Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 64 of 133
Found at i:13031674 original size:21 final size:21
Alignment explanation
Indices: 13031650--13031691 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13031640 TCTTATGGGT
13031650 TATAAGCCCTAACTTTAGCTA
1 TATAAGCCCTAACTTTAGCTA
13031671 TATAAGCCCTAACTTTAGCTA
1 TATAAGCCCTAACTTTAGCTA
13031692 GGCAACCCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.24, G:0.10, T:0.33
Consensus pattern (21 bp):
TATAAGCCCTAACTTTAGCTA
Found at i:13033956 original size:50 final size:49
Alignment explanation
Indices: 13033897--13033998 Score: 150
Period size: 50 Copynumber: 2.1 Consensus size: 49
13033887 CCTATGGGCA
* * *
13033897 AATTAAGAAATACATAATATCTATTTCATCCAAATTAATCATAGAACTAT
1 AATTAAGAAACAAATAATATCTATTTCATCCAAATT-ATCATAAAACTAT
* *
13033947 AATTAAGAAACAAATAATTTCTATTTCATCCTAATTATCATAAAACTAT
1 AATTAAGAAACAAATAATATCTATTTCATCCAAATTATCATAAAACTAT
13033996 AAT
1 AAT
13033999 AATTTCCCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 15 0.32
50 32 0.68
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (49 bp):
AATTAAGAAACAAATAATATCTATTTCATCCAAATTATCATAAAACTAT
Found at i:13034535 original size:20 final size:20
Alignment explanation
Indices: 13034510--13034566 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
13034500 ATGTAATTAG
13034510 ATATTAATCATACAAATATA
1 ATATTAATCATACAAATATA
13034530 ATATTAATCA-AGCAAATAATA
1 ATATTAATCATA-CAAAT-ATA
*
13034551 A-A-TAATCATGCAAATA
1 ATATTAATCATACAAATA
13034567 AATTAAACTC
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 1 0.03
19 12 0.36
20 16 0.48
21 4 0.12
ACGTcount: A:0.56, C:0.11, G:0.04, T:0.30
Consensus pattern (20 bp):
ATATTAATCATACAAATATA
Found at i:13036097 original size:27 final size:26
Alignment explanation
Indices: 13036054--13036115 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
13036044 TTTGGACTTT
*
13036054 AACTGAAAATAATAAT-ATAAAAACTAA
1 AACT-AAAATAAAAATAATAAAAA-TAA
*
13036081 AACTAAAACTAAAAATAATAATAATAA
1 AACTAAAA-TAAAAATAATAAAAATAA
*
13036108 AAATAAAA
1 AACTAAAA
13036116 ATGAATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 4 0.13
27 20 0.67
28 6 0.20
ACGTcount: A:0.71, C:0.06, G:0.02, T:0.21
Consensus pattern (26 bp):
AACTAAAATAAAAATAATAAAAATAA
Found at i:13036612 original size:74 final size:73
Alignment explanation
Indices: 13036534--13036738 Score: 216
Period size: 74 Copynumber: 2.8 Consensus size: 73
13036524 CCATTAAGGT
* * *
13036534 TTCAATTTCGAAAAATAAAGTACTCATCATCGAGGCTACAACTTTTGAAAAATAAAAAACTTCTC
1 TTCAATTTCGAAAAATAAAGAACTCATCATCGAGGCTTCAAC-TTTGAAAAATAAAAAACTCCTC
*
13036599 TACCGATGC
65 TACCAATGC
* * * * * *
13036608 TTCAACTTGGAAAAATAAA-AACTCCTTCATTGAGGCTTTAACTTGGAAAAAT-AAAAACTCCTC
1 TTCAATTTCGAAAAATAAAGAACT-CATCATCGAGGCTTCAACTTTGAAAAATAAAAAACTCCTC
13036671 TACCAATGC
65 TACCAATGC
* * * * *
13036680 TTTAACTTTTGAAAAATAAAGAACTTATCCATCAAAGCTTCAACTTTGAAAAAATAAAA
1 TTCAA-TTTCGAAAAATAAAGAACTCAT-CATCGAGGCTTCAACTTTG-AAAAATAAAA
13036739 TCATGTTTGG
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
72 22 0.21
73 25 0.24
74 49 0.47
75 6 0.06
76 3 0.03
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.29
Consensus pattern (73 bp):
TTCAATTTCGAAAAATAAAGAACTCATCATCGAGGCTTCAACTTTGAAAAATAAAAAACTCCTCT
ACCAATGC
Found at i:13036621 original size:37 final size:38
Alignment explanation
Indices: 13036572--13036738 Score: 137
Period size: 36 Copynumber: 4.5 Consensus size: 38
13036562 ATCGAGGCTA
* * *
13036572 CAACTTTTGAAAAATAAAAAACTTCTCTACCGATGCTT
1 CAACTTTGGAAAAATAAAAAACTCCTCTACCAATGCTT
*** *
13036610 CAAC-TTGGAAAAAT-AAAAACTCCT-TCATTGAGGCTT
1 CAACTTTGGAAAAATAAAAAACTCCTCT-ACCAATGCTT
*
13036646 TAAC-TTGGAAAAAT-AAAAACTCCTCTACCAATGCTT
1 CAACTTTGGAAAAATAAAAAACTCCTCTACCAATGCTT
* * * ** * * *
13036682 TAACTTTTGAAAAATAAAGAACTTATCCATCAAAGCTT
1 CAACTTTGGAAAAATAAAAAACTCCTCTACCAATGCTT
*
13036720 CAACTTTGAAAAAATAAAA
1 CAACTTTGGAAAAATAAAA
13036739 TCATGTTTGG
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
35 1 0.01
36 49 0.47
37 19 0.18
38 35 0.34
ACGTcount: A:0.44, C:0.19, G:0.09, T:0.29
Consensus pattern (38 bp):
CAACTTTGGAAAAATAAAAAACTCCTCTACCAATGCTT
Found at i:13036682 original size:36 final size:36
Alignment explanation
Indices: 13036580--13036704 Score: 144
Period size: 36 Copynumber: 3.4 Consensus size: 36
13036570 TACAACTTTT
* *
13036580 GAAAAATAAAAAACTTCTCTACCGATGCTTCAACTTG
1 GAAAAAT-AAAAACTCCTCTACCGATGCTTTAACTTG
** *
13036617 GAAAAATAAAAACTCCT-TCATTGAGGCTTTAACTTG
1 GAAAAATAAAAACTCCTCT-ACCGATGCTTTAACTTG
* *
13036653 GAAAAATAAAAACTCCTCTACCAATGCTTTAACTTTT
1 GAAAAATAAAAACTCCTCTACCGATGCTTTAAC-TTG
13036690 GAAAAATAAAGAACT
1 GAAAAATAAA-AACT
13036705 TATCCATCAA
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
35 1 0.01
36 49 0.66
37 20 0.27
38 4 0.05
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.28
Consensus pattern (36 bp):
GAAAAATAAAAACTCCTCTACCGATGCTTTAACTTG
Found at i:13038415 original size:24 final size:24
Alignment explanation
Indices: 13038388--13038438 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
13038378 TTTTGTTATG
* *
13038388 TTTTTTTTTCACTTTTTCCTTTTT
1 TTTTTTTTTCACTTTTGCATTTTT
**
13038412 TTTTTTTTTTGCTTTTGCATTTTT
1 TTTTTTTTTCACTTTTGCATTTTT
13038436 TTT
1 TTT
13038439 CATATCTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.04, C:0.12, G:0.04, T:0.80
Consensus pattern (24 bp):
TTTTTTTTTCACTTTTGCATTTTT
Found at i:13038451 original size:44 final size:40
Alignment explanation
Indices: 13038360--13038440 Score: 110
Period size: 40 Copynumber: 2.0 Consensus size: 40
13038350 TTATGTCTTC
*
13038360 CTTTTTCC-TTTCTTTTTTTTTTGTTATGTTTTTTTTTCA
1 CTTTTTCCTTTTCTTTTTTTTTTGTTATGATTTTTTTTCA
* *
13038399 CTTTTTCCTTTTTTTTTTTTTTTGCTTTTGCATTTTTTTTCA
1 CTTTTTCCTTTTCTTTTTTTTTTG-TTATG-ATTTTTTTTCA
13038441 TATCTCTTCC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
39 8 0.22
40 14 0.39
41 4 0.11
42 10 0.28
ACGTcount: A:0.05, C:0.14, G:0.05, T:0.77
Consensus pattern (40 bp):
CTTTTTCCTTTTCTTTTTTTTTTGTTATGATTTTTTTTCA
Found at i:13038974 original size:34 final size:35
Alignment explanation
Indices: 13038902--13039063 Score: 136
Period size: 35 Copynumber: 4.6 Consensus size: 35
13038892 ACGAAGTCGT
* * * * *
13038902 AAGTTATAAAATAAAGATGACTAGGACAAAACCAC
1 AAGTTAGAGAATAAAGATGACTAGAACAAAATCGC
*
13038937 AAGTTA-AGGAATAAAG-TGAGT-GATACAAAATCGC
1 AAGTTAGA-GAATAAAGATGACTAGA-ACAAAATCGC
13038971 AAGTTAGAGAATAAAGATGACTAGAACAAAATCGC
1 AAGTTAGAGAATAAAGATGACTAGAACAAAATCGC
* ** * *
13039006 AAGTCAG-GAAATAAAGAAACAACTAGGACAAAATCAC
1 AAGTTAGAG-AATAAAG--ATGACTAGAACAAAATCGC
13039043 AAGTT-GAGGAATAAAGATGAC
1 AAGTTAGA-GAATAAAGATGAC
13039064 CAAGACAAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
33 1 0.01
34 28 0.27
35 44 0.43
36 3 0.03
37 26 0.25
38 1 0.01
ACGTcount: A:0.52, C:0.12, G:0.20, T:0.17
Consensus pattern (35 bp):
AAGTTAGAGAATAAAGATGACTAGAACAAAATCGC
Found at i:13039019 original size:69 final size:69
Alignment explanation
Indices: 13038860--13039021 Score: 173
Period size: 69 Copynumber: 2.3 Consensus size: 69
13038850 AATTGGGAAG
* * * * * * * *
13038860 AAACTACAAGTCAAGAAATAAAAATGATTGAGACGAAGTCGTAAGTTATAAAATAAAGATGACTA
1 AAACCACAAGTCAGGAAAT-AAAGTGAGTGAGACAAAATCGCAAGTTAGAAAATAAAGATGACTA
*
13038925 GGACA
65 GAACA
* * *
13038930 AAACCACAAGTTAAGG-AATAAAGTGAGTGATACAAAATCGCAAGTTAGAGAATAAAGATGACTA
1 AAACCACAAG-TCAGGAAATAAAGTGAGTGAGACAAAATCGCAAGTTAGAAAATAAAGATGACTA
13038994 GAACA
65 GAACA
* *
13038999 AAATCGCAAGTCAGGAAATAAAG
1 AAACCACAAGTCAGGAAATAAAG
13039022 AAACAACTAG
Statistics
Matches: 75, Mismatches: 15, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
68 4 0.05
69 56 0.75
70 12 0.16
71 3 0.04
ACGTcount: A:0.51, C:0.11, G:0.20, T:0.18
Consensus pattern (69 bp):
AAACCACAAGTCAGGAAATAAAGTGAGTGAGACAAAATCGCAAGTTAGAAAATAAAGATGACTAG
AACA
Found at i:13039040 original size:37 final size:36
Alignment explanation
Indices: 13038961--13039059 Score: 96
Period size: 37 Copynumber: 2.8 Consensus size: 36
13038951 AGTGAGTGAT
* **
13038961 ACAAAATCGCAAGTTA-GAGAATAAAG-ATGACTAGA
1 ACAAAATCGCAAGTCAGGA-AATAAAGAACAACTAGA
*
13038996 ACAAAATCGCAAGTCAGGAAATAAAGAAACAACTAGG
1 ACAAAATCGCAAGTCAGGAAATAAAG-AACAACTAGA
* *
13039033 ACAAAATCACAAGTTGAGG-AATAAAGA
1 ACAAAATCGCAAG-TCAGGAAATAAAGA
13039060 TGACCAAGAC
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
35 22 0.41
36 3 0.06
37 25 0.46
38 4 0.07
ACGTcount: A:0.54, C:0.13, G:0.19, T:0.14
Consensus pattern (36 bp):
ACAAAATCGCAAGTCAGGAAATAAAGAACAACTAGA
Found at i:13039139 original size:22 final size:22
Alignment explanation
Indices: 13039111--13039152 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
13039101 TCTAGTTTAT
*
13039111 GTGCCAGCTAATCTGGGCTTTC
1 GTGCCAGCTAAACTGGGCTTTC
13039133 GTGCCAGCTAAACTGGGCTT
1 GTGCCAGCTAAACTGGGCTT
13039153 AAGTTTCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.17, C:0.26, G:0.29, T:0.29
Consensus pattern (22 bp):
GTGCCAGCTAAACTGGGCTTTC
Found at i:13039177 original size:32 final size:30
Alignment explanation
Indices: 13039141--13039218 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 30
13039131 TCGTGCCAGC
*
13039141 TAAACTGGGCTTAAGTTTCCATGGAA-GCTAGG
1 TAAACTGGGCTTAAATTTCCAT--AATGCTA-G
* *
13039173 TAAACTAGGCTTAAATTTTCATAATGCTAG
1 TAAACTGGGCTTAAATTTCCATAATGCTAG
13039203 TAAAACTGGGCTTAAA
1 T-AAACTGGGCTTAAA
13039219 ACTTAATTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 4 0.10
31 17 0.43
32 19 0.47
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.31
Consensus pattern (30 bp):
TAAACTGGGCTTAAATTTCCATAATGCTAG
Found at i:13039775 original size:3 final size:3
Alignment explanation
Indices: 13039761--13039862 Score: 107
Period size: 3 Copynumber: 33.3 Consensus size: 3
13039751 TTTTTGTGTG
* * * *
13039761 TAT TAC TAT TAT TAT TAG TAC TAT TAC TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
13039809 TGT TAT TAT TAT TAT TAT TTT TGGT TAT TAGT T-T TAT TATT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TA-T TAT TAT TA-T TAT TAT
13039856 TAT TAT T
1 TAT TAT T
13039863 GTTGATATTC
Statistics
Matches: 83, Mismatches: 12, Indels: 8
0.81 0.12 0.08
Matches are distributed among these distances:
2 2 0.02
3 74 0.89
4 7 0.08
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:13039936 original size:12 final size:12
Alignment explanation
Indices: 13039919--13039953 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
13039909 TTATATTATA
13039919 TTATTTTTCTTT
1 TTATTTTTCTTT
*
13039931 TTATTTTT-TTA
1 TTATTTTTCTTT
13039942 TTATTTTTCTTT
1 TTATTTTTCTTT
13039954 CCTTTCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (12 bp):
TTATTTTTCTTT
Found at i:13039945 original size:11 final size:12
Alignment explanation
Indices: 13039917--13039952 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
13039907 TATTATATTA
13039917 TATTATTTTTCT
1 TATTATTTTTCT
*
13039929 TTTTATTTTT-T
1 TATTATTTTTCT
13039940 TATTATTTTTCT
1 TATTATTTTTCT
13039952 T
1 T
13039953 TCCTTTCCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.81
Consensus pattern (12 bp):
TATTATTTTTCT
Found at i:13040791 original size:10 final size:12
Alignment explanation
Indices: 13040772--13040803 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
13040762 ATTTTAAGTT
13040772 TTTATTTTAT-A
1 TTTATTTTATCA
13040783 TTT-TTTTATCA
1 TTTATTTTATCA
13040794 TTTATTTTAT
1 TTTATTTTAT
13040804 TTTACTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 6 0.32
11 7 0.37
12 6 0.32
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (12 bp):
TTTATTTTATCA
Found at i:13040801 original size:27 final size:28
Alignment explanation
Indices: 13040771--13040832 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
13040761 TATTTTAAGT
*
13040771 TTTTATTTTA-TATTTTTTTATCATTTA
1 TTTTATTTTACTAATTTTTTATCATTTA
*
13040798 TTTTATTTTACTAATTTTTTATTATTTA
1 TTTTATTTTACTAATTTTTTATCATTTA
13040826 TTTTATT
1 TTTTATT
13040833 GAGTAATTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 10 0.31
28 22 0.69
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTTATTTTACTAATTTTTTATCATTTA
Found at i:13040831 original size:12 final size:12
Alignment explanation
Indices: 13040772--13040851 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 12
13040762 ATTTTAAGTT
13040772 TTTATTTTA-TA
1 TTTATTTTATTA
*
13040783 TTT-TTTTATCA
1 TTTATTTTATTA
13040794 TTTATTTTATT-
1 TTTATTTTATTA
13040805 TTACTAATTTTTTATTA
1 TT--T-A--TTTTATTA
13040822 TTTATTTTATTGA
1 TTTATTTTATT-A
* *
13040835 -GTAATTTATTA
1 TTTATTTTATTA
13040846 TTTATT
1 TTTATT
13040852 AAATATTTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 19
0.68 0.08 0.24
Matches are distributed among these distances:
10 5 0.09
11 10 0.19
12 24 0.45
13 2 0.04
14 2 0.04
15 1 0.02
16 7 0.13
17 2 0.04
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (12 bp):
TTTATTTTATTA
Found at i:13040839 original size:27 final size:28
Alignment explanation
Indices: 13040771--13040847 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 28
13040761 TATTTTAAGT
* * *
13040771 TTTTATTTTA-TATTTTTTTATCATTTA
1 TTTTATTTGACTAATTTTTTATTATTTA
*
13040798 TTTTATTTTACTAATTTTTTATTATTTA
1 TTTTATTTGACTAATTTTTTATTATTTA
* *
13040826 TTTTA-TTGAGTAATTTATTATT
1 TTTTATTTGACTAATTTTTTATT
13040848 TATTAAATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 24 0.55
28 20 0.45
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (28 bp):
TTTTATTTGACTAATTTTTTATTATTTA
Found at i:13041205 original size:37 final size:37
Alignment explanation
Indices: 13041164--13041261 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 37
13041154 ATTTTATAAT
*
13041164 TAAATCTAACCAAACTATT-GGGAAATCTACATTAGAG
1 TAAATCT-ACCAAACTATTAGGGAAATCTACATTAAAG
**
13041201 TAAATCCTACCAAACTATTAGAGGGGGATCTACATTAAAG
1 TAAAT-CTACCAAACTATT--AGGGAAATCTACATTAAAG
13041241 TAAATCTTACCAAACTATTAG
1 TAAATC-TACCAAACTATTAG
13041262 AGGATTTTAC
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
37 16 0.30
38 4 0.08
39 1 0.02
40 32 0.60
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (37 bp):
TAAATCTACCAAACTATTAGGGAAATCTACATTAAAG
Found at i:13041243 original size:40 final size:40
Alignment explanation
Indices: 13041188--13041264 Score: 136
Period size: 40 Copynumber: 1.9 Consensus size: 40
13041178 CTATTGGGAA
*
13041188 ATCTACATTAGAGTAAATCCTACCAAACTATTAGAGGGGG
1 ATCTACATTAAAGTAAATCCTACCAAACTATTAGAGGGGG
*
13041228 ATCTACATTAAAGTAAATCTTACCAAACTATTAGAGG
1 ATCTACATTAAAGTAAATCCTACCAAACTATTAGAGG
13041265 ATTTTACTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.40, C:0.17, G:0.16, T:0.27
Consensus pattern (40 bp):
ATCTACATTAAAGTAAATCCTACCAAACTATTAGAGGGGG
Found at i:13052298 original size:60 final size:59
Alignment explanation
Indices: 13052225--13052381 Score: 167
Period size: 59 Copynumber: 2.7 Consensus size: 59
13052215 TTTTCATCAT
* * * *
13052225 TTGTTTCGATCTTGGCTTGGTCTAGATTATCTTTCTGACTCATA-GTTCAATCCCAGTCAC
1 TTGTTTTGATCTTGACTTAGTCTAGATCATCTTTCTGACT--TACGTTCAATCCCAGTCAC
* * *
13052285 TTGTTTTGATCTTGATTTAGTCTAGATCATCTTTTTGACTTACGTTCAATCTCAGTCAC
1 TTGTTTTGATCTTGACTTAGTCTAGATCATCTTTCTGACTTACGTTCAATCCCAGTCAC
* * * *
13052344 TTGTCTTGATCTCG-GTTATGTCCAGATCATCTTT-TGAC
1 TTGTTTTGATCTTGACTTA-GTCTAGATCATCTTTCTGAC
13052382 CATGGTTCAA
Statistics
Matches: 84, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
58 9 0.11
59 41 0.49
60 34 0.40
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.45
Consensus pattern (59 bp):
TTGTTTTGATCTTGACTTAGTCTAGATCATCTTTCTGACTTACGTTCAATCCCAGTCAC
Found at i:13052786 original size:3 final size:3
Alignment explanation
Indices: 13052778--13052914 Score: 132
Period size: 3 Copynumber: 45.3 Consensus size: 3
13052768 TGTGTATTGC
* * * *
13052778 TAT TAT TAT TAT TAT TTT TGGT TAT TAG TAT TAT TAT TAT TAG TATT
1 TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA-T
* * * * * * * *
13052825 TAT TAT TAT TAT TGT TAT TGT TGT TGT TAA TAT TAC TAG TAC TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
13052872 TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13052915 TTGTTTTTAT
Statistics
Matches: 113, Mismatches: 18, Indels: 6
0.82 0.13 0.04
Matches are distributed among these distances:
2 2 0.02
3 107 0.95
4 4 0.04
ACGTcount: A:0.28, C:0.01, G:0.07, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:13053730 original size:20 final size:20
Alignment explanation
Indices: 13053707--13053764 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
13053697 CATGTTTTCC
*
13053707 TTTTTCCATTTTATTTTT-AT
1 TTTTT-CATTTTATTTTTAAG
13053727 TTTTATCATTTTATATTTTAAG
1 TTTT-TCATTTTAT-TTTTAAG
13053749 TTTTT-ATTTTATTTTT
1 TTTTTCATTTTATTTTT
13053765 TGTTTTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
19 4 0.12
20 19 0.56
21 6 0.18
22 5 0.15
ACGTcount: A:0.19, C:0.05, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTTCATTTTATTTTTAAG
Found at i:13053740 original size:8 final size:7
Alignment explanation
Indices: 13053714--13053779 Score: 50
Period size: 7 Copynumber: 9.6 Consensus size: 7
13053704 TCCTTTTTCC
13053714 ATTTTAT
1 ATTTTAT
13053721 -TTTTAT
1 ATTTTAT
13053727 -TTTTAT
1 ATTTTAT
13053733 CATTTTAT
1 -ATTTTAT
13053741 ATTTTA-
1 ATTTTAT
13053747 AGTTTT-T
1 A-TTTTAT
13053754 ATTTTAT
1 ATTTTAT
* *
13053761 TTTTTGT
1 ATTTTAT
*
13053768 TTTTTAT
1 ATTTTAT
13053775 CATTT
1 -ATTT
13053780 ATTTTATTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
6 17 0.35
7 23 0.47
8 9 0.18
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (7 bp):
ATTTTAT
Found at i:13053784 original size:20 final size:19
Alignment explanation
Indices: 13053716--13053784 Score: 61
Period size: 20 Copynumber: 3.4 Consensus size: 19
13053706 CTTTTTCCAT
*
13053716 TTTATTTTTATTTTTATCA
1 TTTATTTTTGTTTTTATCA
13053735 TTTTATATTTTAAGTTTTTAT--
1 -TTTAT-TTTT--GTTTTTATCA
13053756 TTTATTTTTTGTTTTTTATCA
1 TTTA-TTTTTG-TTTTTATCA
13053777 TTTATTTT
1 TTTATTTT
13053785 ATTTTACTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 14
0.73 0.02 0.25
Matches are distributed among these distances:
18 1 0.02
19 7 0.17
20 17 0.41
21 9 0.22
23 7 0.17
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.75
Consensus pattern (19 bp):
TTTATTTTTGTTTTTATCA
Found at i:13053805 original size:19 final size:18
Alignment explanation
Indices: 13053759--13053807 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
13053749 TTTTTATTTT
*
13053759 ATTTTTTGTT-TTTTATC
1 ATTTTTTGTTATTTTATA
*
13053776 ATTTATT-TTATTTTACTA
1 ATTTTTTGTTATTTTA-TA
13053794 ATTTTTTGTTATTT
1 ATTTTTTGTTATTT
13053808 ATTTTATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 11 0.42
18 7 0.27
19 6 0.23
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.73
Consensus pattern (18 bp):
ATTTTTTGTTATTTTATA
Found at i:13053807 original size:28 final size:26
Alignment explanation
Indices: 13053751--13053815 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 26
13053741 ATTTTAAGTT
**
13053751 TTTATTTTATTTTTTGTTTTTTATCA
1 TTTATTTTATTTTTAATTTTTTATCA
* *
13053777 TTTATTTTATTTTACTAATTTTTTGTTA
1 TTTATTTTATTTT--TAATTTTTTATCA
13053805 TTTATTTTATT
1 TTTATTTTATT
13053816 GAGTAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 13 0.39
28 20 0.61
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.75
Consensus pattern (26 bp):
TTTATTTTATTTTTAATTTTTTATCA
Found at i:13053811 original size:14 final size:14
Alignment explanation
Indices: 13053750--13053815 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
13053740 TATTTTAAGT
*
13053750 TTTTATTTTATTTT
1 TTTTATTTTATTTA
*
13053764 TTGTTTTTTATCATTTA
1 TT-TTATTT-T-ATTTA
* *
13053781 TTTTATTTTACTAA
1 TTTTATTTTATTTA
13053795 TTTT-TTGTTATTTA
1 TTTTATT-TTATTTA
13053809 TTTTATT
1 TTTTATT
13053816 GAGTAATTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 9
0.71 0.12 0.16
