA
1 AATGCCACTAATTTACTAACATTTTATAGAA
11748419 AATGCC
1 AATGCC
11748425 GCTACTTTTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
30 1 0.03
31 32 0.97
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (31 bp):
AATGCCACTAATTTACTAACATTTTATAGAA
Found at i:11748599 original size:7 final size:7
Alignment explanation
Indices: 11748587--11748638 Score: 53
Period size: 6 Copynumber: 8.3 Consensus size: 7
11748577 TCATTACATT
*
11748587 TTATATG
1 TTATATA
11748594 TTATATA
1 TTATATA
11748601 TTAT-TA
1 TTATATA
11748607 TTAT-TA
1 TTATATA
11748613 TTAT-TA
1 TTATATA
11748619 TTAT-TA
1 TTATATA
11748625 TTAT-TA
1 TTATATA
11748631 TTAT-TA
1 TTATATA
11748637 TT
1 TT
11748639 TTATTTAGTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
6 34 0.77
7 10 0.23
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (7 bp):
TTATATA
Found at i:11748607 original size:3 final size:3
Alignment explanation
Indices: 11748594--11748643 Score: 84
Period size: 3 Copynumber: 16.7 Consensus size: 3
11748584 ATTTTATATG
11748594 TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
11748639 TTA TT
1 TTA TT
11748644 TAGTGGCCAA
Statistics
Matches: 45, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
2 2 0.04
3 40 0.89
4 3 0.07
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:11749161 original size:52 final size:52
Alignment explanation
Indices: 11749104--11749473 Score: 188
Period size: 50 Copynumber: 7.4 Consensus size: 52
11749094 ACTTTTAAAA
* * *
11749104 CTTTTTAAAATGAGATTTTTTTTTAAGTTCCTTGCCTATCTTTATCGGAGCC
1 CTTTTCAAAATGAGATTTTTTTTAAAGTTCCTTGCCTATCTTTATAGGAGCC
* * * ** * * * *
11749156 CTTTTTAGATTGAGA--TTTTAAAAAATTCGTTGCTTATCTTTATAAGAGCC
1 CTTTTCAAAATGAGATTTTTTTTAAAGTTCCTTGCCTATCTTTATAGGAGCC
* * *
11749206 CTTTTCAGATTGAGA--TTTTTTAAAGTT-C--G--------T-TAGGAGCT
1 CTTTTCAAAATGAGATTTTTTTTAAAGTTCCTTGCCTATCTTTATAGGAGCC
* * ** * * *
11749244 CTTTTTAAATTGAGATTTTTTTTTAAAAGTTTGTTACCTATCTTCATGGGAG-C
1 CTTTTCAAAATGAGA-TTTTTTTT-AAAGTTCCTTGCCTATCTTTATAGGAGCC
* * ** ** * *
11749297 CTTTGTCAAATTGAAATTTTTTAAAAAGTTTGTTGCCTACCTTTATAGGAACC
1 CTTT-TCAAAATGAGATTTTTTTTAAAGTTCCTTGCCTATCTTTATAGGAGCC
* * * **
11749350 CTTTTCAAAATGAGATTTTTTTCAAAAAGTTCTTTACCTATCTTCGTAGGAGCC
1 CTTTTCAAAATGAGATTTTTTT--TAAAGTTCCTTGCCTATCTTTATAGGAGCC
* * * * *
11749404 CTTTTAAAAATGACA--TTTTTT-AAGTTTCTTACCTATCTTTATAGGA-AC
1 CTTTTCAAAATGAGATTTTTTTTAAAGTTCCTTGCCTATCTTTATAGGAGCC
11749452 CTTTTCAAAATGAGATTTTTTT
1 CTTTTCAAAATGAGATTTTTTT
11749474 AAAAAAAAAT
Statistics
Matches: 243, Mismatches: 53, Indels: 46
0.71 0.15 0.13
Matches are distributed among these distances:
38 19 0.08
39 1 0.00
41 6 0.02
42 6 0.02
47 1 0.00
48 14 0.06
49 21 0.09
50 55 0.23
52 55 0.23
53 15 0.06
54 50 0.21
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (52 bp):
CTTTTCAAAATGAGATTTTTTTTAAAGTTCCTTGCCTATCTTTATAGGAGCC
Found at i:11749369 original size:106 final size:102
