Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 74 of 133
Found at i:14590769 original size:18 final size:18
Alignment explanation
Indices: 14590748--14590782 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14590738 TTGCATTCGC
14590748 ATTGACATTTACATTCAT
1 ATTGACATTTACATTCAT
* *
14590766 ATTGATATTTGCATTCA
1 ATTGACATTTACATTCA
14590783 CATCATTTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.09, T:0.46
Consensus pattern (18 bp):
ATTGACATTTACATTCAT
Found at i:14590871 original size:21 final size:20
Alignment explanation
Indices: 14590844--14590888 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
14590834 GTAAATATTA
14590844 AAAAAAAAAACAGAACAAAAAG
1 AAAAAAAAAA-AGAA-AAAAAG
*
14590866 AAAAAAAAAAAGAAAAAATG
1 AAAAAAAAAAAGAAAAAAAG
14590886 AAA
1 AAA
14590889 GGTAAAGGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 8 0.36
21 4 0.18
22 10 0.45
ACGTcount: A:0.84, C:0.04, G:0.09, T:0.02
Consensus pattern (20 bp):
AAAAAAAAAAAGAAAAAAAG
Found at i:14591234 original size:49 final size:49
Alignment explanation
Indices: 14591145--14591551 Score: 398
Period size: 49 Copynumber: 8.3 Consensus size: 49
14591135 GCAAAGCATT
* * *
14591145 ACAAGATTTTAAAGTTTCAATGCCTCTGTTTGGGGA-GAGCCATTTTCAA
1 ACAAGATTTTAAAGTTTCAAAGCCTCTATTT-AGGATGAGCCATTTTCAA
* * *
14591194 ACAAGATTTTAAAGTTTCAACGCCT-TAGCTTAGGATGAGCCATTTTCAC
1 ACAAGATTTTAAAGTTTCAAAGCCTCTA-TTTAGGATGAGCCATTTTCAA
* * * * * ** * *
14591243 ACAAGATTTTAAAATTTTAAAGCCTTTGTTTGGGAAAAGTCATTTTTAA
1 ACAAGATTTTAAAGTTTCAAAGCCTCTATTTAGGATGAGCCATTTTCAA
* *
14591292 ACAAGATTTTAAAGTTTCAAAGCCTCTATATAGGATGAGCCATTTTCAT
1 ACAAGATTTTAAAGTTTCAAAGCCTCTATTTAGGATGAGCCATTTTCAA
* * * *
14591341 ATAAGATTTTTTAAAAGTTTCAAAGCCTCTATTTGGGAGGAGCCATTTTCAC
1 ACAAGA--TTTT-AAAGTTTCAAAGCCTCTATTTAGGATGAGCCATTTTCAA
* *
14591393 ACAAGATTTTAAAGTTTCAAAGCCTTTTTTTAGGATGAGCCATTTT-AA
1 ACAAGATTTTAAAGTTTCAAAGCCTCTATTTAGGATGAGCCATTTTCAA
* * * *
14591441 TATAAGATTTTAAAGTTTCCATGCCTCTATTTAAGG-GGAGCCATTTTCAA
1 -ACAAGATTTTAAAGTTTCAAAGCCTCTATTT-AGGATGAGCCATTTTCAA
* * * *
14591491 ATAAGGTTTTAAAGTTTCAAAGCCTTTATTTATGGA--ATGCTATTTTCAA
1 ACAAGATTTTAAAGTTTCAAAGCCTCTATTTA-GGATGA-GCCATTTTCAA
14591540 AC-A-ATTTTAAAG
1 ACAAGATTTTAAAG
14591552 AAGTAAAGTA
Statistics
Matches: 295, Mismatches: 51, Indels: 26
0.79 0.14 0.07
Matches are distributed among these distances:
47 8 0.03
48 8 0.03
49 225 0.76
50 10 0.03
51 4 0.01
52 40 0.14
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (49 bp):
ACAAGATTTTAAAGTTTCAAAGCCTCTATTTAGGATGAGCCATTTTCAA
Found at i:14591503 original size:199 final size:197
Alignment explanation
Indices: 14591151--14591515 Score: 482
Period size: 199 Copynumber: 1.8 Consensus size: 197
14591141 CATTACAAGA
* * *
14591151 TTTTAAAGTTTCAATGCCTCTGTTTGGGGAGAGCCATTTTCAAACAAGATTTTAAAGTTTCAACG
1 TTTTAAAGTTTCAAAGCCTCTATTTGGGGAGAGCCATTTTCAAACAAGATTTTAAAGTTTCAAAG
* * * *
14591216 CCTTAGCTTAGGATGAGCCATTTTCACACAAGATTTTAAAATTTTAAAGCCTTTGTTTGGGAAAA
66 CCTTAGCTTAGGATGAGCCATTTTAACACAAGATTTTAAAATTTCAAAGCCTCTATTTGGG-AAA
* *
14591281 GTCATTTTTAAACAAGATTTTAAAGTTTCAAAGCCTCTATATAGGATGAGCCATTTTCATATAAG
130 GCCATTTTCAAACAAGATTTTAAAGTTTCAAAGCCTCTATATAGGATGAGCCATTTTCATATAAG
14591346 ATT
195 ATT
*
14591349 TTTTAAAAGTTTCAAAGCCTCTATTT-GGGAGGAGCCATTTTCACACAAGATTTTAAAGTTTCAA
1 TTTT-AAAGTTTCAAAGCCTCTATTTGGGGA-GAGCCATTTTCAAACAAGATTTTAAAGTTTCAA
*** * * * * *
14591413 AGCCTTTTTTTAGGATGAGCCATTTTAATATAAGATTTTAAAGTTTCCATGCCTCTATTTAAGGG
64 AGCCTTAGCTTAGGATGAGCCATTTTAACACAAGATTTTAAAATTTCAAAGCCTCTATTT--GGG
* * *
14591478 -GAGCCATTTTCAAATAAGGTTTTAAAGTTTCAAAGCCT
127 AAAGCCATTTTCAAACAAGATTTTAAAGTTTCAAAGCCT
14591516 TTATTTATGG
Statistics
Matches: 142, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
198 8 0.06
199 131 0.92
201 3 0.02
ACGTcount: A:0.32, C:0.15, G:0.16, T:0.37
Consensus pattern (197 bp):
TTTTAAAGTTTCAAAGCCTCTATTTGGGGAGAGCCATTTTCAAACAAGATTTTAAAGTTTCAAAG
CCTTAGCTTAGGATGAGCCATTTTAACACAAGATTTTAAAATTTCAAAGCCTCTATTTGGGAAAG
CCATTTTCAAACAAGATTTTAAAGTTTCAAAGCCTCTATATAGGATGAGCCATTTTCATATAAGA
TT
Found at i:14592560 original size:143 final size:143
Alignment explanation
Indices: 14592300--14592564 Score: 333
Period size: 144 Copynumber: 1.9 Consensus size: 143
14592290 TTGAAAAGTG
* * ** * **
14592300 TAAAATTACCAAAATACCCTTTTGAGGTATTTTCGTAATTTGACTATCCAAGTTTGATTTTTCGT
1 TAAAATTACCAAAATACCCTTTTAAGGTATTTTCGTAATTTGACTATCCAAGCTCAAATTTTCAC
* * * *
14592365 GAAACTTTTTAGATCATAATTTTACAGTATTTGATGTATTTTGGTGCATTTAAAATCGCAACAGT
66 AAAAATTTTTAGATCATAATTTTACAATATTTCATGTATTTTGGTGCATTTAAAATCGCAACAGT
14592430 ACCTCGAGAGGTA
131 ACCTCGAGAGGTA
* *
14592443 TAAAATTACCAAAATACCC-TTTAAGGCTATTTTTGTAATTTGGCCT-TCCCAAGCTCAAATTTT
1 TAAAATTACCAAAATACCCTTTTAAGG-TATTTTCGTAATTT-GACTAT-CCAAGCTCAAATTTT
14592506 CACAAAAATTTTTAGATC-TCAATTTTACAATATTTCATG-ATTTTTGGTGC-TTTAAAATC
63 CACAAAAATTTTTAGATCAT-AATTTTACAATATTTCATGTA-TTTTGGTGCATTTAAAATC
14592565 CTAAAAATGA
Statistics
Matches: 104, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
142 6 0.06
143 44 0.42
144 54 0.52
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.40
Consensus pattern (143 bp):
TAAAATTACCAAAATACCCTTTTAAGGTATTTTCGTAATTTGACTATCCAAGCTCAAATTTTCAC
AAAAATTTTTAGATCATAATTTTACAATATTTCATGTATTTTGGTGCATTTAAAATCGCAACAGT
ACCTCGAGAGGTA
Found at i:14594356 original size:7 final size:7
Alignment explanation
Indices: 14594340--14594389 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
14594330 CTATTTTCTA
14594340 AAAAATT
1 AAAAATT
*
14594347 AAAGATT
1 AAAAATT
14594354 AAAAATT
1 AAAAATT
*
14594361 -AGAATT
1 AAAAATT
14594367 AAAAAATT
1 -AAAAATT
14594375 AAAACATT
1 AAAA-ATT
14594383 AAAAATT
1 AAAAATT
14594390 GGAATTAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
6 5 0.14
7 19 0.53
8 12 0.33
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (7 bp):
AAAAATT
Found at i:14594359 original size:14 final size:13
Alignment explanation
Indices: 14594340--14594404 Score: 60
Period size: 14 Copynumber: 4.8 Consensus size: 13
14594330 CTATTTTCTA
14594340 AAAAATTAAAGATT
1 AAAAATTAAA-ATT
*
14594354 AAAAATTAGAATT
1 AAAAATTAAAATT
14594367 AAAAAATTAAAACATT
1 -AAAAATT-AAA-ATT
**
14594383 AAAAATTGGAATT
1 AAAAATTAAAATT
14594396 -AAAATTAAA
1 AAAAATTAAA
14594405 TAATAAGGAA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
12 7 0.17
13 6 0.14
14 17 0.40
15 9 0.21
16 3 0.07
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.28
Consensus pattern (13 bp):
AAAAATTAAAATT
Found at i:14594374 original size:28 final size:29
Alignment explanation
Indices: 14594338--14594399 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
14594328 AACTATTTTC
*
14594338 TAAAAAATT-AAAGATTAAAAATTAGAAT
1 TAAAAAATTAAAACATTAAAAATTAGAAT
*
14594366 TAAAAAATTAAAACATTAAAAATTGGAAT
1 TAAAAAATTAAAACATTAAAAATTAGAAT
14594395 TAAAA
1 TAAAA
14594400 TTAAATAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (29 bp):
TAAAAAATTAAAACATTAAAAATTAGAAT
Found at i:14597070 original size:18 final size:18
Alignment explanation
Indices: 14597036--14597091 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
14597026 TAATAAAACC
14597036 AAAAAATAAAAAA--TGA
1 AAAAAATAAAAAAGTTGA
* * *
14597052 AAAAAGTGAAAAATTTGA
1 AAAAAATAAAAAAGTTGA
14597070 AAAAAATAAAAAAGTTGA
1 AAAAAATAAAAAAGTTGA
14597088 AAAA
1 AAAA
14597092 TAATTAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
16 11 0.33
18 22 0.67
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (18 bp):
AAAAAATAAAAAAGTTGA
Found at i:14599375 original size:24 final size:24
Alignment explanation
Indices: 14599328--14599380 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
14599318 TTATCTTCAG
14599328 ATTTATTTTACTTTTATTTCAAAA
1 ATTTATTTTACTTTTATTTCAAAA
* *
14599352 TTTTATTTT-TTTTTATTTCTAAAA
1 ATTTATTTTACTTTTATTTC-AAAA
14599376 ATTTA
1 ATTTA
14599381 ACATTTCTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (24 bp):
ATTTATTTTACTTTTATTTCAAAA
Found at i:14601350 original size:53 final size:53
Alignment explanation
Indices: 14601292--14601404 Score: 147
Period size: 53 Copynumber: 2.1 Consensus size: 53
14601282 TTCATATTTT
*
14601292 AAAGATTCGT-AAAATTCAAAAATTTGTAAGATTTCAAAAGCTTGCAAGAATTG
1 AAAGATTCGTAAAAATTCAAAAATTTGCAAGATTTCAAAA-CTTGCAAGAATTG
* * ** * *
14601345 AAAGATTCGTAAAAATTCAAAGATTTGCAATATTTTTAAATTTGTAAGAATTG
1 AAAGATTCGTAAAAATTCAAAAATTTGCAAGATTTCAAAACTTGCAAGAATTG
14601398 AAAGATT
1 AAAGATT
14601405 TACAAGATTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
53 28 0.54
54 24 0.46
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (53 bp):
AAAGATTCGTAAAAATTCAAAAATTTGCAAGATTTCAAAACTTGCAAGAATTG
Found at i:14601366 original size:18 final size:18
Alignment explanation
Indices: 14601292--14601369 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 18
14601282 TTCATATTTT
14601292 AAAGATTCGT-AAAATTC
1 AAAGATTCGTAAAAATTC
* * * *
14601309 AAAAATTTGTAAGATTTC
1 AAAGATTCGTAAAAATTC
* * * *
14601327 AAAAGCTT-GCAAGAATTG
1 -AAAGATTCGTAAAAATTC
14601345 AAAGATTCGTAAAAATTC
1 AAAGATTCGTAAAAATTC
14601363 AAAGATT
1 AAAGATT
14601370 TGCAATATTT
Statistics
Matches: 45, Mismatches: 13, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
17 14 0.31
18 26 0.58
19 5 0.11
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.29
Consensus pattern (18 bp):
AAAGATTCGTAAAAATTC
Found at i:14601494 original size:49 final size:49
Alignment explanation
Indices: 14601404--14601497 Score: 116
Period size: 49 Copynumber: 1.9 Consensus size: 49
14601394 ATTGAAAGAT
* * * **
14601404 TTACAAGATTTTCATATTCACAAGAACTTATATTCGTAAGAATTTAATA
1 TTACAAAATTTTCAGATTCACAAGAACTCATATTCACAAGAATTTAATA
* * *
14601453 TTACAAAATTTTTAGATTTACAAGAACTCATGTTCACAAGAATTT
1 TTACAAAATTTTCAGATTCACAAGAACTCATATTCACAAGAATTT