Matches are distributed among these distances:
13 2 0.05
14 18 0.45
15 8 0.20
16 6 0.15
17 6 0.15
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:13053822 original size:27 final size:28
Alignment explanation
Indices: 13053767--13053829 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 28
13053757 TTATTTTTTG
*
13053767 TTTTTTATCATTTATTTTATTTTACTAA
1 TTTTTTATCATTTATTTTATTTGACTAA
* * *
13053795 TTTTTTGTTATTTATTTTA-TTGAGTAA
1 TTTTTTATCATTTATTTTATTTGACTAA
*
13053822 TTTATTAT
1 TTTTTTAT
13053830 TTATTAAATA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
27 12 0.41
28 17 0.59
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (28 bp):
TTTTTTATCATTTATTTTATTTGACTAA
Found at i:13055287 original size:25 final size:25
Alignment explanation
Indices: 13055220--13055288 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
13055210 TTTCATTCAT
* * *
13055220 TTTTTTCTTCACTTTTCCTTTTTCC
1 TTTTCTCTTCACCTTTCTTTTTTCC
13055245 TTTTCTCTTCACCTTTCTTTTTTCC
1 TTTTCTCTTCACCTTTCTTTTTTCC
*
13055270 TTTTCTCTTCACCATTCTT
1 TTTTCTCTTCACCTTTCTT
13055289 GTTCATTCTT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.06, C:0.30, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTCTCTTCACCTTTCTTTTTTCC
Found at i:13059813 original size:16 final size:16
Alignment explanation
Indices: 13059788--13059819 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13059778 TTAAAAGAAC
13059788 TTTTTGTTTTGTTTTT
1 TTTTTGTTTTGTTTTT
*
13059804 TTTTTTTTTTGTTTTT
1 TTTTTGTTTTGTTTTT
13059820 GCTGATGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91
Consensus pattern (16 bp):
TTTTTGTTTTGTTTTT
Found at i:13060692 original size:35 final size:35
Alignment explanation
Indices: 13060630--13060700 Score: 88
Period size: 35 Copynumber: 2.0 Consensus size: 35
13060620 GCCACCAATC
* *
13060630 TATTTTAAGGTGTGATTGGTAACCTAAAAATTTTA
1 TATTTTAAGGTGTGATTAGCAACCTAAAAATTTTA
* * * *
13060665 TATTTTAGGGTGTGATTAGCCATCTAAATATTTTA
1 TATTTTAAGGTGTGATTAGCAACCTAAAAATTTTA
13060700 T
1 T
13060701 CCTTTTAATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.45
Consensus pattern (35 bp):
TATTTTAAGGTGTGATTAGCAACCTAAAAATTTTA
Found at i:13061702 original size:14 final size:13
Alignment explanation
Indices: 13061683--13061758 Score: 82
Period size: 14 Copynumber: 5.6 Consensus size: 13
13061673 GGGTTTCACC
13061683 TAGGGTTTAGATTT
1 TAGGGTTTA-ATTT
13061697 TAGGGTTTAATTT
1 TAGGGTTTAATTT
*
13061710 TAGGGTTTTAAGTT
1 TAGGG-TTTAATTT
*
13061724 TAGGGTTTTAATCT
1 TAGGG-TTTAATTT
*
13061738 TAGGGTTTCGA-TT
1 TAGGGTTT-AATTT
13061751 TAGGGTTT
1 TAGGGTTT
13061759 TAAGATTGAC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
13 21 0.38
14 34 0.62
ACGTcount: A:0.20, C:0.03, G:0.28, T:0.50
Consensus pattern (13 bp):
TAGGGTTTAATTT
Found at i:13061729 original size:41 final size:41
Alignment explanation
Indices: 13061683--13061762 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
13061673 GGGTTTCACC
*
13061683 TAGGG-TTTAGATTTTAGGGTTT-AATTTTAGGGTTTTAAGTT
1 TAGGGTTTTA-ATCTTAGGGTTTCAA-TTTAGGGTTTTAAGTT
*
13061724 TAGGGTTTTAATCTTAGGGTTTCGATTTAGGGTTTTAAG
1 TAGGGTTTTAATCTTAGGGTTTCAATTTAGGGTTTTAAG
13061763 ATTGACGTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
41 30 0.86
42 5 0.14
ACGTcount: A:0.21, C:0.03, G:0.28, T:0.49
Consensus pattern (41 bp):
TAGGGTTTTAATCTTAGGGTTTCAATTTAGGGTTTTAAGTT
Found at i:13061760 original size:27 final size:26
Alignment explanation
Indices: 13061683--13061801 Score: 100
Period size: 27 Copynumber: 4.5 Consensus size: 26
13061673 GGGTTTCACC
*
13061683 TAGGGTTTAGATTTTAGGG-TTTAATTT
1 TAGGGTTTCGA-TTTAGGGTTTTAA-TT
**
13061710 TAGGGTTTTAAGTTTAGGGTTTTAATCT
1 TAGGGTTTCGA-TTTAGGGTTTTAAT-T
*
13061738 TAGGGTTTCGATTTAGGGTTTTAAGAT
1 TAGGGTTTCGATTTAGGGTTTTAA-TT
*
13061765 T-GACGTTTC-ATTTAGGGTTTTAATT
1 TAG-GGTTTCGATTTAGGGTTTTAATT
* *
13061790 TAAGGTGTCGAT
1 TAGGGTTTCGAT
13061802 AGGTTTTAAC
Statistics
Matches: 75, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
25 6 0.08
26 17 0.23
27 37 0.49
28 15 0.20
ACGTcount: A:0.22, C:0.04, G:0.26, T:0.48
Consensus pattern (26 bp):
TAGGGTTTCGATTTAGGGTTTTAATT
Found at i:13061889 original size:14 final size:13
Alignment explanation
Indices: 13061860--13061907 Score: 60
Period size: 13 Copynumber: 3.6 Consensus size: 13
13061850 AGTTTTCATA
**
13061860 TAGGGTTTTGTTT
1 TAGGGTTTAATTT
13061873 TAGGGTTTACATTT
1 TAGGGTTTA-ATTT
13061887 TAGGGTTTAATTT
1 TAGGGTTTAATTT
*
13061900 TAGAGTTT
1 TAGGGTTT
13061908 TGGGTTTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
13 19 0.61
14 12 0.39
ACGTcount: A:0.19, C:0.02, G:0.25, T:0.54
Consensus pattern (13 bp):
TAGGGTTTAATTT
Found at i:13062026 original size:14 final size:14
Alignment explanation
Indices: 13062007--13062039 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
13061997 TTATTATTGT
13062007 TTATTA-ATCTTTTA
1 TTATTATAT-TTTTA
13062021 TTATTATATTTTTA
1 TTATTATATTTTTA
13062035 TTATT
1 TTATT
13062040 TAATAATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 16 0.89
15 2 0.11
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTATATTTTTA
Found at i:13064647 original size:8 final size:8
Alignment explanation
Indices: 13064634--13064658 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
13064624 CAAAGATTTT
13064634 TTTTCTTG
1 TTTTCTTG
13064642 TTTTCTTG
1 TTTTCTTG
13064650 TTTTCTTG
1 TTTTCTTG
13064658 T
1 T
13064659 CTGCAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.12, T:0.76
Consensus pattern (8 bp):
TTTTCTTG
Found at i:13078488 original size:11 final size:10
Alignment explanation
Indices: 13078463--13078510 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
13078453 TTTCTCTTCC
13078463 ATTTTTTATT
1 ATTTTTTATT
*
13078473 CTTTTTTATTT
1 ATTTTTTA-TT
* *
13078484 ATTTTTTCTC
1 ATTTTTTATT
13078494 ATTTTTTAATT
1 ATTTTTT-ATT
13078505 ATTTTT
1 ATTTTT
13078511 CTAATTGTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
10 15 0.50
11 15 0.50
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (10 bp):
ATTTTTTATT
Found at i:13078645 original size:24 final size:24
Alignment explanation
Indices: 13078618--13078674 Score: 105
Period size: 24 Copynumber: 2.3 Consensus size: 24
13078608 TTATTCTAAC
13078618 AAATTTAAACATTTTAACATGCAT
1 AAATTTAAACATTTTAACATGCAT
13078642 AAATTTAAACATTTTAACATGCAT
1 AAATTTAAACATTTTAACATGCAT
13078666 AAATATTAA
1 AAAT-TTAA
13078675 TAATAAAATT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 28 0.88
25 4 0.12
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATTTAAACATTTTAACATGCAT
Found at i:13078700 original size:21 final size:21
Alignment explanation
Indices: 13078667--13078706 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
13078657 AACATGCATA
* *
13078667 AATATTAATAATAAAATTTAG
1 AATAATAAAAATAAAATTTAG
*
13078688 AATAATAAAAATAACATTT
1 AATAATAAAAATAAAATTT
13078707 TAAAAAAATT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (21 bp):
AATAATAAAAATAAAATTTAG
Found at i:13079994 original size:47 final size:47
Alignment explanation
Indices: 13079885--13080113 Score: 237
Period size: 47 Copynumber: 4.8 Consensus size: 47
13079875 TGAAAATTTA
* * ** *
13079885 AAAAGGCTCTTCTAAGCAGAGGCTCAATGACTTTAAAATTTTCATCTT-G
1 AAAA-GCTCCTCTAAGCAGAGGCTCTACAACTTT-AAA-CTTCATCTTGG
* *
13079934 AAAAACTTTCTCTAAGCAGAGGCTCTACAACTTTAAACTTCATCTTGG
1 AAAAGC-TCCTCTAAGCAGAGGCTCTACAACTTTAAACTTCATCTTGG
* * * * *
13079982 AAAAGCTCCTCTAAACAGAAGCTCAACAACTTTAAAAATTTCATCTTGA
1 AAAAGCTCCTCTAAGCAGAGGCTCTACAACTTT--AAACTTCATCTTGG
* * *
13080031 AAAAGCTCCTCTAAACAGAGGCTCTACAATTTTAAACTTCATTTTGG
1 AAAAGCTCCTCTAAGCAGAGGCTCTACAACTTTAAACTTCATCTTGG
*
13080078 AAAAGCTCCTCTAAGCAAAGGCT-TAACAACTTTAAA
1 AAAAGCTCCTCTAAGCAGAGGCTCT-ACAACTTTAAA
13080114 ACTTTTATCT
Statistics
Matches: 152, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
46 1 0.01
47 73 0.48
48 10 0.07
49 68 0.45
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.29
Consensus pattern (47 bp):
AAAAGCTCCTCTAAGCAGAGGCTCTACAACTTTAAACTTCATCTTGG
Found at i:13080024 original size:96 final size:96
Alignment explanation
Indices: 13079885--13080124 Score: 322
Period size: 96 Copynumber: 2.5 Consensus size: 96
13079875 TGAAAATTTA
* * ** * *
13079885 AAAAGGCTCTTCTAAGCAGAGGCTCAATGACTTTAAAATTTTCATCTTGAAAAA-CTTTCTCTAA
1 AAAA-GCTCCTCTAAGCAGAAGCTCAACAACTTTAAAAATTTCATCTTGAAAAAGC-TCCTCTAA
*
13079949 GCAGAGGCTCTACAACTTTAAACTTCATCTTGG
64 ACAGAGGCTCTACAACTTTAAACTTCATCTTGG
*
13079982 AAAAGCTCCTCTAAACAGAAGCTCAACAACTTTAAAAATTTCATCTTGAAAAAGCTCCTCTAAAC
1 AAAAGCTCCTCTAAGCAGAAGCTCAACAACTTTAAAAATTTCATCTTGAAAAAGCTCCTCTAAAC
* *
13080047 AGAGGCTCTACAATTTTAAACTTCATTTTGG
66 AGAGGCTCTACAACTTTAAACTTCATCTTGG
* * *
13080078 AAAAGCTCCTCTAAGCA-AAGGCTTAACAACTTTAAAACTTTTATCTT
1 AAAAGCTCCTCTAAGCAGAA-GCTCAACAACTTTAAAAATTTCATCTT
13080125 TTCTTGAAAC
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
95 2 0.02
96 120 0.94
97 5 0.04
ACGTcount: A:0.36, C:0.21, G:0.12, T:0.31
Consensus pattern (96 bp):
AAAAGCTCCTCTAAGCAGAAGCTCAACAACTTTAAAAATTTCATCTTGAAAAAGCTCCTCTAAAC
AGAGGCTCTACAACTTTAAACTTCATCTTGG
Found at i:13093077 original size:73 final size:71
Alignment explanation
Indices: 13092947--13093087 Score: 210
Period size: 73 Copynumber: 2.0 Consensus size: 71
13092937 GATAGGATAT
* * *
13092947 GAAATAAAAATAAAAGATAAAAATAATATGATTTTAAATTTTGATAAATTATGTATGAATTTGAA
1 GAAACAAAAATAAAAGATAAAAATAATATGATTTAAAATTTTGATAAATCATGTATGAA-TT-AA
13093012 AAAAACTA
64 AAAAACTA
* * *
13093020 GAAACAAAAATAAAATATAAAAATGATATGATTTAAAATTTTGATAAATCATTTATGAATTAAAA
1 GAAACAAAAATAAAAGATAAAAATAATATGATTTAAAATTTTGATAAATCATGTATGAATTAAAA
13093085 AAA
66 AAA
13093088 TTAAAATATG
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
71 7 0.11
72 2 0.03
73 53 0.85
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (71 bp):
GAAACAAAAATAAAAGATAAAAATAATATGATTTAAAATTTTGATAAATCATGTATGAATTAAAA
AAACTA
Found at i:13097147 original size:63 final size:63
Alignment explanation
Indices: 13097080--13097260 Score: 249
Period size: 63 Copynumber: 2.9 Consensus size: 63
13097070 TGGCATGAAG
* *
13097080 AAATGCCTTAAATAATTC-TTTTATATTTTTATAAATGGATTATTTAAGGCGTTTCTATAT-AGA
1 AAATGCCTTAAATAA-TCATTTTATATTTTTATAAATGAATTATTTAAGGCATTTCTATATCA-A
* *
13097143 AAATGCCTTAAATAATCTTTTTATATTTTTATAAATGAATTATTTAAGACATTTCTATATCAA
1 AAATGCCTTAAATAATCATTTTATATTTTTATAAATGAATTATTTAAGGCATTTCTATATCAA
* * * * *
13097206 AAATACCTTAAATAATCATTTTATATTTTTATAAAAGTATTATTGAAGGTATTTC
1 AAATGCCTTAAATAATCATTTTATATTTTTATAAATGAATTATTTAAGGCATTTC
13097261 GGTACAACAT
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
62 2 0.02
63 103 0.97
64 1 0.01
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.46
Consensus pattern (63 bp):
AAATGCCTTAAATAATCATTTTATATTTTTATAAATGAATTATTTAAGGCATTTCTATATCAA
Found at i:13099929 original size:24 final size:23
Alignment explanation
Indices: 13099873--13099933 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 23
13099863 AAATCCTTCT
*
13099873 TTTTTCTTTTCTTTTACTTAGCTT
1 TTTTT-TTTTCTTTTACTTAGCTC
* *
13099897 TTTTCTTTTTCTTTTATTTTTGCTC
1 TTTT-TTTTTCTTTTA-CTTAGCTC
13099922 TTTTTTTTTCTT
1 TTTTTTTTTCTT
13099934 ACCCAAAGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
24 22 0.69
25 10 0.31
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (23 bp):
TTTTTTTTTCTTTTACTTAGCTC
Found at i:13100689 original size:145 final size:145
Alignment explanation
Indices: 13100287--13100702 Score: 471
Period size: 145 Copynumber: 2.9 Consensus size: 145
13100277 TTATTTTTTG
* * * * *
13100287 GATTTTAAA-ACACCAAAAATCATAAAATATTGTAAAATTGA-TATTTGGAAAGTTTCATGAAAA
1 GATTTTAAATACACCAAAAATCATGAAATATTATGAAATTAAGT-TTTGAAAAGTTTCATGAAAA
* * * *
13100350 TCTGAGGCT-GAAAAAGTCAAATTACAAAAATACCCCTGTATGGGGTATTTTGGTAATTTCACAC
65 TC-CAAGCTCGAAAAAGTCAAATTACAAAAATACCCTTATAT-GGGTATTTTGGTAATTTCACAC
***
13100414 TTCCCAGGGTATTGCTAT
128 TTCCCAGGGTACAACTAT
* * * *
13100432 GATTTCAAATGCACCAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAAT
1 GATTTTAAATACACCAAAAATCATGAAATATTATGAAATTAAGTTTTGAAAAGTTTCATGAAAAT
** * * * * * *
13100497 CTGAGCTCAAAAAAGTCAAAATA-TAAAATATCCTTATAAAGGGTATTTTGATAATTTCACACTT
66 CCAAGCTCGAAAAAGTCAAATTACAAAAATACCCTTAT-ATGGGTATTTTGGTAATTTCACACTT
* *
13100561 CTCGGGGTACAACTAT
130 CCCAGGGTACAACTAT
* *
13100577 GATTTTAAATACATCAAAAATCATGAAATATTATGAAATTAAGTTTTGAAAAATTTCATGAAAAT
1 GATTTTAAATACACCAAAAATCATGAAATATTATGAAATTAAGTTTTGAAAAGTTTCATGAAAAT
* ** * *
13100642 CCAAACTCGTGAAAGCCAAATTACAAAAATACCCTTATATGGTTATTTTGGTAATTTCACA
66 CCAAGCTCGAAAAAGTCAAATTACAAAAATACCCTTATATGGGTATTTTGGTAATTTCACA
13100703 ATTTCCTTGG
Statistics
Matches: 222, Mismatches: 44, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
145 149 0.67
146 73 0.33
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (145 bp):
GATTTTAAATACACCAAAAATCATGAAATATTATGAAATTAAGTTTTGAAAAGTTTCATGAAAAT
CCAAGCTCGAAAAAGTCAAATTACAAAAATACCCTTATATGGGTATTTTGGTAATTTCACACTTC
CCAGGGTACAACTAT
Found at i:13101377 original size:73 final size:73
Alignment explanation
Indices: 13101228--13101491 Score: 185
Period size: 73 Copynumber: 3.6 Consensus size: 73
13101218 GGGCGATTGG
* * * * * * * * **
13101228 GACAACACTATAAGTCAAAAAAT--AAAGAACAACTAGGATAATACTGTAAGTTGAAAAATAAAG
1 GACAAAACCATAAGTCAAAAAATGAAAAAAATAACCAGGACAACACTGCAAGTCAAAAAATAAA-
**
13101291 AATGATCGA
65 AAAAATCGA
* * * * **
13101300 GACAATACCATAAGTTAAAAAAT-AACAAAAATGATCAGGATGACACTGCAAGTCAAAAAATAAA
1 GACAAAACCATAAGTCAAAAAATGAA-AAAAATAACCAGGACAACACTGCAAGTCAAAAAATAAA
*
13101364 AAAAATCGG
65 AAAAATCGA
* * * *
13101373 GACAAAACCATATGTCAAAAAATGAAGAAAATAACCAGGACAACACTGTAAGTCAAAAAATAAAG
1 GACAAAACCATAAGTCAAAAAATGAAAAAAATAACCAGGACAACACTGCAAGTCAAAAAATAAAA
*
13101438 AAAA-CTA
66 AAAATCGA
* * * * * * * *
13101445 GGACGACACCACAAATCAGAAAATGAAGAAAATGACTAGGACAACAC
1 -GACAAAACCATAAGTCAAAAAATGAAAAAAATAACCAGGACAACAC
13101492 CACAAATTGA
Statistics
Matches: 152, Mismatches: 36, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
72 21 0.14
73 101 0.66
74 30 0.20
ACGTcount: A:0.55, C:0.15, G:0.15, T:0.15
Consensus pattern (73 bp):
GACAAAACCATAAGTCAAAAAATGAAAAAAATAACCAGGACAACACTGCAAGTCAAAAAATAAAA
AAAATCGA
Found at i:13101428 original size:38 final size:36
Alignment explanation
Indices: 13101227--13101441 Score: 112
Period size: 38 Copynumber: 5.9 Consensus size: 36
13101217 AGGGCGATTG
* * *
13101227 GGACAACACTATAAGTCAAAAAATAA-AGAACAACTA
1 GGACAACACTGTAAGTCAAAAAATAAGA-AAAAACCA
* * ** ** * *
13101263 GGATAATACTGTAAGTTGAAAAATAAAGAATGATCGA
1 GGACAACACTGTAAGTCAAAAAAT-AAGAAAAAACCA
* ** * * *
13101300 -GACAATACCATAAGTTAAAAAATAACAAAAATGATCA
1 GGACAACACTGTAAGTCAAAAAATAAGAAAAA--ACCA
** * * *
13101337 GGATGACACTGCAAGTCAAAAAATAA-AAAAAATCG
1 GGACAACACTGTAAGTCAAAAAATAAGAAAAAACCA
* ** *
13101372 GGACAAAACCATATGTCAAAAAATGAAGAAAATAACCA
1 GGACAACACTGTAAGTCAAAAAAT-AAGAAAA-AACCA
13101410 GGACAACACTGTAAGTCAAAAAATAAAGAAAA
1 GGACAACACTGTAAGTCAAAAAAT-AAGAAAA
13101442 CTAGGACGAC
Statistics
Matches: 130, Mismatches: 41, Indels: 14
0.70 0.22 0.08
Matches are distributed among these distances:
35 25 0.19
36 40 0.31
37 16 0.12
38 49 0.38
ACGTcount: A:0.56, C:0.13, G:0.14, T:0.16
Consensus pattern (36 bp):
GGACAACACTGTAAGTCAAAAAATAAGAAAAAACCA
Found at i:13101492 original size:38 final size:38
Alignment explanation
Indices: 13101391--13101548 Score: 121
Period size: 38 Copynumber: 4.3 Consensus size: 38
13101381 CATATGTCAA
* * * *** * *
13101391 AAAATGAAGAAAATAACCAGGACAACACTGTAAGTCAA
1 AAAATAAAGAAAATGACTAGGACAACACCACAAATCAG
*
13101429 AAAATAAAG-AAA--ACTAGGACGACACCACAAATCAG
1 AAAATAAAGAAAATGACTAGGACAACACCACAAATCAG
* *
13101464 AAAATGAAGAAAATGACTAGGACAACACCACAAAT-TG
1 AAAATAAAGAAAATGACTAGGACAACACCACAAATCAG
* * * * *
13101501 AAAATAAA-AGAATGACT-GGAACGACACCTCAAGTTAG
1 AAAATAAAGAAAATGACTAGG-ACAACACCACAAATCAG
13101538 AAAATAAAGAA
1 AAAATAAAGAA
13101549 CAATTGAGAT
Statistics
Matches: 96, Mismatches: 18, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
35 26 0.27
36 22 0.23
37 20 0.21
38 28 0.29
ACGTcount: A:0.56, C:0.16, G:0.16, T:0.13
Consensus pattern (38 bp):
AAAATAAAGAAAATGACTAGGACAACACCACAAATCAG
Found at i:13101548 original size:36 final size:37
Alignment explanation
Indices: 13101429--13101545 Score: 127
Period size: 36 Copynumber: 3.2 Consensus size: 37
13101419 TGTAAGTCAA
* *
13101429 AAAAT-AAAGAA-AACTAGGACGACACCACAAATCAG
1 AAAATAAAAGAATGACTAGGACGACACCACAAATTAG
*
13101464 AAAATGAAGAA-AATGACTAGGACAACACCACAAATT-G
1 AAAAT-AA-AAGAATGACTAGGACGACACCACAAATTAG
* *
13101501 AAAATAAAAGAATGACT-GGAACGACACCTCAAGTTAG
1 AAAATAAAAGAATGACTAGG-ACGACACCACAAATTAG
13101538 AAAATAAA
1 AAAATAAA
13101546 GAACAATTGA
Statistics
Matches: 69, Mismatches: 6, Indels: 12
0.79 0.07 0.14
Matches are distributed among these distances:
35 9 0.13
36 21 0.30
37 18 0.26
38 21 0.30
ACGTcount: A:0.56, C:0.16, G:0.15, T:0.13
Consensus pattern (37 bp):
AAAATAAAAGAATGACTAGGACGACACCACAAATTAG
Found at i:13101578 original size:36 final size:36
Alignment explanation
Indices: 13101524--13101620 Score: 113
Period size: 36 Copynumber: 2.7 Consensus size: 36
13101514 GACTGGAACG
* * * *
13101524 ACACCTCAAGTTAGAAAATAAAGAACAATTGAGATA
1 ACACCACAAGTCAAAAAATAAAAAACAATTGAGATA
**** *
13101560 ACATTGTAAGTCAAAAAATAAAAAACGATTGAGATA
1 ACACCACAAGTCAAAAAATAAAAAACAATTGAGATA
13101596 ACACCACAAGTCAAAAAATAAAAAA
1 ACACCACAAGTCAAAAAATAAAAAA
13101621 AAATGTCTGA
Statistics
Matches: 49, Mismatches: 12, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.58, C:0.13, G:0.11, T:0.18
Consensus pattern (36 bp):
ACACCACAAGTCAAAAAATAAAAAACAATTGAGATA
Found at i:13102916 original size:137 final size:137
Alignment explanation
Indices: 13102638--13102906 Score: 380
Period size: 137 Copynumber: 2.0 Consensus size: 137
13102628 CATCCTATAA
* *
13102638 TTTTT-TTTAAGGATTTCCTCCTAGCACCACCTTTATTTAAGCCGTCTCTTTTAGGTTTTCAACT
1 TTTTTATTTAAGGATTTCCTCCTAACACAACCTTTATTTAAGCCGTCTCTTTTAGGTTTTCAACT
*
13102702 TAAATGATCATTCTTTTGGTTCAAACCACCCTTTTCAGGTTTTCAATCTAAACCGTCTCTTTTTT
66 TAAATGATCATTCTTTTGGTTCAAACCACCCTTTTCAGGTTTTCAATCTAAACCATCTCTTTTTT
13102767 TTTTAAT
131 TTTTAAT
** * * * *
13102774 TTTTTATTTGAAGGATTTCCTCCTAACTTAACTTTTATTTAAGCTG-CTCTTTTAGGTTTTTAGC
1 TTTTTATTT-AAGGATTTCCTCCTAACACAACCTTTATTTAAGCCGTCTCTTTTAGGTTTTCAAC
* ** * * *
13102838 TTAAATGATCATTCTTTTGGTTCAGACCGTCCTTTTTATGTTTTTAATCTAAACCATCTCTTTTT
65 TTAAATGATCATTCTTTTGGTTCAAACCACCCTTTTCAGGTTTTCAATCTAAACCATCTCTTTTT
13102903 TTTT
130 TTTT
13102907 CTTTTTTTTA
Statistics
Matches: 116, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
136 5 0.04
137 81 0.70
138 30 0.26
ACGTcount: A:0.21, C:0.19, G:0.10, T:0.50
Consensus pattern (137 bp):
TTTTTATTTAAGGATTTCCTCCTAACACAACCTTTATTTAAGCCGTCTCTTTTAGGTTTTCAACT
TAAATGATCATTCTTTTGGTTCAAACCACCCTTTTCAGGTTTTCAATCTAAACCATCTCTTTTTT
TTTTAAT
Found at i:13102923 original size:18 final size:18
Alignment explanation
Indices: 13102900--13102940 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
13102890 ACCATCTCTT
* *
13102900 TTTTTTTCTTTTTTTTAG
1 TTTTTTACTTTATTTTAG
*
13102918 TTTTTTAGTTTATTTTAG
1 TTTTTTACTTTATTTTAG
13102936 TTTTT
1 TTTTT
13102941 GATTTTTTGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.10, C:0.02, G:0.07, T:0.80
Consensus pattern (18 bp):
TTTTTTACTTTATTTTAG
Found at i:13103071 original size:171 final size:168
Alignment explanation
Indices: 13102766--13103077 Score: 389
Period size: 171 Copynumber: 1.8 Consensus size: 168
13102756 GTCTCTTTTT
* * *
13102766 TTTTTAATTTTTTATTTGAAGGATTTCCTCCTAACTTAACTTTTATTTAAGCTGCTCTTTTAGGT
1 TTTTTAATTTTTTATTTGAAGGATTTCCTCATAACTTAACCTTCATTTAAGC-GCTCTTTTAGGT
* ** * * *
13102831 TTTTAGCTTAAATGATCATTCTTTTGGTTCAGACCGTCCTTTTTATGTTTTTAATCTAAACCATC
65 TTTCAGCTTAAACAATCATTCTTCTGGTTCAAACCG-CCTTTTTATGTTTTCAATCTAAACCATC
13102896 TCTTTTTTTTTCTTTTTTTTAGTTTTTTAGTTTATTTTAG
129 TCTTTTTTTTTCTTTTTTTTAGTTTTTTAGTTTATTTTAG
