Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 58 of 133
Found at i:12041512 original size:122 final size:117
Alignment explanation
Indices: 12041229--12041549 Score: 319
Period size: 121 Copynumber: 2.6 Consensus size: 117
12041219 TTTATCCTTT
* * *
12041229 TCAATATTATAAAATAACTATTTTATCTTTTAATTAAATAAAATAAATTAAAATATTAATAATAA
1 TCAATATTATAAAATAAC-ATTTTATCATTTAATAAAATAAAATAACTTAAAATA-TAAT-ATAA
*
12041294 AAAA-TAAAAA-ATATATTAAAAGAATTTCCAAAGAGATTATACTTTGACACATG
63 AAAATTAAAAATATATATTAAAAGAATTCCCAAAGAGATTATACTTTGACACATG
* *
12041347 TCTAACATTATAAAAATAACCATTTTATCATTTAATCAAAATAAAATAACTTAAAATGCTAATGA
1 TC-AATATTAT-AAAATAA-CATTTTATCATTTAAT-AAAATAAAATAACTTAAAAT-ATAAT-A
* * * * *
12041412 TAAAAAATTTAAAAATATATGTTAAAA-ACTTCCCAAAGTGGTTATATTTTGACACCTATG
60 TAAAAAA-TTAAAAATATATATTAAAAGAATTCCCAAAGAGATTATACTTTGACA-C-ATG
* * * * *
12041472 -CAATATTATAAAATGATCATTTTACCCTTCAATGAAAATAAAATAACCTAAAATATAA-ATAAT
1 TCAATATTATAAAAT-AACATTTTATCATTTAAT-AAAATAAAATAACTTAAAATATAATAT-A-
12041535 AAAAATTAAAAATAT
62 AAAAATTAAAAATAT
12041550 GAAAACAAAA
Statistics
Matches: 170, Mismatches: 20, Indels: 24
0.79 0.09 0.11
Matches are distributed among these distances:
118 2 0.01
119 9 0.05
120 32 0.19
121 39 0.23
122 37 0.22
123 36 0.21
124 12 0.07
125 3 0.02
ACGTcount: A:0.52, C:0.10, G:0.05, T:0.34
Consensus pattern (117 bp):
TCAATATTATAAAATAACATTTTATCATTTAATAAAATAAAATAACTTAAAATATAATATAAAAA
ATTAAAAATATATATTAAAAGAATTCCCAAAGAGATTATACTTTGACACATG
Found at i:12044296 original size:13 final size:13
Alignment explanation
Indices: 12044278--12044325 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
12044268 TAATCCAATA
12044278 AAATACAATAATC
1 AAATACAATAATC
*
12044291 AAATACAAAATTTAATA
1 AAATAC--AA--TAATC
12044308 AAATACAATAATC
1 AAATACAATAATC
12044321 AAATA
1 AAATA
12044326 ATCACAATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 15 0.52
15 4 0.14
17 10 0.34
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (13 bp):
AAATACAATAATC
Found at i:12045504 original size:43 final size:43
Alignment explanation
Indices: 12045449--12045803 Score: 261
Period size: 44 Copynumber: 8.1 Consensus size: 43
12045439 TTTAAGTAAC
* * *
12045449 ATAAAAGGCTCCTCTAAATAGAGGCTCAATAACTTTTAAAAAT
1 ATAAAAAGCTCATCTCAATAGAGGCTCAATAACTTTTAAAAAT
* * * * ** *
12045492 ATAAAAAACTCCTCTAAACAGAGATTTAATAACTTTTGAAAAAT
1 ATAAAAAGCTCATCTCAATAGAGGCTCAATAACTTTT-AAAAAT
* * * * *
12045536 ATAAAAAGCTCTTCTC-ATCAGAGGCTTAACAAATTTAAAAAAT
1 ATAAAAAGCTCATCTCAAT-AGAGGCTCAATAACTTTTAAAAAT
* * * **
12045579 ATAAAATA-CTTAT-TTAATTAGAGGCTCAACAAC-TTTGCAAAT
1 ATAAAA-AGCTCATCTCAA-TAGAGGCTCAATAACTTTTAAAAAT
* * * *
12045621 TTAAAAAAGCTCATCTCAATAGAGGCTTAACAACTTTTAGAAAAC
1 AT-AAAAAGCTCATCTCAATAGAGGCTCAATAACTTTTA-AAAAT
* *
12045666 ATAAAAAGCTTATCTCAAT-GAAGGTTCAATAACTTTTGAAAAAT
1 ATAAAAAGCTCATCTCAATAG-AGGCTCAATAACTTTT-AAAAAT
* * * * * *
12045710 ATAAAAGGCTCATTTCAACAAAGGCTCAATAAGTTTAAAAAAAT
1 ATAAAAAGCTCATCTCAATAGAGGCTCAATAACTTT-TAAAAAT
* *
12045754 ATATAAAAGGCTCCTTTCAATAGAGGCTCAATAACTTTTAAAAAT
1 ATA-AAAA-GCTCATCTCAATAGAGGCTCAATAACTTTTAAAAAT
*
12045799 TTAAA
1 ATAAA
12045804 CATCTTGCTC
Statistics
Matches: 245, Mismatches: 51, Indels: 31
0.75 0.16 0.09
Matches are distributed among these distances:
42 9 0.04
43 83 0.34
44 112 0.46
45 16 0.07
46 25 0.10
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (43 bp):
ATAAAAAGCTCATCTCAATAGAGGCTCAATAACTTTTAAAAAT
Found at i:12045558 original size:44 final size:43
Alignment explanation
Indices: 12045457--12045584 Score: 139
Period size: 43 Copynumber: 3.0 Consensus size: 43
12045447 ACATAAAAGG
* * *
12045457 CTCCTCTAAATAGAGGCTCAATAACTTTTAAAAATATAAAAAA
1 CTCCTCTAAACAGAGACTTAATAACTTTTAAAAATATAAAAAA
* *
12045500 CTCCTCTAAACAGAGATTTAATAACTTTTGAAAAATATAAAAAG
1 CTCCTCTAAACAGAGACTTAATAACTTTT-AAAAATATAAAAAA
* * * * * * *
12045544 CTCTTCTCATCAGAGGCTTAACAAATTTAAAAAATATAAAA
1 CTCCTCTAAACAGAGACTTAATAACTTTTAAAAATATAAAA
12045585 TACTTATTTA
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
43 37 0.52
44 34 0.48
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.29
Consensus pattern (43 bp):
CTCCTCTAAACAGAGACTTAATAACTTTTAAAAATATAAAAAA
Found at i:12045613 original size:87 final size:87
Alignment explanation
Indices: 12045519--12045803 Score: 253
Period size: 87 Copynumber: 3.3 Consensus size: 87
12045509 ACAGAGATTT
12045519 AATAACTTTTGAAAAATATAAAAAGCTCTTCTCATCAGAGGCTTAACAAATTTAAAAAATATAAA
1 AATAACTTTTGAAAAATATAAAAAGCTCTTCTCATCAGAGGCTTAACAAATTTAAAAAATATAAA
12045584 ATA-CTTATTTAATTAGAGGCTC
66 A-AGCTTATTTAATTAGAGGCTC
* * * * * * *
12045606 AACAAC-TTTG-CAAATTTAAAAAAGCTCATCTCAAT-AGAGGCTTAACAACTTTTAGAAAACAT
1 AATAACTTTTGAAAAATAT-AAAAAGCTCTTCTC-ATCAGAGGCTTAACAA-ATTTAAAAAATAT
* * *
12045668 AAAAAGCTTATCTCAATGA-AGGTTC
63 AAAAAGCTTAT-TTAATTAGAGGCTC
* * * * * *
12045693 AATAACTTTTGAAAAATATAAAAGGCTCATT-TCAACAAAGGCTCAATAAGTTTAAAAAAATATA
1 AATAACTTTTGAAAAATATAAAAAGCTC-TTCTCATCAGAGGCTTAACAAATTT-AAAAAATATA
**
12045757 TAAAAGGCTCCTTTCAA-TAGAGGCTC
64 -AAAA-GCTTATTT-AATTAGAGGCTC
*
12045783 AATAACTTTT-AAAAATTTAAA
1 AATAACTTTTGAAAAATATAAA
12045804 CATCTTGCTC
Statistics
Matches: 156, Mismatches: 28, Indels: 26
0.74 0.13 0.12
Matches are distributed among these distances:
85 5 0.03
86 31 0.20
87 40 0.26
88 37 0.24
89 22 0.14
90 21 0.13
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.30
Consensus pattern (87 bp):
AATAACTTTTGAAAAATATAAAAAGCTCTTCTCATCAGAGGCTTAACAAATTTAAAAAATATAAA
AAGCTTATTTAATTAGAGGCTC
Found at i:12045772 original size:46 final size:45
Alignment explanation
Indices: 12045686--12045797 Score: 136
Period size: 46 Copynumber: 2.5 Consensus size: 45
12045676 TATCTCAATG
* **
12045686 AAGGTTCAATAACTTT-TGAAAAATATAAAAGGCTCATTTCAACA
1 AAGGCTCAATAACTTTAAAAAAAATATAAAAGGCTCATTTCAACA
* * *
12045730 AAGGCTCAATAAGTTTAAAAAAATATATAAAAGGCTCCTTTCAATA
1 AAGGCTCAATAACTTTAAAAAAA-ATATAAAAGGCTCATTTCAACA
* *
12045776 GAGGCTCAATAACTTTTAAAAA
1 AAGGCTCAATAACTTTAAAAAA
12045798 TTTAAACATC
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 14 0.25
45 4 0.07
46 39 0.68
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (45 bp):
AAGGCTCAATAACTTTAAAAAAAATATAAAAGGCTCATTTCAACA
Found at i:12046396 original size:22 final size:22
Alignment explanation
Indices: 12046371--12046426 Score: 67
Period size: 23 Copynumber: 2.5 Consensus size: 22
12046361 ATTATACTCA
*
12046371 GAGGTCTTACAGGTTATGCCCG
1 GAGGTCTTACAGATTATGCCCG
*
12046393 GAGGTCTTAAAAGATTATGCCCG
1 GAGGTCTT-ACAGATTATGCCCG
* *
12046416 AAAGTCTTACA
1 GAGGTCTTACA
12046427 AAACATATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (22 bp):
GAGGTCTTACAGATTATGCCCG
Found at i:12049568 original size:17 final size:16
Alignment explanation
Indices: 12049536--12049585 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
12049526 TTTTCCTTGA
*
12049536 TCATTTTTCATCTTTTT
1 TCATTTTT-TTCTTTTT
*
12049553 TCTTTTCTTTTCTTTTT
1 TCATTT-TTTTCTTTTT
*
12049570 TCATTTTTTCCTTTTT
1 TCATTTTTTTCTTTTT
12049586 GTTTTACCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 9 0.32
17 17 0.61
18 2 0.07
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (16 bp):
TCATTTTTTTCTTTTT
Found at i:12049585 original size:27 final size:27
Alignment explanation
Indices: 12049539--12049610 Score: 74
Period size: 27 Copynumber: 2.5 Consensus size: 27
12049529 TCCTTGATCA
*
12049539 TTTTTCATCTTTTTTCTTTTCTTTT-CT
1 TTTTTCAT-TTTTTCCTTTTCTTTTCCT
*
12049566 TTTTTCATTTTTTCCTTTTTGTTTTACCCT
1 TTTTTCATTTTTTCC-TTTTCTTTT--CCT
12049596 TTCTTTCATTTTTTC
1 TT-TTTCATTTTTTC
12049611 TTTATGTTTC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
26 6 0.16
27 16 0.42
30 4 0.11
31 12 0.32
ACGTcount: A:0.06, C:0.19, G:0.01, T:0.74
Consensus pattern (27 bp):
TTTTTCATTTTTTCCTTTTCTTTTCCT
Found at i:12052382 original size:21 final size:21
Alignment explanation
Indices: 12052356--12052399 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
12052346 TAACAATTTG
12052356 TTAGCCTTGAATTGATCCTTA
1 TTAGCCTTGAATTGATCCTTA
12052377 TTAGCCTTGAATTGATCCTTA
1 TTAGCCTTGAATTGATCCTTA
12052398 TT
1 TT
12052400 TTGAAATGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.18, G:0.14, T:0.45
Consensus pattern (21 bp):
TTAGCCTTGAATTGATCCTTA
Found at i:12066348 original size:74 final size:75
Alignment explanation
Indices: 12066269--12066502 Score: 213
Period size: 74 Copynumber: 3.1 Consensus size: 75
12066259 TCAAAAGTTT
* * *
12066269 CAAAAAAAATAAAAAATTGCATTTGCATCAATGACATGTGCATCATCAGAAAGACATTTGATTTG
1 CAAAAAAAATAAAAAATTACATTTACATCAATGACATGTGCATCATGAGAAAGACATTTGATTTG
**
12066334 CATGTTGT-A
66 CATGCCGTAA
* * * * * * * *
12066343 CAAAAAAAA-AAGACATTCACATTTACACCAATGACATGTGCATTATGAGAAGGATATTTAACTT
1 CAAAAAAAATAAAAAATT-ACATTTACATCAATGACATGTGCATCATGAGAAAGACATTTGATTT
12066407 GCATGCCGTAAAAA
65 GCATGCCGT---AA
* ** * * * *
12066421 AATAAAAAAATAAAAAATTACATTTTTATCAATTACATGTACATCATGAGAAAGACTTTTGATCT
1 CA-AAAAAAATAAAAAATTACATTTACATCAATGACATGTGCATCATGAGAAAGACATTTGATTT
*
12066486 GCGTGCCGTAA
65 GCATGCCGTAA
12066497 -AAAAAA
1 CAAAAAA
12066503 TTTACGCTGA
Statistics
Matches: 124, Mismatches: 29, Indels: 14
0.74 0.17 0.08
Matches are distributed among these distances:
73 6 0.05
74 58 0.47
75 1 0.01
76 2 0.02
78 2 0.02
79 49 0.40
80 6 0.05
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (75 bp):
CAAAAAAAATAAAAAATTACATTTACATCAATGACATGTGCATCATGAGAAAGACATTTGATTTG
CATGCCGTAA
Found at i:12067112 original size:21 final size:22
Alignment explanation
Indices: 12067051--12067139 Score: 92
Period size: 22 Copynumber: 4.1 Consensus size: 22
12067041 ATCAGCTAAA
*
12067051 ACCTAAGCCTAAATCAATTGGC
1 ACCTAAGCCTAAATCAGTTGGC
* *
12067073 A-CTCAAGCCTAGATTAGTTGGC
1 ACCT-AAGCCTAAATCAGTTGGC
12067095 ACCTAA-CCTAAATCAGTTGGC
1 ACCTAAGCCTAAATCAGTTGGC
* * * *
12067116 ACCCAAGCCCATATTAGTTGGC
1 ACCTAAGCCTAAATCAGTTGGC
12067138 AC
1 AC
12067140 TTTAAGCCCA
Statistics
Matches: 55, Mismatches: 9, Indels: 6
0.79 0.13 0.09
Matches are distributed among these distances:
21 20 0.36
22 33 0.60
23 2 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (22 bp):
ACCTAAGCCTAAATCAGTTGGC
Found at i:12067115 original size:43 final size:44
Alignment explanation
Indices: 12067051--12067139 Score: 135
Period size: 43 Copynumber: 2.0 Consensus size: 44
12067041 ATCAGCTAAA
* *
12067051 ACCTAAGCCTAAATCAATTGGCACTCAAGCCTAGATTAGTTGGC
1 ACCTAAGCCTAAATCAATTGGCACCCAAGCCCAGATTAGTTGGC
* *
12067095 ACCTAA-CCTAAATCAGTTGGCACCCAAGCCCATATTAGTTGGC
1 ACCTAAGCCTAAATCAATTGGCACCCAAGCCCAGATTAGTTGGC
12067138 AC
1 AC
12067140 TTTAAGCCCA
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
43 35 0.85
44 6 0.15
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (44 bp):
ACCTAAGCCTAAATCAATTGGCACCCAAGCCCAGATTAGTTGGC
Found at i:12067273 original size:22 final size:22
Alignment explanation
Indices: 12067248--12067290 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