14601498 TCATATTCGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
49 37 1.00
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (49 bp):
TTACAAAATTTTCAGATTCACAAGAACTCATATTCACAAGAATTTAATA
Found at i:14601538 original size:17 final size:17
Alignment explanation
Indices: 14601493--14601539 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
14601483 TGTTCACAAG
*
14601493 AATTTTCATATTCGTAAA
1 AATTTT-ATATTCGCAAA
*
14601511 AA-TTTAGATTCGCAAA
1 AATTTTATATTCGCAAA
14601527 AATTTTATATTCG
1 AATTTTATATTCG
14601540 TAAGAACTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 11 0.44
17 12 0.48
18 2 0.08
ACGTcount: A:0.38, C:0.11, G:0.09, T:0.43
Consensus pattern (17 bp):
AATTTTATATTCGCAAA
Found at i:14601538 original size:33 final size:34
Alignment explanation
Indices: 14601493--14601558 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 34
14601483 TGTTCACAAG
*
14601493 AATTTTCATATTCGTAAAAATTTAGATTCGCAAA
1 AATTTTCATATTCGTAAAAACTTAGATTCGCAAA
* *
14601527 AATTTT-ATATTCGTAAGAACTTAGATTTGCAA
1 AATTTTCATATTCGTAAAAACTTAGATTCGCAA
14601559 GACACAAAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 23 0.79
34 6 0.21
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (34 bp):
AATTTTCATATTCGTAAAAACTTAGATTCGCAAA
Found at i:14602223 original size:24 final size:24
Alignment explanation
Indices: 14602195--14602246 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
14602185 AAAATTCAAT
14602195 GATTCTCATTTAAGAA-ATT-TTAAA
1 GATTCTCATTT--GAATATTCTTAAA
14602219 GATTCTCATTTGAATATTCTTAAA
1 GATTCTCATTTGAATATTCTTAAA
14602243 GATT
1 GATT
14602247 ATACACAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.12
23 3 0.12
24 20 0.77
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (24 bp):
GATTCTCATTTGAATATTCTTAAA
Found at i:14605235 original size:65 final size:68
Alignment explanation
Indices: 14605117--14605245 Score: 210
Period size: 65 Copynumber: 1.9 Consensus size: 68
14605107 ATTATTTCTA
*
14605117 AAAATTTAACATTTCTGTCTTTATTATTTATTATACTTAAAAACTATCGTTATTAAAATTTTATT
1 AAAATTTAACATTTCTGTCTTTATTATTTATTATACTTAAAAACTATCATTATTAAAATTTTATT
14605182 ATT
66 ATT
* *
14605185 AAAATTTAACATTT-T-TTTTTATTATTTA-TATGCTTAAAAACTATCATTATTAAAATTTTAT
1 AAAATTTAACATTTCTGTCTTTATTATTTATTATACTTAAAAACTATCATTATTAAAATTTTAT
14605246 CTAATTTTGT
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
65 31 0.53
66 12 0.21
67 1 0.02
68 14 0.24
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (68 bp):
AAAATTTAACATTTCTGTCTTTATTATTTATTATACTTAAAAACTATCATTATTAAAATTTTATT
ATT
Found at i:14610037 original size:153 final size:153
Alignment explanation
Indices: 14609776--14610055 Score: 384
Period size: 153 Copynumber: 1.8 Consensus size: 153
14609766 CTAATAGACA
* * *
14609776 TTTTTGCACTCCTTAAAAAACTTTCAAAATGCTAGAGAAAAGGATCAAACCTAAGGCTTGATGGT
1 TTTTTGCACTCCTTAAAAAACCTTCAAAACGCTAAAGAAAAGGATCAAACCTAAGGCTTGATGGT
* * * *
14609841 TAATAGCCGTATGTTCAAACCAACTGAACTGCTCCAGTTTTTTTAGCAAAGGATTATTCAAGGCG
66 TAATAGCCGTATGCTCAAACCAACTAAACTGCTCCAGTGTTTTTAGCAAAAGATTATTCAAGGCG
14609906 TTTATAAACGCTACTAACAGGCG
131 TTTATAAACGCTACTAACAGGCG
* * * *
14609929 TTTTTGTACTCCTTAAAAAACCTTCAAAACGCTAAAGAGAGGGATCGAACCT-AGGACCTT-ATG
1 TTTTTGCACTCCTTAAAAAACCTTCAAAACGCTAAAGAAAAGGATCAAACCTAAGG--CTTGATG
* * * * *
14609992 GTTAATAGCCTTATGCTCTAACCGACTAAATTGCTCTAGTGTTTTTAGCAAAAGATTATTCAAG
64 GTTAATAGCCGTATGCTCAAACCAACTAAACTGCTCCAGTGTTTTTAGCAAAAGATTATTCAAG
14610056 ATGTTTTTGA
Statistics
Matches: 109, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
152 3 0.03
153 103 0.94
154 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (153 bp):
TTTTTGCACTCCTTAAAAAACCTTCAAAACGCTAAAGAAAAGGATCAAACCTAAGGCTTGATGGT
TAATAGCCGTATGCTCAAACCAACTAAACTGCTCCAGTGTTTTTAGCAAAAGATTATTCAAGGCG
TTTATAAACGCTACTAACAGGCG
Found at i:14610154 original size:60 final size:63
Alignment explanation
Indices: 14610044--14610184 Score: 179
Period size: 60 Copynumber: 2.3 Consensus size: 63
14610034 TTTTAGCAAA
* * *
14610044 AGATTATTCAA-GATGTTTTTGACCAAAAACATCTTGAATAATCCCCAAT-AAAAATTAAAGG
1 AGATTATTCAAGGATGTTTCTGACCAAAAACACCTTGAATAATCCCCAATAAAAAATGAAAGG
* *
14610105 AGATTATTCAAGGCAT-TTTCT-ACC-AAAACACCTTGGATAATCCCTAATAAAAAATGAAAGG
1 AGATTATTCAAGG-ATGTTTCTGACCAAAAACACCTTGAATAATCCCCAATAAAAAATGAAAGG
14610166 -GATTATTCAAGG-TGTTTCT
1 AGATTATTCAAGGATGTTTCT
14610185 AGTTAGAAAT
Statistics
Matches: 71, Mismatches: 5, Indels: 10
0.83 0.06 0.12
Matches are distributed among these distances:
58 1 0.01
59 5 0.07
60 33 0.46
61 25 0.35
62 5 0.07
63 2 0.03
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.30
Consensus pattern (63 bp):
AGATTATTCAAGGATGTTTCTGACCAAAAACACCTTGAATAATCCCCAATAAAAAATGAAAGG
Found at i:14610278 original size:121 final size:123
Alignment explanation
Indices: 14610101--14610421 Score: 332
Period size: 121 Copynumber: 2.6 Consensus size: 123
14610091 ATAAAAATTA
* *
14610101 AAGGAGATTATTCAAGGCA-TTTTCTA-C-CAAAACACCTTGGATAATCCCTAATAAAAAATGAA
1 AAGG-GATTATTCAAGG-AGTTTTCTAGCAAAAAACACCTTGAATAATCCC-AA-AAAAAATGAA
* * ** * *
14610163 AGGGATTATTCAAGGTGTTTCTAGTTAG-AAATGCCTTGAATGACCCCATTCAATTTTTTGT
62 AGGGATTATTAAAGGTGTTTCTAGCTAGAAAACACCTTGAATAACCCCATTCAATTTTTTCT
* * * * * *
14610224 AAGGGATTATTTAAGGAGTTTT-TGGTAAAAAACACCTTGAATAATCCC-AAAAAAAGGTAAGAG
1 AAGGGATTATTCAAGGAGTTTTCTAGCAAAAAACACCTTGAATAATCCCAAAAAAAATGAAAGGG
* * * * *
14610287 ATTATTTAAGGTGTTTTTGGCTAGAAAACACCTTGAATAATCCCTTTCAATTTTTTCT
66 ATTATTAAAGGTGTTTCTAGCTAGAAAACACCTTGAATAACCCCATTCAATTTTTTCT
* * * * *
14610345 AAGGGATTATTCAAGGCGTTTTCTAGCCAAAAACACCTTAAATAAT-CTAAAAAAAATAAAAGGG
1 AAGGGATTATTCAAGGAGTTTTCTAGCAAAAAACACCTTGAATAATCCCAAAAAAAATGAAAGGG
14610409 TATTATTAAAGGT
66 -ATTATTAAAGGT
14610422 ATTTTTTTTT
Statistics
Matches: 161, Mismatches: 30, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
120 31 0.19
121 51 0.32
122 45 0.28
123 34 0.21
ACGTcount: A:0.38, C:0.14, G:0.16, T:0.32
Consensus pattern (123 bp):
AAGGGATTATTCAAGGAGTTTTCTAGCAAAAAACACCTTGAATAATCCCAAAAAAAATGAAAGGG
ATTATTAAAGGTGTTTCTAGCTAGAAAACACCTTGAATAACCCCATTCAATTTTTTCT
Found at i:14610734 original size:61 final size:61
Alignment explanation
Indices: 14610593--14610734 Score: 142
Period size: 61 Copynumber: 2.3 Consensus size: 61
14610583 CATTTTTTTT
* * * * * **
14610593 GGATTATTCAATGCGTTTTTGACCAGAAACACTTTGAATAATCTCCAAAAAAAATTGAAGG
1 GGATTATTCAAGGCGTTTTTGACAAAAAACACCTTAAATAATCTCCAAAAAAAATCAAAGG
** * * **
14610654 TAATTATTGAAGGTGTTTTTGACAAAAAAACACCTTAAATAATC-CCCTAAAAAATCAAAGG
1 GGATTATTCAAGGCGTTTTTGAC-AAAAAACACCTTAAATAATCTCCAAAAAAAATCAAAGG
*
14610715 GGATTATTCAAGGCATTTTT
1 GGATTATTCAAGGCGTTTTT
14610735 TGCTAGAAAT
Statistics
Matches: 62, Mismatches: 18, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
61 46 0.74
62 16 0.26
ACGTcount: A:0.40, C:0.14, G:0.15, T:0.31
Consensus pattern (61 bp):
GGATTATTCAAGGCGTTTTTGACAAAAAACACCTTAAATAATCTCCAAAAAAAATCAAAGG
Found at i:14610920 original size:178 final size:179
Alignment explanation
Indices: 14610680--14611006 Score: 446
Period size: 178 Copynumber: 1.8 Consensus size: 179
14610670 TTTTGACAAA
* *
14610680 AAAACACCTTAAATAATCCCCTAAAAAATCAAAGGGGATTATTCAAGGCATTTTTTGCTAGAAAT
1 AAAACACCTTAAATAATCCCCTAAAAAATCAAAGGAGATTATTCAAGGCATTTTTAGCTAGAAAT
* * * *
14610745 GCCTTGAATAACCCCATTTAGTTTTTTGCAATGG-ATTATTTAAAGCATTTTCTAGCCAAAAATA
66 ACCTTGAATAACCCCATTCAGTTTTTTGCAA-GGCATTATTCAAAGCATTTTCTAGCCAAAAACA
14610809 CCTTGAATAATCCTAAAAAAAGGGAGAGATTATTGAAGGTATTTTTTGTAG
130 CCTTGAATAAT-CTAAAAAAAGGGAGAGATTATTGAAGGTATTTTTTGTAG
* ** * * *
14610860 AAAACACCTTGAATAAT-TTCTCAAAAATTAAA-GAGATTAATT-AAGGCATTTTTAGCTAGAAT
1 AAAACACCTTAAATAATCCCCTAAAAAATCAAAGGAGATT-ATTCAAGGCATTTTTAGCTAGAAA
* * * * *
14610922 TACCTTGAATAACCCTATTCATTTTTTTGTAAGGCATTATTCAAGGCATTTTTTAGCCAAAAACA
65 TACCTTGAATAACCCCATTCAGTTTTTTGCAAGGCATTATTCAAAGCATTTTCTAGCCAAAAACA
14610987 CCTTGAATAATCTAAAAAAA
130 CCTTGAATAATCTAAAAAAA
14611007 AATGAAAGGG
Statistics
Matches: 128, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
177 11 0.09
178 87 0.68
179 14 0.11
180 16 0.12
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (179 bp):
AAAACACCTTAAATAATCCCCTAAAAAATCAAAGGAGATTATTCAAGGCATTTTTAGCTAGAAAT
ACCTTGAATAACCCCATTCAGTTTTTTGCAAGGCATTATTCAAAGCATTTTCTAGCCAAAAACAC
CTTGAATAATCTAAAAAAAGGGAGAGATTATTGAAGGTATTTTTTGTAG
Found at i:14611180 original size:59 final size:59
Alignment explanation
Indices: 14611039--14611213 Score: 169
Period size: 59 Copynumber: 2.9 Consensus size: 59
14611029 TGTTTCTCTT
** * * * *
14611039 AAAAAAATGGAAGGGGATTATTCAAGGTATTTTTA-ACATAAAAGC-CTTGAGTAATCTCCA
1 AAAAAAATAAAAGAGGATTATTGAAGGTATTTTTAGCCA-AAAA-CACTTGAATAA-CTCCA
*
14611099 AAAAAAATTAAAGAGGATTATTGAAGGTATTTTTAGCCAAAAACACTTTGAATAA-TCCA
1 AAAAAAATAAAAGAGGATTATTGAAGGTATTTTTAGCCAAAAACAC-TTGAATAACTCCA
* * * *
14611158 AAAAAAA-AAGAATAGGATTATTGAAGGCATTTTTTGCCAGAAACACCTTGAATAAC
1 AAAAAAATAA-AAGAGGATTATTGAAGGTATTTTTAGCCAAAAACA-CTTGAATAAC
14611214 CCCATTCAAT
Statistics
Matches: 98, Mismatches: 11, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
58 1 0.01
59 51 0.52
60 37 0.38
61 9 0.09
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.27
Consensus pattern (59 bp):
AAAAAAATAAAAGAGGATTATTGAAGGTATTTTTAGCCAAAAACACTTGAATAACTCCA
Found at i:14611577 original size:34 final size:34
Alignment explanation
Indices: 14611539--14611606 Score: 91
Period size: 34 Copynumber: 2.0 Consensus size: 34
14611529 TTGCATTTTG
* *
14611539 GGTCAAATCCCTAAACTTTCAATTTGATTTGTTA
1 GGTCAAATCCCTAAACTTCCAATCTGATTTGTTA
* * *
14611573 GGTCAAATTCTTAAACTTCCTATCTGATTTGTTA
1 GGTCAAATCCCTAAACTTCCAATCTGATTTGTTA
14611607 TGTTTCTTGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.28, C:0.18, G:0.12, T:0.43
Consensus pattern (34 bp):
GGTCAAATCCCTAAACTTCCAATCTGATTTGTTA
Found at i:14618127 original size:20 final size:20