* *
13102936 TTTTTGATTTTTTGATTTGAAGGATTTCCTCATCA-TTCAACCTTCATTTAAGC-CATCATTTCT
1 TTTTTAATTTTTT-ATTTGAAGGATTTCCTCATAACTT-AACCTTCATTTAAGCGC-TC-TTT-T
*
13102999 A-GTTTTCAGCTTAAACAATCATTCTTCTGGTTCAAACCG-CTTTTTTTGGGTTTTCAATCTAAA
61 AGGTTTTCAGCTTAAACAATCATTCTTCTGGTTCAAACCGCCTTTTTAT--GTTTTCAATCTAAA
* *
13103062 TCGTCTCTTTTTTTTT
124 CCATCTCTTTTTTTTT
13103078 TAGTCTTTTT
Statistics
Matches: 121, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
169 8 0.07
170 16 0.13
171 95 0.79
172 2 0.02
ACGTcount: A:0.20, C:0.16, G:0.10, T:0.54
Consensus pattern (168 bp):
TTTTTAATTTTTTATTTGAAGGATTTCCTCATAACTTAACCTTCATTTAAGCGCTCTTTTAGGTT
TTCAGCTTAAACAATCATTCTTCTGGTTCAAACCGCCTTTTTATGTTTTCAATCTAAACCATCTC
TTTTTTTTTCTTTTTTTTAGTTTTTTAGTTTATTTTAG
Found at i:13103096 original size:24 final size:24
Alignment explanation
Indices: 13103069--13103118 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
13103059 AAATCGTCTC
* *
13103069 TTTTTTTT-TTAGTCTTTTTTTAT
1 TTTTTTTTGTTTGTATTTTTTTAT
*
13103092 TTTTTTTTGTTTGTATTTTTTTCT
1 TTTTTTTTGTTTGTATTTTTTTAT
13103116 TTT
1 TTT
13103119 CATCTTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 8 0.35
24 15 0.65
ACGTcount: A:0.06, C:0.04, G:0.06, T:0.84
Consensus pattern (24 bp):
TTTTTTTTGTTTGTATTTTTTTAT
Found at i:13103132 original size:14 final size:13
Alignment explanation
Indices: 13103067--13103132 Score: 57
Period size: 14 Copynumber: 4.9 Consensus size: 13
13103057 CTAAATCGTC
13103067 TCTTTTTTTTTTA
1 TCTTTTTTTTTTA
13103080 GTCTTTTTTTATTT-
1 -TCTTTTTTT-TTTA
*
13103094 T-TTTTTGTTTGTA
1 TCTTTTT-TTTTTA
13103107 T-TTTTTTCTTTTCA
1 TCTTTTTT-TTTT-A
13103121 TCTTTTTTTTTT
1 TCTTTTTTTTTT
13103133 TTAAGCAAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
12 8 0.18
13 12 0.27
14 15 0.34
15 9 0.20
ACGTcount: A:0.06, C:0.08, G:0.05, T:0.82
Consensus pattern (13 bp):
TCTTTTTTTTTTA
Found at i:13105866 original size:63 final size:63
Alignment explanation
Indices: 13105793--13105927 Score: 150
Period size: 63 Copynumber: 2.1 Consensus size: 63
13105783 ATCCAAAAAA
* * * * *
13105793 CTAGGCAAACAAAACAAT-AGTGGGATCGTGCCTTGCATTTGA-TCCTTTCATTACATAT-GAAA
1 CTAGGCAAACAAAACAATGA-TGGGACCATGCATTGCATTTGACT-CTTTCACTACAAATAG-AA
13105855 G
63 G
* *
13105856 CTAGGCAAACAAGACCATGATGGGACCATGCATTGCATTTGACTCTTTCACTACAAATAGAAG
1 CTAGGCAAACAAAACAATGATGGGACCATGCATTGCATTTGACTCTTTCACTACAAATAGAAG
*
13105919 CTAGACAAA
1 CTAGGCAAA
13105928 TTGGATAATA
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
63 58 0.95
64 3 0.05
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.25
Consensus pattern (63 bp):
CTAGGCAAACAAAACAATGATGGGACCATGCATTGCATTTGACTCTTTCACTACAAATAGAAG
Found at i:13106674 original size:14 final size:14
Alignment explanation
Indices: 13106655--13106683 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13106645 TATTCCTCCA
13106655 CCTATTGAATGTTC
1 CCTATTGAATGTTC
13106669 CCTATTGAATGTTC
1 CCTATTGAATGTTC
13106683 C
1 C
13106684 ATGTACTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (14 bp):
CCTATTGAATGTTC
Found at i:13107217 original size:144 final size:144
Alignment explanation
Indices: 13106983--13107380 Score: 437
Period size: 145 Copynumber: 2.7 Consensus size: 144
13106973 TTTAAAACAT
* * ** *
13106983 CAAAAATCATGAAATATTATGAAATTAAGATTTGGTAAGTTTCATGAAAA-TCTAAGCTTGGGAA
1 CAAAAATCATAAAATATTATAAAATTAAGATTTGAAAAGTTTCATGAAAATTC-AAGC-TCGGAA
* ** ***
13107047 A-GCCAAATTATGAAAATATGTTTATAAGAGATTTTGGTAATTTCACAT-TTTTCGAGCCACTGC
64 AGGTCAAATTACAAAAATATCCCTATAAGAGATTTTGGTAATTTCAC-TCTTTTCGAGCCACTGC
13107110 TATGATTTCAAATGCAC
128 TATGATTTCAAATGCAC
* *
13107127 CAAAAATCATAAAATATTATAAAATTAAGATCTGAAAAGTTTCATGAAAATTCAAGCTCGAAAAG
1 CAAAAATCATAAAATATTATAAAATTAAGATTTGAAAAGTTTCATGAAAATTCAAGCTCGGAAAG
* * * ** * *
13107192 GTCAAATTACAAAAATATCCCTATAAAAGTATTTTGGTAATTTTACTCTTTTCGGGGGACTGTTG
66 GTCAAATTACAAAAATATCCCTATAAGAG-ATTTTGGTAATTTCACTCTTTTCGAGCCACTGCTA
13107257 TGATTTCAAATGCAC
130 TGATTTCAAATGCAC
* * ** * *
13107272 AAAAAATCATAAAATATTATAAAATTTAGATTTGAAATA-TTTCACAAAAATCCAAGCTCGGGAA
1 CAAAAATCATAAAATATTATAAAATTAAGATTTGAAA-AGTTTCATGAAAATTCAAGCTCGGAAA
* *
13107336 GGTTAAATTACAAAAATA-CCCGTTATAAGGATATTTTGGTAATTT
65 GGTCAAATTACAAAAATATCCC--TATAA-GAGATTTTGGTAATTT
13107381 TGCCCTCTTC
Statistics
Matches: 215, Mismatches: 31, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
143 5 0.02
144 75 0.35
145 115 0.53
146 19 0.09
147 1 0.00
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (144 bp):
CAAAAATCATAAAATATTATAAAATTAAGATTTGAAAAGTTTCATGAAAATTCAAGCTCGGAAAG
GTCAAATTACAAAAATATCCCTATAAGAGATTTTGGTAATTTCACTCTTTTCGAGCCACTGCTAT
GATTTCAAATGCAC
Found at i:13108040 original size:38 final size:38
Alignment explanation
Indices: 13107984--13108079 Score: 111
Period size: 38 Copynumber: 2.5 Consensus size: 38
13107974 TCGAGACGAT
* * *
13107984 ACCATAAGTCAAAAAATAAAAAATGTGACAAGGACAAC
1 ACCACAAGTCAAAAAATAAAAAATATAACAAGGACAAC
* * * * *
13108022 ACCTCAAGTTAAAAAATAAATAATATAACCAGGATAAC
1 ACCACAAGTCAAAAAATAAAAAATATAACAAGGACAAC
*
13108060 ACCACAAGTGAAAAAATAAA
1 ACCACAAGTCAAAAAATAAA
13108080 GAACGACCAG
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.58, C:0.16, G:0.10, T:0.16
Consensus pattern (38 bp):
ACCACAAGTCAAAAAATAAAAAATATAACAAGGACAAC
Found at i:13108289 original size:36 final size:36
Alignment explanation
Indices: 13107957--13108886 Score: 285
Period size: 36 Copynumber: 25.4 Consensus size: 36
13107947 ACACTGCAAA
* * * *
13107957 TCAAAAAATAAA-AACGATC-GAGACGATACCATAAG
1 TCAAAAAATAAAGAATGATCAG-GACAACACCACAAG
* *
13107992 TCAAAAAATAAAAAATG-TGACAAGGACAACACCTCAAG
1 TCAAAAAATAAAGAATGAT--C-AGGACAACACCACAAG
* * *
13108030 TTAAAAAATAAATAAT-ATAACCAGGATAACACCACAAG
1 TCAAAAAATAAAGAATGAT---CAGGACAACACCACAAG
* * * * ** ***
13108068 TGAAAAAATAAAGAACGACCAGAATGACACTGTAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * ** *
13108104 TCAAAAAATAAAGGATGA-CTAGGATAACATCGTATG
1 TCAAAAAATAAAGAATGATC-AGGACAACACCACAAG
* ** **
13108140 TCAAAAAATAAAGAACGATTGGGACAACACCGTAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * * * *
13108176 TTAAGAAATAAA-TATAATCAGGACGACACCATAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * *
13108211 TCAGAGAATAAAGGA-GA-CAAGA-ATGACA-CAGCAAG
1 TCAAAAAATAAAGAATGATCAGGACA--ACACCA-CAAG
* * *
13108246 TTAAAAAAATAAAGAACGATCAGGACAATACCACAAG
1 -TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
** ** * **
13108283 TCAAAAAATAAAGAATGGCCA-GATTGACATCGTAAG
1 TCAAAAAATAAAGAATGATCAGGA-CAACACCACAAG
* * * * * *
13108319 T-ATAAAATAAAGAATAACCTGGACAATAGCACAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * *
13108354 TTAAAAAATAAAGATATGA-CAGGGACAGCACTACAAG
1 TCAAAAAATAAAGA-ATGATCA-GGACAACACCACAAG
* * *
13108391 TCAAAAAATAAAGAAAATGATCGGGACAACACCATATG
1 TCAAAAAATAAAG--AATGATCAGGACAACACCACAAG
* * * *
13108429 TCAAAAAATAAAAAAT-ATGACTGGAACAACATCGCAAG
1 TCAAAAAATAAAGAATGAT--CAGG-ACAACACCACAAG
* * *
13108467 TCAAAAAATAAAGAAT-AACTGGGACAACACCGCAAG
1 TCAAAAAATAAAGAATGATC-AGGACAACACCACAAG
* * * * ** *
13108503 TTAAAAAGTAAAAAATGACCAGGATGACACCTCAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * *
13108539 TCAAAAAATAAAGAATGATCGGGACGACATCGCAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * ** *
13108575 TCAAAAAATAAAGAAATAAAAAATGACCGAGATGACACCACAAT
1 TCAAAAAATAAAG-AAT----GAT--CAG-GACAACACCACAAG
* * * ** *
13108619 TCAAAAAATAAAGAACGACCAGAATGACACCGCAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * * **
13108655 TCAAAAATTAAAGAATATGATAAGGACAAAATCGTAAG
1 TCAAAAAATAAAG-A-ATGATCAGGACAACACCACAAG
* * * * *
13108693 TCAAAAAATAAAAAATGATCAAGATAACACTATAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * ** ** *
13108729 TCAGAAAGTAAAGAAAGATTGGGATGACACCACAGG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* *
13108765 TCGAAAACTAAA-AGATGA-CTAGGACAACACCACAAG
1 TCAAAAAATAAAGA-ATGATC-AGGACAACACCACAAG
** ** ** * ***
13108801 TTGAAAAATAAAGAACAATTGGGATAACATTGCAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
* * * * ** *
13108837 TTAGAAAATAAAGAATGATCA-GAAAATATTAGAAG
1 TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
13108872 TCAAAAAATAAAGAA
1 TCAAAAAATAAAGAA
13108887 CAACTGAGAC
Statistics
Matches: 657, Mismatches: 192, Indels: 92
0.70 0.20 0.10
Matches are distributed among these distances:
34 6 0.01
35 95 0.14
36 336 0.51
37 50 0.08
38 134 0.20
39 7 0.01
41 2 0.00
43 4 0.01
44 23 0.04
ACGTcount: A:0.53, C:0.15, G:0.16, T:0.16
Consensus pattern (36 bp):
TCAAAAAATAAAGAATGATCAGGACAACACCACAAG
Found at i:13108609 original size:80 final size:80
Alignment explanation
Indices: 13108511--13108669 Score: 221
Period size: 80 Copynumber: 2.0 Consensus size: 80
13108501 AGTTAAAAAG
* * * * * *
13108511 TAAAAAATGACCAGGATGACACCTCAAGTCAAAAAATAAAGAATGATCGGGACGACATCGCAAGT
1 TAAAAAATGACCAGGATGACACCACAAGTCAAAAAATAAAGAACGACCAGAACGACACCGCAAGT
13108576 CAAAAAATAAAGAAA
66 CAAAAAATAAAGAAA
* *
13108591 TAAAAAATGACC-GAGATGACACCACAATTCAAAAAATAAAGAACGACCAGAATGACACCGCAAG
1 TAAAAAATGACCAG-GATGACACCACAAGTCAAAAAATAAAGAACGACCAGAACGACACCGCAAG
*
13108655 TCAAAAATTAAAGAA
65 TCAAAAAATAAAGAA
13108670 TATGATAAGG
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
79 1 0.01
80 68 0.99
ACGTcount: A:0.53, C:0.18, G:0.16, T:0.13
Consensus pattern (80 bp):
TAAAAAATGACCAGGATGACACCACAAGTCAAAAAATAAAGAACGACCAGAACGACACCGCAAGT
CAAAAAATAAAGAAA
Found at i:13108862 original size:18 final size:16
Alignment explanation
Indices: 13108834--13108886 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
13108824 ATAACATTGC
*
13108834 AAGTTAGAAAATAAAG
1 AAGTCAGAAAATAAAG
*
13108850 AATGATCAGAAAATATTAG
1 AA-G-TCAGAAAATA-AAG
*
13108869 AAGTCAAAAAATAAAG
1 AAGTCAGAAAATAAAG
13108885 AA
1 AA
13108887 CAACTGAGAC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
16 6 0.20
17 10 0.33
18 10 0.33
19 4 0.13
ACGTcount: A:0.62, C:0.04, G:0.15, T:0.19
Consensus pattern (16 bp):
AAGTCAGAAAATAAAG
Found at i:13110781 original size:8 final size:8
Alignment explanation
Indices: 13110768--13110815 Score: 52
Period size: 8 Copynumber: 6.6 Consensus size: 8
13110758 TTTCTTTTCA
13110768 TTTTTCTC
1 TTTTTCTC
13110776 TTTTTCTC
1 TTTTTCTC
13110784 -TTTT-T-
1 TTTTTCTC
13110789 TTTTTC-C
1 TTTTTCTC
*
13110796 TTTTTTTC
1 TTTTTCTC
13110804 TTTTTCT-
1 TTTTTCTC
13110811 TTTTT
1 TTTTT
13110816 TGACATGCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
6 5 0.15
7 14 0.41
8 15 0.44
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TTTTTCTC
Found at i:13110782 original size:20 final size:21
Alignment explanation
Indices: 13110757--13110807 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
13110747 ACCATTTTTC
13110757 TTTTCTTTTCATTTTT-CTCT
1 TTTTCTTTTCATTTTTCCTCT
** *
13110777 TTTTCTCTTTTTTTTTTCCTTT
1 TTTTCT-TTTCATTTTTCCTCT
13110799 TTTTCTTTT
1 TTTTCTTTT
13110808 TCTTTTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 6 0.23
21 11 0.42
22 9 0.35
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTCTTTTCATTTTTCCTCT
Found at i:13110793 original size:14 final size:14
Alignment explanation
Indices: 13110776--13110816 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
13110766 CATTTTTCTC
13110776 TTTTTCTC-TTTTT
1 TTTTTCTCTTTTTT
13110789 TTTTTC-CTTTTTT
1 TTTTTCTCTTTTTT
13110802 TCTTTT-TCTTTTTT
1 T-TTTTCTCTTTTTT
13110816 T
1 T
13110817 GACATGCCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.04
13 12 0.48
14 12 0.48
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (14 bp):
TTTTTCTCTTTTTT
Found at i:13110799 original size:28 final size:27
Alignment explanation
Indices: 13110757--13110816 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
13110747 ACCATTTTTC
*
13110757 TTTTCTTTTCATTTTTCTCTTTTTCTCT
1 TTTTTTTTTCATTTTTCTCTTTTTCT-T
* *
13110785 TTTTTTTTTCCTTTTTTTCTTTTTCTT
1 TTTTTTTTTCATTTTTCTCTTTTTCTT
13110812 TTTTT
1 TTTTT
13110817 GACATGCCCC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 6 0.21
28 23 0.79
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.82
Consensus pattern (27 bp):
TTTTTTTTTCATTTTTCTCTTTTTCTT
Found at i:13110808 original size:20 final size:21
Alignment explanation
Indices: 13110757--13110814 Score: 73
Period size: 20 Copynumber: 2.7 Consensus size: 21
13110747 ACCATTTTTC
*
13110757 TTTTCTTTTCATTTTTCTCTTT
1 TTTTCTTTT-TTTTTTCTCTTT
*
13110779 TTCTCTTTTTTTTTTC-CTTT
1 TTTTCTTTTTTTTTTCTCTTT
13110799 TTTTCTTTTTCTTTTT
1 TTTTCTTTTT-TTTTT
13110815 TTGACATGCC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
20 13 0.41
21 11 0.34
22 8 0.25
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTTCTTTTTTTTTTCTCTTT
Found at i:13114832 original size:19 final size:17
Alignment explanation
Indices: 13114789--13114838 Score: 66
Period size: 18 Copynumber: 2.9 Consensus size: 17
13114779 CCATGAAAAC
13114789 TCTTTTTTTTCTTTTCT
1 TCTTTTTTTTCTTTTCT
*
13114806 TCCTTTTTCTCTCTTTTCT
1 T-CTTTTT-TTTCTTTTCT
13114825 TCTTTTTTTT-TTTT
1 TCTTTTTTTTCTTTT
13114839 TTTTTTGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
16 4 0.14
17 3 0.10
18 12 0.41
19 10 0.34
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (17 bp):
TCTTTTTTTTCTTTTCT
Found at i:13114841 original size:19 final size:19
Alignment explanation
Indices: 13114791--13114839 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
13114781 ATGAAAACTC
13114791 TTTTTTTTCTTTTCTTCCT
1 TTTTTTTTCTTTTCTTCCT
* *
13114810 TTTTCTCTCTTTTCTT-CT
1 TTTTTTTTCTTTTCTTCCT
13114828 TTTTTTTT-TTTT
1 TTTTTTTTCTTTT
13114840 TTTTTGGGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 4 0.15
18 8 0.31
19 14 0.54
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTTTTTCTTTTCTTCCT
Found at i:13117283 original size:63 final size:62
Alignment explanation
Indices: 13117168--13117323 Score: 152
Period size: 63 Copynumber: 2.5 Consensus size: 62
13117158 GTGAAGTTTC
* * * * *
13117168 CACTACATCAAAAAAACTAGGCAAACAAAACAATAGTGGGACCGTGCCTTGCATTTGATCCTA-T
1 CACTACAT-AAAGAAGCTAGGCAAACAAGACAATAGTGGGACCATGCATTGCATTTGA--CTATT
* * * * *
13117232 CATTACATAAAGAAGCTAGGCAAACAAGACCATGGTGGGATCATGGATTGCATTTGACTATTT
1 CACTACATAAAGAAGCTAGGCAAACAAGACAATAGTGGGACCATGCATTGCATTTGACTA-TT
** *
13117295 CACTACATATGGGAGCTAGGCAAACAAGA
1 CACTACATAAAGAAGCTAGGCAAACAAGA
13117324 TAATGGTAAG
Statistics
Matches: 76, Mismatches: 14, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
61 3 0.04
63 66 0.87
64 7 0.09
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (62 bp):
CACTACATAAAGAAGCTAGGCAAACAAGACAATAGTGGGACCATGCATTGCATTTGACTATT
Found at i:13118762 original size:145 final size:144
Alignment explanation
Indices: 13118305--13118791 Score: 600
Period size: 145 Copynumber: 3.4 Consensus size: 144
13118295 GATTTTAAAA
* * * ** * * **
13118305 CACCAAAAATTATGAAATATTATGAAATTAAGATTTGAAAAGTTTTGTGAAAATCCGAGCTCGAA
1 CACCAAAAATTATGAAATATTATAAAATTGAGATCTGAAAAGTTTCATGAAAATCTGAGCTTGGG
** * * * *
13118370 AAGATCAAATTACAAAAATACCTTTATAAAGGTATTTTGGTAATTTTACACTTTTCAAGGTACTG
66 AAGGCCAAATTACGAAAATACCTTTATAAAGGTATTTTGGTAATTTCACACTTTT-GAGGGACTG
* *
13118435 CTGTGATTTCAAATG
130 TTGTTATTTCAAATG
* * * * * *
13118450 CACCAAAAAATATGAAATATTATAAAAATGTGATCTGGAGAGTTTCATGACAATCTGAGCTTGGG
1 CACCAAAAATTATGAAATATTATAAAATTGAGATCTGAAAAGTTTCATGAAAATCTGAGCTTGGG
* ** ** * *
13118515 AAAGCCAAATTACG-AAATACCCCTATAAAGGTATTTTGGTAATTTCGTACTTCTTG-GAGATTG
66 AAGGCCAAATTACGAAAATACCTTTATAAAGGTATTTTGGTAATTTCACACTT-TTGAGGGACTG
13118578 TTGTTATTTCAAATG
130 TTGTTATTTCAAATG
*
13118593 CACCAAAAATTATGAAATATTATAAAATTGAGATATGAAAAGTTTCATGAAAATCTGAGCTTGGG
1 CACCAAAAATTATGAAATATTATAAAATTGAGATCTGAAAAGTTTCATGAAAATCTGAGCTTGGG
* *
13118658 AAGGCCAAATTACGAAAATACATTTATAAGGGTATTTTGGTAATTTCACACTTATTGAGGGACTG
66 AAGGCCAAATTACGAAAATACCTTTATAAAGGTATTTTGGTAATTTCACACTT-TTGAGGGACTG
13118723 TTGTTATTTCAAATG
130 TTGTTATTTCAAATG
* * * *
13118738 CACCAAAAATCATGAAATATTATAAAATTTAGCTCTAAAAAGTTTCATGAAAAT
1 CACCAAAAATTATGAAATATTATAAAATTGAGATCTGAAAAGTTTCATGAAAAT
13118792 TCAAGTTCAG
Statistics
Matches: 287, Mismatches: 52, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
143 88 0.31
144 68 0.24
145 131 0.46
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (144 bp):
CACCAAAAATTATGAAATATTATAAAATTGAGATCTGAAAAGTTTCATGAAAATCTGAGCTTGGG
AAGGCCAAATTACGAAAATACCTTTATAAAGGTATTTTGGTAATTTCACACTTTTGAGGGACTGT
TGTTATTTCAAATG
Found at i:13119001 original size:10 final size:10
Alignment explanation
Indices: 13118986--13119025 Score: 53
Period size: 10 Copynumber: 4.0 Consensus size: 10
13118976 TTTTTTGTAA
13118986 ATTTGACTTT
1 ATTTGACTTT
**
13118996 ATTTGACTGG
1 ATTTGACTTT
13119006 ATTTGACTTT
1 ATTTGACTTT
*
13119016 GTTTGACTTT
1 ATTTGACTTT
13119026 GAATTTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.17, C:0.10, G:0.17, T:0.55
Consensus pattern (10 bp):
ATTTGACTTT
Found at i:13119011 original size:20 final size:20
Alignment explanation
Indices: 13118986--13119023 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
13118976 TTTTTTGTAA
13118986 ATTTGACTTTATTTGACTGG
1 ATTTGACTTTATTTGACTGG
*
13119006 ATTTGACTTTGTTTGACT
1 ATTTGACTTTATTTGACT
13119024 TTGAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.11, G:0.18, T:0.53
Consensus pattern (20 bp):
ATTTGACTTTATTTGACTGG
Found at i:13125209 original size:112 final size:112
Alignment explanation
Indices: 13125012--13125221 Score: 339
Period size: 112 Copynumber: 1.9 Consensus size: 112
13125002 GATAAAAAAA
** * * * *
13125012 AAAAAAATAAGGAAGGTGATTAGAATATATAATATAATCATATCTTATGTTTGGTATATGAAATT
1 AAAAAAATAAGGAAGGCAACTAGAATATATAACATAATCATATCTCATGTTTGATATATGAAATT
13125077 AAGATAGGATGATATCTATCCTACACCATGTTTGGTGTGTCAATATG
66 AAGATAGGATGATATCTATCCTACACCATGTTTGGTGTGTCAATATG
*
13125124 AAAAAAATAAGGAAGGCAACTGGAATATATAACATAATCATATCTCATGTTTGATATATGAAATT
1 AAAAAAATAAGGAAGGCAACTAGAATATATAACATAATCATATCTCATGTTTGATATATGAAATT
* *
13125189 AAGATAGGATGATTTTTATCCTACACCATGTTT
66 AAGATAGGATGATATCTATCCTACACCATGTTT
13125222 AATATATCAA
Statistics
Matches: 89, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
112 89 1.00
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.34
Consensus pattern (112 bp):
AAAAAAATAAGGAAGGCAACTAGAATATATAACATAATCATATCTCATGTTTGATATATGAAATT
AAGATAGGATGATATCTATCCTACACCATGTTTGGTGTGTCAATATG
Found at i:13126135 original size:17 final size:18
Alignment explanation
Indices: 13126103--13126136 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13126093 CTAGATTTTC
13126103 TCTAAAAGAATTTCAAAA
1 TCTAAAAGAATTTCAAAA
*
13126121 TCTAAAA-ATTTTCAAA
1 TCTAAAAGAATTTCAAA
13126137 TTTATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.53, C:0.12, G:0.03, T:0.32
Consensus pattern (18 bp):
TCTAAAAGAATTTCAAAA
Found at i:13128843 original size:16 final size:18
Alignment explanation
Indices: 13128812--13128845 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
13128802 ATAAGATGGA
13128812 TGAAGCAATCAAACAAAG
1 TGAAGCAATCAAACAAAG
13128830 TGAAG-AAT-AAACAAAG
1 TGAAGCAATCAAACAAAG
13128846 ATTAATGAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 3 0.19
18 5 0.31
ACGTcount: A:0.59, C:0.12, G:0.18, T:0.12
Consensus pattern (18 bp):
TGAAGCAATCAAACAAAG
Found at i:13130026 original size:29 final size:28
Alignment explanation
Indices: 13130002--13130084 Score: 71
Period size: 30 Copynumber: 2.8 Consensus size: 28
13129992 CCTAATAAAT
13130002 TTTTTAAAAATATTTTAAAA-ATAATTTAA
1 TTTTTAAAAATATTTTAAAATATAA--TAA
*
13130031 -TATTAAAAATTATTATTAAAATATAATAA
1 TTTTTAAAAA-TATT-TTAAAATATAATAA
* *
13130060 TATTTTAATAAAAATTTTATAATAT
1 T-TTTTAA-AAATATTTTAAAATAT
13130085 TTTTTCACTC
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
28 8 0.18
29 7 0.16
30 14 0.32
31 12 0.27
32 3 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (28 bp):
TTTTTAAAAATATTTTAAAATATAATAA
Found at i:13130346 original size:25 final size:24
Alignment explanation