12067238 TGATTGAGAT
12067248 TTTAAGCCTAGTTTAGTTGGCC
1 TTTAAGCCTAGTTTAGTTGGCC
* *
12067270 TTTAATCCTAGTTTGGTTGGC
1 TTTAAGCCTAGTTTAGTTGGC
12067291 ACCTAAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.44
Consensus pattern (22 bp):
TTTAAGCCTAGTTTAGTTGGCC
Found at i:12067449 original size:50 final size:49
Alignment explanation
Indices: 12067374--12067686 Score: 333
Period size: 50 Copynumber: 6.3 Consensus size: 49
12067364 AATTTTAAAC
* *
12067374 TTTTAGACAATATTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAACCAT
1 TTTTAGACAAAATTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAGCCAT
* **
12067423 TTTTAGACAAAATATTTAAAGATTCAAAGCCTCTATTTGGGGGAAGCCAT
1 TTTTAGACAAAAT-TTTAAAGTTTCAAAGCCTCTATTTGGGAAAAGCCAT
* * *
12067473 TTTTAGACAAGATTTTTAAAGTTCCAAAGCCTCTATTTAGGAAAAGCCA-
1 TTTTAGACAA-AATTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAGCCAT
* ** * * *
12067522 TTTTCGTACAAGGTTTTACAGTTTCAAAGCCTCTGTTTAGGG-GAAGCCAT
1 TTTTAG-ACAAAATTTTAAAGTTTCAAAGCCTCTATTT-GGGAAAAGCCAT
* * * * **
12067572 TTTTAGATAAAAGTTTTAAAGTTTTAAAGCCTCTGTTTAGGATGAGCCAT
1 TTTTAGACAAAA-TTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAGCCAT
* * * *
12067622 TTTCAAACAAAATTTTAAAGTTTCAAAGCCTCTATTTGCGAAGAGCCAT
1 TTTTAGACAAAATTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAGCCAT
* *
12067671 TTTCAGACAAGATTTT
1 TTTTAGACAAAATTTT
12067687 TTAAAAGTTT
Statistics
Matches: 219, Mismatches: 38, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
49 96 0.44
50 121 0.55
51 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (49 bp):
TTTTAGACAAAATTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAGCCAT
Found at i:12067570 original size:99 final size:97
Alignment explanation
Indices: 12067374--12067702 Score: 372
Period size: 99 Copynumber: 3.3 Consensus size: 97
12067364 AATTTTAAAC
* * * *
12067374 TTTTAGACAATA-TTTTAAAGTTTCAAAGCCTCTATTTGGGAAAAACCATTTTTAGACAAAATAT
1 TTTTAGACAAGATTTTTAAAGTTTCAAAGCCTCTATTTAGGAAAAGCCA-TTTTCGACAAAAT-T
*
12067438 TTAAAGATTCAAAGCCTCTATTTGGGGGAAGCCAT
64 TTAAAGTTTCAAAGCCTCTATTT-GGGGAAGCCAT
* **
12067473 TTTTAGACAAGATTTTTAAAGTTCCAAAGCCTCTATTTAGGAAAAGCCATTTTCGTACAAGGTTT
1 TTTTAGACAAGATTTTTAAAGTTTCAAAGCCTCTATTTAGGAAAAGCCATTTTCG-ACAAAATTT
* *
12067538 TACAGTTTCAAAGCCTCTGTTTAGGGGAAGCCAT
65 TAAAGTTTCAAAGCCTCTATTT-GGGGAAGCCAT
* * * * * ** *
12067572 TTTTAGATAAAAGTTTTAAAGTTTTAAAGCCTCTGTTTAGGATGAGCCATTTTCAAACAAAATTT
1 TTTTAGACAAGATTTTTAAAGTTTCAAAGCCTCTATTTAGGAAAAGCCATTTTC-GACAAAATTT
* *
12067637 TAAAGTTTCAAAGCCTCTATTTGCGAAGAGCCAT
65 TAAAGTTTCAAAGCCTCTATTTGGGGA-AGCCAT
* *
12067671 TTTCAGACAAGATTTTTTAAAAGTTTAAAAGC
1 TTTTAGACAAGA-TTTTT-AAAGTTTCAAAGC
12067703 TTTTATGTAG
Statistics
Matches: 193, Mismatches: 31, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
98 3 0.02
99 136 0.70
100 42 0.22
101 12 0.06
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (97 bp):
TTTTAGACAAGATTTTTAAAGTTTCAAAGCCTCTATTTAGGAAAAGCCATTTTCGACAAAATTTT
AAAGTTTCAAAGCCTCTATTTGGGGAAGCCAT
Found at i:12068033 original size:5 final size:5
Alignment explanation
Indices: 12068023--12068050 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
12068013 ATTCATAAAA
12068023 AAATC AAATC AAATC AAATC AAATC AAA
1 AAATC AAATC AAATC AAATC AAATC AAA
12068051 AAATTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.18, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATC
Found at i:12068094 original size:16 final size:16
Alignment explanation
Indices: 12068075--12068109 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 16
12068065 AAAAATAGGC
12068075 AAAAAAAAGCAAAAGAA
1 AAAAAAAAG-AAAAGAA
12068092 AAAAAAAAGAAAAGAA
1 AAAAAAAAGAAAAGAA
12068108 AA
1 AA
12068110 GGCTTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 9 0.50
17 9 0.50
ACGTcount: A:0.86, C:0.03, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAAAAAAGAAAAGAA
Found at i:12069946 original size:3 final size:3
Alignment explanation
Indices: 12069938--12069987 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
12069928 TGTTTGGCAC
12069938 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
12069986 AA
1 AA
12069988 CAACAACAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:12071415 original size:19 final size:19
Alignment explanation
Indices: 12071391--12071456 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
12071381 AAAATTTAAG
12071391 AAAATTATTTTTAAATATC
1 AAAATTATTTTTAAATATC
12071410 -AAA--A---TTAAATATC
1 AAAATTATTTTTAAATATC
12071423 AAAATTATTTTTAAATATC
1 AAAATTATTTTTAAATATC
12071442 AAAATTATTTTTAAA
1 AAAATTATTTTTAAA
12071457 AAAATGCTAG
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 9 0.22
14 3 0.07
16 2 0.05
18 3 0.07
19 24 0.59
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.44
Consensus pattern (19 bp):
AAAATTATTTTTAAATATC
Found at i:12071417 original size:13 final size:13
Alignment explanation
Indices: 12071401--12071429 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
12071391 AAAATTATTT
12071401 TTAAATATCAAAA
1 TTAAATATCAAAA
12071414 TTAAATATCAAAA
1 TTAAATATCAAAA
12071427 TTA
1 TTA
12071430 TTTTTAAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (13 bp):
TTAAATATCAAAA
Found at i:12071818 original size:62 final size:61
Alignment explanation
Indices: 12071716--12071838 Score: 156
Period size: 62 Copynumber: 2.0 Consensus size: 61
12071706 TCATTCATAT
* * * * * *
12071716 TCTATGCATCAAAGTTTACATTTTTATCAATGGTATTTTGGTAATTTTTGTTACATGCATTC
1 TCTATACATCAAAATTTACATTTTTATCAATAGCAATTTGGTAA-CTTTGTTACATGCATTC
* * *
12071778 TCTATACATCAAAATTTGCATTTTTGTTAATAGCAATTTGGTAACTTTGTTACATGCATTC
1 TCTATACATCAAAATTTACATTTTTATCAATAGCAATTTGGTAACTTTGTTACATGCATTC
12071839 CCAAACCCTA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
61 16 0.31
62 36 0.69
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (61 bp):
TCTATACATCAAAATTTACATTTTTATCAATAGCAATTTGGTAACTTTGTTACATGCATTC
Found at i:12071884 original size:20 final size:20
Alignment explanation
Indices: 12071838--12071894 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
12071828 TACATGCATT
* *
12071838 CCCAAACCCTAAACCTCAAC
1 CCCAAAACCTAAACCTAAAC
** *
12071858 CTTAAAACCTAAATCTAAAC
1 CCCAAAACCTAAACCTAAAC
*
12071878 CCCAAAAACCAAAACCT
1 CCC-AAAACCTAAACCT
12071895 CAATCCTAGA
Statistics
Matches: 27, Mismatches: 9, Indels: 1
0.73 0.24 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.47, C:0.39, G:0.00, T:0.14
Consensus pattern (20 bp):
CCCAAAACCTAAACCTAAAC
Found at i:12071922 original size:13 final size:13
Alignment explanation
Indices: 12071904--12071950 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
12071894 TCAATCCTAG
*
12071904 ACCCTAAATCAAA
1 ACCCTAAAACAAA
*
12071917 ACCCT-AACCATAA
1 ACCCTAAAACA-AA
*
12071930 ACCTTAAAACAAA
1 ACCCTAAAACAAA
12071943 ACCCTAAA
1 ACCCTAAA
12071951 CTAGACTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 4 0.14
13 20 0.71
14 4 0.14
ACGTcount: A:0.53, C:0.32, G:0.00, T:0.15
Consensus pattern (13 bp):
ACCCTAAAACAAA
Found at i:12073410 original size:49 final size:49
Alignment explanation
Indices: 12073343--12073621 Score: 270
Period size: 49 Copynumber: 5.7 Consensus size: 49
12073333 ATGGGTGAGG
* * * *
12073343 AAAGTTTCCTAACTTTTCTTTAAAAGAGCTTTTTCAAAATGAGATTTTT
1 AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTTCAAATTGAGATTTTT
* * * * **
12073392 CAAGTTTCTTGGCCTTTCTCTAAATGAGCTTTTTTGAATTGAGATTTTT
1 AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTTCAAATTGAGATTTTT
* * * **
12073441 AAAGTTTGTTAGCCTTTCTTTAAAGGAGATTTTTTTAATTGAGATTTTT
1 AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTTCAAATTGAGATTTTT
* * * * *
12073490 AAAGTTTCCTAACCTTTCTTTAAAAGAGCATTTCCAAATTAAGATTTTT
1 AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTTCAAATTGAGATTTTT
* * * * * *
12073539 AAAGTTTCCTAACTTTTTTTTATAAGAGCTTTTCCAAATTGAGATTTTT
1 AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTTCAAATTGAGATTTTT
** * * * *
12073588 AAACATTCTTGGCTTTTCTTTAAAGGAGCATTTT
1 AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTT
12073622 ATAGTTTCCT
Statistics
Matches: 188, Mismatches: 42, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 188 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (49 bp):
AAAGTTTCTTAGCCTTTCTTTAAAAGAGCTTTTTCAAATTGAGATTTTT
Found at i:12073608 original size:98 final size:97
Alignment explanation
Indices: 12073343--12073620 Score: 304
Period size: 98 Copynumber: 2.8 Consensus size: 97
12073333 ATGGGTGAGG
* *
12073343 AAAGTTTCCTAACTTTTCTTTAAAAGAGCTTTTTCAAAATGAGATTTTTCAAGTTTCTTGGCCTT
1 AAAGTTTCCTAACTTTTCTTT-AAAGAGCTTTTTCAAATTGAGATTTTTAAAGTTTCTTGGCCTT
* * * *** *
12073408 TCTCTAAATGAGCTTTTTTGAATTGAGATTTTT
65 TCTTTAAAAGAGCATTTCCAAATTAAGATTTTT
** * * * ** * **
12073441 AAAGTTTGTTAGCCTTTCTTTAAAGGAGATTTTTTTAATTGAGATTTTTAAAGTTTCCTAACCTT
1 AAAGTTTCCTAACTTTTCTTTAAA-GAGCTTTTTCAAATTGAGATTTTTAAAGTTTCTTGGCCTT
12073506 TCTTTAAAAGAGCATTTCCAAATTAAGATTTTT
65 TCTTTAAAAGAGCATTTCCAAATTAAGATTTTT
* * ** *
12073539 AAAGTTTCCTAACTTTTTTTTATAAGAGCTTTTCCAAATTGAGATTTTTAAACATTCTTGGCTTT
1 AAAGTTTCCTAACTTTTCTTTA-AAGAGCTTTTTCAAATTGAGATTTTTAAAGTTTCTTGGCCTT
*
12073604 TCTTTAAAGGAGCATTT
65 TCTTTAAAAGAGCATTT
12073621 TATAGTTTCC
Statistics
Matches: 143, Mismatches: 35, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
97 3 0.02
98 138 0.97
99 2 0.01
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (97 bp):
AAAGTTTCCTAACTTTTCTTTAAAGAGCTTTTTCAAATTGAGATTTTTAAAGTTTCTTGGCCTTT
CTTTAAAAGAGCATTTCCAAATTAAGATTTTT
Found at i:12073610 original size:147 final size:148
Alignment explanation
Indices: 12073343--12073621 Score: 355
Period size: 147 Copynumber: 1.9 Consensus size: 148
12073333 ATGGGTGAGG
* * * * * * **
12073343 AAAGTTTCCTAACTTTTCTTTAAAAGAGCTTTTTCAAAATGAGATTTTTCAAGTTTCTTGGCCTT
1 AAAGTTTCCTAACCTTTCTTTAAAAGAGCATTTCCAAAATAAGATTTTTAAAGTTTCCTAACCTT
*** ** *
12073408 TCTCTAAATGAGCTTTTTTGAATTGAGATTTTTAAAGTTTGTTAGCCTTTCTTTAAAGGAG-ATT
66 TCTCTAAATGAGCTTTTCCAAATTGAGATTTTTAAACATTCTTAGCCTTTCTTTAAAGGAGCATT
12073472 TTTTTAATTGAGATTTTT
131 TTTTTAATTGAGATTTTT
* *
12073490 AAAGTTTCCTAACCTTTCTTTAAAAGAGCATTTCCAAATTAAGATTTTTAAAGTTTCCTAACTTT
1 AAAGTTTCCTAACCTTTCTTTAAAAGAGCATTTCCAAAATAAGATTTTTAAAGTTTCCTAACCTT
* * * *
12073555 TTTTTATAA-GAGCTTTTCCAAATTGAGATTTTTAAACATTCTTGGCTTTTCTTTAAAGGAGCAT
66 TCTCTA-AATGAGCTTTTCCAAATTGAGATTTTTAAACATTCTTAGCCTTTCTTTAAAGGAGCAT
12073619 TTT
130 TTT
12073622 ATAGTTTCCT
Statistics
Matches: 110, Mismatches: 20, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
147 103 0.94
148 7 0.06
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.47
Consensus pattern (148 bp):
AAAGTTTCCTAACCTTTCTTTAAAAGAGCATTTCCAAAATAAGATTTTTAAAGTTTCCTAACCTT
TCTCTAAATGAGCTTTTCCAAATTGAGATTTTTAAACATTCTTAGCCTTTCTTTAAAGGAGCATT
TTTTTAATTGAGATTTTT
Found at i:12073622 original size:83 final size:83