Alignment explanation
Indices: 11749244--11749479 Score: 287
Period size: 106 Copynumber: 2.3 Consensus size: 102
11749234 GTTAGGAGCT
* * ** * *
11749244 CTTTTTAAATTGAGATTTTTTTTTAAAAGTT-TGTTACCTATCTTCATGGGAG-CCTTTGTCAAA
1 CTTTTCAAAATGAGATTTTTTTCAAAAAGTTCT-TTACCTATCTTCATAGGAGCCCTTT-TAAAA
* * *
11749307 TTGAAATTTTTTAAAAAGTTTGTTGCCTACCTTTATAGGAACC
64 ATGAAATTTTTT---AAGTTTCTTACCTACCTTTATAGGAA-C
*
11749350 CTTTTCAAAATGAGATTTTTTTCAAAAAGTTCTTTACCTATCTTCGTAGGAGCCCTTTTAAAAAT
1 CTTTTCAAAATGAGATTTTTTTCAAAAAGTTCTTTACCTATCTTCATAGGAGCCCTTTTAAAAAT
* *
11749415 GACATTTTTTAAGTTTCTTACCTATCTTTATAGGAAC
66 GAAATTTTTTAAGTTTCTTACCTACCTTTATAGGAAC
*
11749452 CTTTTCAAAATGAGATTTTTTTAAAAAA
1 CTTTTCAAAATGAGATTTTTTTCAAAAA
11749480 AAATTCCCTA
Statistics
Matches: 115, Mismatches: 13, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
102 28 0.24
103 23 0.20
106 58 0.50
107 6 0.05
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (102 bp):
CTTTTCAAAATGAGATTTTTTTCAAAAAGTTCTTTACCTATCTTCATAGGAGCCCTTTTAAAAAT
GAAATTTTTTAAGTTTCTTACCTACCTTTATAGGAAC
Found at i:11749378 original size:54 final size:53
Alignment explanation
Indices: 11749244--11749478 Score: 234
Period size: 54 Copynumber: 4.5 Consensus size: 53
11749234 GTTAGGAGCT
* * * * *
11749244 CTTTTTAAATTGAGATTTTTTTTTAAAAGTTTGTTACCTATCTTCAT-GGGAGC
1 CTTTTCAAAATGAGA-TTTTTTTAAAAAGTTTGTTACCTATCTTCATAGGAACC
* * * * *
11749297 CTTTGTCAAATTGA-AATTTTTTAAAAAGTTTGTTGCCTACCTTTATAGGAACC
1 CTTT-TCAAAATGAGATTTTTTTAAAAAGTTTGTTACCTATCTTCATAGGAACC
* *
11749350 CTTTTCAAAATGAGATTTTTTTCAAAAAGTTCT-TTACCTATCTTCGTAGGAGCC
1 CTTTTCAAAATGAGATTTTTTT-AAAAAGTT-TGTTACCTATCTTCATAGGAACC
* * * *
11749404 CTTTTAAAAATGACA-TTTTTT---AAGTTTCTTACCTATCTTTATAGGAA-C
1 CTTTTCAAAATGAGATTTTTTTAAAAAGTTTGTTACCTATCTTCATAGGAACC
11749452 CTTTTCAAAATGAGATTTTTTTAAAAA
1 CTTTTCAAAATGAGATTTTTTTAAAAA
11749479 AAAATTCCCT
Statistics
Matches: 150, Mismatches: 22, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
48 15 0.10
49 27 0.18
52 36 0.24
53 26 0.17
54 45 0.30
55 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.12, T:0.44
Consensus pattern (53 bp):
CTTTTCAAAATGAGATTTTTTTAAAAAGTTTGTTACCTATCTTCATAGGAACC
Found at i:11752887 original size:15 final size:16
Alignment explanation
Indices: 11752847--11752888 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
11752837 TTTTCCCCAC
*
11752847 ATTTTTAAGTTATATT
1 ATTTTTAACTTATATT
*
11752863 TTTTTATAACTT-TATT
1 ATTTT-TAACTTATATT
11752879 ATTTTTAACT
1 ATTTTTAACT
11752889 GTAATTTGGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
15 5 0.23
16 12 0.55
17 5 0.23
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (16 bp):
ATTTTTAACTTATATT
Found at i:11753279 original size:196 final size:197
Alignment explanation
Indices: 11752908--11753284 Score: 432
Period size: 196 Copynumber: 1.9 Consensus size: 197
11752898 ACAAGAATAC
* * * *