Alignment explanation
Indices: 14618086--14618133 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
14618076 GGAGGAAAGG
14618086 AAATGCAAAGAATGAAAAAA
1 AAATGCAAAGAATGAAAAAA
*
14618106 AAATGGCAAA-AA-GAAAAGA
1 AAAT-GCAAAGAATGAAAAAA
14618125 AAA-GCAAAG
1 AAATGCAAAG
14618134 CCTTAATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 5 0.20
19 9 0.36
20 6 0.24
21 5 0.20
ACGTcount: A:0.69, C:0.06, G:0.19, T:0.06
Consensus pattern (20 bp):
AAATGCAAAGAATGAAAAAA
Found at i:14618823 original size:35 final size:35
Alignment explanation
Indices: 14618756--14618823 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
14618746 GGTGCAAAAT
* * *
14618756 TTTAAAATTTTGGTTGAATTGGGTATAATTAATAA
1 TTTAAAATTTTGGTTAAACTGGGTACAATTAATAA
*
14618791 TTTAAAATTTTGGTTAAACTGGGTACAGTTAAT
1 TTTAAAATTTTGGTTAAACTGGGTACAATTAAT
14618824 GCTATTTTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (35 bp):
TTTAAAATTTTGGTTAAACTGGGTACAATTAATAA
Found at i:14619582 original size:30 final size:30
Alignment explanation
Indices: 14619525--14619584 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
14619515 AATACCAAAG
*
14619525 TTGTTTTCTAAATTCTTTTCTTCAATACAA
1 TTGTTTTCTAAATTCTTTCCTTCAATACAA
*
14619555 TTGTTTTCTTAAATTC-TTCCTTTAATACAA
1 TTGTTTTC-TAAATTCTTTCCTTCAATACAA
14619585 GTATTCTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 20 0.74
31 7 0.26
ACGTcount: A:0.27, C:0.17, G:0.03, T:0.53
Consensus pattern (30 bp):
TTGTTTTCTAAATTCTTTCCTTCAATACAA
Found at i:14620765 original size:15 final size:16
Alignment explanation
Indices: 14620747--14620779 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
14620737 AATGAAAGCA
*
14620747 AAATCGAATAAA-TAG
1 AAATCAAATAAACTAG
14620762 AAATCAAATAAACTAG
1 AAATCAAATAAACTAG
14620778 AA
1 AA
14620780 GCAATAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (16 bp):
AAATCAAATAAACTAG
Found at i:14622370 original size:13 final size:13
Alignment explanation
Indices: 14622352--14622376 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14622342 TAAATAGAAT
14622352 TGCCACATCATCA
1 TGCCACATCATCA
14622365 TGCCACATCATC
1 TGCCACATCATC
14622377 CTCCATGTCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.08, T:0.24
Consensus pattern (13 bp):
TGCCACATCATCA
Found at i:14622717 original size:21 final size:20
Alignment explanation
Indices: 14622692--14622733 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
14622682 TTCCATATTA
14622692 TGATCAAGAATCATCAAAGAT
1 TGATCAAGAATCATC-AAGAT
14622713 TGATCAAGAATCATCAAGAT
1 TGATCAAGAATCATCAAGAT
14622733 T
1 T
14622734 TACCAAGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.26
Consensus pattern (20 bp):
TGATCAAGAATCATCAAGAT
Found at i:14622721 original size:10 final size:10
Alignment explanation
Indices: 14622694--14622746 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
14622684 CCATATTATG
*
14622694 ATCAAGAATC
1 ATCAAGATTC
*
14622704 ATCAAAGATTG
1 ATC-AAGATTC
*
14622715 ATCAAGAATC
1 ATCAAGATTC
*
14622725 ATCAAGATTT
1 ATCAAGATTC
*
14622735 ACCAAGATTC
1 ATCAAGATTC
14622745 AT
1 AT
14622747 TCTTTTCTTC
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
10 25 0.76
11 8 0.24
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.26
Consensus pattern (10 bp):
ATCAAGATTC
Found at i:14622740 original size:20 final size:21
Alignment explanation
Indices: 14622696--14622746 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 21
14622686 ATATTATGAT
*
14622696 CAAGAATCATCAAAGATTGAT
1 CAAGAATCATCAAAGATTGAC
*
14622717 CAAGAATCATC-AAGATTTAC
1 CAAGAATCATCAAAGATTGAC
*
14622737 CAAGATTCAT
1 CAAGAATCAT
14622747 TCTTTTCTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (21 bp):
CAAGAATCATCAAAGATTGAC
Found at i:14625944 original size:25 final size:25
Alignment explanation
Indices: 14625916--14625969 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
14625906 AGATGTTTGG
14625916 AGTAAGAAAAAATTTCAATCAGATA
1 AGTAAGAAAAAATTTCAATCAGATA
* *
14625941 AGTAAGAAAATATTTCAATTAGATA
1 AGTAAGAAAAAATTTCAATCAGATA
14625966 AGTA
1 AGTA
14625970 TAATTTGATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.54, C:0.06, G:0.13, T:0.28
Consensus pattern (25 bp):
AGTAAGAAAAAATTTCAATCAGATA
Found at i:14626358 original size:49 final size:49
Alignment explanation
Indices: 14626268--14626657 Score: 227
Period size: 49 Copynumber: 8.1 Consensus size: 49
14626258 AAATAAGATG
* * * * * * *
14626268 TTTTAAAGTTTTTTAACCACTCTTTAGAGGAGCCTTGCAAAAATGGAAT
1 TTTTAAAGTTTTCTAGCCTCTCTTTAAAGAAACCTTTCAAAAATGGAAT
* * * *
14626317 TTTTAAAGTTTGCTAGCCTCTTTTTAAAGAAACTTTTCAAAATTGGGAAT
1 TTTTAAAGTTTTCTAGCCTCTCTTTAAAGAAACCTTTCAAAAAT-GGAAT
* * * * *
14626367 TTTT--AGTTTTCTAGCATCTCTTTAGAAG-AGCCTTTGAAAAGTGGGAT
1 TTTTAAAGTTTTCTAGCCTCTCTTTA-AAGAAACCTTTCAAAAATGGAAT
* * * * *
14626414 TTTTAAAGTTTTCTAACCTTTCTTTACATAAACTTTTCAAAAAAT-GAGA-
1 TTTTAAAGTTTTCTAGCCTCTCTTTAAAGAAACCTTTC-AAAAATGGA-AT
* * * * *
14626463 TTTTAAAGTTTTCCAGCCTCTCTTTAGAGAAGCCTTTCAAAAATGGGAG
1 TTTTAAAGTTTTCTAGCCTCTCTTTAAAGAAACCTTTCAAAAATGGAAT
* * * * *
14626512 TTTTAATGTTTCCTA-AC-CAC--T--AG-AGCCTTTCAAAAATGGAAT
1 TTTTAAAGTTTTCTAGCCTCTCTTTAAAGAAACCTTTCAAAAATGGAAT
* * *
14626554 TTTTAAAGTTTCCTAGCCTCTTTTTAAA-AGAACCTTTTC-AAAAT-AAGAT
1 TTTTAAAGTTTTCTAGCCTCTCTTTAAAGA-AACC-TTTCAAAAATGGA-AT
*** * * *
14626603 TTTTAAAGTTTTTCTAATGTCTTTTTAAATG-AGCTTTTCAAAAATGGAAT
1 TTTTAAAG-TTTTCTAGCCTCTCTTTAAA-GAAACCTTTCAAAAATGGAAT
14626653 TTTTA
1 TTTTA
14626658 GTTTCCTAAT
Statistics
Matches: 260, Mismatches: 57, Indels: 47
0.71 0.16 0.13
Matches are distributed among these distances:
42 31 0.12
43 3 0.01
44 1 0.00
45 1 0.00
46 1 0.00
47 10 0.04
48 38 0.15
49 125 0.48
50 49 0.19
51 1 0.00
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.41
Consensus pattern (49 bp):
TTTTAAAGTTTTCTAGCCTCTCTTTAAAGAAACCTTTCAAAAATGGAAT
Found at i:14626740 original size:97 final size:96
Alignment explanation
Indices: 14626281--14626742 Score: 340
Period size: 97 Copynumber: 4.8 Consensus size: 96
14626271 TAAAGTTTTT
* * * * *
14626281 TAACCACTCTTTAGAGGAGCCTTGCAAAAATG-GAATTTTTAAAGTTTGCTAGCCTCTTTTTAAA
1 TAACCTCTCTTTAGAAGAGCCTTTCAAAAATGAG-ATTTTTAAAGTTTCCTAACCTCTTTTTAAA
* *
14626345 GAAACTTTTCAAAATTGGGAATTTTTAGTTTTC
65 GAAACTTTTCAAAAAT-GGAATTTTTAGTTTCC
* * * * * * *
14626378 TAGCATCTCTTTAGAAGAGCCTTTGAAAAGTGGGATTTTTAAAGTTTTCTAACCT-TTCTTTACA
1 TAACCTCTCTTTAGAAGAGCCTTTCAAAAATGAGATTTTTAAAGTTTCCTAACCTCTT-TTTAAA
* *
14626442 TAAACTTTTCAAAAAAT-GAGATTTTAAAGTTTTCC
65 GAAACTTTTC-AAAAATGGA-ATTTT-TAG-TTTCC
* * * * *
14626477 -AGCCTCTCTTTAG-AGAAGCCTTTCAAAAATGGGAGTTTTAATGTTTCCTAACCAC----T--A
1 TAACCTCTCTTTAGAAG-AGCCTTTCAAAAATGAGATTTTTAAAGTTTCCTAACCTCTTTTTAAA
* *
14626534 G-AGCCTTTCAAAAATGGAATTTTTAAAGTTTCC
65 GAAACTTTTCAAAAATGGAATTTTT--AGTTTCC
* * * * * * **
14626567 TAGCCTCTTTTTAAAAGAACCTTTTC-AAAATAAGATTTTTAAAGTTTTTCTAATGTCTTTTTAA
1 TAACCTCTCTTTAGAAGAGCC-TTTCAAAAATGAGATTTTTAAAG-TTTCCTAACCTCTTTTTAA
*
14626631 ATG-AGCTTTTCAAAAATGGAATTTTTAGTTTCC
64 A-GAAACTTTTCAAAAATGGAATTTTTAGTTTCC
* * * * * *
14626664 TAATCTATCTTTAGATGAGCCTTTAAAAAAATGAGATTTTTTAAGTTTCCTAACCTCTTTTTAGA
1 TAACCTCTCTTTAGAAGAGCCTTT-CAAAAATGAGATTTTTAAAGTTTCCTAACCTCTTTTTAAA
* *
14626729 GCAGCTTTTCAAAA
65 GAAACTTTTCAAAA
14626743 TTAAGATTTT
Statistics
Matches: 289, Mismatches: 51, Indels: 50
0.74 0.13 0.13
Matches are distributed among these distances:
90 16 0.06
91 38 0.13
92 15 0.05
94 1 0.00
96 9 0.03
97 114 0.39
98 69 0.24
99 27 0.09
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (96 bp):
TAACCTCTCTTTAGAAGAGCCTTTCAAAAATGAGATTTTTAAAGTTTCCTAACCTCTTTTTAAAG
AAACTTTTCAAAAATGGAATTTTTAGTTTCC
Found at i:14626788 original size:50 final size:50
Alignment explanation
Indices: 14626534--14626791 Score: 217
Period size: 50 Copynumber: 5.2 Consensus size: 50
14626524 CTAACCACTA
* * * * *
14626534 GAGCCTTTCAAAAAT-GGAATTTTTAAAGTTTCCTAGCCTCTTTTTAAAA
1 GAGCTTTTCAAAAATAAGATTTTTTAAAGTTTCCTAACCTCTTTTTAAAT
* * **
14626583 GAACCTTTTC-AAAATAAGA-TTTTTAAAGTTTTTCTAATGTCTTTTTAAAT
1 G-AGCTTTTCAAAAATAAGATTTTTTAAAG-TTTCCTAACCTCTTTTTAAAT
* * * * * *
14626633 GAGCTTTTCAAAAAT-GGAATTTTT--AGTTTCCTAATCTATCTTTAGAT
1 GAGCTTTTCAAAAATAAGATTTTTTAAAGTTTCCTAACCTCTTTTTAAAT
** * *
14626680 GAGCCTTTAAAAAAATGAGATTTTTT-AAGTTTCCTAACCTCTTTTTAGA-
1 GAG-CTTTTCAAAAATAAGATTTTTTAAAGTTTCCTAACCTCTTTTTAAAT
* * *
14626729 GCAGCTTTTCAAAATTAAGATTTTTTAAAGTTTCATAACCTTTTTTTAAAT
1 G-AGCTTTTCAAAAATAAGATTTTTTAAAGTTTCCTAACCTCTTTTTAAAT
*
14626780 GAGTTTTTCAAA
1 GAGCTTTTCAAA
14626792 GCTGAGATTG
Statistics
Matches: 168, Mismatches: 30, Indels: 21
0.77 0.14 0.10
Matches are distributed among these distances:
47 19 0.11
48 12 0.07
49 50 0.30
50 86 0.51
51 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.44
Consensus pattern (50 bp):
GAGCTTTTCAAAAATAAGATTTTTTAAAGTTTCCTAACCTCTTTTTAAAT
Found at i:14635971 original size:44 final size:44
Alignment explanation
Indices: 14635908--14635992 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
14635898 TCAAGAATGC
14635908 ACAAGCCCAATTAGACTTCATCACAT-TCAGCCAAGGTGAAATTT
1 ACAAGCCCAATTAGACTTCATCACATCT-AGCCAAGGTGAAATTT
* *
14635952 ACAAGCCCCATTAGACTTCATCACATCTGGCCAAGGTGAAA
1 ACAAGCCCAATTAGACTTCATCACATCTAGCCAAGGTGAAA
14635993 GTTCAAGATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.35, C:0.27, G:0.15, T:0.22
Consensus pattern (44 bp):
ACAAGCCCAATTAGACTTCATCACATCTAGCCAAGGTGAAATTT
Found at i:14637561 original size:3 final size:3
Alignment explanation
Indices: 14637485--14637540 Score: 87
Period size: 3 Copynumber: 18.3 Consensus size: 3
14637475 AAATTTTCTT
14637485 TTA TT- TTA TTTA TTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14637531 TTA TTA TTA T
1 TTA TTA TTA T
14637541 ATTCTACCTT
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.04