Alignment explanation
Indices: 12073535--12073699 Score: 206
Period size: 83 Copynumber: 2.0 Consensus size: 83
12073525 AAATTAAGAT
* * * * * * *
12073535 TTTTAAAGTTTCCTAACTTTTTTTTATAAGAGCTTTTCCAAATTGAGATTTTTAAACATT-CTTG
1 TTTTAAAGTTTCCTAACCTCTCTTTAAAAGAGCTTTTCCAAATTAAGATTCTTAAACATTAC-TA
12073599 GCTTTTCTTTAAAGGAGCA
65 GCTTTTCTTTAAAGGAGCA
* * **
12073618 TTTTATAGTTTCCTAACCTCTCTTTAAAAGAGCTTTTCTAAATTAAGATTCTTAAAGTTTACTAG
1 TTTTAAAGTTTCCTAACCTCTCTTTAAAAGAGCTTTTCCAAATTAAGATTCTTAAACATTACTAG
*
12073683 CTTTTCTTTAAATGAGC
66 CTTTTCTTTAAAGGAGC
12073700 CTTTCCAAAT
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
83 68 0.99
84 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.11, T:0.46
Consensus pattern (83 bp):
TTTTAAAGTTTCCTAACCTCTCTTTAAAAGAGCTTTTCCAAATTAAGATTCTTAAACATTACTAG
CTTTTCTTTAAAGGAGCA
Found at i:12073738 original size:132 final size:132
Alignment explanation
Indices: 12073486--12073742 Score: 356
Period size: 132 Copynumber: 1.9 Consensus size: 132
12073476 TAATTGAGAT
* * *
12073486 TTTTAAAGTTTCCTAACCTTTCTTTAAAAGAGCATTTCCAAATTAAGATTTTTAAAGTTTCCTAA
1 TTTTAAAGTTTCCTAACCTCTCTTTAAAAGAGCATTTCCAAATTAAGATTCTTAAAGTTTACTAA
* * * * *
12073551 CTTTTTTTTATAAGAGCTTTTCCAAATTGAGATTTTTAAACATTCTTGGCTTTTCTTTAAAGGAG
66 CTTTTCTTTATAAGAGCCTTTCCAAATTGAGATTTTTAAACATTCCTAGCATTTCTTTAAAGGAG
12073616 CA
131 CA
* * * *
12073618 TTTTATAGTTTCCTAACCTCTCTTTAAAAGAGCTTTTCTAAATTAAGATTCTTAAAGTTTACTAG
1 TTTTAAAGTTTCCTAACCTCTCTTTAAAAGAGCATTTCCAAATTAAGATTCTTAAAGTTTACTAA
**
12073683 CTTTTCTTTA-AATGAGCCTTTCCAAATTG-GAATTTTTAAAGTTTCCTAGCATTTCTTTAA
66 CTTTTCTTTATAA-GAGCCTTTCCAAATTGAG-ATTTTTAAACATTCCTAGCATTTCTTTAA
12073743 TGAAGCTTTT
Statistics
Matches: 109, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
131 3 0.03
132 106 0.97
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (132 bp):
TTTTAAAGTTTCCTAACCTCTCTTTAAAAGAGCATTTCCAAATTAAGATTCTTAAAGTTTACTAA
CTTTTCTTTATAAGAGCCTTTCCAAATTGAGATTTTTAAACATTCCTAGCATTTCTTTAAAGGAG
CA
Found at i:12073817 original size:49 final size:48
Alignment explanation
Indices: 12073618--12073920 Score: 242
Period size: 49 Copynumber: 6.2 Consensus size: 48
12073608 TAAAGGAGCA
* * * * * *
12073618 TTTTATAGTTTCCTAACCTCTCTTTAAAAGAGCTTTTCTAAATTAAGAT
1 TTTTAAAGTTTCCTAGCCTTTCTTTAAATGAGCTTTTCAAAATT-GGAT
* * * * *
12073667 TCTTAAAGTTTACTAGCTTTTCTTTAAATGAGCCTTTCCAAATTGGAAT
1 TTTTAAAGTTTCCTAGCCTTTCTTTAAATGAGCTTTTCAAAATTGG-AT
* * *
12073716 TTTTAAAGTTTCCTAGCATTTCTTT-AATGAAGCTTTTCCAAATTAAGA-
1 TTTTAAAGTTTCCTAGCCTTTCTTTAAATG-AGCTTTTCAAAATT-GGAT
*
12073764 TTTTAAAGTTTTCTAGTCCTTT-TTTAAATGAGCGTTTTCAAAATTGGAT
1 TTTTAAAGTTTCCTAG-CCTTTCTTTAAATGAGC-TTTTCAAAATTGGAT
* ** * *
12073813 TTTTAAAATTTCCTATTCTTT-TTTTAATGGAACTTTTTCAAAATTGGA-
1 TTTTAAAGTTTCCTAGCCTTTCTTTAAAT-GAGC-TTTTCAAAATTGGAT
** * *
12073861 TTTTAAAGTTTCCTAAG-CTTTCTTTAACGGAGCTTTT-AAAGTTGGGAA
1 TTTTAAAGTTTCCT-AGCCTTTCTTTAAATGAGCTTTTCAAAATT-GGAT
*
12073909 TTTTAAATTTTC
1 TTTTAAAGTTTC
12073921 TTAACCCTTT
Statistics
Matches: 208, Mismatches: 34, Indels: 25
0.78 0.13 0.09
Matches are distributed among these distances:
46 5 0.02
47 7 0.03
48 69 0.33
49 126 0.61
50 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.12, T:0.47
Consensus pattern (48 bp):
TTTTAAAGTTTCCTAGCCTTTCTTTAAATGAGCTTTTCAAAATTGGAT
Found at i:12073839 original size:97 final size:98
Alignment explanation
Indices: 12073648--12073887 Score: 278
Period size: 97 Copynumber: 2.5 Consensus size: 98
12073638 TCTTTAAAAG
* * *
12073648 AGCTTTTCTAAATTAAGATTCTTAAAGTTTACTAGCTTTTCTTTAAATGAGCCTTTCCAAATTGG
1 AGCTTTTCAAAATTAAGATT-TTAAAGTTTACTAGCCTTTCTTTAAATGAGCCTTTCAAAATTGG
*
12073713 AATTTTTAAAGTTTCCTAGCATTTCTTTAAT-GA
65 AATTTTTAAAATTTCCTAGCATTTCTTTAATGGA
* * *
12073746 AGCTTTTCCAAATTAAGATTTTAAAGTTTTCTAGTCCTTT-TTTAAATGAGCGTTTTCAAAATTG
1 AGCTTTTCAAAATTAAGATTTTAAAGTTTACTAG-CCTTTCTTTAAATGAGC-CTTTCAAAATTG
* *
12073810 G-ATTTTTAAAATTTCCTATTC-TTTTTTTAATGGA
64 GAATTTTTAAAATTTCCTA-GCATTTCTTTAATGGA
* *
12073844 A-CTTTTTCAAAATT-GGATTTTAAAGTTTCCTAAG-CTTTCTTTAA
1 AGC-TTTTCAAAATTAAGATTTTAAAGTTTACT-AGCCTTTCTTTAA
12073888 CGGAGCTTTT
Statistics
Matches: 124, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
96 4 0.03
97 70 0.56
98 50 0.40
ACGTcount: A:0.29, C:0.13, G:0.11, T:0.47
Consensus pattern (98 bp):
AGCTTTTCAAAATTAAGATTTTAAAGTTTACTAGCCTTTCTTTAAATGAGCCTTTCAAAATTGGA
ATTTTTAAAATTTCCTAGCATTTCTTTAATGGA
Found at i:12073912 original size:97 final size:94
Alignment explanation
Indices: 12073648--12073920 Score: 261
Period size: 97 Copynumber: 2.8 Consensus size: 94
12073638 TCTTTAAAAG
* *
12073648 AGCTTTTCTAAATTAAGATTCTTAAAGTTTACTAGCTTTTCTTTAAATGAGCCTTTCCAAATTGG
1 AGCTTTTCAAAATTAAGATT-TTAAAGTTTACTAGC-TTTCTTTAAATGAG-CTTT-TAAATTGG
*
12073713 AATTTTTAAAGTTTCCTAGCATTTCTTTAATGA
62 AATTTTTAAAATTTCCTAGCATTTCTTTAATGA
* *
12073746 AGCTTTTCCAAATTAAGATTTTAAAGTTTTCTAGTCCTTT-TTTAAATGAGCGTTTTCAAAATTG
1 AGCTTTTCAAAATTAAGATTTTAAAGTTTACTAG--CTTTCTTTAAATGAGC-TTTT--AAATTG
* *
12073810 G-ATTTTTAAAATTTCCTATTC-TTTTTTTAATGGA
61 GAATTTTTAAAATTTCCTA-GCATTTCTTTAAT-GA
* * **
12073844 A-CTTTTTCAAAATT-GGATTTTAAAGTTTCCTAAGCTTTCTTTAACGGAGCTTTTAAAGTTGGG
1 AGC-TTTTCAAAATTAAGATTTTAAAGTTTACT-AGCTTTCTTTAAATGAGCTTTTAAA-TT-GG
*
12073907 AA-TTTTAAATTTTC
62 AATTTTTAAAATTTC
12073921 TTAACCCTTT
Statistics
Matches: 150, Mismatches: 12, Indels: 28
0.79 0.06 0.15
Matches are distributed among these distances:
94 3 0.02
95 2 0.01
96 22 0.15
97 77 0.51
98 45 0.30
99 1 0.01
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (94 bp):
AGCTTTTCAAAATTAAGATTTTAAAGTTTACTAGCTTTCTTTAAATGAGCTTTTAAATTGGAATT
TTTAAAATTTCCTAGCATTTCTTTAATGA
Found at i:12073991 original size:49 final size:50
Alignment explanation
Indices: 12073938--12074050 Score: 144
Period size: 49 Copynumber: 2.3 Consensus size: 50
12073928 TTTTTTAGGG
12073938 GAGTTTTTCAAAATTTA-CATTTTCAAAAGT-TTGAAACCTCAT-TTTAAAA
1 GAGTTTTTCAAAATTTATCATTTT-AAAAGTCTTGAAACCTC-TGTTTAAAA
* * *
12073987 GAGTTTTTC-AAATTTATGATTTTTAAAGTCTTGAAACCTCTGTTTAGAA
1 GAGTTTTTCAAAATTTATCATTTTAAAAGTCTTGAAACCTCTGTTTAAAA
*
12074036 TAGTTTTTCAAAATT
1 GAGTTTTTCAAAATT
12074051 CAAGATTTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
48 13 0.23
49 38 0.68
50 5 0.09
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (50 bp):
GAGTTTTTCAAAATTTATCATTTTAAAAGTCTTGAAACCTCTGTTTAAAA
Found at i:12074367 original size:20 final size:20
Alignment explanation
Indices: 12074342--12074380 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
12074332 TCAAATGCTC
*
12074342 AAAATCAAATTTGGTCAAAT
1 AAAATCAAACTTGGTCAAAT
12074362 AAAATCAAACTTGGTCAAA
1 AAAATCAAACTTGGTCAAA
12074381 ATTTGTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (20 bp):
AAAATCAAACTTGGTCAAAT
Found at i:12076578 original size:33 final size:32
Alignment explanation
Indices: 12076503--12076630 Score: 98
Period size: 33 Copynumber: 3.9 Consensus size: 32
12076493 TGCATTCCCA
* *
12076503 AACCCTAAACC-AAACCTTAAGCCCAAACCCT
1 AACCTTAAACCTAAACCTTAAACCCAAACCCT
* *
12076534 AATGCTGAAACCTAAACCTTAAACCC-AACCCTT
1 AA-CCTTAAACCTAAACCTTAAACCCAAACCC-T
* * **
12076567 CAACCTTAAACCTAAGCCCTAAAAACAAACCCT
1 -AACCTTAAACCTAAACCTTAAACCCAAACCCT
* * *
12076600 AAACTAGAAACCTAAACCCTAAACCCTAAAC
1 AACCT-TAAACCTAAACCTTAAACCC-AAAC
12076631 TTAAACCCCA
Statistics
Matches: 75, Mismatches: 15, Indels: 11
0.74 0.15 0.11
Matches are distributed among these distances:
31 2 0.03
32 15 0.20
33 47 0.63
34 11 0.15
ACGTcount: A:0.45, C:0.36, G:0.04, T:0.16
Consensus pattern (32 bp):
AACCTTAAACCTAAACCTTAAACCCAAACCCT
Found at i:12076603 original size:7 final size:7
Alignment explanation
Indices: 12076502--12076666 Score: 75
Period size: 7 Copynumber: 24.9 Consensus size: 7
12076492 ATGCATTCCC
12076502 AAACCCT
1 AAACCCT
12076509 AAA-CC-
1 AAACCCT
*
12076514 AAACCTT
1 AAACCCT
*
12076521 AAGCCC-
1 AAACCCT
12076527 AAACCCT
1 AAACCCT
**
12076534 -AATGCT
1 AAACCCT
12076540 GAAA-CCT
1 -AAACCCT
*
12076547 AAACCTT
1 AAACCCT
12076554 AAACCC-
1 AAACCCT
12076560 -AACCCTT
1 AAACCC-T
* *
12076567 CAACCTT
1 AAACCCT
12076574 AAA-CCT
1 AAACCCT
*
12076580 AAGCCCT
1 AAACCCT
**
12076587 AAAAAC-
1 AAACCCT
12076593 AAACCCT
1 AAACCCT
12076600 AAA--CT
1 AAACCCT
*
12076605 AGAAACCT
1 A-AACCCT
12076613 AAACCCT
1 AAACCCT
12076620 AAACCCT
1 AAACCCT
*
12076627 AAA-CTT
1 AAACCCT
*
12076633 AAACCCC
1 AAACCCT
*
12076640 AAAACCT
1 AAACCCT
*
12076647 AAATCCT
1 AAACCCT
*
12076654 AAAACCT
1 AAACCCT
12076661 AAACCC
1 AAACCC
12076667 CAATCCTAGA
Statistics
Matches: 116, Mismatches: 27, Indels: 30
0.67 0.16 0.17
Matches are distributed among these distances:
5 11 0.09
6 30 0.26
7 66 0.57
8 9 0.08
ACGTcount: A:0.45, C:0.36, G:0.03, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:12076623 original size:13 final size:13
Alignment explanation
Indices: 12076502--12076683 Score: 104
Period size: 13 Copynumber: 13.8 Consensus size: 13
12076492 ATGCATTCCC
12076502 AAACCCTAAACC-
1 AAACCCTAAACCT
* * *
12076514 AAACCTTAAGCCC
1 AAACCCTAAACCT
**
12076527 AAACCCTAATGCT
1 AAACCCTAAACCT
12076540 GAAA-CCTAAACCTT
1 -AAACCCTAAACC-T
*
12076554 AAACCC-AACCCTT
1 AAACCCTAAACC-T
* *
12076567 CAACCTTAAACCT
1 AAACCCTAAACCT
* *
12076580 AAGCCCTAAAAAC-
1 AAACCCT-AAACCT
12076593 AAACCCTAAA-CT
1 AAACCCTAAACCT
*
12076605 AGAAACCTAAACCCT
1 A-AACCCTAAA-CCT
*
12076620 AAACCCTAAACTT
1 AAACCCTAAACCT
*
12076633 AAACCCCAAAACCT
1 AAA-CCCTAAACCT
*
12076647 AAATCCTAAAACCT
1 AAACCCT-AAACCT
* *
12076661 AAACCCCAATCCT
1 AAACCCTAAACCT
*
12076674 AGACCCTAAA
1 AAACCCTAAA
12076684 GCAAAAATCT
Statistics
Matches: 128, Mismatches: 30, Indels: 23
0.71 0.17 0.13
Matches are distributed among these distances:
11 1 0.01
12 14 0.11
13 66 0.52
14 44 0.34
15 3 0.02
ACGTcount: A:0.45, C:0.36, G:0.03, T:0.16
Consensus pattern (13 bp):
AAACCCTAAACCT
Found at i:12076630 original size:20 final size:20
Alignment explanation
Indices: 12076502--12076683 Score: 92
Period size: 20 Copynumber: 9.2 Consensus size: 20
12076492 ATGCATTCCC
*
12076502 AAACCCTAAACC-AAACCTT
1 AAACCCTAAACCTAAACCCT
* **
12076521 AAGCCC-AAACCCT-AATGCT
1 AAACCCTAAA-CCTAAACCCT
12076540 GAAA-CCTAAACCTTAAACCC-
1 -AAACCCTAAACC-TAAACCCT
*
12076560 -AACCCTTCAACCTTAAA-CCT
1 AAACCC-TAAACC-TAAACCCT
* *
12076580 AAGCCCTAAAAAC-AAACCCT
1 AAACCCT-AAACCTAAACCCT
***
12076600 AAACTAGAAACCTAAACCCT
1 AAACCCTAAACCTAAACCCT
* *
12076620 AAACCCTAAACTTAAACCCC
1 AAACCCTAAACCTAAACCCT
* *
12076640 AAAACCTAAATCCTAAAACCT
1 AAACCCTAAA-CCTAAACCCT
* * *
12076661 AAACCCCAATCCTAGACCCT
1 AAACCCTAAACCTAAACCCT
12076681 AAA
1 AAA
12076684 GCAAAAATCT
Statistics
Matches: 119, Mismatches: 30, Indels: 27
0.68 0.17 0.15
Matches are distributed among these distances:
18 5 0.04
19 25 0.21
20 65 0.55
21 24 0.20
ACGTcount: A:0.45, C:0.36, G:0.03, T:0.16
Consensus pattern (20 bp):
AAACCCTAAACCTAAACCCT