11752908 AATTATTTTTATTGAAATTTCGTCTAAATAGTTCTACCATTTGGGTAAAATTTAAAAAAATTCCT
1 AATTATTATTATTGAAATTTCATCTAAATACTCCTACCATTTGGGTAAAATTTAAAAAAATTCCT
* * * *
11752973 TACCTAGAGATTTCTTATAAAATTTACCATTTGAAATTTCTAAGAATCTCATCATTGGGTAATTA
66 CACCTAGAGATTTCTTATAAAATTAACCATTTGAAATTTCTAAAAATCTCATCATTGGATAATTA
* **
11753038 GTATTTTAATTCCAAAATTTTATTAAATTTGTGCTTTTTTATTTTTTAAAAATTGAAAACAAATA
131 GTATTTTAATTCAAAAAAATTATTAAATTTGTGCTTTTTTATTTTTTAAAAATTGAAAACAAATA
11753103 TT
196 TT
* *
11753105 AATTATTATTATTGAAACTTT-ATCTAAATTCTCCT-CCATTTGGG-ATAAATTTAAAAAAATTT
1 AATTATTATTATTGAAA-TTTCATCTAAATACTCCTACCATTTGGGTA-AAATTTAAAAAAATTC
* * *
11753167 CTCACCTAGTA-A-TT-TTATGGAAATTAACCATTTGTAATTTCTAAAAATC-CATTATTGGATA
64 CTCACCTAG-AGATTTCTTAT-AAAATTAACCATTTGAAATTTCTAAAAATCTCATCATTGGATA
* **
11753228 ATTATTA-TTT-ATTCTAAAAAAAATTATTAATATTT-TATTTTTTTCTATTTTTTAAAA
127 ATTAGTATTTTAATTC--AAAAAAATTATTAA-ATTTGT-GCTTTTT-TATTTTTTAAAA
11753285 TTTTCTTCTC
Statistics
Matches: 152, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
192 4 0.03
193 3 0.02
194 32 0.21
195 38 0.25
196 45 0.30
197 27 0.18
198 3 0.02
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.46
Consensus pattern (197 bp):
AATTATTATTATTGAAATTTCATCTAAATACTCCTACCATTTGGGTAAAATTTAAAAAAATTCCT
CACCTAGAGATTTCTTATAAAATTAACCATTTGAAATTTCTAAAAATCTCATCATTGGATAATTA
GTATTTTAATTCAAAAAAATTATTAAATTTGTGCTTTTTTATTTTTTAAAAATTGAAAACAAATA
TT
Found at i:11753361 original size:5 final size:5
Alignment explanation
Indices: 11753351--11753377 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
11753341 TAAACAAACT
11753351 AAATA AAATA AAATA AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AA
11753378 TACCAAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATA
Found at i:11754197 original size:19 final size:18
Alignment explanation
Indices: 11754169--11754204 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
11754159 CTTGATTTTC
*
11754169 TTTTTCATTTTTTTATTA
1 TTTTTCATTTATTTATTA
11754187 TTTTATCATTTATTTATT
1 TTTT-TCATTTATTTATT
11754205 TAACAAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.19, C:0.06, G:0.00, T:0.75
Consensus pattern (18 bp):
TTTTTCATTTATTTATTA
Found at i:11757677 original size:12 final size:12
Alignment explanation
Indices: 11757660--11757718 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
11757650 TGTTTATTTC
11757660 TTATTTATTTTT
1 TTATTTATTTTT
*
11757672 TTATTTGTTTATT
1 TTATTTATTT-TT
**
11757685 TTATTTATTTGA
1 TTATTTATTTTT
* **
11757697 CTATTTATGATT
1 TTATTTATTTTT
11757709 TTATTTATTT
1 TTATTTATTT
11757719 ATAAACATTT
Statistics
Matches: 34, Mismatches: 12, Indels: 2
0.71 0.25 0.04
Matches are distributed among these distances:
12 23 0.68
13 11 0.32
ACGTcount: A:0.20, C:0.02, G:0.05, T:0.73
Consensus pattern (12 bp):
TTATTTATTTTT
Found at i:11757693 original size:17 final size:16
Alignment explanation