3 42 0.82
4 7 0.14
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:14641616 original size:19 final size:18
Alignment explanation
Indices: 14641556--14641618 Score: 63
Period size: 19 Copynumber: 3.3 Consensus size: 18
14641546 AAAAATTTAA
*
14641556 AAAAAAAAAACAAAAAAGG
1 AAAAAAACAA-AAAAAAGG
* * *
14641575 TAAAAAAATAAAAACAAGA
1 -AAAAAAACAAAAAAAAGG
14641594 AAAAAGAACAAAAAAAAGG
1 AAAAA-AACAAAAAAAAGG
14641613 AAAAAA
1 AAAAAA
14641619 GAATACTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
18 6 0.17
19 21 0.58
20 9 0.25
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.03
Consensus pattern (18 bp):
AAAAAAACAAAAAAAAGG
Found at i:14642830 original size:86 final size:85
Alignment explanation
Indices: 14642644--14642971 Score: 289
Period size: 86 Copynumber: 3.8 Consensus size: 85
14642634 AATTATTATG
** * * ** * *
14642644 AAACCTTTACGAATCTAGAACCTTTACGAAACTTAGAATCTTACG-ATCTTCCATTCTTATGAAT
1 AAACCTTTGTGAATCTA-AACCTTTATGAAACTTAAAATCTTGTGAATCTTTCATTCTTGTGAAT
* * ** * *
14642708 TTGAAAGTCCTTACGAACTTG
65 CTGAAAGTCATTGTGAACCTA
* ** *
14642729 AAACCTTTGCGAATCTATAACCTTTATGAAACTTAAAATCTTGCAAATATTTCATTCTTGTGAAT
1 AAACCTTTGTGAATCTA-AACCTTTATGAAACTTAAAATCTTGTGAATCTTTCATTCTTGTGAAT
* * *
14642794 CTTACAGTTATTGTGAACCTA
65 CTGAAAGTCATTGTGAACCTA
* * ** * * **
14642815 AAACCTTTGTAAATCTAGAACCTCTACAAAACTCAAAATCTTGTGAATCTTCCATTCTTGAAAAT
1 AAACCTTTGTGAATCTA-AACCTTTATGAAACTTAAAATCTTGTGAATCTTTCATTCTTGTGAAT
* * *
14642880 CTGAAAGTCCTTGTGAACTTG
65 CTGAAAGTCATTGTGAACCTA
* * * *
14642901 AAACCTTTGTGAATTTAAGACCTTTGTGAAACTTGAAATCTTGTGAATCTTTCCTTCTTGTGAAT
1 AAACCTTTGTGAATCTAA-ACCTTTATGAAACTTAAAATCTTGTGAATCTTTCATTCTTGTGAAT
14642966 CTGAAA
65 CTGAAA
14642972 ACCTTTACGA
Statistics
Matches: 192, Mismatches: 49, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
85 40 0.21
86 152 0.79
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.36
Consensus pattern (85 bp):
AAACCTTTGTGAATCTAAACCTTTATGAAACTTAAAATCTTGTGAATCTTTCATTCTTGTGAATC
TGAAAGTCATTGTGAACCTA
Found at i:14642912 original size:17 final size:17
Alignment explanation
Indices: 14642890--14642947 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
14642880 CTGAAAGTCC
14642890 TTGTGAACTTGAAACCT
1 TTGTGAACTTGAAACCT
*
14642907 TTGTGAA-TTTAAGACCT
1 TTGTGAACTTGAA-ACCT
*
14642924 TTGTGAAACTTGAAATC-
1 TTGTG-AACTTGAAACCT
14642941 TTGTGAA
1 TTGTGAA
14642948 TCTTTCCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
16 6 0.17
17 21 0.60
18 4 0.11
19 4 0.11
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (17 bp):
TTGTGAACTTGAAACCT
Found at i:14642933 original size:172 final size:171
Alignment explanation
Indices: 14642655--14642967 Score: 423
Period size: 172 Copynumber: 1.8 Consensus size: 171
14642645 AACCTTTACG
* * * * * *
14642655 AATCTAGAACCTTTACGAAACTTAGAATCTTACGATCTTCCATTCTTATGAATTTGAAAGTCCTT
1 AATCTAGAACCTCTACAAAACTCAAAATCTTACGATCTTCCATTCTTATAAATCTGAAAGTCCTT
14642720 ACGAACTTGAAACCTTTGCGAATCTATAACCTTTATGAAACTTAAAATCTTGCAAATATTTCATT
66 ACGAACTTGAAACCTTTGCGAATCTATAACCTTTATGAAACTTAAAATCTTGCAAATATTTCATT
14642785 CTTGTGAATCTTACAGTTATTGTGAACCTAAAACCTTTGTA
131 CTTGTGAATCTTACAGTTATTGTGAACCTAAAACCTTTGTA
**
14642826 AATCTAGAACCTCTACAAAACTCAAAATCTTGTGAATCTTCCATTCTTGA-AAATCTGAAAGTCC
1 AATCTAGAACCTCTACAAAACTCAAAATCTTACG-ATCTTCCATTCTT-ATAAATCTGAAAGTCC
** * * * * ** *
14642890 TTGTGAACTTGAAACCTTTGTGAATTTA-AGACCTTTGTGAAACTTGAAATCTTGTGAATCTTTC
64 TTACGAACTTGAAACCTTTGCGAATCTATA-ACCTTTATGAAACTTAAAATCTTGCAAATATTTC
*
14642954 CTTCTTGTGAATCT
128 ATTCTTGTGAATCT
14642968 GAAAACCTTT
Statistics
Matches: 121, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
171 29 0.24
172 91 0.75
173 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (171 bp):
AATCTAGAACCTCTACAAAACTCAAAATCTTACGATCTTCCATTCTTATAAATCTGAAAGTCCTT
ACGAACTTGAAACCTTTGCGAATCTATAACCTTTATGAAACTTAAAATCTTGCAAATATTTCATT
CTTGTGAATCTTACAGTTATTGTGAACCTAAAACCTTTGTA
Found at i:14644508 original size:23 final size:23
Alignment explanation
Indices: 14644482--14644526 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
14644472 AATTTTCTTT
*
14644482 TATTTTACTTATT-ATTATTATTA
1 TATTCTACTT-TTAATTATTATTA
14644505 TATTCTACTTTTAATTATTATT
1 TATTCTACTTTTAATTATTATT
14644527 TTAAATTGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTCTACTTTTAATTATTATTA
Found at i:14645475 original size:18 final size:17
Alignment explanation
Indices: 14645454--14645500 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
14645444 ACTTTTGTTC
14645454 TTTCTTTTAGTT-TTTAAG
1 TTTCTTTTAGTTCTTT--G
* *
14645472 TTTCTTTAAGTTCTTTT
1 TTTCTTTTAGTTCTTTG
14645489 TTTCTTTTAGTT
1 TTTCTTTTAGTT
14645501 AAGGTATTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 11 0.44
18 11 0.44
19 3 0.12
ACGTcount: A:0.13, C:0.09, G:0.09, T:0.70
Consensus pattern (17 bp):
TTTCTTTTAGTTCTTTG
Found at i:14645788 original size:21 final size:22
Alignment explanation
Indices: 14645764--14645810 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
14645754 GCAATTTGGC
14645764 ATTCTTT-TTTACAATATTTTA
1 ATTCTTTATTTACAATATTTTA
*
14645785 ATTCTTTACTTTACAATCTTTTA
1 ATTCTTTA-TTTACAATATTTTA
14645808 ATT
1 ATT
14645811 ATTGGCTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 7 0.30
23 16 0.70
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTCTTTATTTACAATATTTTA
Found at i:14645819 original size:23 final size:23
Alignment explanation
Indices: 14645771--14645820 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
14645761 GGCATTCTTT
* *
14645771 TTTACAATATTTTAATTCTTTAC
1 TTTACAATATTTTAATTATTGAC
* *
14645794 TTTACAATCTTTTAATTATTGGC
1 TTTACAATATTTTAATTATTGAC
14645817 TTTA
1 TTTA
14645821 GGATTACTTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56
Consensus pattern (23 bp):
TTTACAATATTTTAATTATTGAC
Found at i:14647572 original size:80 final size:80
Alignment explanation
Indices: 14647433--14647589 Score: 278
Period size: 80 Copynumber: 2.0 Consensus size: 80
14647423 CGAAAAGGGC
*
14647433 TTTCTTTAATACTTCATAGATACATATAAAGTCCCTTTCCTTCAATAGGTCTATTATATATATAT
1 TTTCTTTAATACTTCATAGATACATATAAAGTCCCTTTCCTTCAATAGGTCTATAATATATATAT
14647498 ATAGATATATATATA
66 ATAGATATATATATA
* *
14647513 TTTCTTTAATACTTCATAGATATATATAAAGTCCCTTTCCTTCAATAGGTTTATAATATATATAT
1 TTTCTTTAATACTTCATAGATACATATAAAGTCCCTTTCCTTCAATAGGTCTATAATATATATAT
*
14647578 ATATATATATAT
66 ATAGATATATAT
14647590 CTATGAAGTA
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 73 1.00
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.45
Consensus pattern (80 bp):
TTTCTTTAATACTTCATAGATACATATAAAGTCCCTTTCCTTCAATAGGTCTATAATATATATAT
ATAGATATATATATA
Found at i:14647575 original size:2 final size:2
Alignment explanation
Indices: 14647564--14647634 Score: 58
Period size: 2 Copynumber: 36.0 Consensus size: 2
14647554 TCAATAGGTT
* *
14647564 TA TA -A TA TA TA TA TA TA TA TA TA TA TC TA TGA -A GTA T- TA AA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA -TA TA TA TA
* * *
14647605 GA AA GA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
14647635 CATACACACA
Statistics
Matches: 57, Mismatches: 7, Indels: 10
0.77 0.09 0.14
Matches are distributed among these distances:
1 3 0.05
2 52 0.91
3 2 0.04
ACGTcount: A:0.51, C:0.01, G:0.06, T:0.42
Consensus pattern (2 bp):
TA
Found at i:14647616 original size:80 final size:80
Alignment explanation
Indices: 14647450--14647620 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 80
14647440 AATACTTCAT
* * *
14647450 AGATACATATAAAGTCCCTTTCCTTCAATAGGTCTATTATATATATATATAGATATATATATATT
1 AGATATATATAAAGTCCCTTTCCTTCAATAGGTCTATAATATATATATATAGATATATATATATA
* *** *
14647515 TCTTTAATACTTCAT
66 ACTTTAATACGAAAG
* * *
14647530 AGATATATATAAAGTCCCTTTCCTTCAATAGGTTTATAATATATATATATATATATATATCTATG
1 AGATATATATAAAGTCCCTTTCCTTCAATAGGTCTATAATATATATATATAGATATATATATAT-
*
14647595 AAGTATTAA-A-GAAAG
65 AACT-TTAATACGAAAG
*
14647610 ATATATATATA
1 AGATATATATA
14647621 TATATATATA
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 70 0.92
81 2 0.03
82 4 0.05
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.42
Consensus pattern (80 bp):
AGATATATATAAAGTCCCTTTCCTTCAATAGGTCTATAATATATATATATAGATATATATATATA
ACTTTAATACGAAAG
Found at i:14650567 original size:10 final size:10
Alignment explanation
Indices: 14650554--14650584 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
14650544 TATATTAAAT
14650554 TATTTTACAA
1 TATTTTACAA
14650564 TATTTTACAA
1 TATTTTACAA
14650574 TATTTTACAA
1 TATTTTACAA
14650584 T
1 T
14650585 TGGATTTAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.52
Consensus pattern (10 bp):
TATTTTACAA
Found at i:14655129 original size:25 final size:24
Alignment explanation
Indices: 14655093--14655139 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
14655083 AAATGCATCA
*
14655093 AAAATCATAAAATATT-ATGAAATT
1 AAAATCAAAAAAT-TTCATGAAATT
14655117 AAAATCTAAAAAATTTCATGAAA
1 AAAATC-AAAAAATTTCATGAAA
14655140 ATCTGAGCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAATCAAAAAATTTCATGAAATT
Found at i:14655442 original size:145 final size:144
Alignment explanation
Indices: 14654944--14655895 Score: 897
Period size: 145 Copynumber: 6.6 Consensus size: 144
14654934 ATTTTAATAT
* * * *
14654944 ATCAAAAATTATGAAATATTATGAAATTAAAATCTAAAACGTTTTATGAAAATTCAAGCTCGAAA
1 ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAGTTTCATGAAAATCCAAGCTCGAAA
** * * * * *
14655009 AGAATAAATTATAAAAATATCTTTATAAAGGTATTTTGATAATTTCATAC-TTTCTAAGATACTA
66 AGACCAAATTACAAAAATA-CCTTATAAAGGTATTTTGATAATTTCACACTTTTCGAA-ATACTG
* *
14655073 CTATAATTTCAAATGC
129 TTATGATTTCAAATGC
* * **
14655089 ATCAAAAATCATAAAATATTATGAAATTAAAATCTAAAAAATTTCATGAAAATCTGAGCTCGAAA
1 ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAGTTTCATGAAAATCCAAGCTCGAAA