Found at i:12076658 original size:28 final size:27
Alignment explanation
Indices: 12076568--12076683 Score: 94
Period size: 27 Copynumber: 4.3 Consensus size: 27
12076558 CCAACCCTTC
* * * *
12076568 AACCTTAAACCTAAGCCCTAAAAAC-A
1 AACCCTAAACCTAAACCCCAAAACCTA
* * *
12076594 AACCCTAAA-CTAGAAACCTAAACCCTA
1 AACCCTAAACCTA-AACCCCAAAACCTA
*
12076621 AACCCTAAACTTAAACCCCAAAACCTA
1 AACCCTAAACCTAAACCCCAAAACCTA
* *
12076648 AATCCTAAAACCTAAACCCC-AATCCTA
1 AACCCT-AAACCTAAACCCCAAAACCTA
*
12076675 GACCCTAAA
1 AACCCTAAA
12076684 GCAAAAATCT
Statistics
Matches: 72, Mismatches: 14, Indels: 8
0.77 0.15 0.09
Matches are distributed among these distances:
25 3 0.04
26 19 0.26
27 36 0.50
28 14 0.19
ACGTcount: A:0.47, C:0.34, G:0.03, T:0.16
Consensus pattern (27 bp):
AACCCTAAACCTAAACCCCAAAACCTA
Found at i:12076735 original size:26 final size:26
Alignment explanation
Indices: 12076671--12076735 Score: 62
Period size: 26 Copynumber: 2.5 Consensus size: 26
12076661 AAACCCCAAT
*
12076671 CCTAGACCCTAAAGCAAAAATCTAAC
1 CCTAGACCCTAAAACAAAAATCTAAC
* *
12076697 CCTA-ATCCATAAAACCAAAATCATAA-
1 CCTAGA-CCCTAAAACAAAAATC-TAAC
*
12076723 CCTAGGCCCTAAA
1 CCTAGACCCTAAA
12076736 CTAACCTCAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 27 0.87
27 3 0.10
ACGTcount: A:0.46, C:0.31, G:0.06, T:0.17
Consensus pattern (26 bp):
CCTAGACCCTAAAACAAAAATCTAAC
Found at i:12080119 original size:7 final size:7
Alignment explanation
Indices: 12080099--12080346 Score: 98
Period size: 7 Copynumber: 37.3 Consensus size: 7
12080089 GCGCATTTCC
12080099 AAACCCT
1 AAACCCT
12080106 AAA-CCT
1 AAACCCT
12080112 AAACCCT
1 AAACCCT
*
12080119 AAACTCT
1 AAACCCT
*
12080126 AAA-TCT
1 AAACCCT
*
12080132 AAAACCTT
1 -AAACCCT
12080140 AAA-CCT
1 AAACCCT
12080146 -AACCCT
1 AAACCCT
*
12080152 GAACCCT
1 AAACCCT
*
12080159 AAACCTT
1 AAACCCT
12080166 AAA-CCT
1 AAACCCT
12080172 AAACCCT
1 AAACCCT
12080179 AAA-CCT
1 AAACCCT
12080185 AAAACCCT
1 -AAACCCT
* *
12080193 TAA-CTT
1 AAACCCT
12080199 AAACCCT
1 AAACCCT
12080206 -AACCC-
1 AAACCCT
*
12080211 AAACCTT
1 AAACCCT
* *
12080218 AAATCTT
1 AAACCCT
*
12080225 AAA-ACT
1 AAACCCT
*
12080231 AAACCAT
1 AAACCCT
**
12080238 AAACTAT
1 AAACCCT
*
12080245 AAA-GCT
1 AAACCCT
12080251 AAACCCT
1 AAACCCT
* * **
12080258 TATCTTT
1 AAACCCT
12080265 AAA-CCT
1 AAACCCT
*
12080271 AAACCTT
1 AAACCCT
*
12080278 AAAACCT
1 AAACCCT
12080285 AAATCCC-
1 AAA-CCCT
*
12080292 -AACCTT
1 AAACCCT
*
12080298 AGACCCT
1 AAACCCT
*
12080305 AAA--TT
1 AAACCCT
*
12080310 AAAGCC-
1 AAACCCT
12080316 ATAACCCT
1 A-AACCCT
12080324 AAACCCT
1 AAACCCT
* *
12080331 AAAACCA
1 AAACCCT
12080338 AAACCCT
1 AAACCCT
12080345 AA
1 AA
12080347 CTTAGACCCT
Statistics
Matches: 176, Mismatches: 44, Indels: 42
0.67 0.17 0.16
Matches are distributed among these distances:
5 8 0.05
6 50 0.28
7 111 0.63
8 7 0.04
ACGTcount: A:0.46, C:0.32, G:0.02, T:0.21
Consensus pattern (7 bp):
AAACCCT
Found at i:12080227 original size:26 final size:26
Alignment explanation
Indices: 12080099--12080220 Score: 108
Period size: 27 Copynumber: 4.6 Consensus size: 26
12080089 GCGCATTTCC
*
12080099 AAACCCTAAACC-TAAACCCTAAACTCT
1 AAACCC-AAACCTTAAA-CCTAAACCCT
**
12080126 AAATCTAAAACCTTAAACCT-AACCCT
1 AAA-CCCAAACCTTAAACCTAAACCCT
*
12080152 GAACCCTAAACCTTAAACCTAAACCCT
1 AAACCC-AAACCTTAAACCTAAACCCT
* *
12080179 AAACCTAAAACCCTT-AACTTAAACCCT
1 AAACC-CAAA-CCTTAAACCTAAACCCT
12080206 -AACCCAAACCTTAAA
1 AAACCCAAACCTTAAA
12080221 TCTTAAAACT
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
24 4 0.05
25 6 0.08
26 24 0.31
27 35 0.45
28 9 0.12
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (26 bp):
AAACCCAAACCTTAAACCTAAACCCT
Found at i:12080229 original size:27 final size:26
Alignment explanation
Indices: 12080133--12080235 Score: 97
Period size: 26 Copynumber: 4.0 Consensus size: 26
12080123 TCTAAATCTA
* *
12080133 AAACCTTAAACCT-AACCCTGAACCC
1 AAACCTTAAACTTAAACCCTAAACCC
* *
12080158 TAAACCTTAAACCTAAACCCTAAACCTA
1 -AAACCTTAAACTTAAACCCTAAACC-C
12080186 AAACCCTT-AACTTAAACCCT-AACCC
1 AAA-CCTTAAACTTAAACCCTAAACCC
*
12080211 AAACCTTAAATCTTAAA-ACTAAACC
1 AAACCTTAAA-CTTAAACCCTAAACC
12080236 ATAAACTATA
Statistics
Matches: 66, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
24 4 0.06
25 7 0.11
26 27 0.41
27 24 0.36
28 4 0.06
ACGTcount: A:0.45, C:0.34, G:0.01, T:0.20
Consensus pattern (26 bp):
AAACCTTAAACTTAAACCCTAAACCC
Found at i:12080287 original size:20 final size:19
Alignment explanation
Indices: 12080103--12080287 Score: 115
Period size: 20 Copynumber: 9.3 Consensus size: 19
12080093 ATTTCCAAAC
*
12080103 CCTAAACCTAAACCCTAAA
1 CCTAAACCTAAACCTTAAA
*
12080122 CTCTAAATCTAAAACCTTAAA
1 C-CTAAACCT-AAACCTTAAA
* * *
12080143 CCTAACCCTGAACCCTAAA
1 CCTAAACCTAAACCTTAAA
*
12080162 CCTTAAACCTAAACCCTAAA
1 CC-TAAACCTAAACCTTAAA
*
12080182 CCTAAAACCCTTAA-CTTAAA
1 CCT-AAA-CCTAAACCTTAAA
*
12080202 CCCT-AACCCAAACCTTAAA
1 -CCTAAACCTAAACCTTAAA
* * *
12080221 TCTTAAAACTAAACCATAAA
1 -CCTAAACCTAAACCTTAAA
* * *
12080241 CTATAAAGCTAAACCCTT-AT
1 C-CTAAACCTAAA-CCTTAAA
*
12080261 CTTTAAACCTAAACCTTAAAA
1 C-CTAAACCTAAACCTT-AAA
12080282 CCTAAA
1 CCTAAA
12080288 TCCCAACCTT
Statistics
Matches: 129, Mismatches: 25, Indels: 23
0.73 0.14 0.13
Matches are distributed among these distances:
18 4 0.03
19 27 0.21
20 75 0.58
21 23 0.18
ACGTcount: A:0.45, C:0.31, G:0.01, T:0.23
Consensus pattern (19 bp):
CCTAAACCTAAACCTTAAA
Found at i:12080321 original size:26 final size:26
Alignment explanation
Indices: 12080292--12080363 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 26
12080282 CCTAAATCCC
** *
12080292 AACCTTAGACCCTAAATTAAAGCCAT
1 AACCTTAGACCCTAAACCAAAACCAT
* * *
12080318 AACCCTAAACCCTAAAACCAAAACCCT
1 AACCTTAGACCCT-AAACCAAAACCAT
12080345 AA-CTTAGACCCTAAACCAA
1 AACCTTAGACCCTAAACCAA
12080364 CCCTAAAACC
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
25 7 0.19
26 19 0.51
27 11 0.30
ACGTcount: A:0.46, C:0.33, G:0.04, T:0.17
Consensus pattern (26 bp):
AACCTTAGACCCTAAACCAAAACCAT
Found at i:12083244 original size:18 final size:18
Alignment explanation
Indices: 12083188--12083246 Score: 52
Period size: 18 Copynumber: 3.3 Consensus size: 18
12083178 GAATTGTGCA
12083188 AAAAATAAA-AAATGAAAG
1 AAAAATAAAGAAAT-AAAG
* * *
12083206 -AATATGAAGAAA-AGAAA
1 AAAAATAAAGAAATA-AAG
12083223 AAAAATAAAGAAATAAAG
1 AAAAATAAAGAAATAAAG
12083241 AAAAAT
1 AAAAAT
12083247 TGATGAAGAA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
16 1 0.03
17 8 0.26
18 21 0.68
19 1 0.03
ACGTcount: A:0.76, C:0.00, G:0.12, T:0.12
Consensus pattern (18 bp):
AAAAATAAAGAAATAAAG
Found at i:12083561 original size:15 final size:13
Alignment explanation
Indices: 12083532--12083573 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 13
12083522 AAAGATGTGC
12083532 AAAAATAAAAAAG
1 AAAAATAAAAAAG
12083545 AAAAACTAAAGAAAG
1 AAAAA-TAAA-AAAG
12083560 AAAAA-AAAAGAAG
1 AAAAATAAAA-AAG
12083573 A
1 A
12083574 CTTAAATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.04
13 12 0.46
14 4 0.15
15 9 0.35
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (13 bp):
AAAAATAAAAAAG
Found at i:12083569 original size:14 final size:14
Alignment explanation
Indices: 12083532--12083571 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
12083522 AAAGATGTGC
12083532 AAAAATAAA-AAAG
1 AAAAATAAAGAAAG
12083545 AAAAACTAAAGAAAG
1 AAAAA-TAAAGAAAG
*
12083560 AAAAAAAAAGAA
1 AAAAATAAAGAA
12083572 GACTTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 5 0.21
14 10 0.42
15 9 0.38
ACGTcount: A:0.82, C:0.03, G:0.10, T:0.05
Consensus pattern (14 bp):
AAAAATAAAGAAAG
Found at i:12084821 original size:42 final size:40
Alignment explanation
Indices: 12084725--12085042 Score: 175
Period size: 42 Copynumber: 7.7 Consensus size: 40
12084715 AAATCCTAGC
** *
12084725 TTTTAATTTTCAAAAGTTTCAAAGCC-CCAGTGGGGGAGCA
1 TTTT-ATTTTCAAAAGTTTCAAAGCCTTTAGTGGAGGAGCA
* *
12084765 CTTTAAATTTCAAAAGTTTCAAAGCCTTTAGTGAGAGGAGCA
1 -TTTTATTTTCAAAAGTTTCAAAGCCTTTAGTG-GAGGAGCA
* * * *
12084807 TTTTATTTTCCAAAAATTTCAAAACCTCTAGTGGGGGTAGCA
1 TTTTATTTT-CAAAAGTTTCAAAGCCTTTAGTGGAGG-AGCA
* * * * *
12084849 TTTTAGTTTCCAAAA-TTACAAAGACTCTAGTGGGAAAGAGCA
1 TTTTA-TTTTCAAAAGTTTCAAAGCCTTTAGT-GG-AGGAGCA
* * ***
12084891 TTTAATTTTCTAAAAGTTTCAAAGCC-TTCGATGGTTAAG-A
1 TTTTATTTTC-AAAAGTTTCAAAGCCTTTAG-TGGAGGAGCA
* * * ***
12084931 TTTTATTTTTCAAAAGTTTCAAAGCCTATGGTAAGAGGAATG
1 TTTTA-TTTTCAAAAGTTTCAAAGCCTTTAGT-GGAGGAGCA
* **
12084973 TTTTAAATTTTC-AAAGTTTCAAAGCCCTTAGTAAAGGGAGCA
1 TTTT--ATTTTCAAAAGTTTCAAAGCCTTTAGTGGA-GGAGCA
12085015 TTTT-TTAATTC--AAGTTTCAAAGCCTTTA
1 TTTTATT--TTCAAAAGTTTCAAAGCCTTTA
12085043 CTAAAGGGAA
Statistics
Matches: 215, Mismatches: 43, Indels: 39
0.72 0.14 0.13
Matches are distributed among these distances:
39 2 0.01
40 57 0.27
41 50 0.23
42 87 0.40
43 18 0.08
44 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.35
Consensus pattern (40 bp):
TTTTATTTTCAAAAGTTTCAAAGCCTTTAGTGGAGGAGCA
Found at i:12084877 original size:41 final size:42
Alignment explanation
Indices: 12084803--12084882 Score: 119
Period size: 41 Copynumber: 1.9 Consensus size: 42
12084793 TAGTGAGAGG
* *
12084803 AGCATTTTATTTTCCAAAAATTTCAAAACCTCTAGTGGGGGT
1 AGCATTTTAGTTTCCAAAAATTACAAAACCTCTAGTGGGGGT
12084845 AGCATTTTAGTTTCC-AAAATTACAAAGA-CTCTAGTGGG
1 AGCATTTTAGTTTCCAAAAATTACAAA-ACCTCTAGTGGG
12084883 AAAGAGCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 20 0.57
42 15 0.43
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Consensus pattern (42 bp):
AGCATTTTAGTTTCCAAAAATTACAAAACCTCTAGTGGGGGT
Found at i:12084880 original size:83 final size:83
Alignment explanation
Indices: 12084725--12084913 Score: 206
Period size: 84 Copynumber: 2.3 Consensus size: 83
12084715 AAATCCTAGC
* *
12084725 TTTTAATTTT-CAAAAGTTTCAAAGCCCCAGTGGGGGAGCACTTTAAATTTCAAAAGTTTCAAAG
1 TTTT-ATTTTCCAAAAGTTTCAAAACCCCAGTGGGGGAGCACTTTAAATTTCAAAAGTTACAAAG
* * *
12084789 CCTTTAGTGAG-AGGAGCA
65 ACTCTAGTGAGAAAGAGCA
* * * *
12084807 TTTTATTTTCCAAAAATTTCAAAACCTCTAGTGGGGGTAGCA-TTTTAGTTTCCAAAA-TTACAA
1 TTTTATTTTCCAAAAGTTTCAAAACC-CCAGTGGGGG-AGCACTTTAAATTT-CAAAAGTTACAA
*
12084870 AGACTCTAGTGGGAAAGAGCA
63 AGACTCTAGTGAGAAAGAGCA
* *
12084891 TTTAATTTTCTAAAAGTTTCAAA
1 TTTTATTTTCCAAAAGTTTCAAA
12084914 GCCTTCGATG
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
81 5 0.06
82 18 0.20
83 31 0.35
84 35 0.39
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.33
Consensus pattern (83 bp):
TTTTATTTTCCAAAAGTTTCAAAACCCCAGTGGGGGAGCACTTTAAATTTCAAAAGTTACAAAGA
CTCTAGTGAGAAAGAGCA
Found at i:12085060 original size:41 final size:40
Alignment explanation
Indices: 12084986--12085062 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
12084976 TAAATTTTCA
* *
12084986 AAGTTTCAAAGCCCTTAGTAAAGGGAGCATTTTTTAATTC
1 AAGTTTCAAAGCCCTTACTAAAGGGACCATTTTTTAATTC
* *
12085026 AAGTTTCAAAGCCTTTACTAAAGGGAACCCTTTTTTA