Indices: 11757663--11757695 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
11757653 TTATTTCTTA
11757663 TTTATTTTTTTATTTG
1 TTTATTTTTTTATTTG
11757679 TTTATTTTATTTATTTG
1 TTTATTTT-TTTATTTG
11757696 ACTATTTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (16 bp):
TTTATTTTTTTATTTG
Found at i:11762264 original size:10 final size:9
Alignment explanation
Indices: 11762168--11762263 Score: 108
Period size: 9 Copynumber: 10.8 Consensus size: 9
11762158 GGATGAAGTA
11762168 AAAAAAATG
1 AAAAAAATG
11762177 --AAAAATG
1 AAAAAAATG
11762184 AAAAAAATG
1 AAAAAAATG
11762193 AAAAAAATG
1 AAAAAAATG
11762202 AAAAAAATG
1 AAAAAAATG
* *
11762211 AAAGAAGTG
1 AAAAAAATG
**
11762220 -AAAATGTG
1 AAAAAAATG
11762228 AAAAAAAATG
1 -AAAAAAATG
*
11762238 CAAAAAATG
1 AAAAAAATG
11762247 CAAAAAAATG
1 -AAAAAAATG
11762257 AAAAAAA
1 AAAAAAA
11762264 AAGAGAGAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
7 7 0.09
8 6 0.08
9 47 0.64
10 14 0.19
ACGTcount: A:0.73, C:0.02, G:0.14, T:0.11
Consensus pattern (9 bp):
AAAAAAATG
Found at i:11763418 original size:21 final size:21
Alignment explanation
Indices: 11763394--11763445 Score: 95
Period size: 21 Copynumber: 2.5 Consensus size: 21
11763384 TAATAATGCA
11763394 AATCTTTAAGTTTTAAATGAG
1 AATCTTTAAGTTTTAAATGAG
11763415 AATCTTTAAGTTTTAAATGAG
1 AATCTTTAAGTTTTAAATGAG
*
11763436 AATTTTTAAG
1 AATCTTTAAG
11763446 AAATTTTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (21 bp):
AATCTTTAAGTTTTAAATGAG
Found at i:11763477 original size:14 final size:14
Alignment explanation
Indices: 11763460--11763501 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
11763450 TTTAAAAGAG
11763460 AAATGAGAATCTTT
1 AAATGAGAATCTTT
*
11763474 AAATGAGAATCTTG
1 AAATGAGAATCTTT
* *
11763488 GAACGAGAATCTTT
1 AAATGAGAATCTTT
11763502 GTCTTTAAGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.19, T:0.31
Consensus pattern (14 bp):
AAATGAGAATCTTT
Found at i:11764123 original size:16 final size:16
Alignment explanation
Indices: 11764027--11764129 Score: 50
Period size: 16 Copynumber: 6.5 Consensus size: 16
11764017 GCAAACCTAA
* *
11764027 AAATTTTTAAGAATCT
1 AAATTCTTATGAATCT
* * * *
11764043 GAGTTCTTACGAATTT
1 AAATTCTTATGAATCT
11764059 AAATT-TTGAT-AATC-
1 AAATTCTT-ATGAATCT
** *
11764073 AAATTCTTGCGAAACT
1 AAATTCTTATGAATCT
* * * *
11764089 AAAATCTTGTCAATTT
1 AAATTCTTATGAATCT
11764105 AAATTCTTATGAATCT
1 AAATTCTTATGAATCT
11764121 AAAATTCTT
1 -AAATTCTT
11764130 GCGAATCTTT
Statistics
Matches: 61, Mismatches: 21, Indels: 9
0.67 0.23 0.10
Matches are distributed among these distances:
14 5 0.08
15 10 0.16
16 38 0.62
17 8 0.13
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (16 bp):
AAATTCTTATGAATCT
Found at i:11764316 original size:17 final size:18
Alignment explanation
Indices: 11764269--11764318 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
11764259 ACTTTGGAAT
* *
11764269 TCTTTGTGAATCTTAGAA
1 TCTTTATGAATCTTTGAA