* * * * * * * ** *
14655154 AGATCAAATTACAAGAATACTCGTATAGAGATATTTTGGTAATTTCACACTTATCAGAGGTACTA
66 AGACCAAATTACAAAAATAC-CTTATAAAGGTATTTTGATAATTTCACACTTTTC-GAAATACTG
*
14655219 TTATGATTTCAACTGC
129 TTATGATTTCAAATGC
* *
14655235 ATCAAAAATCATGAAATATTATGAAATTAAGATCTAAAAAGTTTCATGAAAATCTAAGCTCGAAA
1 ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAGTTTCATGAAAATCCAAGCTCGAAA
* * *
14655300 AGACCAAATTACGAGAATACCATTATAAGGGTATTTTGATAATTTCACACTTTTCGAAATACTGT
66 AGACCAAATTACAAAAATACC-TTATAAAGGTATTTTGATAATTTCACACTTTTCGAAATACTGT
14655365 TATGATTTCAAATGC
130 TATGATTTCAAATGC
* * * ** *
14655380 ATAAAAAATCATGAAATATTATAAAATCAGGATCTAAAAAGTTTCATGAGAATCCATA-CTCGAG
1 ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAGTTTCATGAAAATCCA-AGCTCGA-
* * * ** *
14655444 AAAGA-TAAATTAC-AAAATACCCTTATAAAGGTATTTTGATAATTTCATATTTTTTTAAGGTAC
64 AAAGACCAAATTACAAAAATA-CCTTATAAAGGTATTTTGATAATTTCACACTTTTCGAA-ATAC
* * *
14655507 TGCTATAATTTCAAATAC
127 TGTTATGATTTCAAATGC
* * * * ** *
14655525 ATCAAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATGAAAAACTGAGCTAGAAA
1 ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAGTTTCATGAAAATCCAAGCTCGAAA
* ** * ** *
14655590 A-AGCCAAATTACAAGAATACCTTTATAAAAATATTTTGATAATTTCATACTTTTCGAGGTAATG
66 AGA-CCAAATTACAAAAATACC-TTATAAAGGTATTTTGATAATTTCACACTTTTCGAAATACTG
*
14655654 TTGTGATTTCAAATGC
129 TTATGATTTCAAATGC
* **
14655670 ATCAAAAATCATGAAATATTAAGAAATTAAAATCT-AAAAGATTTCATGAAAATTTAAGCTC-AA
1 ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAG-TTTCATGAAAATCCAAGCTCGAA
* * * *
14655733 GAAGATCAAATTACAAAAATACTCTTAT-ATGAGTATTTTGATAATTTTACACTTTTTGAAATAC
65 -AAGACCAAATTACAAAAATAC-CTTATAAAG-GTATTTTGATAATTTCACACTTTTCGAAATAC
** * * *
14655797 TACTGTGATTTTAAATAC
127 TGTTATGATTTCAAATGC
** * * * * *
14655815 ATCAAAAA--A--AATATATTACCAAATTGAGATATAAAATA-TCTCATGAAAATCCAAGCTCAA
1 ATCAAAAATCATGAA-ATATTATGAAATTAAAATCTAAAA-AGTTTCATGAAAATCCAAGCTC-G
*
14655875 AAAAGA-TAAATTACAAAAATA
63 AAAAGACCAAATTACAAAAATA
14655896 TCATTTAAAA
Statistics
Matches: 671, Mismatches: 113, Indels: 49
0.81 0.14 0.06
Matches are distributed among these distances:
141 2 0.00
142 46 0.07
143 9 0.01
144 52 0.08
145 391 0.58
146 170 0.25
147 1 0.00
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.33
Consensus pattern (144 bp):
ATCAAAAATCATGAAATATTATGAAATTAAAATCTAAAAAGTTTCATGAAAATCCAAGCTCGAAA
AGACCAAATTACAAAAATACCTTATAAAGGTATTTTGATAATTTCACACTTTTCGAAATACTGTT
ATGATTTCAAATGC
Found at i:14658856 original size:36 final size:36
Alignment explanation
Indices: 14658816--14658889 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
14658806 GAGAGTACCT
14658816 ACCATTACCCATATTTGCATTGAAAAACCAAGATTA
1 ACCATTACCCATATTTGCATTGAAAAACCAAGATTA
14658852 ACCATTACCCATATTTGCATTGAAAAACCAAGATTA
1 ACCATTACCCATATTTGCATTGAAAAACCAAGATTA
14658888 AC
1 AC
14658890 TTATTGCTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.42, C:0.23, G:0.08, T:0.27
Consensus pattern (36 bp):
ACCATTACCCATATTTGCATTGAAAAACCAAGATTA
Found at i:14661402 original size:132 final size:133
Alignment explanation
Indices: 14661226--14661478 Score: 330
Period size: 132 Copynumber: 1.9 Consensus size: 133
14661216 GAGCTGTTGT
* * ** *
14661226 AAAAACTTATTTTATTTGTAACAATTTTTCGATATTGTTACTTAATTTATTTTTTAAAAATTTTG
1 AAAAACTTATTTTAATTGCAACAATTTTTCGATATCATTACTTAATTTATTTTTTAAAAATTTTA
*
14661291 TACAACAAC-AAAAAAGTTGTTACCAAAATTTTTATCACATTTATAACAATAAAAAATTTATTAT
66 TACAACAACAAAAAAAGTTGTTACCAAAATTTTCATCACATTTATAACAATAAAAAATTTATTAT
14661355 TGC
131 TGC
** * * *
14661358 AAAAACTTATTTTAATTGCAATGATTTTTC-ATTATCATTGCTTAATTTATTTTTTAATATTTTT
1 AAAAACTTATTTTAATTGCAACAATTTTTCGA-TATCATTACTTAATTTATTTTTTAAAAATTTT
** * * * *
14661422 ATACAATGACAAAAAAAGTTTTTACGAAAATTTTCATCATATTTATAGCAATAAAAA
65 ATACAACAACAAAAAAAGTTGTTACCAAAATTTTCATCACATTTATAACAATAAAAA
14661479 GAATTACAAT
Statistics
Matches: 102, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
131 1 0.01
132 60 0.59
133 41 0.40
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.44
Consensus pattern (133 bp):
AAAAACTTATTTTAATTGCAACAATTTTTCGATATCATTACTTAATTTATTTTTTAAAAATTTTA
TACAACAACAAAAAAAGTTGTTACCAAAATTTTCATCACATTTATAACAATAAAAAATTTATTAT
TGC
Found at i:14667730 original size:131 final size:128
Alignment explanation
Indices: 14667556--14668207 Score: 659
Period size: 131 Copynumber: 5.0 Consensus size: 128
14667546 AACTGTTGCA
* * *
14667556 AAAACTTATTTTATTTTCAATGATTTTTAAATGT-TGTTACTTAATTTATTTTGTTAATATTTTA
1 AAAATTTATTTTATTTGCAATGATTTTTAAATGTCT-TTGCTTAATTTATTTT-TTAATATTTTA
* *
14667620 TACAATGACAAAAAAGTTATTACAAAATTTTTTGTCATATTTGTAAAGATAAAAAATTATTATTG
64 TACAATGACAAAAAAATTATTACAAAATTTTTT-T-ATATTTGTAAAGATAAAAAATTATTGTTG
14667685 TG
127 TG
* * *
14667687 AAAATTTATTGTATTTGCAATGATTTTTCAATATCTTTGCTTAATTTATTTTTGTAATATTTTAT
1 AAAATTTATTTTATTTGCAATGATTTTTAAATGTCTTTGCTTAATTTATTTTT-TAATATTTTAT
* * *
14667752 ACAATGACAAAAAAATTGTTACGAAAATTTTTATTATATTTGTAACGATGAAAAATTATTGTTGT
65 ACAATGACAAAAAAATTATTAC-AAAATTTTT-TTATATTTGTAAAGATAAAAAATTATTGTTGT
14667817 G
128 G
* * * * *
14667818 AAAACTTGTTTTACTTGCAATGGTTTTTAAATGT-TATTAG-TTAATTTATTTTTTAATATTATA
1 AAAATTTATTTTATTTGCAATGATTTTTAAATGTCT-TT-GCTTAATTTATTTTTTAATATTTTA
* * * *
14667881 TACAATGACAAAAAAAATTGTTATGAAAATTTTTATCATATTTGT-AAGAATAAAAACTTATTGT
64 TACAATGAC-AAAAAAATTATTA-CAAAATTTTT-TTATATTTGTAAAG-ATAAAAAATTATTGT
*
14667945 TGAG
125 TGTG
* *
14667949 AAAATCTATTTTATTTGCAATGATTTTTAAATGTCGTTGCTTAATTTATTTTTTTAATATTTTAT
1 AAAATTTATTTTATTTGCAATGATTTTTAAATGTCTTTGCTTAATTTA-TTTTTTAATATTTTAT
* * * * * * * *
14668014 ACGATGATAAAAGAGTTATTATGAAAATTTTTATTATATTTGTAACGACAAAAAATTATTGTTGC
65 ACAATGACAAAAAAATTATTA-CAAAATTTTT-TTATATTTGTAAAGATAAAAAATTATTGTTGT
14668079 G
128 G
* ** * ** * * *
14668080 AAAACTTGGTTTATGTGCAACAATGTTTAAATGTCATTACTTAATTTATTTATTTTAATATTTTT
1 AAAATTTATTTTATTTGCAATGATTTTTAAATGTCTTTGCTTAATTTA-TT-TTTTAATA-TTTT
* * * *
14668145 AGACAATGGCAAAAAAATTATTAAGAAAATTTTTATAATATTTGTAACA-ACT-AAAAATTATTG
63 ATACAATGACAAAAAAATTATT-ACAAAATTTTT-TTATATTTGTAA-AGA-TAAAAAATTATTG
14668208 CTACAAAATG
Statistics
Matches: 442, Mismatches: 61, Indels: 34
0.82 0.11 0.06
Matches are distributed among these distances:
130 23 0.05
131 320 0.72
132 43 0.10
133 55 0.12
134 1 0.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.46
Consensus pattern (128 bp):
AAAATTTATTTTATTTGCAATGATTTTTAAATGTCTTTGCTTAATTTATTTTTTAATATTTTATA
CAATGACAAAAAAATTATTACAAAATTTTTTTATATTTGTAAAGATAAAAAATTATTGTTGTG
Found at i:14667926 original size:262 final size:260
Alignment explanation
Indices: 14667549--14668191 Score: 840
Period size: 262 Copynumber: 2.4 Consensus size: 260
14667539 TAAAAAAAAC
* * * *
14667549 TGTTGCAAAAACTTATTTTATTTTCAATGATTTTTAAATGTTGTTACTTAATTTATTTTGTTAAT
1 TGTTGCGAAAACTTGTTTTA-TTGCAATGATTTTTAAATGTTATTACTTAATTTATTTT-TTAAT
* * *
14667614 ATTTTATACAATGACAAAAAAGTTATTACAAAATTTTTTGTCATATTTGTAAAG-ATAAAAAATT
64 ATTTTATACAATGACAAAAAAATTATTAGAAAA-TTTTTATCATATTTGTAAAGAATAAAAAATT
* * * *
14667678 ATTATTGTGAAAATTTATTGTATTTGCAATGATTTTTCAATATCTTTGCTTAATTTATTTTTGTA
128 ATTATTGAGAAAATCTATTGTATTTGCAATGATTTTTAAATATCGTTGCTTAATTTATTTTTGTA
* **
14667743 ATATTTTATACAATGACAAAAAAATTGTTACGAAAATTTTTATTATATTTGTAACGATGAAAAAT
193 ATATTTTATACAATGACAAAAAAATTATTACGAAAATTTTTATTATATTTGTAACGACAAAAAAT
14667808 TAT
258 TAT
* * *
14667811 TGTTGTGAAAACTTGTTTTACTTGCAATGGTTTTTAAATGTTATTAGTTAATTTATTTTTTAATA
1 TGTTGCGAAAACTTGTTTTA-TTGCAATGATTTTTAAATGTTATTACTTAATTTATTTTTTAATA
* * *
14667876 TTATATACAATGACAAAAAAAATTGTTATGAAAATTTTTATCATATTTGT-AAGAATAAAAACTT
65 TTTTATACAATGAC-AAAAAAATTATTA-GAAAATTTTTATCATATTTGTAAAGAATAAAAAATT
* * * *
14667940 ATTGTTGAGAAAATCTATTTTATTTGCAATGATTTTTAAATGTCGTTGCTTAATTTATTTTTTTA
128 ATTATTGAGAAAATCTATTGTATTTGCAATGATTTTTAAATATCGTTGCTTAATTTATTTTTGTA
* * * * *
14668005 ATATTTTATACGATGATAAAAGAGTTATTATGAAAATTTTTATTATATTTGTAACGACAAAAAAT
193 ATATTTTATACAATGACAAAAAAATTATTACGAAAATTTTTATTATATTTGTAACGACAAAAAAT
14668070 TAT
258 TAT
* ** * *
14668073 TGTTGCGAAAACTTGGTTTATGTGCAACAATGTTTAAATGTCATTACTTAATTTATTTATTTTAA
1 TGTTGCGAAAACTTGTTTTAT-TGCAATGATTTTTAAATGTTATTACTTAATTTA-TT-TTTTAA
* * *
14668138 TATTTTTAGACAATGGCAAAAAAATTATTAAGAAAATTTTTATAATATTTGTAA
63 TA-TTTTATACAATGACAAAAAAATTATT-AGAAAATTTTTATCATATTTGTAA
14668192 CAACTAAAAA
Statistics
Matches: 329, Mismatches: 43, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
261 23 0.07
262 248 0.75
263 6 0.02
264 39 0.12
265 13 0.04
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.46
Consensus pattern (260 bp):
TGTTGCGAAAACTTGTTTTATTGCAATGATTTTTAAATGTTATTACTTAATTTATTTTTTAATAT
TTTATACAATGACAAAAAAATTATTAGAAAATTTTTATCATATTTGTAAAGAATAAAAAATTATT
ATTGAGAAAATCTATTGTATTTGCAATGATTTTTAAATATCGTTGCTTAATTTATTTTTGTAATA
TTTTATACAATGACAAAAAAATTATTACGAAAATTTTTATTATATTTGTAACGACAAAAAATTAT
Found at i:14669124 original size:22 final size:21
Alignment explanation
Indices: 14669098--14669147 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
14669088 AAAAATTTTC
*
14669098 AATAAA-AATTTATTTATAAATT
1 AATAAACAATTT-TTTA-AAAAT
14669120 AATAAATCAATTTTTTAAAAAT
1 AATAAA-CAATTTTTTAAAAAT
14669142 AATAAA
1 AATAAA
14669148 GAAAAGTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 16 0.64
23 4 0.16
24 5 0.20
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AATAAACAATTTTTTAAAAAT
Found at i:14669198 original size:65 final size:66
Alignment explanation
Indices: 14669128--14669253 Score: 148
Period size: 65 Copynumber: 1.9 Consensus size: 66
14669118 TTAATAAATC
*
14669128 AATTTTTTAAAAATAATAAAGAAAAGTTTT-CTTAACTTTT-AAAACGATATGGAGTTTTTTTAT
1 AATTTTTTAAAAATAAT-AAGAAAAGTTTTACTTAACTTTTCAAAACGATATGGACTTTTTTTAT
14669191 TT
65 TT
* * * * * * * *
14669193 AATTTTTTTAAATTGATATGGAAATTTTTACTTAATTTTTCAAAATGATATGGACTTTTTT