1 AAGTTTCAAAGCCCTTACTAAAGGG-ACCATTTTTTA
12085063 TTTTTCTTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 23 0.72
41 9 0.28
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (40 bp):
AAGTTTCAAAGCCCTTACTAAAGGGACCATTTTTTAATTC
Found at i:12085337 original size:17 final size:18
Alignment explanation
Indices: 12085305--12085338 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12085295 ACATAAATTT
*
12085305 TGATTTTTTTTAAGATTG
1 TGATTTTATTTAAGATTG
12085323 TGATTTTATTT-AGATT
1 TGATTTTATTTAAGATT
12085339 TGAAATTTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.00, G:0.15, T:0.62
Consensus pattern (18 bp):
TGATTTTATTTAAGATTG
Found at i:12085828 original size:4 final size:4
Alignment explanation
Indices: 12085821--12085873 Score: 72
Period size: 4 Copynumber: 13.5 Consensus size: 4
12085811 TTTTTTTGAC
* * *
12085821 TTAT TTAT TTCT ATAT TTAT TTAT TTAT TCA- TTAT TTAT TTAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
12085868 TTAT TT
1 TTAT TT
12085874 TCTGTTGATT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
3 2 0.05
4 40 0.95
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:12085858 original size:19 final size:19
Alignment explanation
Indices: 12085821--12085868 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
12085811 TTTTTTTGAC
12085821 TTATTTATTTCTATATTTAT
1 TTATTTA-TTCTATATTTAT
12085841 TTATTTATTC-ATTATTTAT
1 TTATTTATTCTA-TATTTAT
12085860 TTATTTATT
1 TTATTTATT
12085869 TATTTTCTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.04
19 19 0.70
20 7 0.26
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (19 bp):
TTATTTATTCTATATTTAT
Found at i:12085948 original size:19 final size:19
Alignment explanation
Indices: 12085924--12085960 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
12085914 AATTAGATTG
* *
12085924 TTAGAAAGTGTGAATATAT
1 TTAGAAAATGTAAATATAT
12085943 TTAGAAAATGTAAATATA
1 TTAGAAAATGTAAATATA
12085961 GTATAATTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.35
Consensus pattern (19 bp):
TTAGAAAATGTAAATATAT
Found at i:12089959 original size:29 final size:29
Alignment explanation
Indices: 12089906--12089964 Score: 68
Period size: 29 Copynumber: 2.0 Consensus size: 29
12089896 AATTATAGTG
*
12089906 AAATATTTAATATGATACTTTAACTTTAA
1 AAATATTTAATATGATACTTTAACTATAA
*
12089935 AAATCTTTAATAT-AGTA-TTTAAACTATAA
1 AAATATTTAATATGA-TACTTT-AACTATAA
12089964 A
1 A
12089965 TATGTTCATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 4 0.15
29 22 0.85
ACGTcount: A:0.47, C:0.07, G:0.03, T:0.42
Consensus pattern (29 bp):
AAATATTTAATATGATACTTTAACTATAA
Found at i:12090556 original size:15 final size:14
Alignment explanation
Indices: 12090524--12090561 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
12090514 AATTGAGTTT
12090524 CTTTA-TTTTTTTA
1 CTTTATTTTTTTTA
*
12090537 TTTTATTTTTTTGTA
1 CTTTATTTTTTT-TA
12090552 CTTTATTTTT
1 CTTTATTTTT
12090562 CAAACTAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 4 0.19
14 6 0.29
15 11 0.52
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (14 bp):
CTTTATTTTTTTTA
Found at i:12091487 original size:19 final size:21
Alignment explanation
Indices: 12091438--12091487 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 21
12091428 TTATAAATTA
12091438 TTTATATATTTAATTAAATAT
1 TTTATATATTTAATTAAATAT
*
12091459 TTTAAATATTTAA-TAAA-AT
1 TTTATATATTTAATTAAATAT
*
12091478 TTTATTTATT
1 TTTATATATT
12091488 CATGAATGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
19 10 0.38
20 4 0.15
21 12 0.46
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TTTATATATTTAATTAAATAT
Found at i:12094484 original size:19 final size:19
Alignment explanation
Indices: 12094449--12094486 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
12094439 ACATGCATCA
*
12094449 CGAAAAATAGTGGCATTTT
1 CGAAAAATAGTGCCATTTT
12094468 CGAAAAAT-GTCGCCATTTT
1 CGAAAAATAGT-GCCATTTT
12094487 AGCGGCGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 2 0.12
19 15 0.88
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (19 bp):
CGAAAAATAGTGCCATTTT
Found at i:12094794 original size:120 final size:120
Alignment explanation
Indices: 12094562--12094795 Score: 317
Period size: 120 Copynumber: 1.9 Consensus size: 120
12094552 TTTGGTAGTG
* * * * * * * * *
12094562 TTTGTAACTGAAAATGTCATTACTTTATATGCATTTGTCTCTGAAAATGCCTTTATATTAGTGGC
1 TTTGTAACTAAAAATGCCACTACTTTAGAGGCATTTGTATATGAAAATGCCTATATATTAGTAGC
* * *
12094627 ATTTGTATCTTTGAGATACCGTTAATTTAGTGGCATTTTTATGAGAAAAATGCCA
66 ATTTGTAGCTTGGAGATACCATTAATTTAGTGGCATTTTTATGAGAAAAATGCCA
*
12094682 TTTGTAACTAAAAATGCCACTACTTTAGAGGCGTTTGTATATGAAAATGCCTATATATTAGTAGC
1 TTTGTAACTAAAAATGCCACTACTTTAGAGGCATTTGTATATGAAAATGCCTATATATTAGTAGC
* *
12094747 ATTTGT-GCTTGGATATGCCATTAATTTAGTGGCATTTTTATGAAGAAAA
66 ATTTGTAGCTTGGAGATACCATTAATTTAGTGGCATTTTTATG-AGAAAA
12094796 CATTGTTGCT
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
119 31 0.32
120 67 0.68
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (120 bp):
TTTGTAACTAAAAATGCCACTACTTTAGAGGCATTTGTATATGAAAATGCCTATATATTAGTAGC
ATTTGTAGCTTGGAGATACCATTAATTTAGTGGCATTTTTATGAGAAAAATGCCA
Found at i:12100963 original size:54 final size:54
Alignment explanation
Indices: 12100904--12101010 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 54
12100894 TTTTTGACAC
*
12100904 ATACCTCATCACCATTCTCATTCAACCTTTCATCAGAGTTTTTGTCCACCCAAG
1 ATACCTCATCACCATTCTCATTCAACCTTTCATCAGAGTTTTTATCCACCCAAG
* *
12100958 ATACCTCATCACCATTCTCATTCAACCTTTTATCGGAGTTTTTATCCACCCAA
1 ATACCTCATCACCATTCTCATTCAACCTTTCATCAGAGTTTTTATCCACCCAA
12101011 TGAGAAATAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.26, C:0.33, G:0.07, T:0.35
Consensus pattern (54 bp):
ATACCTCATCACCATTCTCATTCAACCTTTCATCAGAGTTTTTATCCACCCAAG
Found at i:12103536 original size:169 final size:170
Alignment explanation
Indices: 12103245--12103556 Score: 382
Period size: 169 Copynumber: 1.8 Consensus size: 170
12103235 CGTATATTCA
** * * * *
12103245 AGAAAAATGCCTTTAATAATTCTTTTTTAATTTTGTAGATAATTATTGAAGGTATTTTTAGATAA
1 AGAAAAATGCCTTTAATAATTC-TTTTTAAACTAGTACATAATTATTAAAGGCATTTTTAGATAA
* * * *** *
12103310 TAACCGCCATCAATAATTTTCTCTTAAAAAATTTTTGGGATCATTAAAGGCGTCTTCTACTAGA-
65 CAACCGCCATCAATAATTTCCTCTTAAAAAAATTTTAAAATCATTAAAAGCGTCTTCTA-TAGAC
12103374 AAATGCCTTAAATACACCATGGTTATAGAAGGTGTTTATTTT
129 AAATGCCTTAAATACACCATGGTTATAGAAGGTGTTTATTTT
12103416 AGAAAAATGCCTTTAATAATTC-TTTTAAACTAGTACATAATTATTAAAGGCATTTGTTA-ATAA
1 AGAAAAATGCCTTTAATAATTCTTTTTAAACTAGTACATAATTATTAAAGGCATTT-TTAGATAA
* * * *
12103479 C-ACACGCCTTCAATAATTTCC-CTCTAAAAAAATTTTAAAATTATTAAAAGTGTCTTCTATTGA
65 CAAC-CGCCATCAATAATTTCCTCT-TAAAAAAATTTTAAAATCATTAAAAGCGTCTTCTATAGA
*
12103542 CAAATGCCTTCAATA
128 CAAATGCCTTAAATA
12103557 AATAAATTTT
Statistics
Matches: 119, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
168 7 0.06
169 87 0.73
170 3 0.03
171 22 0.18
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.38
Consensus pattern (170 bp):
AGAAAAATGCCTTTAATAATTCTTTTTAAACTAGTACATAATTATTAAAGGCATTTTTAGATAAC
AACCGCCATCAATAATTTCCTCTTAAAAAAATTTTAAAATCATTAAAAGCGTCTTCTATAGACAA
ATGCCTTAAATACACCATGGTTATAGAAGGTGTTTATTTT
Found at i:12104956 original size:80 final size:80
Alignment explanation
Indices: 12104856--12105100 Score: 330
Period size: 80 Copynumber: 3.1 Consensus size: 80
12104846 CTTAAATATT
* * * *
12104856 ATGGTTTGCTGAACTTTGTTGTCTGATATTTTTTTGCTAAATGGTATTGTATGATATTGGGGGGC
1 ATGGTTTGTTGAACCTTGTTGTCTGATATTATTTTGCTGAATGGTATTGTATGATATTGGGGGGC
*
12104921 TGAATCGTATGCTAA
66 TGAATCGTATGCTGA
* *
12104936 ATGGTTTGTTGAACCTTGTTGTATGATATTATATTG-TCGAATGGTATTGTATGATATTGGGGGG
1 ATGGTTTGTTGAACCTTGTTGTCTGATATTATTTTGCT-GAATGGTATTGTATGATATTGGGGGG
*
12105000 CTGAATCATATGCTGA
65 CTGAATCGTATGCTGA
* * * * * * **
12105016 ATGGTTTGTTGAACCTTGTTGTCTAATACTGTTTTGCTGAATGATTTTGTATGAAATTAAGGGGC
1 ATGGTTTGTTGAACCTTGTTGTCTGATATTATTTTGCTGAATGGTATTGTATGATATTGGGGGGC
12105081 TGAATCGTATGCTGA
66 TGAATCGTATGCTGA
12105096 ATGGT
1 ATGGT
12105101 GTTTCTAAGT
Statistics
Matches: 144, Mismatches: 19, Indels: 4
0.86 0.11 0.02
Matches are distributed among these distances:
79 1 0.01
80 142 0.99
81 1 0.01
ACGTcount: A:0.23, C:0.09, G:0.27, T:0.42
Consensus pattern (80 bp):
ATGGTTTGTTGAACCTTGTTGTCTGATATTATTTTGCTGAATGGTATTGTATGATATTGGGGGGC
TGAATCGTATGCTGA
Found at i:12109883 original size:17 final size:18
Alignment explanation
Indices: 12109856--12109889 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
12109846 ATAAATATAT
12109856 TTTATTTATTTAAAAAAA
1 TTTATTTATTTAAAAAAA
12109874 TTTA-TTATTTAAAAAA
1 TTTATTTATTTAAAAAA
12109890 TAATTAGTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATTTATTTAAAAAAA
Found at i:12110352 original size:22 final size:20
Alignment explanation
Indices: 12110305--12110352 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
12110295 GTGTCCATAA
12110305 ATTAA-TACAAAATTTTATT
1 ATTAATTACAAAATTTTATT
12110324 ATTAATTACATAAATGTTT-TT
1 ATTAATTACA-AAAT-TTTATT
12110345 CATTAATT
1 -ATTAATT
12110353 GGCTACCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 5 0.20
20 4 0.16
21 6 0.24
22 10 0.40
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (20 bp):
ATTAATTACAAAATTTTATT
Found at i:12113083 original size:9 final size:9
Alignment explanation
Indices: 12113069--12113102 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
12113059 TAAATTATCC
12113069 TTATCCTTA
1 TTATCCTTA
12113078 TTATCCTTA
1 TTATCCTTA
12113087 TTATCCTTA
1 TTATCCTTA
12113096 TTA-CCTT
1 TTATCCTT
12113103 TCTTCTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 4 0.16
9 21 0.84
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.56
Consensus pattern (9 bp):
TTATCCTTA
Found at i:12118352 original size:26 final size:26
Alignment explanation
Indices: 12118294--12118352 Score: 109
Period size: 26 Copynumber: 2.3 Consensus size: 26
12118284 TAGCTAAGGA
*
12118294 ATTTGCCAATGTTATATCAAAGGCAC
1 ATTTGCTAATGTTATATCAAAGGCAC
12118320 ATTTGCTAATGTTATATCAAAGGCAC
1 ATTTGCTAATGTTATATCAAAGGCAC
12118346 ATTTGCT
1 ATTTGCT
12118353 TAGGTTAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (26 bp):
ATTTGCTAATGTTATATCAAAGGCAC
Found at i:12118359 original size:26 final size:26
Alignment explanation
Indices: 12118294--12118359 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 26
12118284 TAGCTAAGGA
* *
12118294 ATTTGCCAATGTTATATCAAAGGCAC
1 ATTTGCTAAGGTTATATCAAAGGCAC
*
12118320 ATTTGCTAATGTTATATCAAAGGCAC
1 ATTTGCTAAGGTTATATCAAAGGCAC
*
12118346 ATTTGCTTAGGTTA
1 ATTTGCTAAGGTTA
12118360 AATCTCATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (26 bp):
ATTTGCTAAGGTTATATCAAAGGCAC
Found at i:12134572 original size:88 final size:86
Alignment explanation
Indices: 12134469--12134642 Score: 226
Period size: 88 Copynumber: 2.0 Consensus size: 86
12134459 CTAATATCTA
* * *