11764287 TCTTTAT-AGATCTTTG-A
1 TCTTTATGA-ATCTTTGAA
11764304 TCTTTATGAATCTTT
1 TCTTTATGAATCTTT
11764319 ACAATTATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (18 bp):
TCTTTATGAATCTTTGAA
Found at i:11764548 original size:21 final size:21
Alignment explanation
Indices: 11764518--11764610 Score: 77
Period size: 21 Copynumber: 4.5 Consensus size: 21
11764508 GTTTAGTAAG
*
11764518 TCTTTAAATTCAAATTGAGAA
1 TCTTTGAATTCAAATTGAGAA
*
11764539 TCTTTGAATT-TAATTGCA-AA
1 TCTTTGAATTCAAATTG-AGAA
* *
11764559 TCTTTGAGATTCAAGTTGGGAA
1 TCTTTGA-ATTCAAATTGAGAA
* *
11764581 TCCTTGAATTTC-AATTGTGAA
1 TCTTTGAA-TTCAAATTGAGAA
11764602 T-TTTGAATT
1 TCTTTGAATT
11764611 TTTATTGTAG
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
19 2 0.03
20 19 0.33
21 22 0.38
22 15 0.26
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.43
Consensus pattern (21 bp):
TCTTTGAATTCAAATTGAGAA
Found at i:11764560 original size:20 final size:20
Alignment explanation
Indices: 11764530--11764611 Score: 76
Period size: 20 Copynumber: 4.0 Consensus size: 20
11764520 TTTAAATTCA
*
11764530 AATTGAGAATCTTTGAATTT
1 AATTGCGAATCTTTGAATTT
* *
11764550 AATTGCAAATCTTTGAGATTC
1 AATTGCGAATCTTTGA-ATTT
* *
11764571 AAGTTGGGAATCCTTGAATTT
1 AA-TTGCGAATCTTTGAATTT
*
11764592 CAATTGTGAAT-TTTGAATTT
1 -AATTGCGAATCTTTGAATTT
11764612 TTATTGTAGA
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
20 22 0.44
21 15 0.30
22 13 0.26
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.43
Consensus pattern (20 bp):
AATTGCGAATCTTTGAATTT
Found at i:11765570 original size:8 final size:8
Alignment explanation
Indices: 11765557--11765591 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
11765547 TAATTGTCTA
11765557 TTTTTTAT
1 TTTTTTAT
11765565 TTTTTTAT
1 TTTTTTAT
*
11765573 TTGTTTAT
1 TTTTTTAT
11765581 TTTATTTAT
1 TTT-TTTAT
11765590 TT
1 TT
11765592 GACTCTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (8 bp):
TTTTTTAT
Found at i:11765985 original size:43 final size:42
Alignment explanation
Indices: 11765911--11765992 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
11765901 TCAATAAAGC
* * *
11765911 CTTACCAACATGTTGGAAGATAATTTGATTTTTAAGATAAGGT
1 CTTACCAACATATTGGAAAATAATTTAATTTTTAA-ATAAGGT
*
11765954 CTTACCAACATATTGGAAAAT-CTTATAATTTTTAAATAA
1 CTTACCAACATATTGGAAAATAATT-TAATTTTTAAATAA
11765993 AACTTAATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 6 0.18
43 28 0.82
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (42 bp):
CTTACCAACATATTGGAAAATAATTTAATTTTTAAATAAGGT
Found at i:11768942 original size:10 final size:10
Alignment explanation
Indices: 11768927--11768953 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
11768917 AGTTGACTTG
11768927 TTAGTTATAA
1 TTAGTTATAA
11768937 TTAGTTATAA
1 TTAGTTATAA
11768947 TTAGTTA
1 TTAGTTA
11768954 ATTCGGTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (10 bp):
TTAGTTATAA