1 AATTTTTTAAAAATAATAAGAAAAGTTTTACTTAACTTTTCAAAACGATATGGACTTTTTT
14669254 CTAGAGGATT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
64 9 0.18
65 23 0.46
66 18 0.36
ACGTcount: A:0.37, C:0.05, G:0.10, T:0.49
Consensus pattern (66 bp):
AATTTTTTAAAAATAATAAGAAAAGTTTTACTTAACTTTTCAAAACGATATGGACTTTTTTTATT
T
Found at i:14669211 original size:34 final size:32
Alignment explanation
Indices: 14669164--14669253 Score: 99
Period size: 32 Copynumber: 2.8 Consensus size: 32
14669154 TTTTCTTAAC
* *
14669164 TTTTAAAACGATATGGAGTTTTTTTATTTAATTT
1 TTTTAAAATGATATGGA-TTTTTTTACTTAA-TT
* **
14669198 TTTTAAATTGATATGGAAATTTTTACTTAATT
1 TTTTAAAATGATATGGATTTTTTTACTTAATT
* *
14669230 TTTCAAAATGATATGGACTTTTTT
1 TTTTAAAATGATATGGATTTTTTT
14669254 CTAGAGGATT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
32 22 0.47
33 10 0.21
34 15 0.32
ACGTcount: A:0.31, C:0.04, G:0.11, T:0.53
Consensus pattern (32 bp):
TTTTAAAATGATATGGATTTTTTTACTTAATT
Found at i:14673135 original size:14 final size:14
Alignment explanation
Indices: 14673116--14673146 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
14673106 ACTTGGCTTC
*
14673116 TTTCTTTCTTTTTA
1 TTTCTTTATTTTTA
14673130 TTTCTTTATTTTTA
1 TTTCTTTATTTTTA
14673144 TTT
1 TTT
14673147 GAAGTTAAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTATTTTTA
Found at i:14674936 original size:19 final size:19
Alignment explanation
Indices: 14674898--14674936 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14674888 TCTACCATTA
*
14674898 AAATAATAAAAACTACAAT
1 AAATAATAAAAACAACAAT
* *
14674917 AAATAATATAAACAATAAT
1 AAATAATAAAAACAACAAT
14674936 A
1 A
14674937 TAAAATAGAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (19 bp):
AAATAATAAAAACAACAAT
Found at i:14675424 original size:24 final size:24
Alignment explanation
Indices: 14675362--14675426 Score: 76
Period size: 24 Copynumber: 2.7 Consensus size: 24
14675352 TAGTAATGTG
* *
14675362 TTGGTATTCCATTGGAAAAATCAA
1 TTGGTAATCCATTGGTAAAATCAA
**
14675386 TTGGTAATTTATTGGTAAAATCAA
1 TTGGTAATCCATTGGTAAAATCAA
* *
14675410 TTTGTAATCCGTTGGTA
1 TTGGTAATCCATTGGTA
14675427 TTTCATCGGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (24 bp):
TTGGTAATCCATTGGTAAAATCAA
Found at i:14686832 original size:159 final size:159
Alignment explanation
Indices: 14686397--14687107 Score: 674
Period size: 159 Copynumber: 4.5 Consensus size: 159
14686387 CAACCAGATA
* * * *
14686397 TCAATTACTACACTATCTAGTTCATCAACAATCACAACATACAATCAGAATCACAAAGCAATATA
1 TCAATTACTACACTATCTACTTCATCAACAATCACAATATACAACCAGAATCACAAAGCAAAATA
* * * * * * * * * ***
14686462 CACAATAGTTTTTACCTTTCACAACATTGATCT-CATCTTAATAGGCACAAAACACTCTCTAGTT
66 CATAATAGTTTTCACTTTTCATAA-AGTCAT-TGCATCTCAATAAGCACAAAATACTAAATAGTT
* *
14686526 CAATATTGAATTTCCTACATTGTTTAGCCTT
129 CAATATTGAATTTCCTACAATGTTTAGGCTT
*
14686557 TCAATTACTACAATATCTACTTCATCAACAATCACAAT-TACAACCA-AATCACAAAGCAAAATA
1 TCAATTACTACACTATCTACTTCATCAACAATCACAATATACAACCAGAATCACAAAGCAAAATA
** * * * * * *
14686620 TGTGATAGTTTTCACCTTTT-ATTAAGTCATTGTATCTCAACAAGCACAAAATACTAGATAGTTT
66 CATAATAGTTTTCA-CTTTTCATAAAGTCATTGCATCTCAATAAGCACAAAATACTAAATAGTTC
*
14686684 AATATTGAATTTCCTACAATGTTTAGGTTT
130 AATATTGAATTTCCTACAATGTTTAGGCTT
* * * * *
14686714 TTAGTTACTGCACTATTTACTTCATCAACAATCACAATACACAACCAGAATCACAAAGCAAAATA
1 TCAATTACTACACTATCTACTTCATCAACAATCACAATATACAACCAGAATCACAAAGCAAAATA
* *
14686779 CATAATAGTTTTCACTTTTCATAAAGTCATTGCATCTCAATAAGCATAAAATACTAAATAATTCA
66 CATAATAGTTTTCACTTTTCATAAAGTCATTGCATCTCAATAAGCACAAAATACTAAATAGTTCA
*
14686844 A-ATTTGAATTTCCTACAATGTTTAAGCTT
131 ATA-TTGAATTTCCTACAATGTTTAGGCTT
* * * * *
14686873 TCAATTACTACACTATCTACTTCATCAACAATTACAATAAATAACTAGAATCAAAAAGCAAAATA
1 TCAATTACTACACTATCTACTTCATCAACAATCACAATATACAACCAGAATCACAAAGCAAAATA
* * * * * * **
14686938 TGC-T-ATAGTTTTAACATTTCA-CAA--CATTG-ATCTTATCTAAGTACACATAA-ACTATCTA
66 --CATAATAGTTTTCACTTTTCATAAAGTCATTGCATCTCA-ATAAG--CACAAAATACTAAATA
* * * * *
14686996 GTTCAACACTGAATTTCCTACAATGATGATGCTT
126 GTTCAATATTGAATTTCCTACAATGTTTAGGCTT
** * ** * * *
14687030 TCAATTACTGTACTATCTACTTCATCAAGAATCACAATACCCAA-CAAAATCACAATGCAAAATG
1 TCAATTACTACACTATCTACTTCATCAACAATCACAATATACAACCAGAATCACAAAGCAAAATA
* *
14687094 CACAATAATTTTCA
66 CATAATAGTTTTCA
14687108 TCATTTACAA
Statistics
Matches: 454, Mismatches: 83, Indels: 32
0.80 0.15 0.06
Matches are distributed among these distances:
154 1 0.00
155 5 0.01
156 33 0.07
157 157 0.35
158 48 0.11
159 173 0.38
160 36 0.08
161 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (159 bp):
TCAATTACTACACTATCTACTTCATCAACAATCACAATATACAACCAGAATCACAAAGCAAAATA
CATAATAGTTTTCACTTTTCATAAAGTCATTGCATCTCAATAAGCACAAAATACTAAATAGTTCA
ATATTGAATTTCCTACAATGTTTAGGCTT
Found at i:14687011 original size:316 final size:315
Alignment explanation
Indices: 14686397--14687107 Score: 783
Period size: 316 Copynumber: 2.2 Consensus size: 315
14686387 CAACCAGATA
* * * * *
14686397 TCAATTACTACACTATCTAGTTCATCAACAATCACAACATACAATCAGAATCACAAAGCAATATA
1 TCAATTACTGCACTATCTACTTCATCAACAATCACAATACACAA-CAGAATCACAAAGCAAAATA
* * * * * *** *
14686462 CACAATAGTTTTTACCTTTCACAACATTGATCTCATCTTAATAGGCACAAAACACTCTCTAGTTC
65 CACAATAGTTTTCACCTTTCACAACAGTCATCTCATCTCAATAAGCACAAAACACTAAATAATTC
*
14686527 AATATTGAATTTCCTACATTGTTTAGCCTTTCAATTACTACAATATCTACTTCATCAACAATCAC
130 AATATTGAATTTCCTACAATGTTTAGCCTTTCAATTACTACAATATCTACTTCATCAACAATCAC
* * * * * *
14686592 AATTACAACCAAATCACAAAGCAAAATATGTGATAGTTTTCACCTTTTATTAAGTCATTGTATCT
195 AATAACAACCAAATCAAAAAGCAAAATATGTGATAGTTTTAACATTTCATCAAG-CATTGTATCT
* * * * * *
14686657 CAACAAGCACAAAATACTAGATAGTTTAATATTGAATTTCCTACAATGTTTAGGTTT
259 CAACAAGCACAAAATACTAGATAGTTCAACACTGAATTTCCTACAATGATGAGGCTT
* * *
14686714 TTAGTTACTGCACTATTTACTTCATCAACAATCACAATACACAACCAGAATCACAAAGCAAAATA
1 TCAATTACTGCACTATCTACTTCATCAACAATCACAATACACAA-CAGAATCACAAAGCAAAATA
* * * * *
14686779 CATAATAGTTTTCACTTTTCATAA-AGTCAT-TGCATCTCAATAAGCATAAAATACTAAATAATT
65 CACAATAGTTTTCACCTTTCACAACAGTCATCT-CATCTCAATAAGCACAAAACACTAAATAATT
*
14686842 CAA-ATTTGAATTTCCTACAATGTTTAAG-CTTTCAATTACTACACTATCTACTTCATCAACAAT
129 CAATA-TTGAATTTCCTACAATGTTT-AGCCTTTCAATTACTACAATATCTACTTCATCAACAAT
* * *
14686905 TACAATAAATAACTAGAATCAAAAAGCAAAATATGCT-ATAGTTTTAACATTTCA-CAA-CATTG
192 CACAAT-AACAACCA-AATCAAAAAGCAAAATATG-TGATAGTTTTAACATTTCATCAAGCATTG
* * * ** *
14686967 -ATCTTATCTAAGTACACATAA-ACTATCTAGTTCAACACTGAATTTCCTACAATGATGATGCTT
254 TATCTCAAC-AAG--CACAAAATACTAGATAGTTCAACACTGAATTTCCTACAATGATGAGGCTT
* * * * * *
14687030 TCAATTACTGTACTATCTACTTCATCAAGAATCACAATACCCAACAAAATCACAATGCAAAATGC
1 TCAATTACTGCACTATCTACTTCATCAACAATCACAATACACAACAGAATCACAAAGCAAAATAC
*
14687095 ACAATAATTTTCA
66 ACAATAGTTTTCA
14687108 TCATTTACAA
Statistics
Matches: 328, Mismatches: 57, Indels: 20
0.81 0.14 0.05
Matches are distributed among these distances:
314 6 0.02
315 39 0.12
316 159 0.48
317 91 0.28
318 32 0.10
319 1 0.00
ACGTcount: A:0.40, C:0.21, G:0.07, T:0.32
Consensus pattern (315 bp):
TCAATTACTGCACTATCTACTTCATCAACAATCACAATACACAACAGAATCACAAAGCAAAATAC
ACAATAGTTTTCACCTTTCACAACAGTCATCTCATCTCAATAAGCACAAAACACTAAATAATTCA
ATATTGAATTTCCTACAATGTTTAGCCTTTCAATTACTACAATATCTACTTCATCAACAATCACA
ATAACAACCAAATCAAAAAGCAAAATATGTGATAGTTTTAACATTTCATCAAGCATTGTATCTCA
ACAAGCACAAAATACTAGATAGTTCAACACTGAATTTCCTACAATGATGAGGCTT
Found at i:14688748 original size:142 final size:143
Alignment explanation
Indices: 14688528--14688867 Score: 397
Period size: 142 Copynumber: 2.4 Consensus size: 143
14688518 GATGCATTAT
* * *
14688528 AAGGTGTGAAATTACCAAAATACCTTTAAGGGTATTTT-ATAATTTGACTTTCTTAAGATCAATT
1 AAGGTGTGAAATTACTAAAATACCTTTAAGGGTATTTTCATAATTTAACTTTCTGAAGATCAATT
* *
14688592 TATTGTAAAACACTCCAAATCATGATTT-TATATTATTCT-ATGATTTTTGGTGCATTAAAAACC
66 TATTGCAAAACACTCCAAATCATG-TTTCTATATTATT-TGATGATTTTTAGTGCATTAAAAACC
* *
14688655 TTGGTCACACC-TCGA
129 TTGATCAC-CCATCAA
* * * *
14688670 AAGGTGTAAAATTACTAAAATACCCTT-AGGGTATTTTCATACTTTAACCTTT-TAGAAG-TCAT
1 AAGGTGTGAAATTACTAAAATACCTTTAAGGGTATTTTCATAATTTAA-CTTTCT-GAAGATCAA
* * * * * *
14688732 TTTTTTGCGAAACACTCCATATTATGTTTCTGTATTATTTGATGATTTTTAGTGCATTAAAAACT
64 TTTATTGCAAAACACTCCAAATCATGTTTCTATATTATTTGATGATTTTTAGTGCATTAAAAACC
*
14688797 TTGATCACCCATTAA
129 TTGATCACCCATCAA
* * *
14688812 AAGGTGTGAAATTACTAAAATACCTTTAAGGGTAATTTCATAATTTGACTTCCTGA
1 AAGGTGTGAAATTACTAAAATACCTTTAAGGGTATTTTCATAATTTAACTTTCTGA
14688868 GTTGGTTTTT
Statistics
Matches: 166, Mismatches: 24, Indels: 16
0.81 0.12 0.08
Matches are distributed among these distances:
141 16 0.10
142 125 0.75
143 25 0.15
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.39
Consensus pattern (143 bp):
AAGGTGTGAAATTACTAAAATACCTTTAAGGGTATTTTCATAATTTAACTTTCTGAAGATCAATT
TATTGCAAAACACTCCAAATCATGTTTCTATATTATTTGATGATTTTTAGTGCATTAAAAACCTT
GATCACCCATCAA
Found at i:14688877 original size:142 final size:142
Alignment explanation
Indices: 14688522--14688911 Score: 393
Period size: 142 Copynumber: 2.7 Consensus size: 142
14688512 AACCCTGATG
* * * *
14688522 CATTATAAGGTGTGAAATTACCAAAATACCTTTAAGGGT-ATTTTATAATTTGACTTTCTTAAGA
1 CATTAAAAGGTGTGAAATTACTAAAATACCTTTAAGGGTAATTTCATAATTTGAC-TTCTTGAG-
* * * *
14688586 TCAATTTATTGTAAAACACTCCAAATCATGATTTTATATTATTCTATGATTTTTGGTGCATTAAA
64 TCATTTTTTTGCAAAACACTCCAAATCATGATTTTATATTATTCTATGATTTTTAGTGCATTAAA
*
14688651 AACCTTGGTCACAC
129 AACCTTGATCACAC
** * * * * *
14688665 C-TCGAAAGGTGTAAAATTACTAAAATACCCTT-AGGGTATTTTCATACTTTAACCTT-TTAGAA
1 CATTAAAAGGTGTGAAATTACTAAAATACCTTTAAGGGTAATTTCATAATTTGA-CTTCTT-G-A
* * * *
14688727 GTCATTTTTTTGCGAAACACTCCATATTATG-TTTCTGTATTATT-TGATGATTTTTAGTGCATT
63 GTCATTTTTTTGCAAAACACTCCAAATCATGATTT-TATATTATTCT-ATGATTTTTAGTGCATT
*
14688790 AAAAACTTTGATCAC-C
126 AAAAACCTTGATCACAC
* *
14688806 CATTAAAAGGTGTGAAATTACTAAAATACCTTTAAGGGTAATTTCATAATTTGACTTCCTGAGTT
1 CATTAAAAGGTGTGAAATTACTAAAATACCTTTAAGGGTAATTTCATAATTTGACTTCTTGAGTC