Indices: 13130300--13130346 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
13130290 GTTCAAAACA
* * *
13130300 AAAATTTTTATTTTTTAGTTTTAG
1 AAAATTTTGATTTTTAACTTTTAG
13130324 AAAATTTTGATATTTTAACTTTT
1 AAAATTTTGAT-TTTTAACTTTT
13130347 CCTAAAAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (24 bp):
AAAATTTTGATTTTTAACTTTTAG
Found at i:13130376 original size:11 final size:11
Alignment explanation
Indices: 13130362--13130386 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13130352 AAATTTTTGA
13130362 AAATTTATTAT
1 AAATTTATTAT
13130373 AAATTTATTAT
1 AAATTTATTAT
13130384 AAA
1 AAA
13130387 GAGTTAATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
AAATTTATTAT
Found at i:13130423 original size:5 final size:5
Alignment explanation
Indices: 13130413--13130438 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
13130403 TTTTTAAAAA
13130413 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
13130439 TAAAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:13132522 original size:17 final size:17
Alignment explanation
Indices: 13132502--13132548 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
13132492 TGTTTTCTAA
13132502 ATTCTTTTTTTACAAGC
1 ATTCTTTTTTTACAAGC
*
13132519 ATTCTTTATTTT-GAAGC
1 ATTCTTT-TTTTACAAGC
* *
13132536 TTTCTTGTTTTAC
1 ATTCTTTTTTTAC
13132549 TTTCGGTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
16 4 0.17
17 16 0.67
18 4 0.17
ACGTcount: A:0.19, C:0.15, G:0.09, T:0.57
Consensus pattern (17 bp):
ATTCTTTTTTTACAAGC
Found at i:13137010 original size:35 final size:35
Alignment explanation
Indices: 13136970--13137041 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
13136960 ATTTACTTAA
13136970 ATTATATGTATGGATTAGAGATGAATTAAGTTCAT
1 ATTATATGTATGGATTAGAGATGAATTAAGTTCAT
*
13137005 ATTATATGTATGGATTAGAGATGTATTAAGTTCAT
1 ATTATATGTATGGATTAGAGATGAATTAAGTTCAT
13137040 AT
1 AT
13137042 GCATAGAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.36, C:0.03, G:0.19, T:0.42
Consensus pattern (35 bp):
ATTATATGTATGGATTAGAGATGAATTAAGTTCAT
Found at i:13138112 original size:16 final size:18
Alignment explanation
Indices: 13138077--13138113 Score: 51
Period size: 16 Copynumber: 2.2 Consensus size: 18
13138067 AAATTCTTTC
13138077 TTTACAAGCATTCTTTAT
1 TTTACAAGCATTCTTTAT
*
13138095 TTTA-AAGCTTTC-TTAT
1 TTTACAAGCATTCTTTAT
13138111 TTT
1 TTT
13138114 CAGTTTACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 7 0.39
18 4 0.22
ACGTcount: A:0.24, C:0.14, G:0.05, T:0.57
Consensus pattern (18 bp):
TTTACAAGCATTCTTTAT
Found at i:13145940 original size:104 final size:104
Alignment explanation
Indices: 13145822--13146036 Score: 430
Period size: 104 Copynumber: 2.1 Consensus size: 104
13145812 GAAATAATGA
13145822 AAGCATAATTATTCAATTATAATCCAAATTATTTCAATGCAAAGCAAAGTACTTAACTCAAACAT
1 AAGCATAATTATTCAATTATAATCCAAATTATTTCAATGCAAAGCAAAGTACTTAACTCAAACAT
13145887 ATGTAAGTATTCAATCATATATTTCAATCAAAATCATAT
66 ATGTAAGTATTCAATCATATATTTCAATCAAAATCATAT
13145926 AAGCATAATTATTCAATTATAATCCAAATTATTTCAATGCAAAGCAAAGTACTTAACTCAAACAT
1 AAGCATAATTATTCAATTATAATCCAAATTATTTCAATGCAAAGCAAAGTACTTAACTCAAACAT
13145991 ATGTAAGTATTCAATCATATATTTCAATCAAAATCATAT
66 ATGTAAGTATTCAATCATATATTTCAATCAAAATCATAT
13146030 AAGCATA
1 AAGCATA
13146037 TGCAAAATAC
Statistics
Matches: 111, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 111 1.00
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (104 bp):
AAGCATAATTATTCAATTATAATCCAAATTATTTCAATGCAAAGCAAAGTACTTAACTCAAACAT
ATGTAAGTATTCAATCATATATTTCAATCAAAATCATAT
Found at i:13155904 original size:208 final size:207
Alignment explanation
Indices: 13155528--13155904 Score: 587
Period size: 208 Copynumber: 1.8 Consensus size: 207
13155518 ATGATGGAAA
** * **
13155528 AGCAAAACCATGAAGCAAAGGAACCAAAATGGGAGCTTTATGTTGGGCTAAATAGCTGCTGTCAT
1 AGCAAAACCATGAAGCAAAGGAACCAAAATGGGAGCTTTATGGGGGGCTAAATAGCTACTACCAT
* ** * *
13155593 GGGAGGAAACATGGGCTATTCAGTAGCCTAAGAAGAAGCTAAAAATGCAACCATAAAATGAAAGC
66 GGAAGGAAACACAGGCTATTCAATAGCCCAAGAAGAAGCTAAAAATGCAACCATAAAATGAAAGC
13155658 AAAAACAAAGCAAATAAAGCTTGGAACTTTACTAACAAACACCAGACATAAGGCACTTAAGAAAT
131 AAAAACAAAGCAAATAAAGCTTGGAACTTTACTAACAAACACCAGACATAAGGCACTTAAGAAAT
13155723 GCATGATTGGGG
196 GCATGATTGGGG
13155735 AGCAAGAACCAT-AGAGCAAAGGAACCAAAATGGGAGCTTTATGGGGGGCTAAATAGCTACTACC
1 AGCAA-AACCATGA-AGCAAAGGAACCAAAATGGGAGCTTTATGGGGGGCTAAATAGCTACTACC
*
13155799 ATGGAAGGAAACACAGGCTATTCAATAGCCCAAGAAGATGCTAAAAATGCAACCATAAAATGAAA
64 ATGGAAGGAAACACAGGCTATTCAATAGCCCAAGAAGAAGCTAAAAATGCAACCATAAAATGAAA
* * *
13155864 GCAAAGACAAAGCAAA-AAGAGTTTGGAACTTTATTAACAAA
129 GCAAAAACAAAGCAAATAA-AGCTTGGAACTTTACTAACAAA
13155905 TACAAAACAT
Statistics
Matches: 153, Mismatches: 14, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
207 8 0.05
208 145 0.95
ACGTcount: A:0.44, C:0.16, G:0.22, T:0.18
Consensus pattern (207 bp):
AGCAAAACCATGAAGCAAAGGAACCAAAATGGGAGCTTTATGGGGGGCTAAATAGCTACTACCAT
GGAAGGAAACACAGGCTATTCAATAGCCCAAGAAGAAGCTAAAAATGCAACCATAAAATGAAAGC
AAAAACAAAGCAAATAAAGCTTGGAACTTTACTAACAAACACCAGACATAAGGCACTTAAGAAAT
GCATGATTGGGG
Found at i:13157661 original size:3 final size:3
Alignment explanation
Indices: 13157648--13157693 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
13157638 CTTACATCCA
*
13157648 TAT TCT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
13157694 GATAGTAGAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13158187 original size:15 final size:16
Alignment explanation
Indices: 13158167--13158204 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
13158157 AGAAAAAGGG
* *
13158167 AAGATAAATAA-AAGA
1 AAGATAAAGAAGAAAA
13158182 AAGATAAAGAAGAAAA
1 AAGATAAAGAAGAAAA
13158198 AAGATAA
1 AAGATAA
13158205 GAAAGTAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 10 0.50
16 10 0.50
ACGTcount: A:0.74, C:0.00, G:0.16, T:0.11
Consensus pattern (16 bp):
AAGATAAAGAAGAAAA
Found at i:13160803 original size:39 final size:39
Alignment explanation
Indices: 13160742--13160822 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
13160732 CACAAACTAG
13160742 TAATAAATTAATAAGGATCCATATTCCATTTTCCCAAAT
1 TAATAAATTAATAAGGATCCATATTCCATTTTCCCAAAT
13160781 TAATAAATTAATAAAGGA-CCATATTCCATTTTCCCAAAT
1 TAATAAATTAAT-AAGGATCCATATTCCATTTTCCCAAAT
13160820 TAA
1 TAA
13160823 AATGTAATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
39 36 0.88
40 5 0.12
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.35
Consensus pattern (39 bp):
TAATAAATTAATAAGGATCCATATTCCATTTTCCCAAAT
Found at i:13162021 original size:16 final size:16
Alignment explanation
Indices: 13162000--13162034 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
13161990 CTGAAGGACA
13162000 CATGCCCTCTCTTTTT
1 CATGCCCTCTCTTTTT
13162016 CATGCCCTCTCTTTTT
1 CATGCCCTCTCTTTTT
13162032 CAT
1 CAT
13162035 TGGATGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.09, C:0.37, G:0.06, T:0.49
Consensus pattern (16 bp):
CATGCCCTCTCTTTTT
Found at i:13163167 original size:55 final size:55
Alignment explanation
Indices: 13163067--13163200 Score: 144
Period size: 55 Copynumber: 2.4 Consensus size: 55
13163057 CATCCATCAA
* ** *** *
13163067 TATAAACTTGTATTTTTTAATTTTCTTACCTATACCAATGGTTAGAGACTGTCGG
1 TATAAACTTATATGCTTTAATTTTCTTACCTATACCAACAATTAGAGACTGTCAG
* * * *
13163122 TATAGAA-TTGTATGCTTTAATTTTCTTACCTTTATCAACAATTAGAGATTGTCAG
1 TATA-AACTTATATGCTTTAATTTTCTTACCTATACCAACAATTAGAGACTGTCAG
*
13163177 TATAAACTTATATGTTTTAATTTT
1 TATAAACTTATATGCTTTAATTTT
13163201 TTTATTATAT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 2 0.03
55 62 0.94
56 2 0.03
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.46
Consensus pattern (55 bp):
TATAAACTTATATGCTTTAATTTTCTTACCTATACCAACAATTAGAGACTGTCAG
Found at i:13176591 original size:181 final size:179
Alignment explanation
Indices: 13175894--13177337 Score: 1064
Period size: 181 Copynumber: 8.1 Consensus size: 179
13175884 TGAATATACT
* * * *
13175894 AAAACAAAAGGCCATAACAATTTTAAATGGATAATTGTTC-AATAGTCATAAGTATTTGAACTTG
1 AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* ** *
13175958 TTTAGTAAACAGATTTATTTTTTCAAA-ACTCTTGCTTATTAATTTTTTGAATGTTAATAAATTA
66 TTTAGTAAACAGATTTATTTTTT-AAATA-TC-T-CTCATTAATTTTTCAAATATTAATAAATTA
** * * **
13176022 GTATTATTTTATTCCGAATAAGCTTGTATGATTTGAAACAATTATTACAT-ATC
127 GTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGA-C
* * * * * * * * * *
13176075 TAAACTAAAGGTCAGAACAATTTGAAATAGATAAATATTCTAATAATCTTAACTATTTAAACTAG
1 AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * * * * * *
13176140 TTCAATAAACACATTTATTTTTT-AA-ATCTCTTATTAATTTTTGAAATGTTATTAAATTAGTAT
66 TTTAGTAAACAGATTTATTTTTTAAATATCTCTCATTAATTTTTCAAATATTAATAAATTAGTAT
*** * * *
13176203 TATTTT-TATCCAAATAAGCTTGTACG-ATCAGAAACAATTGTTTTATGAG
131 TATTTTAT-TTTGAATAAGCTTGTATGAAT-TGAAACAATTGTTTTATGAC
* * * * * * *
13176252 AAAACACAAA--TCATAACTATTTGAGATTGATATTTGTTCAAATATTCATAACTGTTTGAACTG
1 AAAACA-AAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT
* * * * * * * *
13176315 GTTT-GAAAATA-ACTTTAGTTTTTAAATCTCTTGCTAATTAATTTTTGAAATATTAGTAAAGTA
65 GTTTAGTAAACAGA-TTTATTTTTTAAATATC-T-CTCATTAATTTTTCAAATATTAATAAATTA
* * * *
13176378 ATATTATTTTA-TTTCAGATAAGTTTTTATGAATTGAAACAATTGTTTTATGAC
127 GTATTATTTTATTTTGA-ATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
* ** * * * *
13176431 AAAATAAAAGGTCATAATGATTTTAGATAGAAAATTGTTCAAATAGTCA-AATCTATTTAAACTT
1 AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAA-CTATTTGAACTT
* *
13176495 GTTTAGTAAACAGATTTATTTTTTCAAATATCTTACTCATTAATTTTTCAAATGTCAAT-AATTA
65 GTTTAGTAAACAGATTTATTTTTT-AAATATC-T-CTCATTAATTTTTCAAATATTAATAAATTA
* * *
13176559 GTATTATTTTATTTTTAAAAAGCTTGTATGAATTGAAATAATTGTTTTATGAC
127 GTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
* * * * ** * **
13176612 TAAACAAAAGATTAGAATGATTTGAAATAGATAATTGTTCTAATAGTTTTAACTATTTGAA-TTG
1 AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * * * * * * *
13176676 ATTCGACAAACACATTTATTTTTTTTAA-ATCTCTTATTAA-TTTTCGGAATATTATTAAATTAG
66 TTTAG-TAAACAGATTTA-TTTTTTAAATATCTCTCATTAATTTTTC-AAATATTAATAAATTAG
** * **
13176739 TATTATTTTGGTTCGAATAAGCTTGTATGAAAAGAAACAATTGTTTTATGAC
128 TATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
* * * * * **
13176791 AAAA-TAAA-GACTATAACGATTTGAGATAGATGATTGTTCAAATAGTCATAACTATTCAAACTA
1 AAAACAAAAGGTC-ATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT-
* * * * * * *
13176854 T-TTTTGTAAATAGATTTAGTTTTT--ATATCTCTCATTAATTGTTAAAATATTAATAAATCAAT
64 TGTTTAGTAAACAGATTTATTTTTTAAATATCTCTCATTAATTTTTCAAATATTAATAAATTAGT
* * * *
13176916 GTTAATTTATTTTGAATAA--TT-T-TGCA-TGAATA-GATTGTTTTATGAC
129 ATTATTTTATTTTGAATAAGCTTGTATGAATTGAA-ACAATTGTTTTATGAC
* * * * * *
13176962 AAAACAAAAGGTCTTAACAATTTCATATAGATAATTATTCAAATCGAT-ATAATTATTTGAACTT
1 AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAG-TCATAACTATTTGAACTT
* *
13177026 GTTTAGTAAACATATTTATTTTTTAAATCTC-CTACCTATTAATTTTT-ATAATATTAATAAATT
65 GTTTAGTAAACAGATTTATTTTTTAAATATCTCT--C-ATTAATTTTTCA-AATATTAATAAATT
* * * * *
13177089 AGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAATAATTGCTTTATGAA
126 AGTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
* * * * * ** * *
13177143 AAAACAAAAGATCATAACTATTTGAAATAAATAATTTTTTAAGCAATCATAACTATTTGAACTCG
1 AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
* * * * * * ** *
13177208 ATTGGTAAACAGATTTA-TTTTTAAACTTTTTTACTTATGAATTTTTGGAAT-TATAATAAACTA
66 TTTAGTAAACAGATTTATTTTTTAAA--TATCT-CTCATTAATTTTTCAAATAT-TAATAAATTA
* * * ** * *
13177271 GTACTATTTTATTATGAATATGCTTGTATGAACAGAAATAATTGGTTTATGAC
127 GTATTATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
13177324 AAAACAAAAGGTCA
1 AAAACAAAAGGTCA
13177338 AAATATTTGA
Statistics
Matches: 997, Mismatches: 212, Indels: 108
0.76 0.16 0.08
Matches are distributed among these distances:
171 21 0.02
172 64 0.06
173 6 0.01
174 7 0.01
175 16 0.02
176 127 0.13
177 85 0.09
178 77 0.08
179 131 0.13
180 73 0.07
181 307 0.31
182 81 0.08
184 2 0.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (179 bp):
AAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG
TTTAGTAAACAGATTTATTTTTTAAATATCTCTCATTAATTTTTCAAATATTAATAAATTAGTAT
TATTTTATTTTGAATAAGCTTGTATGAATTGAAACAATTGTTTTATGAC
Found at i:13177226 original size:531 final size:537
Alignment explanation
Indices: 13175894--13177229 Score: 1508
Period size: 531 Copynumber: 2.5 Consensus size: 537
13175884 TGAATATACT
* * *
13175894 AAAACAAAAGGCCATAACAATTTTAAATGGATAATTGTTC-AATAGTCATAAGTATTTGAACTTG
1 AAAACAAAAGGTCATAACAATTTTAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTTG
* * *
13175958 TTTAGTAAACAGATTTATTTTTTCAAAACTCTTGCTTATTAATTTTT-TGAATGTTAATAAATTA
66 TTTAGTAAACAGATTTATTTTTTCAAATCTCTTACCTATTAATTTTTAT-AATGTTAATAAATTA
** * * * * *
13176022 GTATTATTTTATTCCGAATAAGCTTGTATGATTTGAAACAATT-ATTACAT-ATCTAAACTAAAG
130 GTATTATTTTATTTTGAATAAACTTGTATGAATTGAAATAATTGATT-TATGA-CTAAACAAAAG
* * * * *
13176085 GTCAGAACAATTTGAAATAGATAAATATTCTAATAATCTTAACTATTTAAACTAG-TTCAATAAA
193 ATCAGAACTATTTGAAATAGAT-AATTTTCTAATAATCTTAACTATTTGAACTAGATTCGATAAA
* * *
13176149 CACATTTA--TTTTTTAAATCTCTTATTAATTTTTGAAATGTTATTAAATTAGTATTATTTTTAT
257 CACATTTATTTTTTTTAAATCTCTTATTAATTTTCGAAATATTATTAAATTAGTATTATTTTGAT
** * *
13176212 CCAAATAAGCTTGTACGATCAGAAACAATTGTTTTATGAGAAAACACAAATCATAACTATTTGAG
322 CCAAATAAGCTTGTACGAAAAGAAACAATTGTTTTATGACAAAACACAAATCATAACGATTTGAG
* * * **
13176277 ATTGATATTTGTTCAAATATTCATAACTGTTTGAACTGGTTTGAAAATAACTTTAGTTTTTAAAT
387 ATAGATATTTGTTCAAATAGTCATAACTATTCAAACTGGTTTGAAAATAACTTTAGTTTTTAAAT
* * * * *
13176342 CTCTTGCTAATTAATTTTTGAAATATTAGTAAAGTAATATTATTTTATTTCAGATAAGTTTTTAT
452 CTCTTGC-AATTAATTGTTAAAATATTAATAAAGTAATATTAATTTATTTCAGATAAGTTTTCAT
13176407 GAATTGAAACAATTGTTTTATGAC
516 GAATT--AACAATTGTTTTATGAC
* ** * * *
13176431 AAAATAAAAGGTCATAATGATTTTAGATAGAAAATTGTTCAAATAGTCA-AATCTATTTAAACTT
1 AAAACAAAAGGTCATAACAATTTTAAATAGATAATTGTTCAAATAGTCATAAT-TATTTGAACTT
* *
13176495 GTTTAGTAAACAGATTTATTTTTTCAAATATCTTA-CTCATTAATTTTTCA-AATGTCAAT-AAT
65 GTTTAGTAAACAGATTTATTTTTTCAAATCTCTTACCT-ATTAATTTTT-ATAATGTTAATAAAT
* *
13176557 TAGTATTATTTTATTTTTAA-AAAGCTTGTATGAATTGAAATAATTGTTTTATGACTAAACAAAA
128 TAGTATTATTTTATTTTGAATAAA-CTTGTATGAATTGAAATAATTGATTTATGACTAAACAAAA
* * * * *
13176621 GATTAGAA-TGATTTGAAATAGATAATTGTTCTAATAGTTTTAACTATTTGAA-TTGATTCGACA
192 GATCAGAACT-ATTTGAAATAGATAATT-TTCTAATAATCTTAACTATTTGAACTAGATTCGATA
*
13176684 AACACATTTATTTTTTTTAAATCTCTTATTAATTTTCGGAATATTATTAAATTAGTATTATTTTG
255 AACACATTTATTTTTTTTAAATCTCTTATTAATTTTCGAAATATTATTAAATTAGTATTATTTTG
* * * * *
13176749 GTTCGAATAAGCTTGTATGAAAAGAAACAATTGTTTTATGACAAAATA-AAGA-CTATAACGATT
320 ATCCAAATAAGCTTGTACGAAAAGAAACAATTGTTTTATGACAAAACACAA-ATC-ATAACGATT
** *
13176812 TGAGATAGATGA-TTGTTCAAATAGTCATAACTATTCAAACTATTTTTGTAAATAGA-TTTAGTT
383 TGAGATAGAT-ATTTGTTCAAATAGTCATAACTATTCAAACT-GGTTTGAAAATA-ACTTTAGTT
* * *
13176875 TTTATATCTC-T-C-ATTAATTGTTAAAATATTAATAAA-TCAATGTTAATTTATTT-TGAATAA
445 TTTAAATCTCTTGCAATTAATTGTTAAAATATTAATAAAGT-AATATTAATTTATTTCAG-ATAA
*
13176935 -TTTTGCATGAA-T-A-GATTGTTTTATGAC
508 GTTTT-CATGAATTAACAATTGTTTTATGAC
* * * * *
13176962 AAAACAAAAGGTCTTAACAATTTCATATAGATAATTATTCAAATCGAT-ATAATTATTTGAACTT
1 AAAACAAAAGGTCATAACAATTTTAAATAGATAATTGTTCAAATAG-TCATAATTATTTGAACTT
* * *
13177026 GTTTAGTAAACATATTTATTTTTT-AAATCTCCTACCTATTAATTTTTATAATATTAATAAATTA
65 GTTTAGTAAACAGATTTATTTTTTCAAATCTCTTACCTATTAATTTTTATAATGTTAATAAATTA
* * **
13177090 GTATTATTTTATTTTGAATAAACTTGTATGAATAGAAATAATTGCTTTATGAAAAAACAAAAGAT
130 GTATTATTTTATTTTGAATAAACTTGTATGAATTGAAATAATTGATTTATGACTAAACAAAAGAT
* * * * * * *
13177155 CATAACTATTTGAAATAAATAATTTTTTAAGCAATCATAACTATTTGAACTCGATT-GGTAAACA
195 CAGAACTATTTGAAATAGATAATTTTCTAA-TAATCTTAACTATTTGAACTAGATTCGATAAACA
*
13177219 GATTTATTTTT
259 CATTTATTTTT
13177230 AAACTTTTTT
Statistics
Matches: 674, Mismatches: 95, Indels: 66
0.81 0.11 0.08
Matches are distributed among these distances:
529 1 0.00
530 30 0.04
531 196 0.29
532 14 0.02
535 7 0.01
536 50 0.07
537 141 0.21
538 75 0.11
539 133 0.20
540 26 0.04
541 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.42
Consensus pattern (537 bp):
AAAACAAAAGGTCATAACAATTTTAAATAGATAATTGTTCAAATAGTCATAATTATTTGAACTTG
TTTAGTAAACAGATTTATTTTTTCAAATCTCTTACCTATTAATTTTTATAATGTTAATAAATTAG
TATTATTTTATTTTGAATAAACTTGTATGAATTGAAATAATTGATTTATGACTAAACAAAAGATC
AGAACTATTTGAAATAGATAATTTTCTAATAATCTTAACTATTTGAACTAGATTCGATAAACACA
TTTATTTTTTTTAAATCTCTTATTAATTTTCGAAATATTATTAAATTAGTATTATTTTGATCCAA
ATAAGCTTGTACGAAAAGAAACAATTGTTTTATGACAAAACACAAATCATAACGATTTGAGATAG
ATATTTGTTCAAATAGTCATAACTATTCAAACTGGTTTGAAAATAACTTTAGTTTTTAAATCTCT
TGCAATTAATTGTTAAAATATTAATAAAGTAATATTAATTTATTTCAGATAAGTTTTCATGAATT
AACAATTGTTTTATGAC
Found at i:13177423 original size:144 final size:145
Alignment explanation
Indices: 13177218--13177493 Score: 373
Period size: 144 Copynumber: 1.9 Consensus size: 145
13177208 ATTGGTAAAC
*
13177218 AGATTTATTTTTAAACTTTTTTACTTATGAATTTTTGGAATTATAATAAACTAGTACTATTTTAT
1 AGATTTATTTTTAAAC-TTTTTACTTATGAATTTTTAGAATTATAATAAACTAGTACTATTTTAT
** * *
13177283 TATGAATATGCTTGTATGAACAGAAATAATTGGTTTATGACAAAACAAAAGGTCAA-AAT-ATTT
65 TACAAATAAGCTTGTATGAACAGAAACAATTGGTTTATGACAAAACAAAAGGT-AATAATGATTT
13177346 GAACATGTTCAAAAAAT
129 GAACATGTTCAAAAAAT
* * *
13177363 AGATTTATTTTTTAAA-TTTTTACTTATTAATTTTTAGAA-TATTAATAAATTTA-TATTATTTT
1 AGATTTA-TTTTTAAACTTTTTACTTATGAATTTTTAGAATTA-TAATAAA-CTAGTACTATTTT
* * *
13177425 ATTCCAAATAAGCTTGTATGAACAGGAACAATTGTTTTATGACAAAACAAAAGGTAATAATGATT
63 ATTACAAATAAGCTTGTATGAACAGAAACAATTGGTTTATGACAAAACAAAAGGTAATAATGATT
13177490 TGAA
128 TGAA
13177494 ATAGATAATT
Statistics
Matches: 115, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
143 4 0.03
144 87 0.76
145 16 0.14
146 8 0.07
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.42
Consensus pattern (145 bp):
AGATTTATTTTTAAACTTTTTACTTATGAATTTTTAGAATTATAATAAACTAGTACTATTTTATT
ACAAATAAGCTTGTATGAACAGAAACAATTGGTTTATGACAAAACAAAAGGTAATAATGATTTGA
ACATGTTCAAAAAAT
Found at i:13178017 original size:687 final size:677
Alignment explanation
Indices: 13176708--13178018 Score: 1441
Period size: 687 Copynumber: 1.9 Consensus size: 677
13176698 TTTTAAATCT
* * * *
13176708 CTTATTAATTTTCGGAATATTATTAAATTAGTATTATTTTGGTTCGAATAAGCTTGTATGAAAAG
1 CTTATTAATTTTCAGAATATTAATAAATTAGTATTATTTTGATTCAAATAAGCTTGTATGAAAAG
* * * *
13176773 AAACAATTGTTTTATGACAAAATAAAGACTATAACGATTTGAGATAGATGATTGTTCAAATAGTC
66 AAACAATTGTTTTATGACAAAAAAAAGACTATAACGATTTGAAATAGATAATTATTCAAATAGTC
* * *
13176838 ATAACTATTCAAACTATTTTTGTAAATAGATTTAGTTTTTATATCTCTCATTAATTGTTAAAATA
131 ATAACTATTCAAACTATGTTTGAAAATAGATTTAGTTTTTAAATCTCTCATTAATTGTTAAAATA
* * * *
13176903 TTAATAAATCAATGTTAATTTATTTTGAATAATTTTGCATGAATAGATTGTTTTATGACAAAACA
196 TCAATAAATCAATATTAATTTATTTTGAATAATTTTGAATGAATAAATTGTTTTATGACAAAACA
* * * * * *
13176968 AAAGGTCTTAACAATTTCATATAGATAATTATTCAAATCGATATAATTATTTGAACTTGTTTAGT
261 AAAGGTCTTAACAATTTCAAATAGATAATTACTCAAATAGATATAACTATTTGAACTTGATCAGT
* ** * * * *
13177033 AAACATATTTATTTTTTAAATCTCCTACCTATTAATTTTTATAATATTAATAAATTAGTATTATT
326 AAACATATCTATTTTAAAAATCTCCTACCTATTAATTGTCAAAATATTAATAAATTAATATTATT
* *** * * *
13177098 TTATTTTGAATAAACTTGTATGAATAGAAATAATTGCTTTATGAAAAAACAAAAGATCATAACTA
391 TTAATCCAAATAAACTTGTATGAAGAGAAACAATTGCTTTATGAAAAAACAAAAGATCATAACAA
** * *
13177163 TTTGAAATAAATAATTTTTTAAGCAATCATAACTATTTGAACTCGATTGGTAAACAGATTTATTT
456 TTTGAAATAAATAATTGCTCAAACAATCATAACTATTTGAACTCGATTGGTAAACAGATTTATTT
* * * * *
13177228 TTAAACTTTTTTACTTATGAATTTTTGGAATTATAATAAACTAGTACTATTTTATTATGAATATG
521 TTAAACTCTTTTACTTATGAATGTCTGAAATTATAATAAACTAGTACTATTTTATTATGAATAAG
*
13177293 CTTGTATGAACAGAAATAATTGGTTTATGACAAAACAAAAGGTCAAAATATTTGAACATGTTCAA
586 CTTGTATGAACAGAAAAAATTGGTTTATGACAAAACAAAAGGTCAAAATATTTGAACATGTTCAA
13177358 AAAATAGATTTATTTTTTAAATTTTTA
651 AAAATAGATTTATTTTTTAAATTTTTA
* *
13177385 CTTATTAATTTTTAGAATATTAATAAATTTA-TATTATTTT-ATTCCAAATAAGCTTGTATGAAC