Found at i:11773509 original size:161 final size:160
Alignment explanation
Indices: 11773330--11774606 Score: 1337
Period size: 161 Copynumber: 7.9 Consensus size: 160
11773320 CATTAATATC
* * * * *
11773330 ATCCAAACTATTAAAATAGAACAATAACAACAAATTGCATTTTTTTCCTTTTAATC-ACACAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTGCA-TTTTTGCCTTTTAA-CGGCACAAAA
* * * * * * * *
11773394 AATTTTAAACAAAGGTAAATAGTAATTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCA
64 AGTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCA
* * *
11773459 TTCAGACAAATTTAATATCATGTATTAAAGTT
129 TTTAGACAAGTTTAATATCATGTATTAAAGCT
* ** *
11773491 ATCCAAACTGTTAAAATAGCACAATAATAGCATTTTTGCATTTTTGGCTTTTAACGGCACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCA-AATTGCATTTTTGCCTTTTAACGGCACAAAAA
* * * * *
11773556 GTCTTAAACAAATGTAAACAATAACTTTTTCACATATTTCAATTGTGGAAACCAAATTCAATCAT
65 GTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* *
11773621 TTAGACAAGTTTAATATCATGTATTGAAGCC
130 TTAGACAAGTTTAATATCATGTATTAAAGCT
* ***
11773652 ATCCAAACTGTTAAAATAGAACAATAATAGCAATTTTGCATTTTTGCCTTTTAACAATACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAA-ATTGCATTTTTGCCTTTTAACGGCACAAAAA
* * * * * *
11773717 ATCTTAAACAAAGGTAAACAACAACTTTTTCACGCATATTAACTGTGGAAACCAAGTTCAATCAT
65 GTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* *
11773782 TTAAACAAGTTTAATATCATGTATTGAAGCT
130 TTAGACAAGTTTAATATCATGTATTAAAGCT
* * * ** * ** * * *
11773813 GTCCAAACTATTCAAATATCACAATAACAATAATTTTGTATTTTTACCTTTTAACGGCACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAA-ATTGCATTTTTGCCTTTTAACGGCACAAAAA
* * * * *
11773878 GTCTTAAATAGATGTAAGCGATAACTTTTTCATACATATCAATTGTGGAAACCAAGTTCAATCAT
65 GTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* * *
11773943 TCAGGCAAGTTTAATATCATATATTGAAA-CT
130 TTAGACAAGTTTAATATCATGTATT-AAAGCT
* * * * * *
11773974 ATCAAAATTGTTAAAACAAAACAACAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAA-TTGCATTTTTGCCTTTTAACGGCACAAAAA
* * * * * *
11774039 GTCCTAAATAGATATAAACAACAACTCTTTCATACATATCAA-TCGTGGAAACCAAGTTC-ATCA
65 GTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACT-GTGGAAACCAAGTTCAATCA
* *
11774102 TTTGGACAAGTTTAATATCATGTATTGAAGCT
129 TTTAGACAAGTTTAATATCATGTATTAAAGCT
* * * *
11774134 ATCCAAACTGTTAAAATAGCACAATAATAG-TAATTTCACTTTTTTGCCTTTTAACGGCATAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTGCA--TTTTTGCCTTTTAACGGCACAAAA
* * * * *
11774198 AGTCTTAAACATATGTAAATAGT-AGTTTTCTCATACATATCAACTGTGGAAACCAAGTTCAATC
64 AGTCTTAAACAGATGTAAACAATAACTTTT-TCACACATATCAACTGTGGAAACCAAGTTCAATC
* * *
11774262 ATTTAGACATGTTTTATATCATGTATTTAAGCT
128 ATTTAGACAAGTTTAATATCATGTATTAAAGCT
* * *
11774295 ATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCATTTTTGCCTTTTAAAGGCATAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAA-TTGCATTTTTGCCTTTTAACGGCACAAAAA
* ** * * * * *
11774360 GTCCTAAACAGACATAAACAACAACTTTTTCACATATATCAACTATGAAAACCAAGTTCAATTAT