** * *
14688871 GGTTTTTGGCAAAA-ACTTTCAAATCAT-ATTTTCATATTATT
66 ATTTTTTTGCAAAACAC-TCCAAATCATGATTTT-ATATTATT
14688912 TGAGAATTTT
Statistics
Matches: 197, Mismatches: 38, Indels: 26
0.75 0.15 0.10
Matches are distributed among these distances:
140 3 0.02
141 43 0.22
142 129 0.65
143 22 0.11
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.41
Consensus pattern (142 bp):
CATTAAAAGGTGTGAAATTACTAAAATACCTTTAAGGGTAATTTCATAATTTGACTTCTTGAGTC
ATTTTTTTGCAAAACACTCCAAATCATGATTTTATATTATTCTATGATTTTTAGTGCATTAAAAA
CCTTGATCACAC
Found at i:14690328 original size:7 final size:7
Alignment explanation
Indices: 14690316--14690394 Score: 64
Period size: 7 Copynumber: 12.1 Consensus size: 7
14690306 TAAACCACAT
14690316 CTTAAAC
1 CTTAAAC
14690323 CTTAAAC
1 CTTAAAC
14690330 C--AAAC
1 CTTAAAC
*
14690335 CCTAAAGC
1 CTTAAA-C
14690343 C-TAAA-
1 CTTAAAC
14690348 C-TAAAC
1 CTTAAAC
14690354 CTTAAAC
1 CTTAAAC
14690361 CTTAAA-
1 CTTAAAC
*
14690367 CTAAAAC
1 CTTAAAC
*
14690374 CCT-AAC
1 CTTAAAC
*
14690380 CCTAAAC
1 CTTAAAC
14690387 CTTAAAC
1 CTTAAAC
14690394 C
1 C
14690395 AAGCCTAAAA
Statistics
Matches: 61, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
5 10 0.16
6 12 0.20
7 37 0.61
8 2 0.03
ACGTcount: A:0.46, C:0.33, G:0.01, T:0.20
Consensus pattern (7 bp):
CTTAAAC
Found at i:14690330 original size:19 final size:19
Alignment explanation
Indices: 14690291--14690367 Score: 77
Period size: 19 Copynumber: 4.1 Consensus size: 19
14690281 AAACCACCAT
*
14690291 CCAAACCTTTAAGCC-TAAA
1 CCAAACC-TTAAACCTTAAA
* *
14690310 CCACATCTTAAACCTTAAA
1 CCAAACCTTAAACCTTAAA
*
14690329 CCAAACCCTAAAGCC-TAAA
1 CCAAACCTTAAA-CCTTAAA
*
14690348 CTAAACCTTAAACCTTAAA
1 CCAAACCTTAAACCTTAAA
14690367 C
1 C
14690368 TAAAACCCTA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
18 8 0.17
19 37 0.79
20 2 0.04
ACGTcount: A:0.44, C:0.32, G:0.03, T:0.21
Consensus pattern (19 bp):
CCAAACCTTAAACCTTAAA
Found at i:14690333 original size:38 final size:38
Alignment explanation
Indices: 14690291--14690387 Score: 115
Period size: 38 Copynumber: 2.6 Consensus size: 38
14690281 AAACCACCAT
* * * *
14690291 CCAAACCTTTAAGCCTAAACCACATCTTAAACCTTAAA
1 CCAAACCCTAAAGCCTAAACCAAACCTTAAACCTTAAA
*
14690329 CCAAACCCTAAAGCCTAAACTAAACCTTAAACCTTAAA
1 CCAAACCCTAAAGCCTAAACCAAACCTTAAACCTTAAA
* *
14690367 CTAAAACCCT-AACCCTAAACC
1 C-CAAACCCTAAAGCCTAAACC
14690388 TTAAACCAAG
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
38 43 0.86
39 7 0.14
ACGTcount: A:0.44, C:0.34, G:0.02, T:0.20
Consensus pattern (38 bp):
CCAAACCCTAAAGCCTAAACCAAACCTTAAACCTTAAA
Found at i:14690334 original size:12 final size:12
Alignment explanation
Indices: 14690319--14690418 Score: 62
Period size: 12 Copynumber: 8.0 Consensus size: 12
14690309 ACCACATCTT
14690319 AAACCTTAAACC
1 AAACCTTAAACC
*
14690331 AAACCCTAAAGCC
1 AAACCTTAAA-CC
14690344 TAAA-C-TAAACC
1 -AAACCTTAAACC
*
14690355 TTAAACCTTAAACTA
1 --AAACCTTAAAC-C
* *
14690370 AAACCCTAACCC
1 AAACCTTAAACC
14690382 TAAACCTTAAACC
1 -AAACCTTAAACC
* *
14690395 AAGCCTAAAACC
1 AAACCTTAAACC
14690407 AAGACC-TAAACC
1 AA-ACCTTAAACC
14690419 CAAAATCAAG
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
11 2 0.03
12 34 0.49
13 25 0.36
14 8 0.12
ACGTcount: A:0.48, C:0.33, G:0.03, T:0.16
Consensus pattern (12 bp):
AAACCTTAAACC
Found at i:14690380 original size:19 final size:19
Alignment explanation
Indices: 14690318--14690378 Score: 79
Period size: 19 Copynumber: 3.2 Consensus size: 19
14690308 AACCACATCT
*
14690318 TAAACCTTAAACCAAACCC
1 TAAACCTTAAACTAAACCC
*
14690337 TAAAGCC-TAAACTAAACCT
1 TAAA-CCTTAAACTAAACCC
14690356 TAAACCTTAAACTAAAACCC
1 TAAACCTTAAACT-AAACCC
14690376 TAA
1 TAA
14690379 CCCTAAACCT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
18 2 0.06
19 24 0.67
20 10 0.28
ACGTcount: A:0.49, C:0.30, G:0.02, T:0.20
Consensus pattern (19 bp):
TAAACCTTAAACTAAACCC
Found at i:14690385 original size:19 final size:19
Alignment explanation
Indices: 14690318--14690386 Score: 77
Period size: 19 Copynumber: 3.6 Consensus size: 19
14690308 AACCACATCT
* *
14690318 TAAACCTTAAACCAAACCC
1 TAAACCCTAAACTAAACCC
* *
14690337 TAAAGCCTAAACTAAACCT
1 TAAACCCTAAACTAAACCC
*
14690356 TAAACCTTAAACTAAAACCC
1 TAAACCCTAAACT-AAACCC
14690376 T-AACCCTAAAC
1 TAAACCCTAAAC
14690387 CTTAAACCAA
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
19 35 0.85
20 6 0.15
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (19 bp):
TAAACCCTAAACTAAACCC
Found at i:14690442 original size:19 final size:20
Alignment explanation
Indices: 14690398--14690443 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
14690388 TTAAACCAAG
* *
14690398 CCTAAAACCAAGACCTAAAC
1 CCTAAAATCAAGACCAAAAC
14690418 CC-AAAATCAAGA-CAAAAC
1 CCTAAAATCAAGACCAAAAC
14690436 CCTAAAAT
1 CCTAAAAT
14690444 AAACCCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 7 0.30
19 14 0.61
20 2 0.09
ACGTcount: A:0.54, C:0.30, G:0.04, T:0.11
Consensus pattern (20 bp):
CCTAAAATCAAGACCAAAAC
Found at i:14690454 original size:19 final size:19
Alignment explanation
Indices: 14690331--14690455 Score: 55
Period size: 19 Copynumber: 6.6 Consensus size: 19
14690321 ACCTTAAACC
* *
14690331 AAACCCTAAAGCCTAAACT
1 AAACCCTAAACCCTAAAAT
* * *
14690350 AAACCTTAAACCTTAAACT
1 AAACCCTAAACCCTAAAAT
*
14690369 AAAACCCT-AACCCTAAACCTT
1 -AAACCCTAAACCCTAAA--AT
* *
14690390 AAA-CC--AAGCCTAAAACC
1 AAACCCTAAACCCTAAAA-T
14690407 AAGA-CCTAAACCC-AAAAT
1 AA-ACCCTAAACCCTAAAAT
* ** *
14690425 CAAGACAAAACCCTAAAAT
1 AAACCCTAAACCCTAAAAT
14690444 AAACCCTAAACC
1 AAACCCTAAACC
14690456 AACCTAAACC
Statistics
Matches: 79, Mismatches: 18, Indels: 18
0.69 0.16 0.16
Matches are distributed among these distances:
17 3 0.04
18 19 0.24
19 43 0.54
20 13 0.16
21 1 0.01
ACGTcount: A:0.50, C:0.32, G:0.03, T:0.14
Consensus pattern (19 bp):
AAACCCTAAACCCTAAAAT
Found at i:14704533 original size:103 final size:103
Alignment explanation
Indices: 14704394--14704599 Score: 331
Period size: 103 Copynumber: 2.0 Consensus size: 103
14704384 TAAGTACTTA
*
14704394 GCTTGGACTTCTTAGCTAATCCTTATGGGAACGATATCATAACTTCGGTAACTATTATTACTTGA
1 GCTTGGACTTCTTAACTAATCCTTATGGGAACGATATCATAACTTCGGTAACTATTATTACTTGA
* *
14704459 ATGATCTTTGTACTTGCAAAATTCCACCAATCAAGTTT
66 ATGATCTGTGCACTTGCAAAATTCCACCAATCAAGTTT
* * * *
14704497 GCTTGGACTTCTTAACTAATCCTTATGGGAATGATATCTTAACTTTGGTCACTATTATTACTTGA
1 GCTTGGACTTCTTAACTAATCCTTATGGGAACGATATCATAACTTCGGTAACTATTATTACTTGA
* *
14704562 ATGATCTGTGCACTTGTAGAATTCCACCAATCAAGTTT
66 ATGATCTGTGCACTTGCAAAATTCCACCAATCAAGTTT
14704600 TTAACATCGT
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
103 94 1.00
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.38
Consensus pattern (103 bp):
GCTTGGACTTCTTAACTAATCCTTATGGGAACGATATCATAACTTCGGTAACTATTATTACTTGA
ATGATCTGTGCACTTGCAAAATTCCACCAATCAAGTTT
Found at i:14706796 original size:29 final size:29
Alignment explanation
Indices: 14706764--14706856 Score: 66
Period size: 29 Copynumber: 3.1 Consensus size: 29
14706754 CTAACACTAA
14706764 TGAAAGTCAAGCTTTTGATTTTAAACAAG
1 TGAAAGTCAAGCTTTTGATTTTAAACAAG
* * * *
14706793 TGAATG-AAATG-TAATGTAATTCTCTAACACTAA-
1 TGAAAGTCAA-GCT--TTTGATT-T-TAA-AC-AAG
14706826 TGAAAGTCAAGCTTTTGATTTTAAACAAG
1 TGAAAGTCAAGCTTTTGATTTTAAACAAG
14706855 TG
1 TG
14706857 CTTTAACCAA
Statistics
Matches: 46, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
28 5 0.11
29 10 0.22
30 8 0.17
31 2 0.04
32 8 0.17
33 8 0.17
34 5 0.11
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (29 bp):
TGAAAGTCAAGCTTTTGATTTTAAACAAG
Found at i:14706829 original size:62 final size:62
Alignment explanation
Indices: 14706732--14706856 Score: 241
Period size: 62 Copynumber: 2.0 Consensus size: 62
14706722 GTAGACGCAA
14706732 GAATGAAATATAATGTAATTCTCTAACACTAATGAAAGTCAAGCTTTTGATTTTAAACAAGT
1 GAATGAAATATAATGTAATTCTCTAACACTAATGAAAGTCAAGCTTTTGATTTTAAACAAGT
*
14706794 GAATGAAATGTAATGTAATTCTCTAACACTAATGAAAGTCAAGCTTTTGATTTTAAACAAGT
1 GAATGAAATATAATGTAATTCTCTAACACTAATGAAAGTCAAGCTTTTGATTTTAAACAAGT
14706856 G
1 G
14706857 CTTTAACCAA
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.41, C:0.11, G:0.14, T:0.34
Consensus pattern (62 bp):
GAATGAAATATAATGTAATTCTCTAACACTAATGAAAGTCAAGCTTTTGATTTTAAACAAGT
Found at i:14708734 original size:39 final size:39
Alignment explanation
Indices: 14708642--14708717 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
14708632 GTTCTTAGAG
14708642 AAAATATGGCAAAAATACTCCTAATTGCTTAAATATTAA
1 AAAATATGGCAAAAATACTCCTAATTGCTTAAATATTAA
*
14708681 AAAATATGGCAAAAATACTCTTAATTGCTTAAATATT
1 AAAATATGGCAAAAATACTCCTAATTGCTTAAATATT
14708718 TAATGTGTAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.47, C:0.12, G:0.08, T:0.33
Consensus pattern (39 bp):
AAAATATGGCAAAAATACTCCTAATTGCTTAAATATTAA
Found at i:14711813 original size:13 final size:13
Alignment explanation
Indices: 14711795--14711819 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14711785 AATACTCCTT
14711795 GAATTAAAGAAAA
1 GAATTAAAGAAAA
14711808 GAATTAAAGAAA
1 GAATTAAAGAAA
14711820 TAATCTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (13 bp):
GAATTAAAGAAAA
Found at i:14714172 original size:16 final size:18
Alignment explanation
Indices: 14714141--14714176 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
14714131 TCATCTCTAT
14714141 CAAAACAAACTCAAAACA
1 CAAAACAAACTCAAAACA
14714159 CAAAA-AAA-TCAAAACA
1 CAAAACAAACTCAAAACA
14714175 CA
1 CA
14714177 CCTATCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.56
17 3 0.17
18 5 0.28
ACGTcount: A:0.69, C:0.25, G:0.00, T:0.06
Consensus pattern (18 bp):
CAAAACAAACTCAAAACA
Found at i:14719501 original size:49 final size:45
Alignment explanation
Indices: 14719427--14719557 Score: 154