1 CTTATTAATTTTCAGAATATTAATAAA-TTAGTATTATTTTGATT-CAAATAAGCTTGTATGAAA
* * *
13177448 AGGAACAATTGTTTTATGACAAAACAAAAG-GTAATAATGATTTGAAATAGATAATTATTCAAAT
64 AGAAACAATTGTTTTATGACAAAA-AAAAGACT-ATAACGATTTGAAATAGATAATTATTCAAAT
** * *
13177512 AGTCATAACTATTTGAACT-TGTTTGAAAAATAGTTTTCA-TTTTTAAAAACTCTTACTCATTAT
127 AGTCATAACTATTCAAACTATGTTTG-AAAATAGATTT-AGTTTTT--AAA-TC-T-CTCATTAA
* * * * *
13177575 TTTTTAGAATATCAATAAATTAGTATTATTTTATTTTGAATAAGTCTATATGAATTG-ATACAAT
185 TTGTTAAAATATCAATAAATCAATATTAATTTATTTTGAATAA-T-T-T-TGAA-TGAATA-AAT
* ** * ** * * *
13177639 TTTTTTATGATGAAACCAAAGGT-TATAATGATTTTAAATAGATAATTACTCAAATAGTTATGAC
244 TGTTTTATGACAAAACAAAAGGTCT-TAACAATTTCAAATAGATAATTACTCAAATAGATATAAC
** *
13177703 TATTTGAACTTGATCAGTAAACATATCTATTTTAAAAATCTTTTACTTATTAATTGTCAAAATAT
308 TATTTGAACTTGATCAGTAAACATATCTATTTTAAAAATCTCCTACCTATTAATTGTCAAAATAT
* * * *
13177768 TAA-AAATTAATATTATTTTAATCCAAATAAGCTTGTATGGAGA-AAAGCAATTGTTTTATGACA
373 TAATAAATTAATATTATTTTAATCCAAATAAACTTGTATGAAGAGAAA-CAATTGCTTTATGAAA
** * * *
13177831 AAACATATTG-TCATAACAATTTGAAATAAGA-AATTGCTCAAATAGTTATAACTATTTGAACT-
437 AAACA-AAAGATCATAACAATTTGAAATAA-ATAATTGCTCAAACAATCATAACTATTTGAACTC
* * * * *
13177893 TATTTGGTAAATAGATTTATTTTTTATA-TCTTTTACTTATTAGTAGTCT-AAA-TATTAATAAA
500 GA-TTGGTAAACAGATTTA-TTTTTAAACTCTTTTACTTATGAAT-GTCTGAAATTA-TAATAAA
* * * * * *
13177955 TTTGTA-TAATTTTATT-TGAAATAAGCTTGTTTGAATAGAAAAAATTGTTTTATGATAAAACAA
561 CTAGTACT-ATTTTATTATG-AATAAGCTTGTATGAACAGAAAAAATTGGTTTATGACAAAACAA
13178018 A
624 A
13178019 GAGTTATAGT
Statistics
Matches: 516, Mismatches: 91, Indels: 44
0.79 0.14 0.07
Matches are distributed among these distances:
676 2 0.00
677 79 0.15
678 65 0.13
679 1 0.00
680 2 0.00
681 2 0.00
682 1 0.00
683 43 0.08
684 1 0.00
685 1 0.00
686 10 0.02
687 187 0.36
688 122 0.24
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (677 bp):
CTTATTAATTTTCAGAATATTAATAAATTAGTATTATTTTGATTCAAATAAGCTTGTATGAAAAG
AAACAATTGTTTTATGACAAAAAAAAGACTATAACGATTTGAAATAGATAATTATTCAAATAGTC
ATAACTATTCAAACTATGTTTGAAAATAGATTTAGTTTTTAAATCTCTCATTAATTGTTAAAATA
TCAATAAATCAATATTAATTTATTTTGAATAATTTTGAATGAATAAATTGTTTTATGACAAAACA
AAAGGTCTTAACAATTTCAAATAGATAATTACTCAAATAGATATAACTATTTGAACTTGATCAGT
AAACATATCTATTTTAAAAATCTCCTACCTATTAATTGTCAAAATATTAATAAATTAATATTATT
TTAATCCAAATAAACTTGTATGAAGAGAAACAATTGCTTTATGAAAAAACAAAAGATCATAACAA
TTTGAAATAAATAATTGCTCAAACAATCATAACTATTTGAACTCGATTGGTAAACAGATTTATTT
TTAAACTCTTTTACTTATGAATGTCTGAAATTATAATAAACTAGTACTATTTTATTATGAATAAG
CTTGTATGAACAGAAAAAATTGGTTTATGACAAAACAAAAGGTCAAAATATTTGAACATGTTCAA
AAAATAGATTTATTTTTTAAATTTTTA
Found at i:13178070 original size:181 final size:178
Alignment explanation
Indices: 13177359--13181267 Score: 2563
Period size: 181 Copynumber: 21.7 Consensus size: 178
13177349 CATGTTCAAA
13177359 AAATAGATTTATTTTTTAAAT-TTTTACTTATTAATTTTTAGAATATTAATAAATTTA-TATTAT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTA-AATATTAATAAA-TTAGTATTAT
** * * *
13177422 TTTATTCCAAATAAGCTTGTATGAACAGGAACAATTGTTTTATGACAAAACAAAAGGTAATAATG
64 TTTATT-TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATG
* **
13177487 ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGAA
127 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * * *
13177539 AAATAGTTTTCATTTTTAAAAACTCTTACTCATTATTTTTTAGAATATCAATAAATTAGTATTAT
1 AAATAGATTT-ATTTTTTAAATCTTTTACTTATTAATTTTTA-AATATTAATAAATTAGTATTAT
* * * * * * * *
13177604 TTTATTTTGAATAAG-TCTATATGAATTGATACAATTTTTTTATGATGAAACCAAAGGTTATAAT
64 TTTA-TTTGAATAAGCT-TGTATGAATAGAAACAATTGTTTTATGA-CAAAACAAAAGTCATAAT
* ** * * * **
13177668 GATTTTAAATAGATAATTACTCAAATAGTTATGACTATTTGAACTTGATCAGT
126 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * ** ** *
13177721 AAACATATCTATTTTAAAAATCTTTTACTTATTAATTGTCAAAATATTAA-AAATTAATATTATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATT-TTTAAATATTAATAAATTAGTATTATT
*** * * ** **
13177785 TTAATCCAAATAAGCTTGTATGGAGA-AAAGCAATTGTTTTATGACAAAACATATTGTCATAACA
65 TT-ATTTGAATAAGCTTGTATGAATAGAAA-CAATTGTTTTATGACAAAACA-AAAGTCATAATG
* * *
13177849 ATTTGAAATAAGA-AATTGCTCAAATAGTTATAACTATTTGAACTTATTTGGT
127 ATTTGAAAT-AGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * *
13177901 AAATAGATTTATTTTTTATATCTTTTACTTATTAGTAGTCTAAATATTAATAAATTTGTATAATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAAT-TTTTAAATATTAATAAATTAGTATTATT
* * * * *
13177966 TTATTTGAAATAAGCTTGTTTGAATAGAAAAAATTGTTTTATGATAAAACAAAGAGTTATAGTGA
65 TTATTTG-AATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAA-AGTCATAATGA
* *
13178031 TTTGAAATAGATAATTGTTTAAATAGTCATAATTATTTGAACTTGTTTGGT
128 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * *
13178082 AAACAGATTCATTTTTTAAATCTCTTACTTA-TAATTTTAAGAATATTAATAAATTAG-ATTTAT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTA-AATATTAATAAATTAGTA-TTAT
* ** * * * *
13178145 GTTGT-TTTGAATAAACTT-TACAAACAGAAACAATTGCTTTGTGATAAAACAAAATGTCATAAT
64 -TT-TATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAAT
* * * *
13178208 GATTTGAAATAGATAATTGTTCAAACAGTCATAACTATTTGCACTAGTTAGGCT
126 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGG-T
* * ** * ** *
13178262 AACA-AG-TTCATTTTTAAAATCCATTACTTCTTAATTTTTAAAATATTAATAAATTAACATTAC
1 AA-ATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTAT
* * * *
13178325 TTTATTTTGAATAAGAC-TATATGAATAGAAACAATTATTTTATGACAAAACAAATGGTCATAAC
64 TTTA-TTTGAATAAG-CTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAA-AGTCATAAT
* * * * * * *
13178389 GATTTGAAATAAAGAATTGTTCAAATAGTTATAACTAATTGAACTGGTTTAGC
126 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * * *
13178442 AAACAAATTTATTTTTTAAATCTCTTACTTCTTAATTTTCAAAATATTAATAATTTAATATTATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTT-TAAATATTAATAAATTAGTATTATT
* * * * * * * * *
13178507 TTATTCTAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAAGAAAAAAGGTCATAAC
65 TTATT-TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGAC-AAA-ACAAAA-GTCATAAT
* * * * * * *
13178572 GAGTTAAAATAGATAATTATTCAAATAGTCATAATTATTTAAAC-TGGTT--C
126 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * * *
13178622 AACAAACA-TAATTTTTTAAAATCTTTTACATATTAATTTTGAAAATATTAATAAATTTGTTTTA
1 AA-ATAGATTTATTTTTT-AAATCTTTTACTTATTAATTTT-TAAATATTAATAAATTAGTATTA
* * * * *
13178686 TTTTATTTCGAATAAG-TTACTAAGAACTA-AATA-AATTATTTTACGACAAAATAAAAAGGTCA
63 TTTTATTT-GAATAAGCTT-GTATGAA-TAGAA-ACAATTGTTTTATGACAAAA-CAAAA-GTCA
** * * * * * ****
13178748 TAACAATTTGAAATAAAAAATTTGTTCATATAGCCTTAACTATTTGAA-TTGATTCAAC
122 TAATGATTTGAAATAGATAA-TTGTTCAAATAGTCATAACTATTTGAACTTG-TTTGGT
* * * * * * *
13178806 AAATAAATTTATTTTTTAAATCTCTTAGTTATTAATTTTTAGAATATTATTACACTAGTATAATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTA-AATATTAATAAATTAGTATTATT
* * * * * * **
13178871 TTTTTTGAATAAACTTGTATGAATAGAAATAATTATTTTATGACATAACAAAAGGTTATAACAAT
65 TTATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAA-GTCATAATGAT
* * ***
13178936 TTGAAAT-GCGTAATTGTTCAAATAGTCATAACTATTTGAACTAGTTCAAT
129 TTGAAATAG-ATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * *
13178986 AAACAAATTTATTTTTTCAATCTCTTGCTTATTAATTTTTGAAATATTAGTAAATTAG-ATTTAT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAATTAGTA-TTAT
* * *
13179050 TTTATTCCGAATAGGCTTGTATG-ATA-AACACAATTGTTTTATGACAAAACAAAAGTTCATAAC
64 TTTATT-TGAATAAGCTTGTATGAATAGAA-ACAATTGTTTTATGACAAAACAAAAG-TCATAAT
* * * ** * **** *
13179113 AATTTGAAATAGATAATTGTTTAAATGGTTGTAATTATTTGAACTAAAATGAT
126 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * *
13179166 AAACTA-ATTTTATTTTTTTAAATCTCTAACTAATTACTTTTTGAAATATTAAT-AAGTAATATT
1 AAA-TAGA-TTTA-TTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAATTAGTATT
* * * * * * * *
13179229 ATTTTATTTCAAATAAGCTTCTATGCACT-GTAACAATTGCTTTATAATAAAATAAAAAGTCATA
62 ATTTTATTT-GAATAAGCTTGTATG-AATAGAAACAATTGTTTTATGACAAAA-CAAAAGTCATA
* * * * *
13179293 ATGATTTTAAATATATAATTATTCAAATAGTCATAACTATTTGAACTTGCTTGAT
124 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * ** * *
13179348 AAACTA-ATTTATTTTTTTTAAT-TTCTTGCTTATTAATCTCCTAAATGTTAACAAATTAGTATT
1 AAA-TAGATTTA-TTTTTTAAATCTT-TTACTTATTAAT-TTTTAAATATTAATAAATTAGTATT
* * * * *
13179411 ATTTTATTTTGAAT-AGACATGTATGAGCT-GAAACAATTATTTTATGACTAAACAAAAAGTCAA
62 ATTTTA-TTTGAATAAG-CTTGTATGA-ATAGAAACAATTGTTTTATGACAAAAC-AAAAGTCAT
* * * * * ** *
13179474 AATGATTTGAAAAAATATAATTGTTCTAATAGTCTTAATTATTTGAACAAGTTTGGC
123 AATGATTTG-AAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * *
13179531 AAACAAATTTATTTTTTGAATC-----CTTATTAATTTTTGAAATAGTAATAAATTGGTATTATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATT
** * *
13179591 TTATTCTGAATAATTTTGTATGAATACTAGTTATTTTGAATAATTGGTATTATTTTATGATAAAA
65 TTATT-TGAATAAGCTTGTATG-A-A-TAG--A-----AACAATT-G-----TTTTATGACAAAA
* * * * * * * * **
13179656 CAAAATGTCATAATGATTTGAGATAGATAATAGCTCAAATGGACATGATTATTTGATCTTGTTCA
113 CAAAA-GTCATAATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTG
13179721 GT
177 GT
* ***
13179723 AAATAAATTTATTTTTTAAATCTCCAACTTATTAATTTTTAGAATATTAATAAATTAGTATTATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTA-AATATTAATAAATTAGTATTATT
* * * * * *
13179788 TTTTTCTGAATAAACTTTTATGAATAGAAACAATTGTTTTATGGCTAAAGAAAAGATCATAATGA
65 TTATT-TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAG-TCATAATGA
* * * * *
13179853 TTAGAAATAAATATTTGTTGAAATAGTCATAACTATTTGAACTTGTTTGGC
128 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * *
13179904 AAATAGAATTATTTTTTAAATCTTTTACTTATTAATTTTTGGATTTTTAATAAATTAGTATTATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAATTAGTATTATT
* * * * **
13179969 TTATTTTGAATAAGCTTGTATGAACA-AAAGCAATTGATTTATCACAAAACAAATGGTCATAACA
65 TTA-TTTGAATAAGCTTGTATGAATAGAAA-CAATTGTTTTATGACAAAACAAA-AGTCATAATG
* * * * * **
13180033 ATTTAAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACGTGTTCAGAA
127 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTT-TGGT
* * * * *
13180086 AAATAAATTTATTATTTAAAT-TATTATTTATTAATTTTTGAAATATTAATAAATTTA-TGTTAT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAA-TTAGTATTAT
** * * *
13180149 TTTATTCAAAACAAGCTT-TCATGAATAG-ATCGAATTGTTTTCTGACAAAACAAAAAGTCATAA
64 TTTATT-TGAATAAGCTTGT-ATGAATAGAAAC-AATTGTTTTATGACAAAAC-AAAAGTCATAA
* * * ***
13180212 TG-TGTTGAAATAAATAAGTGTTCAGATAGTCATAACTATTTGAA-TT-TTTTCA
125 TGAT-TTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * *
13180264 ATAATTGATTCATTTTTTTTAATTCTCTTACTCATTAATTTTTGAAATATTAATAAATTAGTATT
1 A-AATAGATT--TATTTTTTAAATCTTTTACTTATTAATTTTT-AAATATTAATAAATTAGTATT
* ** * * *
13180329 ATTTTATTTCAAATAAATTTATAT-TATATGAAACAATTGTTTTATTACAAAACAAAAGGTCATA
62 ATTTTATTT-GAATAAGCTTGTATGAATA-GAAACAATTGTTTTATGACAAAACAAAA-GTCATA
* * ** * * *
13180393 ATTATTTGAAATAGTTAATCATTCAAATAGTCATGACTATTTGAATTTGTTCGGT
124 ATGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * *
13180448 GAAAT--ATTTATTTTTTAAATATTTTACTTATTAATTGATGAAATATTAATAAATTAATATTAT
1 -AAATAGATTTATTTTTTAAATCTTTTACTTATTAATT-TTTAAATATTAATAAATTAGTATTAT
* *
13180511 TTTAATTCGAATAAGCTTCT-TGAATAGAAACAATTGTTTTATGACAAAAC-AAA---A-AAT--
64 TTT-ATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGTCATAATGA
* * * * * *
13180568 TAT-AACA-A-TTTATTGTTCAAATAATCATAA-TGATTTAAACTTGTTTAGT
128 TTTGAA-ATAGATAATTGTTCAAATAGTCATAACT-ATTTGAACTTGTTTGGT
* * * * *
13180617 AAACAGATTTATTTTTAAAATTTTTTACTTATTAATTGTCTT-AATATTAATAAATTTGTATTGT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATT-T-TTAAATATTAATAAATTAGTATTAT
** * * * * * * *
13180681 TTTATTCAAAATAAACTTGTATAAACA-AAAGAAATCT-TTTTATGACAAAATAAAAGATTATAG
64 TTTATT-TGAATAAGCTTGTATGAATAGAAA-CAAT-TGTTTTATGACAAAACAAAAG-TCATAA
* * ** * *
13180744 CGATTTCAAATAGATAATTTGTTCAAATAGTCATATTTATTTAAACTTGTTTGAT
125 TGATTTGAAATAGATAA-TTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * ** * *
13180799 AAACAGATTCATTTTTTAAATCTTTTAATTATTAACTTTTGGAATGTTAATAACTTAGTATTATT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTTTTAAATATTAATAAATTAGTATTATT
* * *
13180864 TTATTTTGAATAAGCTTATAT-AACCTA-AAATAATT-TTTGATGACAAAACAAAAGTCAT-ATC
65 TTA-TTTGAATAAGCTTGTATGAA--TAGAAACAATTGTTTTATGACAAAACAAAAGTCATAAT-
* * * * * * * * *
13180925 AATTTGAAATAAATAATTATTCAAAAAGTCATGAGTATTTGATCTAGTTAGGT
126 GATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * * ** *
13180978 AAACATATTAACTTTTTT-AATTTTTTAC--A-T--TGTCAAAATATTAATAAAATAGTATTATT
1 AAATAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTAAATATTAATAAATTAGTATTATT
* ** * * * * **
13181037 TTAATTTGAATAAGCTTGTATGAATAGAAACTATTGTTGAATAATAGAACAAAAAGTAATAACAA
65 TT-ATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAAC-AAAAGTCATAATGA
* * * * *
13181102 TTTGTAATAAATAATTGCTCAAATAGTCATAACTATTTGAACTGGTTTGAT
128 TTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
* * * * *
13181153 AAAAAGCTTTA-TTTTTAAATCTCTTA-TTATT--TTTTGAAATATTAATAGATTAGTATTATTT
1 AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAAATATTAATAAATTAGTATTATTT
** * * * * * * *
13181214 TATTCCAAACAAACTTATATGAATAAAAACATTTGTTTTATGAGAGAACAAAAG
66 TATT-TGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAG
13181268 CATTTGTTTT
Statistics
Matches: 2930, Mismatches: 618, Indels: 367
0.75 0.16 0.09
Matches are distributed among these distances:
168 4 0.00
169 33 0.01
170 67 0.02
171 24 0.01
172 6 0.00
173 54 0.02
174 20 0.01
175 67 0.02
176 66 0.02
177 45 0.02
178 9 0.00
179 198 0.07
180 518 0.18
181 896 0.31
182 582 0.20
183 172 0.06
184 16 0.01
185 1 0.00
186 1 0.00
187 12 0.00
192 56 0.02
193 25 0.01
194 3 0.00
195 1 0.00
196 2 0.00
197 52 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
AAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAAATATTAATAAATTAGTATTATTT
TATTTGAATAAGCTTGTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGTCATAATGATTT
GAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGT
Found at i:13178599 original size:16 final size:17
Alignment explanation
Indices: 13178578--13178610 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
13178568 TAACGAGTTA
13178578 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
13178594 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
13178611 TAAACTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:13179283 original size:544 final size:543
Alignment explanation
Indices: 13177365--13181256 Score: 1307
Period size: 544 Copynumber: 7.2 Consensus size: 543
13177355 CAAAAAATAG
* *
13177365 ATTTATTTTTTAAAT-TTTTACTTATTAATTTTT-AGAATATTAATAAATT-TATATTATTTTAT
1 ATTTATTTTTTAAATCTCTT-CTTATTAATTTTTGA-AATATTAATAAATTAGATATTATTTTAT
** * * ** * * ** *
13177427 TCCAAATAAGCTTGTATGAACAGGAACAATTGTTTTATGAC-AAA-ACAAAAGGTAATAATGATT
64 TCTGAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAAGAAAAAAGGTCATAACAAGT
* * * ** * * **
13177490 TGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTTGAA-AAATAGTTTTCATTT
129 TAAAATAGATAATTATTCAAATAGTCATAATTATTTAAAC-TGGATAAACAAACA-TAAT--TTT
* * * * * * * * **
13177554 TTAAAAACTCTTAC-TCATTATTTTTTAGAATATCAATAAATTAGTATTATTTTATTTTGAATAA
190 TTAAAATCTCTAACAT-ATTAATTTTGAAAATATTAATAAAGTAATATTATTTTATTTCAAATAA
* ** ** ** ** ** * * ** * *
13177618 GTCTA-TATGAA-TTGATACAATTTTTTTATGATGAAACCAAAGGTTATAATGATTTTAAATAGA
254 GT-TACTAAGAACTAAATA-AATTACTTTACAACAAAATAAAAAGTCATAACAATTTGAAATAAA
* * ** * * **
13177681 TAATTACTCAAATAGTTATGACTATTTGAACTTGA-TCAGTAAACAT-ATCTA-TTTTAAAAATC
317 AAATTATTCAAATAGCCATAACTATTTGAACTTGATTCA-TAAA-ATAATTTATTTTTTTAAATC
* * * * * * * * *** *
13177743 TTTTACTTATTAAT-TGTCAAAATATTAA-AAATTAATATTATTTTAATCCAAATAAGCTTGTAT
380 TCTTGCTTATTAATCT-CCTAAATATTAACAAACTAGTATAATTTTATTTTGAATAAAC-TGTAT
* * * * * ** * * *
13177806 GGAGA-AAAGCAATTGTTTTATGACAAAACATATTGTCATAACAATTTGAAATAAGAAATTGCTC
443 GAATAGAAA-CAATTATTTTATGACATAACAAAAGGTCATAACGATTTGAAATAAGTAATTGTTC
* * * * *
13177870 AAATAGTTATAACTATTTGAACTTA-TTTGGTAAATAG
507 AAATAGTCATAACTATTTGAAC-TAGTTTAGCAAACAA
* * * * * * *
13177907 ATTTATTTTTTATATCTTTTACTTATTAGTAGTCT-AAATATTAATAAATTTG-TATAATTTTAT
1 ATTTATTTTTTAAATCTCTT-CTTATTAAT-TTTTGAAATATTAATAAATTAGATATTATTTTAT
* * * * * * * * ***
13177970 T-TGAAATAAGCTTGTTTGAATAGAAAA-AATTGTTTTATGATAAAA-CAAAGA-GTTATAGTGA
64 TCTG-AATAAACTTATATGAACA-AAAACAATTGTTTTATGACAAAAGAAAAAAGGTCATAACAA
* * * * * * * * *
13178031 TTTGAAATAGATAATTGTTTAAATAGTCATAATTATTTGAACTTGTTTGGTAAACAGA-TTCATT
127 GTTAAAATAGATAATTATTCAAATAGTCATAATTATTTAAAC-TG---GATAAACAAACATAATT
* * * * * **
13178095 TTTT-AAATCTCTTACTTA-TAATTTT-AAGAATATTAATAAATTAGAT-TTATGTTGTTTTGAA
188 TTTTAAAATCTCTAACATATTAATTTTGAA-AATATTAATAAAGTA-ATATTATTTTATTTCAAA
* * *** * * * **
13178156 TAAACTT--TACA-AAC-AGAA-ACAATTGCTTTGTGATAAAACAAAATGTCATAATGATTTGAA
251 T-AAGTTACTA-AGAACTA-AATA-AATTACTTTACAACAAAATAAAAAGTCATAACAATTTGAA
* * * * * * * * * *
13178216 ATAGATAATTGTTCAAACAGTCATAACTATTTGCACTAG-TT-AGGCTAACA-AGTTCA-TTTTT
312 ATAAAAAATTATTCAAATAGCCATAACTATTTGAACTTGATTCA---TAAAATAATTTATTTTTT
* * * ** * * ** * *
13178277 AAAATC-CATTACTTCTTAAT-TTTTAAAATATTAATAAATTAACATTACTTTATTTTGAATAAG
374 TAAATCTC-TTGCTTATTAATCTCCT-AAATATTAACAAACTAGTATAATTTTATTTTGAATAA-
* * *
13178340 ACTATATGAATAGAAACAATTATTTTATGACAAAACAAATGGTCATAACGATTTGAAATAAAG-A
436 ACTGTATGAATAGAAACAATTATTTTATGACATAACAAAAGGTCATAACGATTTGAAAT-AAGTA
* * *
13178404 ATTGTTCAAATAGTTATAACTAATTGAACTGGTTTAGCAAACAA
500 ATTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGCAAACAA
* ** *
13178448 ATTTATTTTTTAAATCTCTTACTTCTTAATTTTCAAAATATTAATAATTTA-ATATTATTTTATT
1 ATTTATTTTTTAAATCTCTT-CTTATTAATTTTTGAAATATTAATAAATTAGATATTATTTTATT
* * * *
13178512 CTAAACAAACTTATATGAACAAAAACATTTGTTTTATGACAAAAGAAAAAAGGTCATAACGAGTT
65 CTGAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAAGAAAAAAGGTCATAACAAGTT
* *
13178577 AAAATAGATAATTATTCAAATAGTCATAATTATTTAAACTGGTTCAACAAACATAATTTTTTAAA
130 AAAATAGATAATTATTCAAATAGTCATAATTATTTAAACTGGATAAACAAACATAATTTTTTAAA
* * * ** * *
13178642 ATCTTTTACATATTAATTTTGAAAATATTAATAAATTTGTTTTATTTTATTTCGAATAAGTTACT
195 ATCTCTAACATATTAATTTTGAAAATATTAATAAAGTAATATTATTTTATTTCAAATAAGTTACT
* * *
13178707 AAGAACTAAATAAATTATTTTACGACAAAATAAAAAGGTCATAACAATTTGAAATAAAAAATTTG
260 AAGAACTAAATAAATTACTTTACAACAAAATAAAAA-GTCATAACAATTTGAAATAAAAAA-TTA
* *
13178772 TTCATATAGCCTTAACTATTTGAA-TTGATTCA-ACAAATAAATTTA-TTTTTTAAATCTCTTAG
323 TTCAAATAGCCATAACTATTTGAACTTGATTCATA-AAAT-AATTTATTTTTTTAAATCTCTT-G
** ** *
13178834 -TTATTAAT-TTTTAGAATATTATTACACTAGTATAATTTT-TTTTGAATAAACTTGTATGAATA
385 CTTATTAATCTCCTA-AATATTAACAAACTAGTATAATTTTATTTTGAATAAAC-TGTATGAATA
* * * **
13178896 GAAATAATTATTTTATGACATAACAAAAGGTTATAACAATTTGAAATGCGTAATTGTTCAAATAG
448 GAAACAATTATTTTATGACATAACAAAAGGTCATAACGATTTGAAATAAGTAATTGTTCAAATAG
* **
13178961 TCATAACTATTTGAACTAGTTCAATAAACAA
513 TCATAACTATTTGAACTAGTTTAGCAAACAA
* *
13178992 ATTTATTTTTTCAATCTCTTGCTTATTAATTTTTGAAATATTAGTAAATTAGAT-TTATTTTATT
1 ATTTATTTTTTAAATCTCTT-CTTATTAATTTTTGAAATATTAATAAATTAGATATTATTTTATT
* ** * * * * * *
13179056 CCGAATAGGCTTGTATG-ATAAACACAATTGTTTTATGAC-AAA-ACAAAAGTTCATAACAATTT
65 CTGAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAAGAAAAAAGGTCATAACAAGTT
* * * * ** * * * ** *
13179118 GAAATAGATAATTGTTTAAATGGTTGTAATTATTTGAACTAAAATGATAAACTAATTTTATTTTT
130 AAAATAGATAATTATTCAAATAGTCATAATTATTTAAACT----GGATAAACAAACATAATTTTT
* *
13179183 TTAAATCTCTAAC-TAATTACTTTTTG-AAATATTAAT-AAGTAATATTATTTTATTTCAAATAA
191 TAAAATCTCTAACAT-ATTA-ATTTTGAAAATATTAATAAAGTAATATTATTTTATTTCAAATAA
* * * * * * * ** * *
13179245 GCTT-CTATGCACTGTAA-CAATTGCTTTATAATAAAATAAAAAGTCATAATGATTTTAAATATA
254 G-TTACTAAGAACT-AAATAAATTACTTTACAACAAAATAAAAAGTCATAACAATTTGAAATAAA
* * * * * * *
13179308 TAATTATTCAAATAGTCATAACTATTTGAACTTGCTTGATAAACTAATTTATTTTTTTTAATTTC
317 AAATTATTCAAATAGCCATAACTATTTGAACTTGATTCATAAAATAATTTATTTTTTTAAATCTC
* * * *
13179373 TTGCTTATTAATCTCCTAAATGTTAACAAATTAGTATTATTTTATTTTGAATAGACATGTATGAG
382 TTGCTTATTAATCTCCTAAATATTAACAAACTAGTATAATTTTATTTTGAATAAAC-TGTATGA-
* * * * * * *