12134469 TAATTTCAACAAAGATAA-ATTTTTTTAGATAAAATACTATATTTTTGTTGAAAGTATAGA-TTG
1 TAATTTCAACAAAGATAACATTTTTATAGATAAAAT-CT-TATTTTTATTGAAAGTATAGATTTA
12134532 AAATTTTTTAATTTTTCAAATTTTT
64 AAATTTTTTAATTTTT--AATTTTT
* * ** *
12134557 TAATTTTAATAAAGATAACATTTTTATCTATAAAATGTTATTTTTATTGAAAGTATAGATTTAAA
1 TAATTTCAACAAAGATAACATTTTTATAGATAAAATCTTATTTTTATTGAAAGTATAGATTTAAA
12134622 ATTTTTTAATTTTTAATTTTT
66 ATTTTTTAATTTTTAATTTTT
12134643 AAAATTTCTA
Statistics
Matches: 76, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
86 7 0.09
87 20 0.26
88 35 0.46
89 14 0.18
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (86 bp):
TAATTTCAACAAAGATAACATTTTTATAGATAAAATCTTATTTTTATTGAAAGTATAGATTTAAA
ATTTTTTAATTTTTAATTTTT
Found at i:12135143 original size:21 final size:19
Alignment explanation
Indices: 12135128--12135173 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
12135118 AATATTTGAC
*
12135128 ATATTTAATTATATATATA
1 ATATATAATTATATATATA
*
12135147 ATATATAATTATATAAAT-
1 ATATATAATTATATATATA
12135165 ATAT-TAATT
1 ATATATAATT
12135174 CTAACTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 5 0.20
18 4 0.16
19 16 0.64
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
ATATATAATTATATATATA
Found at i:12139639 original size:22 final size:22
Alignment explanation
Indices: 12139614--12139659 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
12139604 GAATGGCAGG
12139614 ATCTACAAAGTATGAAGTACCT
1 ATCTACAAAGTATGAAGTACCT
*
12139636 ATCTACAGAGTATGAAGTACCT
1 ATCTACAAAGTATGAAGTACCT
12139658 AT
1 AT
12139660 ATTTAGACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (22 bp):
ATCTACAAAGTATGAAGTACCT
Found at i:12141868 original size:14 final size:15
Alignment explanation
Indices: 12141837--12141869 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12141827 CTCTTTTTAG
12141837 ATTTTACCTTTCTTT
1 ATTTTACCTTTCTTT
*
12141852 ATTTTTCCTTT-TTT
1 ATTTTACCTTTCTTT
12141866 ATTT
1 ATTT
12141870 GTTTTTACCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTACCTTTCTTT
Found at i:12146540 original size:29 final size:30
Alignment explanation
Indices: 12146503--12146565 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
12146493 AAGAATTGAT
12146503 TTTATTATT-TTTTAA-TACATTAAAGAATA
1 TTTATTATTCTTTTAATTACATTAAAGAA-A
* *
12146532 TTTATTATTCTTTTAATTTCATTAAGGAAA
1 TTTATTATTCTTTTAATTACATTAAAGAAA
12146562 TTTA
1 TTTA
12146566 AAATTTTCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 9 0.30
30 11 0.37
31 10 0.33
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (30 bp):
TTTATTATTCTTTTAATTACATTAAAGAAA
Found at i:12147145 original size:24 final size:24
Alignment explanation
Indices: 12147117--12147176 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 24
12147107 AACATTAGTC
12147117 AAATCATAATGTCAAATATTTCAA
1 AAATCATAATGTCAAATATTTCAA
*
12147141 AAATCATCATTATGTCAAATATTTCAT
1 AAATCAT-A--ATGTCAAATATTTCAA
*
12147168 AGATCATAA
1 AAATCATAA
12147177 ATCAATATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 8 0.26
25 1 0.03
26 1 0.03
27 21 0.68
ACGTcount: A:0.47, C:0.13, G:0.05, T:0.35
Consensus pattern (24 bp):
AAATCATAATGTCAAATATTTCAA
Found at i:12152590 original size:34 final size:34
Alignment explanation
Indices: 12152552--12152631 Score: 142
Period size: 34 Copynumber: 2.4 Consensus size: 34
12152542 CTAACTATTC
*
12152552 TAACCTGCTAGCCAAGACCTTACACTAACTGATA
1 TAACCTGTTAGCCAAGACCTTACACTAACTGATA
12152586 TAACCTGTTAGCCAAGACCTTACACTAACTGATA
1 TAACCTGTTAGCCAAGACCTTACACTAACTGATA
*
12152620 TAGCCTGTTAGC
1 TAACCTGTTAGC
12152632 AAGGTTGTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
34 44 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (34 bp):
TAACCTGTTAGCCAAGACCTTACACTAACTGATA
Found at i:12154108 original size:31 final size:31
Alignment explanation
Indices: 12154073--12154168 Score: 87
Period size: 31 Copynumber: 3.3 Consensus size: 31
12154063 AATTATTACA
12154073 TGAGTTGAGTATTACAATTACATTCTTAAAC
1 TGAGTTGAGTATTACAATTACATTCTTAAAC
* * * * *
12154104 TGAGTTGA-CA--A-AAATAAATTATTACA-
1 TGAGTTGAGTATTACAATTACATTCTTAAAC
*
12154130 TGAGTT-AGGTATTACAATTACATTCTTGAAC
1 TGAGTTGA-GTATTACAATTACATTCTTAAAC
12154161 TGAGTTGA
1 TGAGTTGA
12154169 CAAAAATAAA
Statistics
Matches: 47, Mismatches: 11, Indels: 13
0.66 0.15 0.18
Matches are distributed among these distances:
25 1 0.02
26 6 0.13
27 12 0.26
28 1 0.02
29 1 0.02
30 11 0.23
31 14 0.30
32 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (31 bp):
TGAGTTGAGTATTACAATTACATTCTTAAAC
Found at i:12154127 original size:57 final size:57
Alignment explanation
Indices: 12154063--12154178 Score: 207
Period size: 57 Copynumber: 2.0 Consensus size: 57
12154053 AATTTACCTC
12154063 AATTATTACATGAGTT-GAGTATTACAATTACATTCTTAAACTGAGTTGACAAAAATA
1 AATTATTACATGAGTTAG-GTATTACAATTACATTCTTAAACTGAGTTGACAAAAATA
*
12154120 AATTATTACATGAGTTAGGTATTACAATTACATTCTTGAACTGAGTTGACAAAAATA
1 AATTATTACATGAGTTAGGTATTACAATTACATTCTTAAACTGAGTTGACAAAAATA
12154177 AA
1 AA
12154179 GGATCCGGTC
Statistics
Matches: 57, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
57 56 0.98
58 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.13, T:0.34
Consensus pattern (57 bp):
AATTATTACATGAGTTAGGTATTACAATTACATTCTTAAACTGAGTTGACAAAAATA
Found at i:12155185 original size:50 final size:50
Alignment explanation
Indices: 12155114--12155210 Score: 117
Period size: 50 Copynumber: 1.9 Consensus size: 50
12155104 TATATACGTC
* * *
12155114 ATTTATTGAATCATTCACTTAT-TGAATTTTACATTACTTATAAAAGATAA
1 ATTTATTGAAGCATTCACTTATAT-AAGTTTACATTACTTACAAAAGATAA
* *
12155164 ATTTATTGAAGGATTTC-CTTATATAAGTTTATATTACTTACAAAAGA
1 ATTTATTGAAGCA-TTCACTTATATAAGTTTACATTACTTACAAAAGA
12155211 CCATTTATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 36 0.90
51 4 0.10
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.43
Consensus pattern (50 bp):
ATTTATTGAAGCATTCACTTATATAAGTTTACATTACTTACAAAAGATAA
Found at i:12155780 original size:36 final size:36
Alignment explanation
Indices: 12155727--12155806 Score: 105
Period size: 36 Copynumber: 2.3 Consensus size: 36
12155717 AATATATTGA
*
12155727 AATTAT-TTATTATTAATAATA-TTAATATTCAAGAAT
1 AATTATATTATTAATAATAATATTTAATATT-AA-AAT
12155763 AATTATATT-TTAATAATAATATTTAATATTAAAAT
1 AATTATATTATTAATAATAATATTTAATATTAAAAT
12155798 -ATTATATTA
1 AATTATATTA
12155807 ATATAAAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
34 8 0.20
35 3 0.08
36 19 0.47
37 10 0.25
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (36 bp):
AATTATATTATTAATAATAATATTTAATATTAAAAT
Found at i:12155807 original size:19 final size:18
Alignment explanation
Indices: 12155741--12155817 Score: 61
Period size: 19 Copynumber: 4.2 Consensus size: 18
12155731 ATTTATTATT
12155741 AATAATA-TTAATATTCAA
1 AATAATATTTAATATT-AA
* *
12155759 GAATAAT-TAT-ATTTTAA
1 -AATAATATTTAATATTAA
12155776 TAATAATATTTAATATTAA
1 -AATAATATTTAATATTAA
* *
12155795 AATATTATATTAATATAAA
1 AATAATAT-TTAATATTAA
12155814 AATA
1 AATA
12155818 CTTAAATAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
17 8 0.17
18 13 0.28
19 26 0.55
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (18 bp):
AATAATATTTAATATTAA
Found at i:12155880 original size:20 final size:20
Alignment explanation
Indices: 12155857--12155898 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
12155847 ATTAATAACT
12155857 TTAAAATAT-TTAAAATAGTA
1 TTAAAAT-TCTTAAAATAGTA
* *
12155877 TTAATATTCTTAAAATATTA
1 TTAAAATTCTTAAAATAGTA
12155897 TT
1 TT
12155899 TTTACTAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (20 bp):
TTAAAATTCTTAAAATAGTA
Found at i:12155962 original size:22 final size:22
Alignment explanation
Indices: 12155936--12155985 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
12155926 TTTTATAAAA
*
12155936 ATATTATACTATT-AAAATATTT
1 ATATTATA-TATTGAAAATATCT
* *
12155958 ATATTTTATATTGAAAGTATCT
1 ATATTATATATTGAAAATATCT
12155980 ATATTA
1 ATATTA
12155986 AATCTTAACA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (22 bp):
ATATTATATATTGAAAATATCT
Found at i:12156242 original size:29 final size:29
Alignment explanation
Indices: 12156162--12156227 Score: 91
Period size: 28 Copynumber: 2.3 Consensus size: 29
12156152 TAAAATAATA
* * *
12156162 AAAATATTATTAT-ATAATATTTATTATT
1 AAAATAATAATATAATACTATTTATTATT
12156190 AAAATAATAATATAATACTATTTATTATT
1 AAAATAATAATATAATACTATTTATTATT
12156219 -AAATAATAA
1 AAAATAATAA
12156228 AAATATTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 20 0.59
29 14 0.41
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (29 bp):
AAAATAATAATATAATACTATTTATTATT
Found at i:12156354 original size:20 final size:18
Alignment explanation
Indices: 12156320--12156356 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
12156310 TTTATTTAAA
12156320 ATTAAATAAAATATTTTC
1 ATTAAATAAAATATTTTC
12156338 ATTAATATAATAATATTTT
1 ATTAA-ATAA-AATATTTT
12156357 AAGTCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTAAATAAAATATTTTC
Found at i:12156498 original size:13 final size:13
Alignment explanation
Indices: 12156462--12156504 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
12156452 TTTTAATGTT
* *
12156462 AATATTTTAAATA
1 AATATTATATATA
*
12156475 AA-ATTAAATATA
1 AATATTATATATA
12156487 AATATTATATATA
1 AATATTATATATA
12156500 AATAT
1 AATAT
12156505 AATAATATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 9 0.36
13 16 0.64
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
AATATTATATATA
Found at i:12156863 original size:22 final size:22
Alignment explanation
Indices: 12156835--12156879 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
12156825 CAAAATAACC
12156835 ATGTCATCTACCACGGATGTGA
1 ATGTCATCTACCACGGATGTGA
12156857 ATGTCATCTACCACGGATGTGA
1 ATGTCATCTACCACGGATGTGA
12156879 A
1 A
12156880 GGATGCTAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (22 bp):
ATGTCATCTACCACGGATGTGA
Found at i:12162646 original size:21 final size:21
Alignment explanation
Indices: 12162622--12162665 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
12162612 TAGAGGTTAA
12162622 AGCTTGACAGTAAAGCCACAC
1 AGCTTGACAGTAAAGCCACAC
12162643 AGCTTGACAGTAAAGCCACAC
1 AGCTTGACAGTAAAGCCACAC
12162664 AG
1 AG
12162666 TATGTGTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.27, G:0.20, T:0.14
Consensus pattern (21 bp):
AGCTTGACAGTAAAGCCACAC
Found at i:12167090 original size:123 final size:123
Alignment explanation
Indices: 12166871--12167098 Score: 402
Period size: 123 Copynumber: 1.9 Consensus size: 123
12166861 TATTCAGCTG
* *
12166871 TGTACTCCTAAGTGATCTTTGACTTTAATAAAAGTTATAGTAAGACCAAACAATTAATTCATCTT
1 TGTACTCCTAAGTGATCTTTGACTTAAATAAAAGTTATAGTAAAACCAAACAATTAATTCATCTT
12166936 GAAAATGAAATGATATATGATATTATTTCATAGGGCATGCAGTACGAATGTTCGGCTA
66 GAAAATGAAATGATATATGATATTATTTCATAGGGCATGCAGTACGAATGTTCGGCTA
* ** *
12166994 TGTACTCTTAAGTGATCTTTGACTTAAATAAAAGTTATTTTAAAACCAAACAATTTATTCATCTT