65 GTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCAT
* * *
11774425 TCAGATAAGTTTAATATCAGGTATTGAAA-CT
130 TTAGACAAGTTTAATATCATGTATT-AAAGCT
* * * *
11774456 ATCAAAACTGTTAAAATAGAACAATAATTGTAAATTTGCATTTTTGTCTTTTAACGGCACAAAAA
1 ATCCAAACTGTTAAAATAGAACAATAATAGCAAA-TTGCATTTTTGCCTTTTAACGGCACAAAAA
* * ** *** * **
11774521 GTTTTAAATAGACATAAATTGTAACTTTTTCACACATATCAA-TAATAAAAACCAAGTTCAATCA
65 GTCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACT-GTGGAAACCAAGTTCAATCA
* *
11774585 TTTGGATAAGTTTAATATCATG
129 TTTAGACAAGTTTAATATCATG
11774607 AACTTACTTT
Statistics
Matches: 936, Mismatches: 163, Indels: 34
0.83 0.14 0.03
Matches are distributed among these distances:
158 4 0.00
159 8 0.01
160 123 0.13
161 781 0.83
162 16 0.02
163 4 0.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (160 bp):
ATCCAAACTGTTAAAATAGAACAATAATAGCAAATTGCATTTTTGCCTTTTAACGGCACAAAAAG
TCTTAAACAGATGTAAACAATAACTTTTTCACACATATCAACTGTGGAAACCAAGTTCAATCATT
TAGACAAGTTTAATATCATGTATTAAAGCT
Found at i:11773922 original size:322 final size:321
Alignment explanation
Indices: 11773329--11774606 Score: 1474
Period size: 322 Copynumber: 4.0 Consensus size: 321
11773319 TCATTAATAT
* * *
11773329 CATCCAAACTATTAAAATAGAACAATAACAACAAA-TTGCATTTTTTTCCTTTTAATC-ACACAA
1 CATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCA-TTTTTGCCTTTTAA-CAACACAA
** * * ** *
11773392 AAAATTTTAAACAAAGGTAAATAGTAATTTTTTCACACATATCAACTATGGAAACCAAGTTCAAT
64 AAAATCCTAAACAAAGATAAACAACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAAT
* * * *
11773457 CATTCAGACAAATTTAATATCATGTATTAAAGTTATCCAAACTGTTAAAATAGCACAATAATAGC
129 CATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCACAATAATAGT
* * * *
11773522 ATTTTTGCATTTTTGGCTTTTAACGGCACAAAAAGTCTTAAACAAATGTAAACAATAACTTTTTC
194 AATTTTGCATTTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAGATGT-AACGATAACTTTTTC
* * *
11773587 ACATATTTCAATTGTGGAAACCAAATTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGC
258 ACACATATCAATTGTGGAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGC
* * *
11773651 CATCCAAACTGTTAAAATAGAACAATAATAGCAATTTTGCATTTTTGCCTTTTAACAATACAAAA
1 CATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCATTTTTGCCTTTTAACAACACAAAA
* * * * *
11773716 AATCTTAAACAAAGGTAAACAACAACTTTTTCACGCATATTAACTGTGGAAACCAAGTTCAATCA
66 AATCCTAAACAAAGATAAACAACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCA
* * * * * * * *
11773781 TTTAAACAAGTTTAATATCATGTATTGAAGCTGTCCAAACTATTCAAATATCACAATAACAATAA
131 TTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCACAATAATAGTAA
* * * *
11773846 TTTTGTATTTTTACCTTTTAACGGCACAAAAAGTCTTAAATAGATGTAAGCGATAACTTTTTCAT
196 TTTTGCATTTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAGATGTAA-CGATAACTTTTTCAC
* * * *
11773911 ACATATCAATTGTGGAAACCAAGTTCAATCATTCAGGCAAGTTTAATATCATATATTGAAAC
260 ACATATCAATTGTGGAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGC
* * * * * * * ** *
11773973 TATCAAAATTGTTAAAACAAAACAACAATAGCAAATTTGCATTTTTGCCTTTTAACGGCATAAAA
1 CATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCATTTTTGCCTTTTAACAACACAAAA
* * * * * * *
11774038 AGTCCTAAATAGATATAAACAACAACTCTTTCATACATATCAA-TCGTGGAAACCAAGTTC-ATC
66 AATCCTAAACAAAGATAAACAACAACTTTTTCACACATATCAACT-ATGGAAACCAAGTTCAATC
**
11774101 ATTTGGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCACAATAATAGTA
130 ATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCACAATAATAGTA
** * * * *
11774166 ATTTCACTTTTTTGCCTTTTAACGGCATAAAAAGTCTTAAACATATGTAA--ATAGTAGTTTTCT
195 ATTTTGCATTTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAGATGTAACGATA--ACTTTT-T
* * * * *
11774229 CATACATATCAACTGTGGAAACCAAGTTCAATCATTTAGACATGTTTTATATCATGTATTTAAGC
257 CACACATATCAATTGTGGAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGC
* * *
11774294 TATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCATTTTTGCCTTTTAA-AGGCATAAA
1 CATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCATTTTTGCCTTTTAACA-ACACAAA
* * * * * *
11774358 AAGTCCTAAACAGACATAAACAACAACTTTTTCACATATATCAACTATGAAAACCAAGTTCAATT
65 AAATCCTAAACAAAGATAAACAACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATC
* * * * * *
11774423 ATTCAGATAAGTTTAATATCAGGTATTGAAACTATCAAAACTGTTAAAATAGAACAATAATTGTA
130 ATTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCACAATAATAGTA
* * * * ** *
11774488 AATTTGCATTTTTGTCTTTTAACGGCACAAAAAGTTTTAAATAGACATAAATTG-TAACTTTTTC
195 ATTTTGCATTTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAGATGT-AA-CGATAACTTTTTC
** ** * *
11774552 ACACATATCAATAATAAAAACCAAGTTCAATCATTTGGATAAGTTTAATATCATG
258 ACACATATCAATTGTGGAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATG
11774607 AACTTACTTT
Statistics
Matches: 810, Mismatches: 132, Indels: 28
0.84 0.14 0.03
Matches are distributed among these distances:
318 3 0.00
320 5 0.01
321 272 0.34
322 516 0.64
323 12 0.01
325 2 0.00
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (321 bp):
CATCCAAACTGTTAAAATAGAACAATAACAGCAAATTTGCATTTTTGCCTTTTAACAACACAAAA
AATCCTAAACAAAGATAAACAACAACTTTTTCACACATATCAACTATGGAAACCAAGTTCAATCA
TTCAGACAAGTTTAATATCATGTATTGAAGCTATCCAAACTGTTAAAATAGCACAATAATAGTAA
TTTTGCATTTTTGCCTTTTAACGGCACAAAAAGTCTTAAACAGATGTAACGATAACTTTTTCACA
CATATCAATTGTGGAAACCAAGTTCAATCATTTAGACAAGTTTAATATCATGTATTGAAGC
Found at i:11780505 original size:34 final size:34
Alignment explanation
Indices: 11780462--11780532 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
11780452 GGTAAAAATG
* * * *
11780462 CAACAAATCATATAGGAAGTTTAGGGATTTGACC
1 CAACAAATCAGACAAGAAGTTTAGAGATTTGACC
11780496 CAACAAATCAGACAAGAAGTTTAGAGATTTGACC
1 CAACAAATCAGACAAGAAGTTTAGAGATTTGACC
11780530 CAA
1 CAA
11780533 AATGCAAGAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (34 bp):
CAACAAATCAGACAAGAAGTTTAGAGATTTGACC
Done.