13179438 CT-GAAACAATTATTTTATGAC-TAAACAAAAAGTCAAAATGATTTGAAAAAATATAATTGTTCT
445 ATAGAAACAATTATTTTATGACAT-AACAAAAGGTCATAACGATTTGAAATAA-GTAATTGTTCA
* * * *
13179501 AATAGTCTTAATTATTTGAACAAGTTTGGCAAACAA
508 AATAGTCATAACTATTTGAACTAGTTTAGCAAACAA
* * *
13179537 ATTTATTTTTTGAA--TC--CTTATTAATTTTTGAAATAGTAATAAATT-GGTATTATTTTATTC
1 ATTTATTTTTTAAATCTCTTCTTATTAATTTTTGAAATATTAATAAATTAGATATTATTTTATTC
** * * * * *
13179597 TGAATAATTTTGTATGAATACTAGTTATTTTGAATAATTGGTATTATTTTATGA-TAAA-ACAAA
66 TGAATAAACTTATATG-A-AC-A---A----AAACAATT-G-----TTTTATGACAAAAGAAAAA
* ** * * * * * * * * * *
13179660 ATGTCATAATGATTTGAGATAGATAA-TAGCTCAAATGGACATGATTATTTGATCTTGTTCAGTA
115 AGGTCATAACAAGTTAAAATAGATAATTA-TTCAAATAGTCATAATTATTTAAAC-TG--GA-TA
* * * * * * * * *
13179724 AATAAA-TTTATTTTTT-AAATCTCCAACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
175 AACAAACATAATTTTTTAAAATCTCTAACATATTAATTTTGAAAATATTAATAAAGTAATATTAT
* * * * ** *** * *
13179787 TTT-TTTCTGAATAAACTT-TTATGAA-TAGAA-ACAATTGTTTTATGGCTAAA-GAAAAGATCA
240 TTTATTTC-AAAT-AAGTTACTAAGAACTA-AATA-AATTACTTTACAACAAAATAAAAAG-TCA
** * * * * * * * * *
13179847 TAATGATTAGAAATAAATATTTGTTGAAATAGTCATAACTATTTGAACTTGTTTGGCA-AATAGA
300 TAACAATTTGAAATAAAAAATTATTCAAATAGCCATAACTATTTGAACTTGATT--CATAAAATA
* * ** * * * * * *
13179911 A-TTA-TTTTTTAAATCTTTTACTTATTAAT-TTTTGGATTTTTAATAAATTAGTATTATTTTAT
363 ATTTATTTTTTTAAATCTCTTGCTTATTAATCTCCT-AAATATTAACAAACTAGTATAATTTTAT
* * * * * *
13179973 TTTGAATAAGCTTGTATGAACA-AAAGCAATTGA-TTTATCACAAAACAAATGGTCATAACAATT
427 TTTGAATAAAC-TGTATGAATAGAAA-CAATT-ATTTTATGACATAACAAAAGGTCATAACGATT
* * * * * *
13180036 TAAAATAAATAATTGTTCAAATAGTCATAACTATTTAAACGT-GTTCAGAAAAATAA
489 TGAAATAAGTAATTGTTCAAATAGTCATAACTATTTGAAC-TAGTTTAG-CAAACAA
* * * * *
13180092 ATTTATTATTTAAAT-TATTATTTATTAATTTTTGAAATATTAATAAATT-TATGTTATTTTATT
1 ATTTATTTTTTAAATCTCTT-CTTATTAATTTTTGAAATATTAATAAATTAGATATTATTTTATT
** * * * * * * * ***
13180155 CAAAACAAGCTT-TCATGAA-TAGATCGAATTGTTTTCTGACAAAA-CAAAAA-GTCATAATGTG
65 CTGAATAAACTTAT-ATGAACAAAAAC-AATTGTTTTATGACAAAAGAAAAAAGGTCATAACAAG
* * * * * * * * *** * * ** *
13180216 TTGAAATAAATAAGTGTTCAGATAGTCATAACTATTTGAATTTTTTCAATAATTGATTCATTTTT
128 TTAAAATAGATAATTATTCAAATAGTCATAATTATTTAAACTGGATAAACAA-ACA-T-AATTTT
* * * * *
13180281 TTTAATTCTCTTAC-TCATTAATTTTTG-AAATATTAATAAATTAGTATTATTTTATTTCAAATA
190 TTAAAATCTCTAACAT-ATTAA-TTTTGAAAATATTAATAAAGTAATATTATTTTATTTCAAAT-
* ** * ** ** * * **
13180344 AATTTA-TATTATA-TGAAA-CAATTGTTTTATTACAAAACAAAAGGTCATAATTATTTGAAATA
252 AAGTTACTAAGA-ACT-AAATAAATTACTTTACAACAAAATAAAAAGTCATAACAATTTGAAATA
*** * * * * * *
13180406 GTTAATCATTCAAATAGTCATGACTATTTGAATTTG-TTCGGTGAAAT-ATTTA-TTTTTTAAAT
315 AAAAATTATTCAAATAGCCATAACTATTTGAACTTGATTC-ATAAAATAATTTATTTTTTTAAAT
* * * ** * * * * * * * *
13180468 ATTTTACTTATTAAT-TGATGAAATATTAATAAATTAATATTATTTTAATTCGAATAAGCT-TCT
379 CTCTTGCTTATTAATCTCCT-AAATATTAACAAACTAGTATAATTTTATTTTGAATAAACTGT-A
* * ** * *
13180531 TGAATAGAAACAATTGTTTTATGACAAAACAAAAAATTATAAC-------AAT---TTATTGTTC
442 TGAATAGAAACAATTATTTTATGACATAACAAAAGGTCATAACGATTTGAAATAAGTAATTGTTC
* * * * *
13180586 AAATAATCATAA-TGATTTAAACTTGTTTAGTAAACAG
507 AAATAGTCATAACT-ATTTGAACTAGTTTAGCAAACAA
* * * * *
13180623 ATTTATTTTTAAAATTTTTTACTTATTAATTGTCTT--AATATTAATAAATTTG-TATTGTTTTA
1 ATTTATTTTTTAAATCTCTT-CTTATTAATT-T-TTGAAATATTAATAAATTAGATATTATTTTA
** * * * * * * *
13180685 TTCAAAATAAACTTGTATAAACAAAAGA-AATCT-TTTTATGAC-AAA-ATAAAAGATTATAGCG
63 TTCTGAATAAACTTATATGAACAAAA-ACAAT-TGTTTTATGACAAAAGAAAAAAGGTCATAACA
* * * * * * *
13180746 ATTTCAAATAGATAATTTGTTCAAATAGTCATATTTATTTAAACTTGTTTGATAAACAGA-TTCA
126 AGTTAAAATAGATAA-TTATTCAAATAGTCATAATTATTTAAAC-TG---GATAAACAAACATAA
* * * * ** * **
13180810 TTTTTT-AAATCTTTTAA-TTATTAACTTTTG-GAATGTTAATAACTTAGTATTATTTTATTTTG
186 TTTTTTAAAATC-TCTAACATATTAA-TTTTGAAAATATTAATAAAGTAATATTATTTTATTTCA
* ** * *
13180872 AATAAGCTTA-TATA-ACCTAAA-ATAATT--TTTGATGACAAAA-CAAAAGTCATATCAATTTG
249 AATAAG-TTACTA-AGAACTAAATA-AATTACTTT-ACAACAAAATAAAAAGTCATAACAATTTG
* * * * * * * * *
13180931 AAATAAATAATTATTCAAAAAGTCATGAGTATTTGATCTAG-TT-AGGTAAACAT-ATTAACTTT
310 AAATAAAAAATTATTCAAATAGCCATAACTATTTGAACTTGATTCA--TAAA-ATAATTTATTTT
* * * * * * * * *
13180993 TTT-AAT-T-TT--TTA-CATTGT-CAAAATATTAATAAAATAGTATTATTTTAATTTGAATAAG
372 TTTAAATCTCTTGCTTATTAATCTCCTAAATATTAACAAACTAGTATAATTTTATTTTGAATAAA
* * ** * * * * * * * *
13181051 CTTGTATGAATAGAAACTATTGTTGAATAATAGAACAAAAAGTAATAACAATTTGTAATAAATAA
437 C-TGTATGAATAGAAACAATTATTTTATGACATAACAAAAGGTCATAACGATTTGAAATAAGTAA
* *
13181116 TTGCTCAAATAGTCATAACTATTTGAACTGGTTT-G-ATAA-AA
501 TTGTTCAAATAGTCATAACTATTTGAACTAGTTTAGCA-AACAA
* *
13181157 AGCTTTA-TTTTTAAA--TC-TCTTATTATTTTTTGAAATATTAATAGATTAG-TATTATTTTAT
1 A--TTTATTTTTTAAATCTCTTCTTATTAATTTTTGAAATATTAATAAATTAGATATTATTTTAT
** * * *
13181217 TCCAAACAAACTTATATGAATAAAAACATTTGTTTTATGA
64 TCTGAATAAACTTATATGAACAAAAACAATTGTTTTATGA
13181257 GAGAACAAAA
Statistics
Matches: 2609, Mismatches: 552, Indels: 389
0.73 0.16 0.11
Matches are distributed among these distances:
525 36 0.01
526 38 0.01
527 5 0.00
529 4 0.00
530 59 0.02
531 111 0.04
532 172 0.07
533 41 0.02
534 7 0.00
535 13 0.00
536 34 0.01
537 5 0.00
539 17 0.01
540 170 0.07
541 290 0.11
542 147 0.06
543 410 0.16
544 428 0.16
545 183 0.07
546 11 0.00
547 3 0.00
548 3 0.00
549 4 0.00
551 5 0.00
552 2 0.00
554 41 0.02
555 146 0.06
556 104 0.04
557 68 0.03
558 4 0.00
559 48 0.02
ACGTcount: A:0.40, C:0.08, G:0.09, T:0.42
Consensus pattern (543 bp):
ATTTATTTTTTAAATCTCTTCTTATTAATTTTTGAAATATTAATAAATTAGATATTATTTTATTC
TGAATAAACTTATATGAACAAAAACAATTGTTTTATGACAAAAGAAAAAAGGTCATAACAAGTTA
AAATAGATAATTATTCAAATAGTCATAATTATTTAAACTGGATAAACAAACATAATTTTTTAAAA
TCTCTAACATATTAATTTTGAAAATATTAATAAAGTAATATTATTTTATTTCAAATAAGTTACTA
AGAACTAAATAAATTACTTTACAACAAAATAAAAAGTCATAACAATTTGAAATAAAAAATTATTC
AAATAGCCATAACTATTTGAACTTGATTCATAAAATAATTTATTTTTTTAAATCTCTTGCTTATT
AATCTCCTAAATATTAACAAACTAGTATAATTTTATTTTGAATAAACTGTATGAATAGAAACAAT
TATTTTATGACATAACAAAAGGTCATAACGATTTGAAATAAGTAATTGTTCAAATAGTCATAACT
ATTTGAACTAGTTTAGCAAACAA
Found at i:13181292 original size:25 final size:25
Alignment explanation
Indices: 13181238--13181292 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
13181228 TTATATGAAT
* *
13181238 AAAAACATTTGTTTTATGAGAGAAC
1 AAAAGCATTTGTTTTATGAGAAAAC
13181263 AAAAGCATTTGTTTTATGAGAAAAC
1 AAAAGCATTTGTTTTATGAGAAAAC
13181288 AAAAG
1 AAAAG
13181293 GTCATAACGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.47, C:0.07, G:0.16, T:0.29
Consensus pattern (25 bp):
AAAAGCATTTGTTTTATGAGAAAAC
Found at i:13182041 original size:157 final size:157
Alignment explanation
Indices: 13181755--13182172 Score: 649
Period size: 157 Copynumber: 2.7 Consensus size: 157
13181745 TATCTTACTT
13181755 ATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAACAACCTTGTATGATAAAAAA
1 ATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAACAACCTTGTATGATAAAAAA
* * *
13181820 CAATTGTTATATAACTAAACAAAAGGTAATAACAATATGAAATAGATGATTATTAAGATGGTGAT
66 CAATTGTTATATAACTAAAAAAAAGGTAATAACAATTTGAAATAGATGATTATTAAGATAGTGAT
13181885 AATTATTTGAACTGATTTAGTAAACTG
131 AATTATTTGAACTGATTTAGTAAACTG
13181912 ATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAACAACCTTGTATGATAAAAAA
1 ATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAACAACCTTGTATGATAAAAAA
* *
13181977 CAATTGTTATATAACTAAAAAAAAGGTAATAACAATTTGAAATAGATGATTGTTGAGATAGTGAT
66 CAATTGTTATATAACTAAAAAAAAGGTAATAACAATTTGAAATAGATGATTATTAAGATAGTGAT
*
13182042 AATTATTTGAACTGATTTGGTAAACTG
131 AATTATTTGAACTGATTTAGTAAACTG
* * * * * **
13182069 ATTAATTTTTTAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGA-ATTGAA
1 ATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAACAACCTTGTATGATA-AAAA
* * * * *
13182133 ACAATTGTTTTATGACAAAATAAAAAAGTCATAACAATTT
65 ACAATTGTTATATAACTAAA-AAAAAGGTAATAACAATTT
13182173 TACATAGACA
Statistics
Matches: 241, Mismatches: 18, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
156 1 0.00
157 223 0.93
158 17 0.07
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.38
Consensus pattern (157 bp):
ATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTCCAAACAACCTTGTATGATAAAAAA
CAATTGTTATATAACTAAAAAAAAGGTAATAACAATTTGAAATAGATGATTATTAAGATAGTGAT
AATTATTTGAACTGATTTAGTAAACTG
Found at i:13182679 original size:180 final size:177
Alignment explanation
Indices: 13182487--13182819 Score: 447
Period size: 176 Copynumber: 1.9 Consensus size: 177
13182477 CTAATGGTTT
* * * *
13182487 TAACTTTTTGAACTGGTTTTGTAAGCAAATTTATATGTTAAATCTCTTACATAATAATTTTTGAA
1 TAACTATTTGAACTAGTTTGGTAAACAAATTTATATGTTAAATCTCTT--AT--TAATTTTTGAA
*
13182552 ACATTATTAAATTAGTATTATTTT-TAACAAAATAAGCTTCTATGATC-AGAAACAATTGTTTTA
62 ACATTAATAAATTAGTATTATTTTATAAC-AAATAAGCTTCTATGATCTA-AAACAATTGTTTTA
*
13182615 TGACAAAAC-AAAGATCTTAACGATTTGAGATTGATAATTGTTCAAATAGTCA
125 TGACAAAACAAAAGATCATAACGATTTGAGATTGATAATTGTTCAAATAGTCA
*** * * *
13182667 TAACTATTTGAACTAGTTTGGTAAATTGATTTATTTTTTAAATCTCTTATTAATTTTTGAAATAT
1 TAACTATTTGAACTAGTTTGGTAAACAAATTTATATGTTAAATCTCTTATTAATTTTTGAAACAT
** *
13182732 TAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATCTAAAACAATTGTTTTATGACAA
66 TAATAAATTAGTATTATTTTATAACAAATAAGCTTCTATGATCTAAAACAATTGTTTTATGACAA
*
13182797 AACAAAAGGTCATAACGATTTGA
131 AACAAAAGATCATAACGATTTGA
13182820 AATACACATC
Statistics
Matches: 134, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
176 73 0.54
177 20 0.15
178 2 0.01
180 39 0.29
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.42
Consensus pattern (177 bp):
TAACTATTTGAACTAGTTTGGTAAACAAATTTATATGTTAAATCTCTTATTAATTTTTGAAACAT
TAATAAATTAGTATTATTTTATAACAAATAAGCTTCTATGATCTAAAACAATTGTTTTATGACAA
AACAAAAGATCATAACGATTTGAGATTGATAATTGTTCAAATAGTCA
Found at i:13182763 original size:176 final size:173
Alignment explanation
Indices: 13182541--13183129 Score: 513
Period size: 176 Copynumber: 3.3 Consensus size: 173
13182531 TCTTACATAA
* * * * *
13182541 TAATTTTTGAAACATTATTAAATTAGTATTATTTT-TAACAAAATAAGCTTCTATGATCAGAAAC
1 TAATTTTTGAAATATTAATAAATTAGTATTATTTTAT-TCCAAATAAGCTTGTATGATCAGAAAC
*
13182605 AATTGTTTTATGACAAAACAAAGATCTTAACGATTTGAGATTGATAATTGTTCAAATAGTCATAA
65 AATTGTTTTATGACAAAACAAAGATCTTAACGATTTGA-ATT-ACAATTGTTCAAATAGTCATAA
*
13182670 CTATTTGAACTAGTTTGGTAAATTGATTTATTTTTTAAATC-TCTTAT
128 CTATTT-AACT-GTTTGGTAAATAGATTTATTTTTTAAATCTTCTTAT
*
13182717 TAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGATCTA-AAAC
1 TAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGATC-AGAAAC
* * * ** * * *
13182781 AATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATACACATCATTCTAATGGCCATAA
65 AATTGTTTTATGACAAAAC-AAAGATCTTAACGATTTGAATTACA-ATTGTTCAAATAGTCATAA
* * * *
13182846 TTTATATTAACTGATTTAGAAAACAGATTTATTTTTTTAAATTTCTTACTTAT
128 -CTAT-TTAACTG-TTTGGTAAATAGATTTA-TTTTTTAAA--TCTT-CTTAT
*** * ** * * * * ***
13182899 TAATTTCAAAAATATTAATAAACTAGTATTATTTTATTCCATCTAACCTTGTATTAACTGATTTA
1 TAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAGAAACA
* * * * * * *
13182964 ATTGTTTTATGACAAATCAAAAAT-TTGATGATTTTAAATAAACAATTGTTCAAATAGTAATAAC
66 ATTGTTTTATGACAAAACAAAGATCTTAACGA-TTTGAAT-TACAATTGTTCAAATAGTCATAAC
*
13183028 TATTTAAAATTGTTTGGTAAATAGATTTATTTTTTAAAAATCTATTTCTTAT
129 TATTT--AACTGTTTGGTAAATAGATTTATTTTTT--AAATC---TTCTTAT
** * *
13183080 TAATTTTTTG-AATGCTAATAAATTAGTATTAATTTATTCCAAATATGCTT
1 TAA-TTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTT
13183130 ATTAATTTTC
Statistics
Matches: 325, Mismatches: 65, Indels: 41
0.75 0.15 0.10
Matches are distributed among these distances:
175 2 0.01
176 90 0.28
177 39 0.12
178 11 0.03
179 10 0.03
180 23 0.07
181 70 0.22
182 80 0.25
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (173 bp):
TAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCCAAATAAGCTTGTATGATCAGAAACA
ATTGTTTTATGACAAAACAAAGATCTTAACGATTTGAATTACAATTGTTCAAATAGTCATAACTA
TTTAACTGTTTGGTAAATAGATTTATTTTTTAAATCTTCTTAT
Found at i:13183174 original size:22 final size:21
Alignment explanation
Indices: 13183131--13183175 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
13183121 AATATGCTTA
* *
13183131 TTAATTTTCTTGCTTATTATT
1 TTAAATTTCTTGCTTATAATT
13183152 TTAAATTTCTTGCTTACTAATT
1 TTAAATTTCTTGCTTA-TAATT
13183174 TT
1 TT
13183176 TTTAATGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.22, C:0.11, G:0.04, T:0.62
Consensus pattern (21 bp):
TTAAATTTCTTGCTTATAATT
Found at i:13183748 original size:180 final size:177
Alignment explanation
Indices: 13183210--13184279 Score: 767
Period size: 180 Copynumber: 6.0 Consensus size: 177
13183200 TTTTAGACTA
* * * * *
13183210 AAACAATTGTTTTACGACAAAAC-AAAGTGTCACAA-AGAATTGAAATAGCTAA-TAGTTCGAAT
1 AAACAATTGTTTTATGACCAAACAAAAG-GTCATAATAG--TTGAAATAGATAATTA-TTCAAAT
* ** * * *
13183272 GGA-CATAACTATTTGAACTTGTTCATGAATAGATTTATTTTTTAAATCTCCAACTTATTAATTT
62 -AATCATAACTATTTGAACTTGTTCAAAAATAGATTTA-TTTTTAAAT-TTCTACTTATTAAATT
* *
13183336 TTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATGAATAG
124 TTAAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACAG
* * * * *
13183390 AAATAATTGTTTTATGA-CAAGA-TAAAGGATCATAATATTTGAAATAAATAATTGTTCAAATAA
1 AAACAATTGTTTTATGACCAA-ACAAAAGG-TCATAATAGTTGAAATAGATAATTATTCAAATAA
* * * * * * * *
13183453 TCGTAACTATTTGAACTCGCTCAATAAACAGATTTATTATTTTAA-TTCTATTTATTAATTTTTG
64 TCATAACTATTTGAACTTGTTCAA-AAATAGATTTATT-TTTAAATTTCTACTTATTAAATTTTA
* * * * *
13183517 GAAT-TGTAAAAAATTAGTATTATTTTATTCCGAATAAGCTTTTATGAACAG
127 AAATAT-TAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACAG
* * * * * *
13183568 AAACAATTAG-TTTATGACCAAACAAAAGATCATAGTGAGTTGAAATGGATAATTGTTGAAATAG
1 AAACAATT-GTTTTATGACCAAACAAAAGGTCATAAT-AGTTGAAATAGATAATTATTCAAATAA
* * *
13183632 TTATAACTATTTGAA-TGTGTTCGAAAAATATATTTATTTTTAAAATTTTTACTTATTAAATTTT
64 TCATAACTATTTGAACT-TGTTC-AAAAATAGATTTATTTTT-AAATTTCTACTTATTAAATTTT
** * * * *
13183696 GTAATATTAATCAATTTA-TATTATTTTATTTGAAATAAGCTTGCAAGAACAG
126 AAAATATTAAT-AAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACAG
*** * * * *
13183748 AATTGATTGTTTTATGA-CAAAGCAAAAGGCCATAATATTTTGAAATAGATAATTATTCATATAG
1 AAACAATTGTTTTATGACCAAA-CAAAAGGTCATAATA-GTTGAAATAGATAATTATTCAAATAA
* * * * *
13183812 TCATAACTATTCGAACATGTTCAATAAACAGATTAATTTTT-AATTCTCTTACTCATT-AATTTT
64 TCATAACTATTTGAACTTGTTCAA-AAATAGATTTATTTTTAAATT-TC-TACTTATTAAATTTT
** * * * * * *
13183875 TTATTATTAATAAATTAGTATTATTTTATTTCAAAAAAGCTTATGTGACCTG
126 AAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACAG
* * * * *
13183927 AAGCAATTGTTTTATTACAAAACAAAAGGTTA-AATGAGTTGAAATAGTTAATTATTCAAATAAT
1 AAACAATTGTTTTATGACCAAACAAAAGGTCATAAT-AGTTGAAATAGATAATTATTCAAATAAT
* * * * *
13183991 CATGACTATTTCAACTTGTTCAAAAAATATATTTATTTTTTAAATCTTATACTTATT-AATTGTC
65 CATAACTATTTGAACTTGTTC-AAAAATAGATTTA-TTTTTAAAT-TTCTACTTATTAAATT-TT
* * * * * * *
13184055 AAAATATTAATAAATTAATATTCTTTTAATCCTAACAACCTTGTATGAACAG
126 AAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACAG
* * * * * * * *
13184107 AAACAATTATTTTATTACAAAACAAAAGGTCATAACAATTTAAAATAAATAATTATTCAAATACT
1 AAACAATTGTTTTATGACCAAACAAAAGGTCATAA-TAGTTGAAATAGATAATTATTCAAATAAT
* * * * * *
13184172 CATAA-TGATTTAAACTTATTTAATAAACAGATTTATTTTTAAAATTTTTTACTTACT-AATTAT
65 CATAACT-ATTTGAACTTGTTCAA-AAATAGATTTATTTTT-AAA-TTTCTACTTATTAAATT-T
*** *
13184235 CCTAATATTAATAAATTTA-TATTATTTTA-TTCAGAATAAGGTTGT
125 TAAAATATTAATAAA-TTAGTATTATTTTATTTCA-AATAAGCTTGT
13184280 TTGGTAAACA
Statistics
Matches: 701, Mismatches: 147, Indels: 83
0.75 0.16 0.09
Matches are distributed among these distances:
177 1 0.00
178 143 0.20
179 190 0.27
180 259 0.37
181 104 0.15
182 4 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (177 bp):
AAACAATTGTTTTATGACCAAACAAAAGGTCATAATAGTTGAAATAGATAATTATTCAAATAATC
ATAACTATTTGAACTTGTTCAAAAATAGATTTATTTTTAAATTTCTACTTATTAAATTTTAAAAT
ATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACAG
Found at i:13184063 original size:359 final size:354
Alignment explanation
Indices: 13183275--13184266 Score: 966
Period size: 359 Copynumber: 2.8 Consensus size: 354
13183265 TTCGAATGGA
** * *
13183275 CATAACTATTTGAACTTGTTCATGAATAGATTTATTTTTTAAATCTCCA-ACTTATTAATTTTTA
1 CATAACTATTTGAACTTGTTCAAAAATATATTTATTTTTTAAATCT-TATACTTATTAA-TTTTA
* *
13183339 AAATATTAATAAATTAGTATTATTTTATTTCAAATAAACTTGTATGAATAGAAATAATTGTTTTA
64 AAATATTAATAATTTA-TATTATTTTATTTCAAATAAACTTGTATGAACAGAAATAATTGTTTTA
* *
13183404 TGAC-AAG-ATAAAGGATCATAATATTTGAAATAAATAATTGTTCAAATAATCGTAACTATTTGA
128 TGACAAAGCA-AAAGG-TCATAATATTTGAAATAAATAATTATTCAAATAATCATAACTATTTGA
* * * * *
13183467 ACTCGCTCAATAAACAGATTTATTATTTTAATTCTATT--TATTAATTTTTGGAATT-GTAAAAA
191 ACT-GTTCAATAAACAGA-TTAAT-TTTTAATTCTATTACTATTAATTTTT--TATTATTAATAA
* * * *
13183529 ATTAGTATTATTTTATTCCGAATAAGCTTTTATGAACAGAAACAATTAGTTTATGACCAAACAAA
251 ATTAGTATTATTTTATTCCAAAAAAGCTTATATGAACAGAAACAATTAGTTTATGACAAAACAAA
* * * * *
13183594 AGATCATAGTGAGTTGAAATGGATAATTGTTGAAATAGT
316 AGATCATAATGAGTTGAAATAGATAATTATTCAAATAAT
* * *
13183633 TATAACTATTTGAA-TGTGTTCGAAAAATATATTTATTTTTAAAAT-TTTTACTTATTAAATTTT
1 CATAACTATTTGAACT-TGTTC-AAAAATATATTTATTTTTTAAATCTTATACTTATT-AATTTT
** * * * * * *
13183696 GTAATATTAATCAATTTATATTATTTTATTTGAAATAAGCTTGCAAGAACAGAATTGATTGTTTT
63 AAAATATTAAT-AATTTATATTATTTTATTTCAAATAAACTTGTATGAACAGAAATAATTGTTTT
* * * * *
13183761 ATGACAAAGCAAAAGGCCATAATATTTTGAAATAGATAATTATTCATATAGTCATAACTATTCGA
127 ATGACAAAGCAAAAGGTCATAATA-TTTGAAATAAATAATTATTCAAATAATCATAACTATTTGA
*
13183826 ACATGTTCAATAAACAGATTAATTTTTAATTCTCTTACTCATTAATTTTTTATTATTAATAAATT
191 AC-TGTTCAATAAACAGATTAATTTTTAATTCTATTACT-ATTAATTTTTTATTATTAATAAATT
* * * * * *
13183891 AGTATTATTTTATTTCAAAAAAGCTTATGTGACCTGAAGCAATT-GTTTTATTACAAAACAAAAG
254 AGTATTATTTTATTCCAAAAAAGCTTATATGAACAGAAACAATTAG-TTTATGACAAAACAAAAG
* * *
13183955 GTTA-AATGAGTTGAAATAGTTAATTATTCAAATAAT
318 ATCATAATGAGTTGAAATAGATAATTATTCAAATAAT
* * *
13183991 CATGACTATTTCAACTTGTTCAAAAAATATATTTATTTTTTAAATCTTATACTTATTAATTGTCA
1 CATAACTATTTGAACTTGTTC-AAAAATATATTTATTTTTTAAATCTTATACTTATTAATT-TTA
* * * * * * * * *
13184056 AAATATTAATAAATTAATATTCTTTTAATCCTAACAACCTTGTATGAACAGAAACAATTATTTTA
64 AAATATTAAT-AATTTATATTATTTTATTTCAAATAAACTTGTATGAACAGAAATAATTGTTTTA
* * * * * *
13184121 TTACAAAACAAAAGGTCATAACAATTTAAAATAAATAATTATTCAAATACTCATAA-TGATTTAA
128 TGACAAAGCAAAAGGTCATAA-TATTTGAAATAAATAATTATTCAAATAATCATAACT-ATTTGA
* * * * * ** *
13184185 ACTTATTTAATAAACAGATTTATTTTTAAAATT-TTTTACTTACTAATTATCCTAATATTAATAA
191 AC-TGTTCAATAAACAGATTAATTTTT--AATTCTATTAC-TATTAATT-TTTTATTATTAATAA
13184249 ATTTA-TATTATTTTATTC
251 A-TTAGTATTATTTTATTC
13184267 AGAATAAGGT
Statistics
Matches: 518, Mismatches: 92, Indels: 45
0.79 0.14 0.07
Matches are distributed among these distances:
357 13 0.03
358 168 0.32
359 280 0.54
360 24 0.05
361 30 0.06
362 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (354 bp):
CATAACTATTTGAACTTGTTCAAAAATATATTTATTTTTTAAATCTTATACTTATTAATTTTAAA
ATATTAATAATTTATATTATTTTATTTCAAATAAACTTGTATGAACAGAAATAATTGTTTTATGA
CAAAGCAAAAGGTCATAATATTTGAAATAAATAATTATTCAAATAATCATAACTATTTGAACTGT
TCAATAAACAGATTAATTTTTAATTCTATTACTATTAATTTTTTATTATTAATAAATTAGTATTA
TTTTATTCCAAAAAAGCTTATATGAACAGAAACAATTAGTTTATGACAAAACAAAAGATCATAAT
GAGTTGAAATAGATAATTATTCAAATAAT
Found at i:13184398 original size:267 final size:266
Alignment explanation
Indices: 13184026--13184539 Score: 642
Period size: 267 Copynumber: 1.9 Consensus size: 266
13184016 AATATATTTA
* * *
13184026 TTTTTTAAATCTTATACTTATTAATTGTCAAAATATTAATAAATTAATATTCTTTTAATCCTAAC
1 TTTTTTAAATCTTATAATTATTAATTGTCAAAATATTAATAAATTAATATTATTTTAATCCGAAC
* * * *
13184091 AACCTTGTATGAACAGAAACAATTATTTTATTACAAAACAAAAGGTCATAACAATTTAAAATAAA
66 AAACTTATATGAACAGAAACAATTACTTTATGACAAAACAAAAGGTCATAACAATTTAAAATAAA
* *
13184156 TAATTATTCAAATACTCAT-AATGATTTAAACTTA-TTTAATAAACAGATTTATTTTTAAAATTT
131 TAATTATTCAAATACTCATGAAT-ATTTAAAC-TAGTTCAACAAACAGATTTATTTTT-AAATTT
** *
13184219 TTTACTTACTAATTATCCTAATATTAATAAATTTA-TATTATTTT-ATTCAGAATAAGGTTGTTT