1 TGTACTCCTAAGTGATCTTTGACTTAAATAAAAGTTATAGTAAAACCAAACAATTAATTCATCTT
12167059 GAAAATGAAATGATATATGATATTATTTCATAGGGCATGC
66 GAAAATGAAATGATATATGATATTATTTCATAGGGCATGC
12167099 CATACTATTG
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
123 99 1.00
ACGTcount: A:0.37, C:0.12, G:0.14, T:0.36
Consensus pattern (123 bp):
TGTACTCCTAAGTGATCTTTGACTTAAATAAAAGTTATAGTAAAACCAAACAATTAATTCATCTT
GAAAATGAAATGATATATGATATTATTTCATAGGGCATGCAGTACGAATGTTCGGCTA
Found at i:12169618 original size:51 final size:51
Alignment explanation
Indices: 12169506--12169651 Score: 186
Period size: 51 Copynumber: 2.8 Consensus size: 51
12169496 AACTTGCAAA
* * *
12169506 AGAAGAATTCTAAGA-GAAAGAGGATTTTTAATAGTTAAGTTTGACCTGTAAG
1 AGAAGAATTCTAAGAGGAAAGA-GATTCTTAATAG-CAAGTTTGACCTATAAG
* * *
12169558 AGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGCAAGTTTGACTTATAGG
1 AGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGCAAGTTTGACCTATAAG
* *
12169609 AGAAGAATTCTAAGAGGAGAGAGATTCTTAATGGGCAAGTTTG
1 AGAAGAATTCTAAGAGGAAAGAGATTCTTAAT-AGCAAGTTTG
12169652 TATGGTTATA
Statistics
Matches: 83, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
51 43 0.52
52 34 0.41
53 6 0.07
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (51 bp):
AGAAGAATTCTAAGAGGAAAGAGATTCTTAATAGCAAGTTTGACCTATAAG
Found at i:12170233 original size:25 final size:25
Alignment explanation
Indices: 12170188--12170313 Score: 89
Period size: 25 Copynumber: 5.1 Consensus size: 25
12170178 AAGTGGTATC
*
12170188 AGAGCTGAATGATTGAA-ATGTGAGA
1 AGAGCTGAA-GATTCAAGATGTGAGA
*
12170213 AGAGTTGAAGATTCAAGATGTG-GAA
1 AGAGCTGAAGATTCAAGATGTGAG-A
* * *
12170238 AGAGCCGAAGGTTCGAGATGTGA-A
1 AGAGCTGAAGATTCAAGATGTGAGA
* * *
12170262 AAAGCTGAA-AGTTCGAGATGTGGGA
1 AGAGCTGAAGA-TTCAAGATGTGAGA
* * * *
12170287 AGAGCTAAAGGTTTAAGATGTGGGA
1 AGAGCTGAAGATTCAAGATGTGAGA
12170312 AG
1 AG
12170314 TGCATGGTTT
Statistics
Matches: 80, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
24 26 0.32
25 54 0.68
ACGTcount: A:0.37, C:0.06, G:0.35, T:0.21
Consensus pattern (25 bp):
AGAGCTGAAGATTCAAGATGTGAGA
Found at i:12170275 original size:24 final size:24
Alignment explanation
Indices: 12170228--12170283 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
12170218 TGAAGATTCA
* *
12170228 AGATGTGGAAAGAGCCGAAGGTTCG
1 AGATGT-GAAAAAGCCGAAAGTTCG
*
12170253 AGATGTGAAAAAGCTGAAAGTTCG
1 AGATGTGAAAAAGCCGAAAGTTCG
12170277 AGATGTG
1 AGATGTG
12170284 GGAAGAGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 22 0.79
25 6 0.21
ACGTcount: A:0.36, C:0.09, G:0.36, T:0.20
Consensus pattern (24 bp):
AGATGTGAAAAAGCCGAAAGTTCG
Found at i:12170568 original size:11 final size:11
Alignment explanation
Indices: 12170552--12170593 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
12170542 AATCTCATAA
12170552 GAGATTTGTTT
1 GAGATTTGTTT
*
12170563 GAGATTTGTTA
1 GAGATTTGTTT
12170574 GAGATTTGTTT
1 GAGATTTGTTT
*
12170585 AAGATTTGT
1 GAGATTTGT
12170594 CAGATATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:12170576 original size:22 final size:22
Alignment explanation
Indices: 12170551--12170593 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
12170541 AAATCTCATA
*
12170551 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTAAGATTTGTT
12170573 AGAGATTTGTTTAAGATTTGT
1 AGAGATTTGTTTAAGATTTGT
12170594 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTAAGATTTGTT
Found at i:12170687 original size:52 final size:52
Alignment explanation
Indices: 12170619--12170747 Score: 152
Period size: 52 Copynumber: 2.5 Consensus size: 52
12170609 GGACAAAAAG
* * * *
12170619 ACTTACAAAAGAAGAATTCTAAGAG-AAAGATGACTCTTAATAGTTAAGTTTA
1 ACTTACAAGAGAAGAATTCTAAGAGAAAAG-GGACTCTTAATAGGTAAATTTA
* * * *
12170671 ACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGTAAATTTG
1 ACTTACAAGAGAAGAATTCTAAGAGAAAAGGGACTCTTAATAGGTAAATTTA
* *
12170723 TCTTACAGGAGAAGAATTCTAAGAG
1 ACTTACAAGAGAAGAATTCTAAGAG
12170748 GAGAAGGATT
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
52 60 0.94
53 4 0.06
ACGTcount: A:0.44, C:0.09, G:0.19, T:0.27
Consensus pattern (52 bp):
ACTTACAAGAGAAGAATTCTAAGAGAAAAGGGACTCTTAATAGGTAAATTTA
Found at i:12170757 original size:52 final size:50
Alignment explanation
Indices: 12170619--12170763 Score: 146
Period size: 52 Copynumber: 2.8 Consensus size: 50
12170609 GGACAAAAAG
* * * *
12170619 ACTTACAAAAGAAGAATTCTAAGAGAAAGATGACTCTTAATAGTTAAGTTTA
1 ACTTACAAGAGAAGAATTCTAAGAGAAAG--GATTCTTAATAGGTAAATTTA
* * *
12170671 ACTTGCAAGAGAAGAATTCTAAAAGAAAAGGGATTCTTAATAGGTAAATTTG
1 ACTTACAAGAGAAGAATTCTAAGAG-AAA-GGATTCTTAATAGGTAAATTTA
* * *
12170723 TCTTACAGGAGAAGAATTCTAAGAGGAGAAGGATTTTTAAT
1 ACTTACAAGAGAAGAATTCTAAGA-GA-AAGGATTCTTAAT
12170764 GGACAAGTTT
Statistics
Matches: 77, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
52 70 0.91
53 6 0.08
54 1 0.01
ACGTcount: A:0.43, C:0.08, G:0.20, T:0.28
Consensus pattern (50 bp):
ACTTACAAGAGAAGAATTCTAAGAGAAAGGATTCTTAATAGGTAAATTTA
Found at i:12176357 original size:24 final size:22
Alignment explanation
Indices: 12176330--12176380 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
12176320 TTTTCACCTC
12176330 TTTTCCAGATTTTTTTTTTCTTTT
1 TTTTCCA-ATTTTTTTTTT-TTTT
*
12176354 TTTTTCAATTTTTTTTTTTTTT
1 TTTTCCAATTTTTTTTTTTTTT
*
12176376 ATTTC
1 TTTTC
12176381 ATCTTTTGGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 7 0.29
23 11 0.46
24 6 0.25
ACGTcount: A:0.10, C:0.10, G:0.02, T:0.78
Consensus pattern (22 bp):
TTTTCCAATTTTTTTTTTTTTT
Found at i:12176387 original size:20 final size:22
Alignment explanation
Indices: 12176342--12176387 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
12176332 TTCCAGATTT
*
12176342 TTTTTTTCTTTTTTTTTCAAT-
1 TTTTTTTCTTTTTATTTCAATC
*
12176363 TTTTTTTTTTTTTATTTC-ATC
1 TTTTTTTCTTTTTATTTCAATC
12176384 TTTT
1 TTTT
12176388 GGGTGTGCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTTTCTTTTTATTTCAATC
Found at i:12176387 original size:22 final size:22
Alignment explanation
Indices: 12176340--12176381 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
12176330 TTTTCCAGAT
*
12176340 TTTTTTTTTCTTTTTTTTTCAA
1 TTTTTTTTTCTTTTTATTTCAA
12176362 TTTTTTTTT-TTTTTATTTCA
1 TTTTTTTTTCTTTTTATTTCA
12176382 TCTTTTGGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.10, C:0.07, G:0.00, T:0.83
Consensus pattern (22 bp):
TTTTTTTTTCTTTTTATTTCAA
Found at i:12185481 original size:19 final size:19
Alignment explanation
Indices: 12185437--12185483 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
12185427 ATAAATCATA
*
12185437 TAAAAAATATTACTTTCTC
1 TAAAAAATACTACTTTCTC
*
12185456 TAGAAAAA-ACTACTTTCTA
1 TA-AAAAATACTACTTTCTC
*
12185475 TTAAAAATA
1 TAAAAAATA
12185484 TTAAATACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (19 bp):
TAAAAAATACTACTTTCTC
Found at i:12185529 original size:14 final size:14
Alignment explanation
Indices: 12185512--12185542 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
12185502 TCCCTTTTTC
*
12185512 AAATATATTTTGTA
1 AAATATATTTTATA
12185526 AAATATATTTTATA
1 AAATATATTTTATA
12185540 AAA
1 AAA
12185543 AAGAAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (14 bp):
AAATATATTTTATA
Found at i:12186196 original size:33 final size:33
Alignment explanation
Indices: 12186096--12186210 Score: 112
Period size: 32 Copynumber: 3.5 Consensus size: 33
12186086 TAATAAATCG
*
12186096 ATTTGTTT-AAATGATAT-GAAAATTTTTAC-TCA
1 ATTT-TTTAAAATGATATAG-AAATTTTTACTTAA
* * * ** *
12186128 ATATTTTAAAAAGATATGGAGTTTTTTA-TTTA
1 ATTTTTTAAAATGATATAGAAATTTTTACTTAA
*
12186160 ATTTTTTAAAGTGATATAGAAATTTTTACTTAA
1 ATTTTTTAAAATGATATAGAAATTTTTACTTAA
12186193 ATTTTTTAAAATGATATA
1 ATTTTTTAAAATGATATA
12186211 AAAAAATTTT
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
31 3 0.05
32 42 0.64
33 21 0.32
ACGTcount: A:0.39, C:0.03, G:0.10, T:0.49
Consensus pattern (33 bp):
ATTTTTTAAAATGATATAGAAATTTTTACTTAA
Found at i:12190365 original size:44 final size:44
Alignment explanation
Indices: 12190307--12190558 Score: 202
Period size: 44 Copynumber: 5.9 Consensus size: 44
12190297 AAATAAATAT
12190307 TCCTCTAAAT-AGAGGCTCAACGATTTTGGAAGAATAAATAAAGC
1 TCCTCT-AATCAGAGGCTCAACGATTTTGGAAGAATAAATAAAGC
* ** *
12190351 TCCTCTAATCAGAGGCTCAACGA-CTTAAAAG-A-AAATAAATTAC
1 TCCTCTAATCAGAGGCTCAACGATTTTGGAAGAATAAATAAA--GC
* * * * *
12190394 TTCTTTAAAT-AGAGGCTCAACGACTTT-GAAAAATAAACAAAGC
1 TCCTCT-AATCAGAGGCTCAACGATTTTGGAAGAATAAATAAAGC
* * * *
12190437 TCCTTTAAACAGAGGCTCAATGACTTTGGAAGAATAAATAAAGC
1 TCCTCTAATCAGAGGCTCAACGATTTTGGAAGAATAAATAAAGC
* *
12190481 TCCTCTAATCATAGGCTCAAC--TTTTGGAA-AATAAAT--TGC
1 TCCTCTAATCAGAGGCTCAACGATTTTGGAAGAATAAATAAAGC
* * * * * *
12190520 TCCTCTAAACAGAGGCACCACAATTTTTGAAAAATAAAT
1 TCCTCTAATCAGAGGCTCAACGATTTTGGAAGAATAAAT
12190559 GCTCATCTAA
Statistics
Matches: 169, Mismatches: 27, Indels: 26
0.76 0.12 0.12
Matches are distributed among these distances:
39 19 0.11
41 21 0.12
42 17 0.10
43 50 0.30
44 56 0.33
45 6 0.04
ACGTcount: A:0.41, C:0.18, G:0.14, T:0.26
Consensus pattern (44 bp):
TCCTCTAATCAGAGGCTCAACGATTTTGGAAGAATAAATAAAGC
Found at i:12190511 original size:86 final size:85
Alignment explanation
Indices: 12190255--12190575 Score: 273
Period size: 86 Copynumber: 3.8 Consensus size: 85
12190245 TTTTTTTTAG
* * * * *
12190255 TAAACAAAGCTCCTCTAAATAAAGGCTCAATAACTTTAAAAAAAATAAATATTCCTCTAAATAGA
1 TAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTAAGAAAAATAAATACTCCTCTAAATAGA
*
12190320 GGCTCAACGATTTTGGAAGAA
66 GGCTCAAC-ATTTTGGAAAAA
* * * * * *
12190341 TAAATAAAGCTCCTCTAATCAGAGGCTCAACGAC-TTAAAAGAAAATAAATTACTTCTTTAAATA
1 TAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTAAGA-AAAATAAA-TACTCCTCTAAATA
*
12190405 GAGGCTCAACGACTTT-GAAAAA
64 GAGGCTCAAC-ATTTTGGAAAAA
* *
12190427 TAAACAAAGCTCCTTTAAACAGAGGCTCAATGACTTTGGAAGAATAAATAAA-GCTCCTCT-AAT
1 TAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTT--AAGAA-AAATAAATACTCCTCTAAAT
*
12190490 CATAGGCTCAAC-TTTTGG-AAAA
63 -AGAGGCTCAACATTTTGGAAAAA
** * * * * ** * *
12190512 T-AA-ATTGCTCCTCTAAACAGAGGCACCA-CAATTTTTGAAAAATAAATGCTCATCTAAATAGA
1 TAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTAAGAAAAATAAATACTCCTCTAAATAGA
12190574 GG
66 GG
12190576 TAACCACGAC
Statistics
Matches: 193, Mismatches: 32, Indels: 26
0.77 0.13 0.10
Matches are distributed among these distances:
79 7 0.04
80 14 0.07
81 3 0.02
82 4 0.02
83 20 0.10
84 2 0.01
85 14 0.07
86 75 0.39
87 43 0.22
88 1 0.01
89 10 0.05
ACGTcount: A:0.43, C:0.18, G:0.13, T:0.26
Consensus pattern (85 bp):
TAAACAAAGCTCCTCTAAACAGAGGCTCAATGACTTTAAGAAAAATAAATACTCCTCTAAATAGA
GGCTCAACATTTTGGAAAAA
Found at i:12190590 original size:41 final size:41
Alignment explanation
Indices: 12190503--12190600 Score: 117
Period size: 41 Copynumber: 2.4 Consensus size: 41
12190493 AGGCTCAACT
* * * *
12190503 TTTGGAAAATAAATTGCTCCTCTAAACAGAGGCACCACAATT
1 TTTGAAAAATAAA-TGCTCATCTAAACAGAGGAACCACAATC
* *
12190545 TTTGAAAAATAAATGCTCATCTAAATAGAGGTAACCACGA-C
1 TTTGAAAAATAAATGCTCATCTAAACAGAGG-AACCACAATC
12190586 TTTGAAAAATAAATG
1 TTTGAAAAATAAATG
12190601 GCTCTTTGAC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
41 31 0.63
42 18 0.37
ACGTcount: A:0.43, C:0.16, G:0.14, T:0.27
Consensus pattern (41 bp):
TTTGAAAAATAAATGCTCATCTAAACAGAGGAACCACAATC
Found at i:12191117 original size:20 final size:20
Alignment explanation
Indices: 12191088--12191126 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
12191078 TCACATCAAA
*
12191088 AGTTCAAAGATTCTCATTCT
1 AGTTCAAAGATTCACATTCT
*
12191108 AGTTCGAAGATTCACATTC
1 AGTTCAAAGATTCACATTC
12191127 AACGAACTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
AGTTCAAAGATTCACATTCT
Found at i:12191222 original size:46 final size:46
Alignment explanation
Indices: 12191149--12191309 Score: 214
Period size: 46 Copynumber: 3.4 Consensus size: 46
12191139 GGTTTCACAC
*
12191149 CTCAAAGATTCTCATTTAAAAACATCTTAAAGATTCTTATTTAAGA
1 CTCAAAGATTCTCATTTAAAAATATCTTAAAGATTCTTATTTAAGA
* * *
12191195 GTCAAAGATTCTCATTTAAAAATATCTTAAAGGTTCTCATTTAAGA
1 CTCAAAGATTCTCATTTAAAAATATCTTAAAGATTCTTATTTAAGA
* * * *
12191241 CTCAAAGATTCTCATTTGAAAATGTCTTAAAGATTTTTATTTAAAAA
1 CTCAAAGATTCTCATTTAAAAATATCTTAAAGATTCTTATTT-AAGA
12191288 CATCTTAAAGATTCTCATTTAA
1 C-TC--AAAGATTCTCATTTAA
12191310 GACTCAAAGA
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
46 78 0.79
47 4 0.04
48 2 0.02
50 15 0.15
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.39
Consensus pattern (46 bp):
CTCAAAGATTCTCATTTAAAAATATCTTAAAGATTCTTATTTAAGA
Found at i:12191273 original size:71 final size:71
Alignment explanation
Indices: 12191198--12191355 Score: 253
Period size: 71 Copynumber: 2.2 Consensus size: 71
12191188 TTTAAGAGTC
* * * * *
12191198 AAAGATTCTCATTTAAAAATATCTTAAAGGTTCTCATTTAAGACTCAAAGATTCTCATTTGAAAA
1 AAAGATTTTCATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
12191263 TGTCTT
66 TGTCTT
*
12191269 AAAGATTTTTATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
1 AAAGATTTTCATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
*
12191334 TTTCTT
66 TGTCTT
12191340 AAAGATTTTCATTTAA
1 AAAGATTTTCATTTAA
12191356 GACTTAAAGA
Statistics
Matches: 79, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 79 1.00
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.39
Consensus pattern (71 bp):
AAAGATTTTCATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
TGTCTT
Found at i:12191358 original size:117 final size:116
Alignment explanation
Indices: 12191152--12191400 Score: 390
Period size: 117 Copynumber: 2.1 Consensus size: 116
12191142 TTCACACCTC
* * *
12191152 AAAGATTCTCATTTAAAAACATCTTAAAGATTCTTATTTAAGAGTCAAAGATTCTCATTTAAAAA
1 AAAGATTCTCATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
* *
12191217 TATCTTAAAGGTTCTCATTTAAGACTCAAAGATTCTCATTTGAAAATGTCTT
66 TATCTTAAAGATTCTCATTTAAGACTCAAAGATTCGCATTTG-AAATGTCTT
* *
12191269 AAAGATTTTTATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
1 AAAGATTCTCATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
* * *
12191334 TTTCTTAAAGATTTTCATTTAAGACTTAAAGATTCGCATTTGAAATGTCTT
66 TATCTTAAAGATTCTCATTTAAGACTCAAAGATTCGCATTTGAAATGTCTT
*
12191385 AAACATTCTCATTTAA
1 AAAGATTCTCATTTAA
12191401 GAAATCTAGA
Statistics
Matches: 119, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
116 22 0.18
117 97 0.82
ACGTcount: A:0.40, C:0.13, G:0.08, T:0.39
Consensus pattern (116 bp):
AAAGATTCTCATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTCATTTAAAAA
TATCTTAAAGATTCTCATTTAAGACTCAAAGATTCGCATTTGAAATGTCTT
Found at i:12191373 original size:21 final size:21
Alignment explanation
Indices: 12191174--12191402 Score: 134
Period size: 25 Copynumber: 10.0 Consensus size: 21
12191164 TTAAAAACAT
*
12191174 CTTAAAGATTCTTATTTAAGA
1 CTTAAAGATTCTCATTTAAGA
* * *
12191195 GTCAAAGATTCTCATTTAAAAATA
1 CTTAAAGATTCTCATTT---AAGA
*
12191219 TCTTAAAGGTTCTCATTTAAGA
1 -CTTAAAGATTCTCATTTAAGA
* *
12191241 CTCAAAGATTCTCATTTGAAAATGT
1 CTTAAAGATTCTCATTT---AA-GA
* * *
12191266 CTTAAAGATTTTTATTTAAAAACA
1 CTTAAAGATTCTCATTT---AAGA
12191290 TCTTAAAGATTCTCATTTAAGA
1 -CTTAAAGATTCTCATTTAAGA
* * *
12191312 CTCAAAGAATCTCATTTAAAAA
1 CTTAAAGATTCTCATTT-AAGA
*
12191334 TTTCTTAAAGATTTTCATTTAAGA
1 ---CTTAAAGATTCTCATTTAAGA
* *
12191358 CTTAAAGATTCGCATTTGAAATGT
1 CTTAAAGATTCTCATTT--AA-GA
*
12191382 CTTAAACATTCTCATTTAAGA
1 CTTAAAGATTCTCATTTAAGA
12191403 AATCTAGATT
Statistics
Matches: 159, Mismatches: 33, Indels: 32
0.71 0.15 0.14
Matches are distributed among these distances:
21 60 0.38
22 11 0.07
23 2 0.01
24 24 0.15
25 62 0.39
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (21 bp):
CTTAAAGATTCTCATTTAAGA
Found at i:12191400 original size:45 final size:46
Alignment explanation
Indices: 12191279--12191402 Score: 160
Period size: 46 Copynumber: 2.7 Consensus size: 46
12191269 AAAGATTTTT
** *
12191279 ATTTAAAAACATCTTAAAGATTCTCATTTAAGACTCAAAGAATCTC
1 ATTTAAAAATGTCTTAAAGATTCTCATTTAAGACTCAAAGAATCGC
* * * *
12191325 ATTTAAAAATTTCTTAAAGATTTTCATTTAAGACTTAAAGATTCGC
1 ATTTAAAAATGTCTTAAAGATTCTCATTTAAGACTCAAAGAATCGC
* *
12191371 ATTT-GAAATGTCTTAAACATTCTCATTTAAGA
1 ATTTAAAAATGTCTTAAAGATTCTCATTTAAGA
12191403 AATCTAGATT
Statistics
Matches: 68, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
45 24 0.35
46 44 0.65
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (46 bp):
ATTTAAAAATGTCTTAAAGATTCTCATTTAAGACTCAAAGAATCGC
Found at i:12192592 original size:13 final size:13
Alignment explanation
Indices: 12192574--12192598 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12192564 CGCTCTTTCA
12192574 AGTTTTCATTTTG
1 AGTTTTCATTTTG
12192587 AGTTTTCATTTT
1 AGTTTTCATTTT
12192599 CTTTCAGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.12, T:0.64
Consensus pattern (13 bp):
AGTTTTCATTTTG
Found at i:12192629 original size:13 final size:13
Alignment explanation
Indices: 12192611--12192703 Score: 58
Period size: 13 Copynumber: 7.5 Consensus size: 13
12192601 TTCAGTTCTA
12192611 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
*
12192624 TTTTTTTCTC--A
1 TTTTTTTCTCTTT
* * *
12192635 TCTTTTTC-ATTC
1 TTTTTTTCTCTTT
12192647 TTTTTTTCTC---
1 TTTTTTTCTCTTT
12192657 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
*
12192670 TTTTCTTTAT-TTT
1 TTTT-TTTCTCTTT
12192683 TTTTCTTTCT-TTAT
1 TTTT-TTTCTCTT-T
12192697 TTTTTTT
1 TTTTTTT
12192704 ATTTTCTCTT
Statistics
Matches: 64, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
10 10 0.16
11 7 0.11
12 7 0.11
13 31 0.48
14 9 0.14
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTTTCTCTTT
Found at i:12192658 original size:20 final size:20
Alignment explanation
Indices: 12192625--12192675 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
12192615 TTTCTCTTTT
12192625 TTTTTTCTCATCTTTTTCAT-TC
1 TTTTTT-TC-TCTTTTT-ATCTC
*
12192647 TTTTTTTCTCTTTTTTTCTC
1 TTTTTTTCTCTTTTTATCTC
12192667 TTTTTTTCT
1 TTTTTTTCT
12192676 TTATTTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 18 0.67
21 2 0.07
22 6 0.22
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTTTTCTCTTTTTATCTC
Found at i:12192686 original size:45 final size:45
Alignment explanation
Indices: 12192606--12192714 Score: 125
Period size: 46 Copynumber: 2.4 Consensus size: 45
12192596 TTTCTTTCAG
*
12192606 TTCTATTTTTTTCTCTTTTTTTTTTCTCATCTTTTTCATTCTTT-TT
1 TTCT-TTTTTTTCTCTTTTTTTTTTAT-ATCTTTTTCATTCTTTATT
* *
12192652 TTCTCTTTTTTTCTCTTTTTTTCTTTAT-TTTTTTTCTTTCTTTATT
1 TTCT-TTTTTTTCTCTTTTTTT-TTTATATCTTTTTCATTCTTTATT
12192698 TT-TTTTATTTTCTCTTT
1 TTCTTTT-TTTTCTCTTT
12192715 CACCCATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
44 3 0.05
45 24 0.43
46 25 0.45
47 4 0.07
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.79
Consensus pattern (45 bp):
TTCTTTTTTTTCTCTTTTTTTTTTATATCTTTTTCATTCTTTATT
Found at i:12192693 original size:17 final size:16
Alignment explanation
Indices: 12192647--12192703 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 16
12192637 TTTTTCATTC
* *
12192647 TTTTTTTCTCTTTTTT
1 TTTTTTTTTCTTTATT
12192663 TCTCTTTTTTTCTTTATT
1 T-T-TTTTTTTCTTTATT
12192681 TTTTTTCTTTCTTTATT
1 TTTTTT-TTTCTTTATT
12192698 TTTTTT
1 TTTTTT
12192704 ATTTTCTCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
16 5 0.14
17 18 0.50
18 13 0.36
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTTTTTCTTTATT
Found at i:12193078 original size:11 final size:11
Alignment explanation
Indices: 12193064--12193095 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
12193054 TCATTTTTTC
*
12193064 TTTCTTTTTGT
1 TTTCTTTTTAT
12193075 TTTCTTTTTAT
1 TTTCTTTTTAT
12193086 TTTCTTTTTA
1 TTTCTTTTTA
12193096 AGACATTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.06, C:0.09, G:0.03, T:0.81
Consensus pattern (11 bp):
TTTCTTTTTAT
Found at i:12196697 original size:10 final size:11
Alignment explanation
Indices: 12196651--12196694 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
12196641 AAAAATTTAC
12196651 AAAAAAGAAAT
1 AAAAAAGAAAT
12196662 AAAAAAGAAAT
1 AAAAAAGAAAT
*
12196673 AAAATAAAACAAT
1 AAAA-AAGA-AAT
12196686 AAAAAAGAA
1 AAAAAAGAA
12196695 TAATGATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.82, C:0.02, G:0.07, T:0.09
Consensus pattern (11 bp):
AAAAAAGAAAT
Found at i:12196824 original size:60 final size:57
Alignment explanation
Indices: 12196760--12196875 Score: 187
Period size: 60 Copynumber: 2.0 Consensus size: 57
12196750 GCTTTTGTAC
12196760 AAGGAAAATTGATACTTTCAACTTTTCCTTAAAATGTTTTTCTTGATAATTTTTATTTTT
1 AAGGAAAATTGATACTTTCAACTTTTCC-TAAAATG-TTTT-TTGATAATTTTTATTTTT
* *
12196820 AAGGAAAATTGGTACTTTCAACTTTTCCTCAAATGTTTTTTGATAATTTTTATTTT
1 AAGGAAAATTGATACTTTCAACTTTTCCTAAAATGTTTTTTGATAATTTTTATTTT
12196876 AGAAATTTTA
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
57 17 0.31
58 4 0.07
59 6 0.11
60 27 0.50
ACGTcount: A:0.29, C:0.10, G:0.09, T:0.51
Consensus pattern (57 bp):
AAGGAAAATTGATACTTTCAACTTTTCCTAAAATGTTTTTTGATAATTTTTATTTTT
Found at i:12196891 original size:70 final size:71
Alignment explanation
Indices: 12196817--12196949 Score: 205
Period size: 70 Copynumber: 1.9 Consensus size: 71
12196807 AATTTTTATT
* * * * *
12196817 TTTAAGGAAAATTGGTACTTTCAACTTTTCCTC-AAATGTTTTTTGATAATTTTTATTTTAGAAA
1 TTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTGAGAATTTTTATCTTAGAAA
12196881 TTTTAC
66 TTTTAC
12196887 TTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAGAATTTTTATCTTAG
1 TTTAAGAAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTGAGAATTTTTATCTTAG
12196950 GAAAAAAAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
70 31 0.55
72 25 0.45
ACGTcount: A:0.32, C:0.11, G:0.09, T:0.48
Consensus pattern (71 bp):
TTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTGAGAATTTTTATCTTAGAAA
TTTTAC
Done.