193 TTTACTTACTAATTATCAAAATATTAATAAA-TAAGTATTATTTTAATTC-GAATAAGGTTGTTT
13184282 GGTAAACATAT
256 GGTAAACATAT
* * ** ** *
13184293 TTTTTTAAATCTCT-TAATTATTAATTTTTAAAATATTAATAAATTTGTATTATTTTGCTTCGAA
1 TTTTTTAAATCT-TATAATTATTAATTGTCAAAATATTAATAAATTAATATTATTTTAATCCGAA
* ** * ** * *
13184357 TAAACTTATATGAACTTAAACAATTCCTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAG
65 CAAACTTATATGAACAGAAACAATTACTTTATGACAAAACAAAAGGTCATAACAATTTAAAATAA
* * * *
13184422 ATAATTATTCAAATACTCATGACTATTTGATCTAGTTCAACAAACATATTTATTTTTAAATTTTT
130 ATAATTATTCAAATACTCATGAATATTTAAACTAGTTCAACAAACAGATTTATTTTTAAATTTTT
* *
13184487 TACTTATTAATTGTCAAAATATTAATAAATAAGTATTATTTTAATTCGAATAA
195 TACTTACTAATTATCAAAATATTAATAAATAAGTATTATTTTAATTCGAATAA
13184540 ACTTGTATGA
Statistics
Matches: 209, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
265 2 0.01
266 50 0.24
267 154 0.74
268 3 0.01
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (266 bp):
TTTTTTAAATCTTATAATTATTAATTGTCAAAATATTAATAAATTAATATTATTTTAATCCGAAC
AAACTTATATGAACAGAAACAATTACTTTATGACAAAACAAAAGGTCATAACAATTTAAAATAAA
TAATTATTCAAATACTCATGAATATTTAAACTAGTTCAACAAACAGATTTATTTTTAAATTTTTT
ACTTACTAATTATCAAAATATTAATAAATAAGTATTATTTTAATTCGAATAAGGTTGTTTGGTAA
ACATAT
Found at i:13184481 original size:180 final size:180
Alignment explanation
Indices: 13184293--13186337 Score: 1292
Period size: 180 Copynumber: 11.4 Consensus size: 180
13184283 GTAAACATAT
* * * * *
13184293 TTTTTTAAATCTCTTAATTATTAATTTTTAAAATATTAATAAATTTGTATTATTTTGCTTCGAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTCAAAT
* ** *
13184358 AAACTTATATGAACTTAAACAATTCCTTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGA
65 AAACTTATATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAGA
* * * * * *
13184423 TAATTATTCAAATACTCATGACTATTTGATCTAGTTCAACAAACATATTTA
130 TAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* * * ** * *
13184474 -TTTTTAAATTTTTTACTTATTAATTGTCAAAATATTAATAAATAAGTATTATTTTAATTCGAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTT-ATTCAAAT
* * ** ** * * * * *
13184538 AAACTTGTATGAA-TAGAAACAATTGTTTTATGTTAGGATAAAAAGTAATAATGGTTTGAAATAA
65 AAACTTATATGAACTA-AAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
* * * *
13184602 ATAATT-TGTCAAATAATCATAATTATTTAAACTGGTTTC-ATAAATA-AGTTTA
129 ATAATTGT-TCAAATAGTCATAACTATTTGAACTGG-TTCAATAAACATA-TTTA
* * *
13184654 TTTTTTAAA--TATT--TTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATT-ATGAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCA--AA
* * * * * * *
13184714 CAAACTTATATGAACAAAAACATTTGTTGTATAACAAAACAAAAGGTTATAATGATTTGAAATAA
64 TAAACTTATATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
* * * * * **
13184779 ATAATTGTTCAAATAATCATAATTATTTAAATTGGTT-AGGTAAACATAAATA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCA-ATAAACATATTTA
*
13184831 TTTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTCA-TTTTATTTTATTCCAA
1 -TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATT-AGTATTATTTTATT-CAA
* * * *
13184895 ATAAGC-TAGTATAAACTAAAA-AATTATTTTATGACAAAATAAAAGGTTATAACT-TTTTGAAA
63 ATAAACTTA-TATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAA-TGATTTGAAA
* * * * * * * *** *
13184957 TGGCTAATTATTCATATAGTCTTAAATATTTGCACTGGTTTGGTAAACAAATTTA
126 TAGATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* * * * * * * * *
13185012 -TTTGTAATTCTTTTAGTTATTAATTATCGAAATATTAATATATTAGTATCATATTATTCCAAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATT-CAAAT
* * * * * * * * ** *
13185076 AAGCTTGTATGAA-TAGAAATAATTGTTTTGTGATAGAACAAATGGTTATAACAATTTGAAATAT
65 AAACTTATATGAACTA-AAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
* * * *
13185140 ACAATTGTTCAAATAATCATAACTATTTGAACTTGTTCAATAAACAGATTTA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* *
13185192 TTTTTTAAA--TC-T-CTTATTAATTTTTG-AATGATTAATAAATTAGTATTACTTTATTCTTAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAAT-ATTAATAAATTAGTATTATTTTATTC-AAA
* * * * * * * * * * ** *
13185252 TAAGCTTAAAGGATCAAAAACATTTGTTATATGACCAAACAAAAGGTAATAACAATTTGAAATAA
64 TAAACTTATATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
* * * * * * * *** * *
13185317 ATAATTGTTGAAATGGCCATAATTATTTAAAATGATTGGGTAAACATGTTCA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* * * * **
13185369 CTTTTTAAATCACTTACTTATTAATTTTTGGAATATTAATAAATTTGTATTATTTTATTTTGAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTA-TTCAAAT
* * * * ** *
13185434 AAGCTTGTACT-ATCTAAAACAATTATTTTATGACAAAACAAAAGGTCATAATTTTTTTAAATAG
65 AAACTTATA-TGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
* ** * * * * *
13185498 ACAATTGTTCAAATAGAAATAACTATTTGAATTTGTTCGATAAATAGATTTA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* * * * *
13185550 TTTTTTAAATATCTTTCTTATTAATTTTTTAAA-GTTAATAAATTAGTATTCA-TTTATTTTAAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATT-ATTTTA-TTCAAA
* * * * * * * * * * *
13185613 TAAACTTATATGAATTGAAATAGTTGTTTTATGACTAAACAAAAAGTAAGAATGATTTCAAATGG
64 TAAACTTATATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
** ** * * * * * *
13185678 ATAATTGTTTTAATAGTGTTAACCATATGAATTGATT-AA-AAGA-AAAATTA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAA-ACATATTTA
* * * * *
13185728 TTTTTTAAATCTCTTCCTTATTAATTTTTGAAATATTATTCAATTTGTATTATTTTAATCTAAAT
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTC-AAAT
* * * * * **
13185793 AAGCTTGTACGAAC-AAAA-AATT-TGTGTTAAGACAAAACAAAAGGTCATAACAATTTGAAATA
65 AAACTTATATGAACTAAAACAATTAT-T-TTATGACAAAACAAAAGGTTATAATGATTTGAAATA
* * * ** **** ** *
13185855 GATAATCGTTCATATAGTCTTAACTATTTGAACTCATTTGGCAATTAGATTTA
128 GATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* * * ** * * *
13185908 TTTTTTAATTTTTTTTGTTATTAAGTTTT-AGAATATTATTCAATTAGTATTATTTTATTTC-AA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTA-TTCAAA
* * *
13185971 TAAA-ATAGTATGAAC-AGAACCAA-TAGTTTGATGACAAAACAAAAGGTTATAATGATTTGAAA
64 TAAACTTA-TATGAACTA-AAACAATTA-TTTTATGACAAAACAAAAGGTTATAATGATTTGAAA
* * * * *** * *
13186033 TAGATAATTATTCAAATAGT-A-AAATGATTTGAAATTGTTTGGTAAATAGATTTA
126 TAGATAATTGTTCAAATAGTCATAACT-ATTTGAACTGGTTCAATAAACATATTTA
** * * * **
13186087 CCTTTTAATTCTCTTACTAATTAATTTTCT-AAATATAAATAAATTAGTATTATTTTATTTTGAA
1 TTTTTTAAATCTCTTACTTATTAATTTT-TGAAATATTAATAAATTAGTATTATTTTA-TTCAAA
* * * * ** * ** *
13186151 CAAACTTATATAAACAAAAACAATTATTTTATGACGAAACAAAAACTAATAACAATTTGAAATAT
64 TAAACTTATATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAG
* * * * * * * *
13186216 AT-ATTTTTCAAATAGTTATAATTATTTGAATTGGTTCAGTAAATAGAATTA
129 ATAATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
* * * ** *
13186267 TTTTTTAAATCTCTTACGTATAAAATTTTGAAATATTAGCAAATTAGT-TATATTTTCTTCCAAA
1 TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTAT-TATTTTATT-CAAA
13186331 TAAACTT
64 TAAACTT
13186338 GTATAAGCTG
Statistics
Matches: 1448, Mismatches: 348, Indels: 137
0.75 0.18 0.07
Matches are distributed among these distances:
176 10 0.01
177 253 0.17
178 119 0.08
179 205 0.14
180 545 0.38
181 255 0.18
182 59 0.04
183 1 0.00
184 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (180 bp):
TTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTCAAATA
AACTTATATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTTATAATGATTTGAAATAGAT
AATTGTTCAAATAGTCATAACTATTTGAACTGGTTCAATAAACATATTTA
Found at i:13185686 original size:538 final size:535
Alignment explanation
Indices: 13184282--13187120 Score: 1902
Period size: 538 Copynumber: 5.3 Consensus size: 535
13184272 AAGGTTGTTT
* *
13184282 GGTAAACATAT-TTTTTTAAATCTCTTAATTATTAATTTTTAAAATATTAATAAATTTGTATTAT
1 GGTAAACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTATTAT
** * **
13184346 TTTGCTTCGAATAAACTTA-TATGAACTTAAACAATTCCTTTATGACAAAACAAAAGGTCATAAT
66 TTTATTTCGAATAAAC-TAGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAAT
* * * * * * * *
13184410 GATTTGAAATAGATAATTATTCAAATACTCATGACTATTTG-ATCTAGTTCAACAAACATATTTA
130 GATTTGAAATAGACAATTATTCAAATAGTAATAACTATTTGAAT-TTGTTCGATAAACAGATTTA
* * * * * *
13184474 TTTTTAAATTTTTTACTTATTAATTGTCAAAATATTAATAAATAAGTATTATTTTAATTCGAATA
194 TTTTTAAATTCTTTACTTATTAATTTTCTAAATATTAATAAATTAGTATTATTTTATTTCAAATA
* * * * ***
13184539 AACTTGTATGAATAGAAACAATTGTTTTATG-TTAGGATAAAAAGTAATAATGGTTTGAAATAAA
259 AACTTATATGAATAGAAACAATTGTTTTATGACTAGAACAAAAAGTAATAACAATTTGAAAT-AA
* * * * * *
13184603 TAATT-TGTCAAATAATCATAATTATTTAAACTGGTTTC-ATAAATA-AGTTTATTTTTTAAATA
323 TAATTGT-TCAAATAATCATAACTATTTGAA-TTGATTCAATAAATAGA-ATTATTTTTTAAATC
* * * * * * *
13184665 TTTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTATGAACAAACTTATATGAACA
385 TCTTATTAATTTTTGAAATATTAATAAATTAGTATTACTTTATTCTAAATAAGCTTATACGAACA
* * ** *
13184730 AAAACATTTGTTGTATAACAAAACAAAAGGTTATAATGATTTGAAATAAATAATTGTTCAAATAA
450 AAAACATTTGTT-TATGACAAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTCAAATAG
* *
13184795 TCATAATTATTTAAATTGGTTA
514 TCATAATTATTTAAAATGATTA
* * ** *
13184817 GGTAAACATAAATATTTTTTTAAATCTCTTACTTATTAATTTTTGAAATATTAATAAATTCATTT
1 GGTAAACAT--TTA-TTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTAT
* * * * * *
13184882 TATTTTATTCCAAATAAGCTAGTATAAACTAAAA-AATTATTTTATGACAAAATAAAAGGTTATA
63 TATTTTATTTCGAATAAACTAGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATA
* * * ** * * * * * * *
13184946 ACT-TTTTGAAAT-GGCTAATTATTCATATAGTCTTAAATATTTGCACTGGTTTGGTAAACAAAT
128 A-TGATTTGAAATAGAC-AATTATTCAAATAGTAATAACTATTTGAATTTGTTCGATAAACAGAT
* * * * * * * *
13185009 TTATTTGT-AATTCTTTTAGTTATTAATTATCGAAATATTAATATATTAGTATCATATTATTCCA
191 TTATTTTTAAATTC-TTTACTTATTAATTTTCTAAATATTAATAAATTAGTATTATTTTATTTCA
* * * * ** *
13185073 AATAAGCTTGTATGAATAGAAATAATTGTTTTGTGA-TAGAACAAATGGTTATAACAATTTGAAA
255 AATAAACTTATATGAATAGAAACAATTGTTTTATGACTAGAACAAAAAGTAATAACAATTTGAAA
* * *
13185137 TATACAATTGTTCAAATAATCATAACTATTTGAACTTG-TTCAATAAACAGATTTATTTTTTAAA
320 TA-ATAATTGTTCAAATAATCATAACTATTTGAA-TTGATTCAATAAATAGAATTATTTTTTAAA
* * *
13185201 TCTCTTATTAATTTTTG-AATGATTAATAAATTAGTATTACTTTATTCTTAATAAGCTTAAAGGA
383 TCTCTTATTAATTTTTGAAAT-ATTAATAAATTAGTATTACTTTATTCTAAATAAGCTTATACGA
* * *
13185265 TCAAAAACATTTGTTATATGACCAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTGAAA
447 ACAAAAACATTTGTT-TATGACAAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTCAAA
* * *
13185330 TGGCCATAATTATTTAAAATGATTG
511 TAGTCATAATTATTTAAAATGATTA
* * **
13185355 GGTAAACATGTTCACTTTTTAAATCACTTACTTATTAATTTTTGGAATATTAATAAATTTGTATT
1 GGTAAACAT-TT-ATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTATT
* * * *
13185420 ATTTTATTTTGAATAAGCTTGTACT-ATCTAAAACAATTATTTTATGACAAAACAAAAGGTCATA
64 ATTTTATTTCGAATAAACTAGTA-TGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * *
13185484 ATTTTTTTAAATAGACAATTGTTCAAATAGAAATAACTATTTGAATTTGTTCGATAAATAGATTT
128 ATGATTTGAAATAGACAATTATTCAAATAGTAATAACTATTTGAATTTGTTCGATAAACAGATTT
* * *
13185549 ATTTTTTAAATATCTTT-CTTATTAATTTTTTAAA-GTTAATAAATTAGTATTCA-TTTATTTTA
193 A-TTTTTAAAT-TCTTTACTTATTAATTTTCTAAATATTAATAAATTAGTATT-ATTTTATTTCA
* * * * ** *
13185611 AATAAACTTATATGAATTGAAATAGTTGTTTTATGACTA-AACAAAAAGTAAGAATGATTTCAAA
255 AATAAACTTATATGAATAGAAACAATTGTTTTATGACTAGAACAAAAAGTAATAACAATTTGAAA
* ** * ** * * *
13185675 TGGATAATTGTTTTAATAGTGTTAACCATATGAATTGATT-AA-AAGA-AAAATTATTTTTTAAA
320 T-AATAATTGTTCAAATAATCATAACTATTTGAATTGATTCAATAA-ATAGAATTATTTTTTAAA
* * * * * *
13185737 TCTCTTCCTTATTAATTTTTGAAATATTATTCAATTTGTATTATTTTAATCTAAATAAGCTTGTA
383 --TC-T-CTTATTAATTTTTGAAATATTAATAAATTAGTATTACTTTATTCTAAATAAGCTTATA
* * * *
13185802 CGAACAAAAA-ATTTGTGTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATCGTTC
444 CGAACAAAAACATTTGT-TTATGACAAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTC
* * * * * * *
13185866 ATATAGTCTTAACTATTTGAACTCATTT
508 AAATAGTCATAATTATTTAAAATGATTA
* * * * * ** * * * * *
13185894 GGCAATTAGATTTATTTTTTAATTTTTTTTGTTATTAAGTTTTAGAATATTATTCAATTAGTATT
1 GGTAA--ACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTATT
* * * *
13185959 ATTTTATTTC-AATAAAATAGTATGAAC-AGAACCAA-TAGTTTGATGACAAAACAAAAGGTTAT
64 ATTTTATTTCGAATAAACTAGTATGAACTA-AAACAATTA-TTTTATGACAAAACAAAAGGTCAT
* * * * *
13186021 AATGATTTGAAATAGATAATTATTCAAATAGTAA-AA-TGATTTGAAATTGTTTGGTAAATAGAT
127 AATGATTTGAAATAGACAATTATTCAAATAGTAATAACT-ATTTGAATTTGTTCGATAAACAGAT
* * * *
13186084 TTACCTTTT-AATTCTCTTACTAATTAATTTTCTAAATATAAATAAATTAGTATTATTTTATTTT
191 TTA-TTTTTAAATTCT-TTACTTATTAATTTTCTAAATATTAATAAATTAGTATTATTTTATTTC
* * * * * * * *
13186148 GAACAAACTTATATAAACAAAAACAATTATTTTATGACGA-AACAAAAACTAATAACAATTTGAA
254 AAATAAACTTATATGAATAGAAACAATTGTTTTATGACTAGAACAAAAAGTAATAACAATTTGAA
* * * * * *
13186212 AT-ATATATTTTTCAAATAGTTATAATTATTTGAATTGGTTCAGTAAATAGAATTATTTTTTAAA
319 ATAATA-ATTGTTCAAATAATCATAACTATTTGAATTGATTCAATAAATAGAATTATTTTTTAAA
* **
13186276 TCTCTTACGTATAAAATTTTGAAATATTAGCAAATTAG--TTA---TATT-T---T---C-T-T-
383 TCTCTTA--T-T-AATTTTTGAAATATTAATAAATTAGTATTACTTTATTCTAAATAAGCTTATA
* * * * * *
13186326 CCAA-ATAAAC--TTG--TAT----AAGCTGAAA--TAAT-ACGATTTGAAATAGATAATTGTTC
444 CGAACAAAAACATTTGTTTATGACAAAAC-AAAAGGTAATAACAATTTGAAATAAATAATTGTTC
* * ** ** *
13186379 ATATTGTCTTAACTGTTTGAATTGGTTCAA-GA-AA
508 AAATAGTC---A-TAATT--ATT--TAAAATGATTA
* * * * * * * * *
13186413 CGT--A-TTTTATTTTTTAAATCTCTTAGTAATGAATTTTCATAATATTATTAAATTAGTATTAT
1 GGTAAACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTATTAT
* * * * * *
13186475 TTTATTTCGAATAAACTTGTATGAACAAAAATAATTGA-TTTATGACAAAACAAAAGCTTATAAC
66 TTTATTTCGAATAAACTAGTATGAACTAAAACAATT-ATTTTATGACAAAACAAAAGGTCATAAT
* * * * * * * * *
13186539 AATTTGAAATAGATAA-TGTTCAAATAGTCATAACTATTTAAAATGGTTTGGTAAACAGATTTAT
130 GATTTGAAATAGACAATTATTCAAATAGTAATAACTATTTGAATTTGTTCGATAAACAGATTTA-
* * *
13186603 TTTTTAAA-TC--T-CTTACTAATTCTT-GAAATATTAATTAATTAGTATTATTTTATTTCAAAT
194 TTTTTAAATTCTTTACTTATTAATT-TTCTAAATATTAATAAATTAGTATTATTTTATTTCAAAT
* * * * * * *
13186663 AAGCTTGTATG-CTGAGAAACAATGGTTTTATGAC-AAAATAAAAGGTAATAACAATTTGAAATA
258 AAACTTATATGAAT-AGAAACAATTGTTTTATGACTAGAACAAAAAGTAATAACAATTTGAAATA
*** * * * * *
13186726 TATAATTGTTCAAACGGTCATAATTATTTGAACTGATTCGATAAATTGATTTATTTTTTAAATCT
322 -ATAATTGTTCAAATAATCATAACTATTTGAATTGATTCAATAAATAGAATTATTTTTTAAA--T
* * * * ** * * *
13186791 CTTGCTTATTAATTTTTGAAATATTAATAAAGTAGTACTATTTTATTTTGGATAAACTTTTATGA
384 C-T-CTTATTAATTTTTGAAATATTAATAAATTAGTATTACTTTATTCTAAATAAGCTTATACGA
** * * * * * ** * **
13186856 ACTGAAATAATTGTTTTATGAGAAAACAAAAGTTCATAATGATTTTAAATGGATAATTGTTCAAA
447 ACAAAAACATTTG-TTTATGACAAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTCAAA
* * **
13186921 TAATCATAACTATTTGAACTTG-TTCA
511 TAGTCATAATTATTT-AAAATGATT-A
* * * ** * **
13186947 -ATAAATAGATTTATTTTTTCAAATCTCTTGCTTATTAATTTTTTTAATGTTAATAAATTAATAT
1 GGT-AA-ACATTTATTTTTT-AAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTAT
* * * * * * * * * *
13187011 TATTTTATTTTGAATAAGCTTGTGTGAACTGAAATAATTGTTTTATGACTAATCAAAAGGTCAAA
63 TATTTTATTTCGAATAAACTAGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATA
** * * * * **
13187076 ACAATTTGAAATAAATAATTGTTCTAATAGTCTTAACTATTTGAA
128 ATGATTTGAAATAGACAATTATTCAAATAGTAATAACTATTTGAA
13187121 CTAGTTTGGC
Statistics
Matches: 1817, Mismatches: 369, Indels: 231
0.75 0.15 0.10
Matches are distributed among these distances:
510 1 0.00
511 86 0.05
512 72 0.04
513 33 0.02
514 75 0.04
515 95 0.05
516 12 0.01
517 7 0.00
518 1 0.00
519 6 0.00
520 1 0.00
521 3 0.00
522 3 0.00
523 4 0.00
524 4 0.00
525 2 0.00
526 2 0.00
527 3 0.00
528 3 0.00
530 4 0.00
531 1 0.00
533 9 0.00
534 4 0.00
535 18 0.01
536 30 0.02
537 179 0.10
538 683 0.38
539 382 0.21
540 86 0.05
541 8 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (535 bp):
GGTAAACATTTATTTTTTAAATCTCTTACTTATTAATTTTTAAAATATTAATAAATTTGTATTAT
TTTATTTCGAATAAACTAGTATGAACTAAAACAATTATTTTATGACAAAACAAAAGGTCATAATG
ATTTGAAATAGACAATTATTCAAATAGTAATAACTATTTGAATTTGTTCGATAAACAGATTTATT
TTTAAATTCTTTACTTATTAATTTTCTAAATATTAATAAATTAGTATTATTTTATTTCAAATAAA
CTTATATGAATAGAAACAATTGTTTTATGACTAGAACAAAAAGTAATAACAATTTGAAATAATAA
TTGTTCAAATAATCATAACTATTTGAATTGATTCAATAAATAGAATTATTTTTTAAATCTCTTAT
TAATTTTTGAAATATTAATAAATTAGTATTACTTTATTCTAAATAAGCTTATACGAACAAAAACA
TTTGTTTATGACAAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTCAAATAGTCATAAT
TATTTAAAATGATTA
Found at i:13185856 original size:358 final size:358
Alignment explanation
Indices: 13185028--13185888 Score: 839
Period size: 358 Copynumber: 2.4 Consensus size: 358
13185018 ATTCTTTTAG
* * * * * * * * *
13185028 TTATTAATTATCGAAATATTAATATATTAGTATCATATTATTCCAAATAAGCTTGTATGAA-TAG
1 TTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGTACGAACTA-
* * ** * * * * *
13185092 AAATAATTGTTTTGTGATAGAACAAATGGTTATAACAATTTGAAATATACAATTGTTCAAATA-A
65 AAACAATTATTTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAGA
*
13185156 TCATAACTATTTGAACTTGTTCAATAAACAGATTTATTTTTTAAATCTCTTATTAATTTTTGAAT
130 -CATAACTATTTGAACTTGTTCAATAAACAGATTTATTTTTTAAATCTCTTATTAATTTTTGAAA
* * *
13185221 GATTAATAAATTAGTATTACTTTATTCTTAATAAGCTTAAAGGATCAAAAACATTTGTTATATGA
194 GATTAATAAATTAGTATTACTTTATTCTTAATAAACTTAAAGAATCAAAAACAGTTGTTATATGA
* * * * ** *
13185286 CCAAACAAAAGGTAATAACAATTTGAAATAAATAATTGTTGAAATGGCCATAATTATTTAAAATG
259 CCAAACAAAAAGTAAGAACAATTTCAAATAAATAATTGTTGAAATAGCCATAACCATATAAAATG
** *
13185351 ATTGGGTAAACATGTTCACTTTTTAAATCACTTAC
324 ATTAAGTAAACATATTCACTTTTTAAATCACTTAC
* * * * * *
13185386 TTATTAATTTTTGGAATATTAATAAATTTGTATTATTTTATTTTGAATAAGCTTGTACTATCTAA
1 TTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGTACGAACTAA
* *** * *
13185451 AACAATTATTTTATGACAAAACAAAAGGTCATAATTTTTTTAAATAGACAATTGTTCAAATAGAA
66 AACAATTATTTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAGAC
* * * *
13185516 ATAACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAATATCTTTCTTATTAATTTTTTA
131 ATAACTATTTGAACTTGTTCAATAAACAGATTTATTTTTT-AA-ATC--TCTTATTAATTTTTGA
* ** * *
13185581 AAG-TTAATAAATTAGTATT-CATTTATT-TTAAATAAACTTATATGAAT-TGAAATAGTTGTTT
192 AAGATTAATAAATTAGTATTAC-TTTATTCTT-AATAAACTTA-AAGAATCAAAAACAGTTGTTA
* ** ** ** *** *
13185642 TATGACTAAACAAAAAGTAAGAATGATTTCAAATGGATAATTGTTTTAATAGTGTTAACCATATG
254 TATGACCAAACAAAAAGTAAGAACAATTTCAAATAAATAATTGTTGAAATAGCCATAACCATATA
* * * *
13185707 AATTGATTAAAAG-AAA-A-ATT-ATTTTTTAAATCTCTTCC
319 AAATGATT--AAGTAAACATATTCACTTTTTAAATCACTTAC
* *
13185745 TTATTAATTTTTGAAATATTATTCAATTTGTATTATTTTAATCTAAATAAGCTTGTACGAAC-AA
1 TTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGTACGAACTAA
* * *
13185809 AA-AATT-TGTGTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGATAATCGTTCATATAG
66 AACAATTAT-T-TTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAG
* *
13185872 TCTTAACTATTTGAACT
129 ACATAACTATTTGAACT
13185889 CATTTGGCAA
Statistics
Matches: 406, Mismatches: 84, Indels: 26
0.79 0.16 0.05
Matches are distributed among these distances:
356 1 0.00
357 5 0.01
358 198 0.49
359 74 0.18
360 8 0.02
361 95 0.23
362 24 0.06
363 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (358 bp):
TTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATAAGCTTGTACGAACTAA
AACAATTATTTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAGAC
ATAACTATTTGAACTTGTTCAATAAACAGATTTATTTTTTAAATCTCTTATTAATTTTTGAAAGA
TTAATAAATTAGTATTACTTTATTCTTAATAAACTTAAAGAATCAAAAACAGTTGTTATATGACC
AAACAAAAAGTAAGAACAATTTCAAATAAATAATTGTTGAAATAGCCATAACCATATAAAATGAT
TAAGTAAACATATTCACTTTTTAAATCACTTAC
Found at i:13186028 original size:358 final size:359
Alignment explanation
Indices: 13185370--13186041 Score: 782
Period size: 358 Copynumber: 1.9 Consensus size: 359
13185360 ACATGTTCAC
* * * *
13185370 TTTTTAAATCACTTACTTATTAATTTTTGGAATATTAATAAATTTGTATTATTTTATTTTGAATA
1 TTTTTAAATCACTTACTTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATA
* * * *** *
13185435 AGCTTGTACTATCTAAAACAATTATTTTATGACAAAACAAAAGGTCATAATTTTTTTAAATAGAC
66 AGCTTGTACGAACTAAAACAATTATTTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGAC
* * ** *
13185500 AATTGTTCAAATAGAAATAACTATTTGAATTTGTTCGATAAATAGATTTATTTTTTAAATATCTT
131 AATCGTTCAAATAGAAATAACTATTTGAACTCATTCGACAAATAGATTTATTTTTTAAATATCTT
* * * **
13185565 TCTTATTAATTTTTTAAAGTTAATAAATTAGTATTCATTTATTTTAAATAAACTTATATGAATTG
196 TCTTATTAATGTTTTAAAATTAATAAATTAGTATTCATTTATTTTAAATAAACATATATGAACAG
* * * * * *
13185630 AAATAGTTGTTTTATGACTAAACAAAAAGTAAGAATGATTTCAAATGGATAATTGTTTTAATAGT
261 AAACAATAGTTTGATGACAAAACAAAAAGTAAGAATGATTTCAAATAGATAATTGTTTTAATAGT
13185695 GTTAACCATATGAATTGATTAAAAGAAAAATTAT
326 GTTAACCATATGAATTGATTAAAAGAAAAATTAT
* * * *
13185729 TTTTTAAATCTCTTCCTTATTAATTTTTGAAATATTATTCAATTTGTATTATTTTAATCTAAATA
1 TTTTTAAATCACTTACTTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATA
13185794 AGCTTGTACGAAC-AAAA-AATT-TGTGTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAG
66 AGCTTGTACGAACTAAAACAATTAT-T-TTAAGACAAAACAAAAGGTCATAACAATTTGAAATAG
* * *** * * * * * *
13185856 ATAATCGTTCATATAGTCTTAACTATTTGAACTCATTTGGCAATTAGATTTATTTTTTAATTTTT
129 ACAATCGTTCAAATAGAAATAACTATTTGAACTCATTCGACAAATAGATTTATTTTTTAAATATC
* * * *
13185921 TTTGTTATTAA-GTTTTAGAATATTATTCAATTAGTATT-ATTT-TATTTCAATAAA-ATAGTAT
194 TTTCTTATTAATGTTTTA-AA-ATTAATAAATTAGTATTCATTTAT-TTTAAATAAACATA-TAT
* * * * *
13185982 GAACAGAACCAATAGTTTGATGACAAAACAAAAGGTTATAATGATTTGAAATAGATAATT
255 GAACAGAAACAATAGTTTGATGACAAAACAAAAAGTAAGAATGATTTCAAATAGATAATT
13186042 ATTCAAATAG
Statistics
Matches: 256, Mismatches: 51, Indels: 13
0.80 0.16 0.04
Matches are distributed among these distances:
356 1 0.00
357 13 0.05
358 160 0.62
359 82 0.32
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (359 bp):
TTTTTAAATCACTTACTTATTAATTTTTGAAATATTAATAAATTTGTATTATTTTAATCTAAATA
AGCTTGTACGAACTAAAACAATTATTTTAAGACAAAACAAAAGGTCATAACAATTTGAAATAGAC
AATCGTTCAAATAGAAATAACTATTTGAACTCATTCGACAAATAGATTTATTTTTTAAATATCTT
TCTTATTAATGTTTTAAAATTAATAAATTAGTATTCATTTATTTTAAATAAACATATATGAACAG
AAACAATAGTTTGATGACAAAACAAAAAGTAAGAATGATTTCAAATAGATAATTGTTTTAATAGT
GTTAACCATATGAATTGATTAAAAGAAAAATTAT
Found at i:13187041 original size:182 final size:181
Alignment explanation
Indices: 13186358--13187122 Score: 807
Period size: 181 Copynumber: 4.2 Consensus size: 181
13186348 AAATAATACG
* * * * * *
13186358 ATTTGAAATAGATAATTGTTCATATTGTCTTAACTGTTTGAA-TTGGTTCAAGAAACGTA-TTTT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTT-GTTCAATAAA--TAGATTT
* * * *
13186421 ATTTTTTAAATCTCTTAG-TAATGAA-TTTTCATAATATTATTAAATTAGTATTATTTTATTTCG
63 ATTTTTTAAATCTCTT-GCTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCG
** * * *
13186484 AATAAACTTGTATGAACAAAAATAATTGATTTATGACAAAACAAAAGCTTATAACA
126 AATAAACTTGTATGAACTGAAATAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * * *** *
13186540 ATTTGAAATAGATAA-TGTTCAAATAGTCATAACTATTTAAAATGGTTTGGTAAACAGATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAATAAATAGATTTATT
* * * *
13186604 TTTTAAA--TC-T-CTTACTAATTCTTGAAATATTAATTAATTAGTATTATTTTATTTCAAATAA
66 TTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
* * * * *
13186665 GCTTGTATG--CTGAGAAACAATGGTTTTATGACAAAATAAAAGGTAATAACA
131 ACTTGTATGAACT--GAAATAATTGTTTTATGACAAAACAAAAGGTCATAACA
* ** * * *
13186716 ATTTGAAATATATAATTGTTCAAACGGTCATAATTATTTGAAC-TGATTCGATAAATTGATTTAT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTG-TTCAATAAATAGATTTAT
* * * *
13186780 TTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAAGTAGTACTATTTTATTTTGGATA
65 TTTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * **
13186845 AACTTTTATGAACTGAAATAATTGTTTTATGAGAAAACAAAAGTTCATAATG
130 AACTTGTATGAACTGAAATAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * *
13186897 ATTTTAAATGGATAATTGTTCAAATAATCATAACTATTTGAACTTGTTCAATAAATAGATTTATT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAATAAATAGATTTATT
** * * *
13186962 TTTTCAAATCTCTTGCTTATTAATTTTTTTAATGTTAATAAATTAATATTATTTTATTTTGAATA
66 TTTT-AAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATA
* * * * *
13187027 AGCTTGTGTGAACTGAAATAATTGTTTTATGACTAATCAAAAGGTCAAAACA
130 AACTTGTATGAACTGAAATAATTGTTTTATGACAAAACAAAAGGTCATAACA
* * *
13187079 ATTTGAAATAAATAATTGTTCTAATAGTCTTAACTATTTGAACT
1 ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
13187123 AGTTTGGCAA
Statistics
Matches: 477, Mismatches: 90, Indels: 32
0.80 0.15 0.05
Matches are distributed among these distances:
174 1 0.00
176 91 0.19
177 49 0.10
178 2 0.00
179 3 0.01
180 14 0.03
181 164 0.34
182 151 0.32
183 2 0.00
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.43
Consensus pattern (181 bp):
ATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTCAATAAATAGATTTATT
TTTTAAATCTCTTGCTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCGAATAA
ACTTGTATGAACTGAAATAATTGTTTTATGACAAAACAAAAGGTCATAACA
Found at i:13187767 original size:180 final size:180
Alignment explanation
Indices: 13187194--13188863 Score: 1368
Period size: 181 Copynumber: 9.4 Consensus size: 180
13187184 AGATATGAAA
* * * * * *
13187194 AGAAACAATTATTCTATAACAAAA-TAAAGATCATAA-TGATTTGAGATAGATAATTGTTCAAAT
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAAT
** * *
13187257 AGTCA-AACTATTTGAACCAGTTCAGTAAATAGATTTATTTTTTAAATC--T-CTTAGTAATTTT
65 AGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTATTTTTTAAATCTTTACTTATTAATTTT
** * * * **
13187318 CAAAATTTTAATAAATCCA-TATTATTTTA-TTCGAAATAATTTTGTATGAAC-
130 TGAAATATTAATAAAT-TAGTATTATTTTATTTTG-AATAAGCTTGTATG-ACT
* ** * * *
13187369 AAAAACAATTGTTTTACAACAAAACAAAAAGGTCATAA-TCATTTGAAATAAATAATTATTCCAA
1 AGAAACAATTGTTTTATGACAAAAC-AAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAA
* * * ** * * * *
13187433 TAGACATGACTATTTGAATTTGTTTGGTATATAGATTTATTTTTTAAATCTCCTACCTATTAATT
64 TAGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTATTTTTTAAATCT-TTACTTATTAATT
* * *
13187498 TTT-AGAATATTAATAAATTAGTATTATTTTATTCT-AATAAACTTGTATGAAT
128 TTTGA-AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGACT
* * * * * * *
13187550 AAAAACAATTGTTTGATCACCAAACAAAAGATCATAACTATTTGAAATAAATAATTATTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
* * * *
13187615 GTC-TAACTATTAGAGCTTGCTT-GGTAAATAGATTTATTTTTTAAATCATTTACTTATTAATTT
66 GTCATAACTATTTGAACTTG-TTCAGTAAACAGATTTATTTTTTAAATC-TTTACTTATTAATTT
13187678 TTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGACT
129 TTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGACT
* * *
13187730 AGAAACAATTGGTTTATGACAAAACAAAACGTCATAACTATTTGAAATAGATAATTATTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
* * * *
13187795 GTCATAACTATTTGAA-TGTGTTCAGAAAATAGATTTATTTTTTAAATTTTTTCTTATTAATTTT
66 GTCATAACTATTTGAACT-TGTTCAGTAAACAGATTTATTTTTTAAATCTTTACTTATTAATTTT
* *
13187859 TGAAATATTAATAAATTTA-TATTATTTTA-TTTGAAATAAGTTTATATGAAC-
130 TGAAATATTAATAAA-TTAGTATTATTTTATTTTG-AATAAGCTTGTATG-ACT
* ** * * *
13187910 AGAAATAATTAATTTATGACAAAACAAAAGGTCA-AAATGGTTTGAAATCGATAATTGTTCAAAT
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAAT
* * * *
13187974 AGTCATAACTATTTGAACTTTTTTAGTAAACAGATTCATTTTTTAAATCTCTTACTCATTAATTT
65 AGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTATTTTTTAAATCT-TTACTTATTAATTT
* * * *
13188039 TT-AGAATATTAATAAATTAGTGTTATTTTATTTCGAATAAGCTTATATAAACT
129 TTGA-AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTAT-GACT
* * * * * * * *
13188092 A-ATATAGTTGCTTTATTACAAAACAAAAGGTCATAACGATTTGAAATAGATAACTATTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
* * * * *
13188156 GTTATGACTATTTGGACTTGTTC-GATAAACATATTTATTTTTAAAATCTTTTACTTATT-ATTT
66 GTCATAACTATTTGAACTTGTTCAG-TAAACAGATTTATTTTTTAAATC-TTTACTTATTAATTT
** * * *
13188219 GTCAAAATATTAATAAATTAATATTATTTTAATTTGAATAAGCTAGTATGAAC-
129 -TTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATG-ACT
* * * * * * *
13188272 AAAAATAGTTGTTTTATGACAAAATAAAAAGTCATAA-TGATTTAAAATAAATAATTGTTCAAAT
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACT-ATTTGAAATAGATAATTGTTCAAAT
* * ** * *
13188336 TGTCATAACTATTTGAACTTATTTGGTAAACAAATTTATTTTTTAAATCTTTTACTTTTTAATTG
65 AGTCATAACTATTTGAACTTGTTCAGTAAACAGATTTATTTTTTAAATC-TTTACTTATTAATT-
* * * * *
13188401 TTTG-AATATTAATAAATTTGTGTTATTTTATTTGGAATAAACTTGT-TCGAAT
128 TTTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTAT-GACT
* *** * * * * *
13188453 TGAAATTTTTGTTTTATAACAAAACAAAAGGTTATAGCGATTTGAAAAAGATAATTGTTCAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
* * * *
13188518 GTCGTAAGTATTTG-ACTTTGTTCAGTAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTT
66 GTCATAACTATTTGAAC-TTGTTCAGTAAACAGATTTATTTTTTAAATCT-TTACTTATTAATTT
* ** * * * * * * *
13188582 TTGGAATATTAATATGTTAGAATTATATTGTTTCGAATAAGGTTGTACGAAT
129 TTGAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGACT
* * * * * * *
13188634 AGAAACAATTGATTTGTGATAAAACAAAAGGTTATAACGATTTAAAATAGATAATTGTTCAAAAA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
* * * *
13188699 G---T--C-A---GAAC-----C----AACAGATTCAATTTTTAAATTCGTTGCTTATTAA-TTT
66 GTCATAACTATTTGAACTTGTTCAGTAAACAGATTTATTTTTTAAA-TCTTTACTTATTAATTTT
* ** * *
13188745 TCAGAATATTAATAAATTAGTATTCCTTTATTCTGAATAAGAC-CGTATGAAC-
130 TGA-AATATTAATAAATTAGTATTATTTTATTTTGAATAAG-CTTGTATG-ACT
* * * * *
13188797 ATAAACAATTGTTTTATGACAAAACAAATGGTCATAACAATTTGAAATAAATAATTGTTAAAATA
1 AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
13188862 GT
66 GT
13188864 ACAAAACAAA
Statistics
Matches: 1227, Mismatches: 214, Indels: 119
0.79 0.14 0.08
Matches are distributed among these distances:
162 4 0.00
163 114 0.09
164 3 0.00
167 1 0.00
172 1 0.00
173 2 0.00
175 21 0.02
177 36 0.03
178 37 0.03
179 86 0.07
180 286 0.23
181 589 0.48
182 45 0.04
183 2 0.00
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (180 bp):
AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATA
GTCATAACTATTTGAACTTGTTCAGTAAACAGATTTATTTTTTAAATCTTTACTTATTAATTTTT
GAAATATTAATAAATTAGTATTATTTTATTTTGAATAAGCTTGTATGACT
Found at i:13187788 original size:17 final size:18
Alignment explanation
Indices: 13187762--13187810 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
13187752 AACAAAACGT
13187762 CATAACTATTTGAAATAG
1 CATAACTATTTGAAATAG
* *
13187780 -ATAATTA-TTCAAATAG
1 CATAACTATTTGAAATAG
13187796 TCATAACTATTTGAA
1 -CATAACTATTTGAA
13187811 TGTGTTCAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
16 8 0.33
17 6 0.25
18 6 0.25
19 4 0.17
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (18 bp):
CATAACTATTTGAAATAG
Found at i:13188123 original size:181 final size:181
Alignment explanation
Indices: 13187219--13188702 Score: 1370
Period size: 181 Copynumber: 8.2 Consensus size: 181
13187209 ATAACAAAAT
* * * *** *
13187219 AAAGATCATAATGATTTGAGATAGATAATTGTTCAAATAGTCA-AACTATTTGAACCAGTTCAGT
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTTTTTAGT
* * * * * *
13187283 AAATAGATTTATTTTTTAAA--TC-T-CTTAGTAATTTTCAAAATTTTAATAAATCCA-TATTAT
66 AAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAAT-TAGTATTAT
** * * **
13187343 TTTA-TTCGAAATAATTTTGTATGAACAAAAACAATTGTTTTACAACAAAACAA
130 TTTATTTCG-AATAAGCTTGTATGAACTAAAATAATTGTTTTATGACAAAAC-A
* * * * * *
13187396 AAAGGTCATAATCATTTGAAATAAATAATTATTCCAATAGACATGACTATTTGAA-TTTGTTTGG
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTT-TTTAG
* * * *
13187460 TATATAGATTTATTTTTTAAATCTCCTACCTATTAATTTTTAGAATATTAATAAATTAGTATTAT
65 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
* * * * * *
13187525 TTTA-TTCTAATAAACTTGTATGAA-TAAAAACAATTGTTTGATCACCAAACA
130 TTTATTTCGAATAAGCTTGTATGAACT-AAAATAATTGTTTTATGACAAAACA
* * * * ** *
13187576 AAAGATCATAACT-ATTTGAAATAAATAATTATTCAAATAGTC-TAACTATTAGAGCTTGCTTGG
1 AAAGGTCATAA-TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTTTTTAG
*
13187639 TAAATAGATTTATTTTTTAAATCAT-TTACTTATTAATTTTT-GAAATATTAATAAATTAGTATT
65 TAAACAGATTTATTTTTTAAATC-TCTTACTTATTAATTTTTAG-AATATTAATAAATTAGTATT
* * *
13187702 ATTTTATTTTGAATAAGCTTGTATG-ACTAGAAACAATTGGTTTATGACAAAACA
128 ATTTTATTTCGAATAAGCTTGTATGAACTA-AAATAATTGTTTTATGACAAAACA
* * *
13187756 AAACGTCATAACT-ATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA-TGTGTTCA
1 AAAGGTCATAA-TGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACT-TTTTTA
* * * *
13187819 GAAAATAGATTTATTTTTTAAAT-TTTTTCTTATTAATTTTT-GAAATATTAATAAATTTA-TAT
64 GTAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAG-AATATTAATAAA-TTAGTAT
* * **
13187881 TATTTTATTT-GAAATAAGTTTATATGAAC-AGAAATAATTAATTTATGACAAAACA
127 TATTTTATTTCG-AATAAGCTTGTATGAACTA-AAATAATTGTTTTATGACAAAACA
* * * *
13187936 AAAGGTCAAAATGGTTTGAAATCGATAATTGTTCAAATAGTCATAACTATTTGAACTTTTTTAGT
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTTTTTAGT
* * *
13188001 AAACAGATTCATTTTTTAAATCTCTTACTCATTAATTTTTAGAATATTAATAAATTAGTGTTATT
66 AAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATT
* * * * * *
13188066 TTATTTCGAATAAGCTTATATAAACTAATATAGTTGCTTTATTACAAAACA
131 TTATTTCGAATAAGCTTGTATGAACTAAAATAATTGTTTTATGACAAAACA
* * * * * * *
13188117 AAAGGTCATAACGATTTGAAATAGATAACTATTCAAATAGTTATGACTATTTGGAC-TTGTTCGA
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTTTTTAG-
* * * * * *
13188181 TAAACATATTTATTTTTAAAATCTTTTACTTATT-ATTTGTCAAAATATTAATAAATTAATATTA
65 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTT-TTAGAATATTAATAAATTAGTATTA
* * * *
13188245 TTTTAATTT-GAATAAGCTAGTATGAACAAAAATAGTTGTTTTATGACAAAATA
129 TTTT-ATTTCGAATAAGCTTGTATGAACTAAAATAATTGTTTTATGACAAAACA
* * * * * * *
13188298 AAAAGTCATAATGATTTAAAATAAATAATTGTTCAAATTGTCATAACTATTTGAACTTATTTGGT
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTTTTTAGT
* * * * *
13188363 AAACAAATTTATTTTTTAAATCTTTTACTTTTTAATTGTTT-GAATATTAATAAATTTGTGTTAT
66 AAACAGATTTATTTTTTAAATCTCTTACTTATTAATT-TTTAGAATATTAATAAATTAGTATTAT
* * * * ** *
13188427 TTTATTTGGAATAAACTTGT-TCGAATTGAAATTTTTGTTTTATAACAAAACA
130 TTTATTTCGAATAAGCTTGTAT-GAACTAAAATAATTGTTTTATGACAAAACA
* ** * * * * *
13188479 AAAGGTTATAGCGATTTGAAAAAGATAATTGTTCAAATAGTCGTAAGTATTTG-ACTTTGTTCAG
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTT-TTTAG
* * * ** *
13188543 TAAACAAATTCATTTTTTAAATCTCTTACTTATTAATTTTTGGAATATTAATATGTTAGAATTAT
65 TAAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTAT
* * * * * * * *
13188608 ATTGTTTCGAATAAGGTTGTACGAA-TAGAAACAATTGATTTGTGATAAAACA
130 TTTATTTCGAATAAGCTTGTATGAACTA-AAATAATTGTTTTATGACAAAACA
* * * * *
13188660 AAAGGTTATAACGATTTAAAATAGATAATTGTTCAAAAAGTCA
1 AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCA
13188703 GAACCAACAG
Statistics
Matches: 1087, Mismatches: 180, Indels: 76
0.81 0.13 0.06
Matches are distributed among these distances:
177 36 0.03
178 34 0.03
179 80 0.07
180 293 0.27
181 592 0.54
182 51 0.05
183 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
AAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTTTTTAGT
AAACAGATTTATTTTTTAAATCTCTTACTTATTAATTTTTAGAATATTAATAAATTAGTATTATT
TTATTTCGAATAAGCTTGTATGAACTAAAATAATTGTTTTATGACAAAACA
Found at i:13188888 original size:49 final size:48
Alignment explanation
Indices: 13188815--13188957 Score: 189
Period size: 49 Copynumber: 3.0 Consensus size: 48
13188805 TTGTTTTATG
* *
13188815 ACAAAACAAATGGTCATAACAATTTGAAATAAATAATTGTTAAAATAGT
1 ACAAAACAAAAGGTTAT-ACAATTTGAAATAAATAATTGTTAAAATAGT
*
13188864 ACAAAACAAAAGGTTATTATAATTTGAAATAAATAATTGTTAAAATAGT
1 ACAAAACAAAAGGTTA-TACAATTTGAAATAAATAATTGTTAAAATAGT
* * ** *
13188913 ACAGAATAAAAGGTTA-ACAATTTGAAATATCTAATTGTTCAAATA
1 ACAAAACAAAAGGTTATACAATTTGAAATAAATAATTGTTAAAATA
13188958 ATCATAACTA
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
47 25 0.30
49 58 0.69
50 1 0.01
ACGTcount: A:0.52, C:0.07, G:0.10, T:0.31
Consensus pattern (48 bp):
ACAAAACAAAAGGTTATACAATTTGAAATAAATAATTGTTAAAATAGT
Found at i:13189602 original size:180 final size:178
Alignment explanation
Indices: 13189255--13190556 Score: 468
Period size: 180 Copynumber: 7.3 Consensus size: 178
13189245 TTTTATGAAT
* * * * *
13189255 TGAAACAATTGTTTCATGATAAAATAAAAGGTCATAACGATTTTAAATAGATAATTGTTCAAATA
1 TGAAACAATTATTTCATGATAAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCAAATA
* * * * * * * *
13189320 GTCAAAACTATTTGAACTTGTTTGGTAAACATATGGTTTTTAATTTCTTACTTATTAATTTTTTG
66 GTCAAAACTATTTGAACTGGTTCGGCAAACATATAGTTTTTAAATCCTTACTTATTAATGTTTAG
* * * ***
13189385 AATATTAATAAATTAGTATTATTTTATTTTGAATAAGCATGTATGAGC
131 AATATTAATAAATTAGCAATATTTTACTCAAAATAAGCATGTATGAGC
* * * * **
13189433 TGAAGCAATTATTTTATGATTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTATTTTAATA
1 TGAAACAATTATTTCATGATAAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCAAATA
** * *
13189498 GTCTTAACTATTTGAACTGGTTCGGCAAACAAATTTATTTTTTAAATCCTTACTTATTAATGTTT
66 GTCAAAACTATTTGAACTGGTTCGGCAAAC--ATATAGTTTTTAAATCCTTACTTATTAATGTTT
* * * *
13189563 AGAATATTATTAATTTAGCAATATTTTACTCAAAATAAGCTTGTATGA-A
129 AGAATATTAATAAATTAGCAATATTTTACTCAAAATAAGCATGTATGAGC
* * * * * * * * * * * *
13189612 TAGAAAAAAATGTTTTAGGACAAAA-AAAAGATCATAAA-GATTTTAGATAGATAACTGTTAAAA
1 T-GAAACAATTATTTCATGATAAAACAAAAGGTCA-AAACGATTTGAAATAGATAATTATTCAAA
*** * * * * * * * *
13189675 TAGTTGTAACTATTTAAACTAGTTAGGTAAAAAGATTTAGGTTTTAGAT-C-T-CTTATTAAT-T
64 TAGTCAAAACTATTTGAACTGGTTCGG--CAAACATATAGTTTTTAAATCCTTACTTATTAATGT
* * * * * * *** *
13189736 TTTGAAATAGTAATAAATTAGTACTATTTTA-TTATGAATAATTTTGTATGA-A
127 TTAG-AATATTAATAAATTAGCAATATTTTACTCA-AAATAAGCATGTATGAGC
* * * * * *
13189788 TAGAAACAATTGTTTTATGACAAAACAAAATGTCATAATGATTTGAAATAGATAA-TAGTTCAAA
1 T-GAAACAATTATTTCATGATAAAACAAAAGGTCAAAACGATTTGAAATAGATAATTA-TTCAAA
* * ** * * * * *
13189852 TGGACATGACTATTTGAACTTGTTC--AAAAAATAGGTTAATGTTTT-AATTCTTCAACTTATTA
64 TAGTCAAAACTATTTGAACTGGTTCGGCAAACATA---TAGT-TTTTAAATCCTT--ACTTATTA
* * * * *
13189914 ATTTTTAGAATATTAATAAATTA--AATTATTTTATTTC-AAATAAACTTGTATGA-A
123 ATGTTTAGAATATTAATAAATTAGCAA-TATTTTA-CTCAAAATAAGCATGTATGAGC
* * * * * * *
13189968 TAGAAACAATTCTTTTATGAAAAAAC-AAAGGATCATAACAATTTGAAATAAATAATTGTTCAAA
1 T-GAAACAATTATTTCATGATAAAACAAAAGG-TCAAAACGATTTGAAATAGATAATTATTCAAA
* * * * ** * * * ** *
13190032 TAATCATAACTATTTGAACTCGCTCGATAAATGGATTTA-TTTTAAAAATATTTTACTTGTTAAT
64 TAGTCAAAACTATTTGAACTGGTTCGGCAAA--CATATAGTTTT-TAAAT-CCTTACTTATTAAT
* * * * * *** * * * *
13190096 -TTTGGAATATTAATAAATGAGTATTATTTTATTTTGAATAATG-TTTTTTGA-A
125 GTTTAGAATATTAATAAATTAGCAATATTTTACTCAAAATAA-GCATGTATGAGC
* * * * *
13190148 TAGAAACAATTGGTTT-ATGACAAAACAAATGGTCACAACGATTTGAAATAGATAATTGTTCAAA
1 T-GAAACAATT-ATTTCATGATAAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCAAA
* * *** * * **
13190212 TAGTTATAACTATTTGAACAT-GTTCAAAAAATAAATTTA-TTTTTAAAATTTTTACTTATTAAT
64 TAGTCAAAACTATTTGAAC-TGGTTC-GGCAA-ACATATAGTTTTT-AAATCCTTACTTATTAAT
* * * * *** * ** *
13190275 TTTTAGAACATTAATAAATTTA-TATTATTTTA-TTTGAATAAGCTTGCCTGAAC
125 GTTTAGAATATTAATAAA-TTAGCAATATTTTACTCAAAATAAGCATGTATGAGC
* * * * * * * * * *
13190328 -AAAATCAATTGTTTTATGACAAAACAAAAGGTCATAATGTTTTGAAATAGATAATTGTTTAGAT
1 TGAAA-CAATTATTTCATGATAAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCAAAT
* * * * *
13190392 AGTCATAACTATTTGAACTTTGTTCGGCAAACAGATTTATTTTTTTAATTCTCTTACTCT-TTAA
65 AGTCAAAACTATTTGAAC-TGGTTCGGCAAAC--ATATA-GTTTTTAAATC-CTTACT-TATTAA
* * * * * * ** **
13190456 T-TTTTGAAATATTAATAAATTAGTATTATTTTATTTAAAATAAGCTTACATGAAT
124 TGTTTAG-AATATTAATAAATTAGCAATATTTTACTCAAAATAAGCATGTATGAGC
* * * * * * *
13190511 TGAAACAATTGTTTTATTACAAAACAAACGGTCACAATGATTTGAA
1 TGAAACAATTATTTCATGATAAAACAAAAGGTCAAAACGATTTGAA
13190557 GTAAACATAT
Statistics
Matches: 891, Mismatches: 173, Indels: 115
0.76 0.15 0.10
Matches are distributed among these distances:
173 6 0.01
175 6 0.01
176 73 0.08
177 49 0.05
178 90 0.10
179 185 0.21
180 319 0.36
181 56 0.06
182 48 0.05
183 54 0.06
184 5 0.01
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.40
Consensus pattern (178 bp):
TGAAACAATTATTTCATGATAAAACAAAAGGTCAAAACGATTTGAAATAGATAATTATTCAAATA
GTCAAAACTATTTGAACTGGTTCGGCAAACATATAGTTTTTAAATCCTTACTTATTAATGTTTAG
AATATTAATAAATTAGCAATATTTTACTCAAAATAAGCATGTATGAGC
Done.