Period size: 45 Copynumber: 2.8 Consensus size: 45
14719417 AGATCTTTAC
* *
14719427 TCTAGATCTTTTATACAGTTAATTTTATATACTTTATATTAATCCTTAT
1 TCTAGATCTTTTATACACTTTATTTTATATACTTTATA-T-A--CTTAT
*
14719476 TCTAGATCTTTTATACACTTTATTTTATATACTTTATATAGTTAT
1 TCTAGATCTTTTATACACTTTATTTTATATACTTTATATACTTAT
* * * **
14719521 TCTAGATATTTTACAAACTTTATTCAATATACTTTAT
1 TCTAGATCTTTTATACACTTTATTTTATATACTTTAT
14719558 TCTAGATTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 36 0.49
47 1 0.01
48 1 0.01
49 36 0.49
ACGTcount: A:0.31, C:0.12, G:0.04, T:0.53
Consensus pattern (45 bp):
TCTAGATCTTTTATACACTTTATTTTATATACTTTATATACTTAT
Found at i:14720007 original size:22 final size:22
Alignment explanation
Indices: 14719965--14720007 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
14719955 AAATAACGCA
* *
14719965 CAATATCAATAGCATATTTATT
1 CAATATCAATAACATAATTATT
14719987 CAATATCACATAACA-AATTAT
1 CAATATCA-ATAACATAATTAT
14720008 ACGTTATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 13 0.72
23 5 0.28
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
CAATATCAATAACATAATTATT
Found at i:14720030 original size:82 final size:83
Alignment explanation
Indices: 14719884--14720045 Score: 254
Period size: 82 Copynumber: 2.0 Consensus size: 83
14719874 CATCACACAT
* * * * *
14719884 AATATCAATAACCTATTTCTTCAATATCACATAGCAAATTATATGTTATAAATGTGAAT-AAAAA
1 AATATCAATAACATATTTATTCAATATCACATAACAAATTATACGTTATAAATGCGAATAAAAAA
14719948 ATATTTTAAATAACGCAC
66 ATATTTTAAATAACGCAC
*
14719966 AATATCAATAGCATATTTATTCAATATCACATAACAAATTATACGTTATAAATGCGAATGAAAAA
1 AATATCAATAACATATTTATTCAATATCACATAACAAATTATACGTTATAAATGCGAAT-AAAAA
14720031 AATATTTTAAATAAC
65 AATATTTTAAATAAC
14720046 ATGCATTATA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
82 53 0.74
84 19 0.26
ACGTcount: A:0.48, C:0.12, G:0.06, T:0.33
Consensus pattern (83 bp):
AATATCAATAACATATTTATTCAATATCACATAACAAATTATACGTTATAAATGCGAATAAAAAA
ATATTTTAAATAACGCAC
Found at i:14722562 original size:17 final size:17
Alignment explanation
Indices: 14722540--14722578 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
14722530 GATCACTATC
14722540 TACATGAACCAATTCTA
1 TACATGAACCAATTCTA
*
14722557 TACATGAACCAGTTCTA
1 TACATGAACCAATTCTA
14722574 T-CATG
1 TACATG
14722579 TATTCAAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (17 bp):
TACATGAACCAATTCTA
Found at i:14724288 original size:17 final size:18
Alignment explanation
Indices: 14724266--14724300 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
14724256 TTATAGGTTG
*
14724266 CATAAGATG-TTTGATTA
1 CATAAGAGGATTTGATTA
14724283 CATAAGAGGATTTGATTA
1 CATAAGAGGATTTGATTA
14724301 GAATGATGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.37, C:0.06, G:0.20, T:0.37
Consensus pattern (18 bp):
CATAAGAGGATTTGATTA
Found at i:14726513 original size:3 final size:3
Alignment explanation
Indices: 14726499--14726541 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
14726489 AATATACCTA
* * * *
14726499 TGT TGT TAT TGT TGT TGT TAT TGT TGT TGT TAT TGT TAT TGT T
1 TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT TGT T
14726542 ATTATTATTA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.09, C:0.00, G:0.23, T:0.67
Consensus pattern (3 bp):
TGT
Found at i:14726516 original size:6 final size:6
Alignment explanation
Indices: 14726501--14726598 Score: 106
Period size: 6 Copynumber: 16.3 Consensus size: 6
14726491 TATACCTATG
* * *
14726501 TTGTTA TTGTTG TTGTTA TTGTTG TTGTTA TTGTTA TTGTTA TTATTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
* * * * * * *
14726549 TTATTA TTGTTA TTATTA TTATTA TTATTA TTATTA TTATTA TTATTA
1 TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA TTGTTA
14726597 TT
1 TT
14726599 ATAAATATTT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 85 1.00
ACGTcount: A:0.22, C:0.00, G:0.10, T:0.67
Consensus pattern (6 bp):
TTGTTA
Found at i:14726546 original size:3 final size:3
Alignment explanation
Indices: 14726528--14726600 Score: 119
Period size: 3 Copynumber: 24.3 Consensus size: 3
14726518 ATTGTTGTTG
* * *
14726528 TTA TTG TTA TTG TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14726576 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
14726601 AAATATTTCA
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:14727745 original size:18 final size:18
Alignment explanation
Indices: 14727693--14727866 Score: 63
Period size: 18 Copynumber: 9.1 Consensus size: 18
14727683 CAAAAACCTT
14727693 TTAAAAAATTCTTAAAAAA
1 TTAAAAAATTC-TAAAAAA
* *
14727712 ATAAAATAATT-AAAAAAA
1 TTAAAA-AATTCTAAAAAA
*
14727730 TTAAGAAATTCTAAAAAA
1 TTAAAAAATTCTAAAAAA
* *
14727748 TTTCTAAAAATTTTAAAATAAA
1 -TT-AAAAAATTCT-AAA-AAA
*
14727770 TTTTTGAAAAATT-T-AAAAA
1 ---TTAAAAAATTCTAAAAAA
* * *
14727789 TAAAAAAATT-TAGAAAT
1 TTAAAAAATTCTAAAAAA
14727806 TTCAAATGAAAATT-TAAAAAA
1 TT--AA--AAAATTCTAAAAAA
*
14727827 TTTAAAAAATTATTAAAAAA
1 -TTAAAAAATT-CTAAAAAA
*
14727847 TCT-AAAAATTTTAAAAAA
1 T-TAAAAAATTCTAAAAAA
14727865 TT
1 TT
14727867 CAAACAATTT
Statistics
Matches: 122, Mismatches: 16, Indels: 36
0.70 0.09 0.21
Matches are distributed among these distances:
16 9 0.07
17 9 0.07
18 31 0.25
19 20 0.16
20 23 0.19
21 14 0.11
22 6 0.05
23 7 0.06
24 3 0.02
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.33
Consensus pattern (18 bp):
TTAAAAAATTCTAAAAAA
Found at i:14727746 original size:68 final size:64
Alignment explanation
Indices: 14727667--14727846 Score: 191
Period size: 68 Copynumber: 2.7 Consensus size: 64
14727657 CATCTTAAAA
*
14727667 AAATTCAAAAAAATTTCAAAAACCTTTTAAAAAATTCTTAAAAAAATAAAATAATTAAAAAAATT
1 AAATTCAAAAAAATTTCAAAAA--TTTTAAAAAATTATTAAAAAAATAAAA-AA-TAAAAAAATT
14727732 AAG
62 AAG
* * * * * *
14727735 AAATTCTAAAAAATTTCTAAAAATTTTAAAATAAATTTTTGAAAAATTTAAAAATAAAAAAATTT
1 AAATTCAAAAAAATTTC-AAAAATTTT-AAA-AAATTATTAAAAAAATAAAAAATAAAAAAATTA
14727800 AG
63 AG
*
14727802 AAATTTCAAATGAAAATTT-AAAAAATTTAAAAAATTATTAAAAAA
1 AAA-TTCAAA--AAAATTTCAAAAATTTTAAAAAATTATTAAAAAA
14727847 TCTAAAAATT
Statistics
Matches: 96, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
66 12 0.12
67 22 0.23
68 34 0.35
69 21 0.22
70 7 0.07
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (64 bp):
AAATTCAAAAAAATTTCAAAAATTTTAAAAAATTATTAAAAAAATAAAAAATAAAAAAATTAAG
Found at i:14727764 original size:9 final size:9
Alignment explanation
Indices: 14727743--14727925 Score: 66
Period size: 9 Copynumber: 18.6 Consensus size: 9
14727733 AGAAATTCTA
14727743 AAAAATTTCT
1 AAAAATTT-T
14727753 AAAAATTTT
1 AAAAATTTT
14727762 AAAATAAATTTTT
1 --AA-AAA-TTTT
14727775 GAAAAA-TTT
1 -AAAAATTTT
*
14727784 AAAAA--TA
1 AAAAATTTT
*
14727791 AAAAAATTT
1 AAAAATTTT
* *
14727800 AGAAATTTCA
1 AAAAATTT-T
*
14727810 AATGAAAATTTA
1 AA--AA-ATTTT
*
14727822 AAAAATTTA
1 AAAAATTTT
14727831 AAAAATTATT
1 AAAAATT-TT
* *
14727841 AAAAAATCT
1 AAAAATTTT
14727850 AAAAATTTT
1 AAAAATTTT
* *
14727859 AAAAAATTC
1 AAAAATTTT
14727868 AAACAATTTTT
1 AAA-AA-TTTT
14727879 CAAAAATTTTT
1 -AAAAA-TTTT
*
14727890 AAAAATTTCA
1 AAAAATTT-T
*
14727900 AAATAATTTCA
1 AAA-AATTT-T
14727911 AAAAATTTTT
1 AAAAA-TTTT
14727921 AAAAA
1 AAAAA
14727926 AAATTCGAAA
Statistics
Matches: 138, Mismatches: 18, Indels: 34
0.73 0.09 0.18
Matches are distributed among these distances:
7 6 0.04
8 5 0.04
9 44 0.32
10 35 0.25
11 27 0.20
12 13 0.09
13 8 0.06
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.36
Consensus pattern (9 bp):
AAAAATTTT
Found at i:14727783 original size:23 final size:22
Alignment explanation
Indices: 14727745--14727792 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 22
14727735 AAATTCTAAA
*
14727745 AAATTTCTAAAAATTTTAAAAT
1 AAATTTCTAAAAATTTAAAAAT
*
14727767 AAATTTTTGAAAAATTTAAAAAT
1 AAATTTCT-AAAAATTTAAAAAT
14727790 AAA
1 AAA
14727793 AAAATTTAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 7 0.30
23 16 0.70
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATTTCTAAAAATTTAAAAAT
Found at i:14727842 original size:11 final size:10
Alignment explanation
Indices: 14727664--14728042 Score: 120
Period size: 10 Copynumber: 38.5 Consensus size: 10
14727654 TGCCATCTTA
**
14727664 AAAAAATTCA
1 AAAAAATTTT
*
14727674 AAAAAATTTC
1 AAAAAATTTT
*
14727684 AAAAACCTTTT
1 AAAAA-ATTTT
14727695 AAAAAATTCTT
1 AAAAAATT-TT
*
14727706 AAAAAA--AT
1 AAAAAATTTT
14727714 AAAATAA--TT
1 AAAA-AATTTT
*
14727723 AAAAAA-ATT
1 AAAAAATTTT
* *
14727732 AAGAAATTCT
1 AAAAAATTTT
14727742 AAAAAATTTCT
1 AAAAAATTT-T
14727753 -AAAAATTTT
1 AAAAAATTTT
14727762 AAAATAAATTTTT
1 -AAA-AAA-TTTT
*
14727775 GAAAAA-TTT
1 AAAAAATTTT
14727784 -AAAAA---T
1 AAAAAATTTT
*
14727790 AAAAAAATTT
1 AAAAAATTTT
* *
14727800 -AGAAATTTC
1 AAAAAATTTT
*
14727809 AAATGAAAATTT
1 AAA--AAATTTT
14727821 AAAAAA-TTT
1 AAAAAATTTT
14727830 AAAAAATTATT
1 AAAAAATT-TT
*
14727841 AAAAAA-TCT
1 AAAAAATTTT
14727850 -AAAAATTTT
1 AAAAAATTTT
*
14727859 AAAAAA-TTC
1 AAAAAATTTT
*
14727868 AAACAATTTTT
1 AAA-AAATTTT
*
14727879 CAAAAATTTT
1 AAAAAATTTT
* *
14727889 TAAAAATTTC
1 AAAAAATTTT
*
14727899 AAAATAATTTC
1 AAAA-AATTTT
14727910 AAAAAATTTTT
1 AAAAAA-TTTT
**
14727921 AAAAAAAATTCG
1 --AAAAAATTTT
*
14727933 AAAACATTTT
1 AAAAAATTTT
14727943 --AAAATTTT
1 AAAAAATTTT
** * **
14727951 CTAAAACTCC
1 AAAAAATTTT
*
14727961 AAAAAA-ATT
1 AAAAAATTTT
14727970 AAAAAA--TT
1 AAAAAATTTT
14727978 AAAAAAGTTTT
1 AAAAAA-TTTT
*
14727989 GAAAAAATTCT
1 -AAAAAATTTT
** **
14728000 -ACGAATTGC
1 AAAAAATTTT
*
14728009 ATAAAATTTT
1 AAAAAATTTT
*
14728019 AGAAAATTTT
1 AAAAAATTTT
14728029 AAAAAA-TTT
1 AAAAAATTTT
14728038 AAAAA
1 AAAAA
14728043 GTATTAAGGA
Statistics
Matches: 279, Mismatches: 56, Indels: 69
0.69 0.14 0.17
Matches are distributed among these distances:
6 1 0.00
7 5 0.02
8 32 0.11
9 60 0.22
10 98 0.35
11 52 0.19
12 21 0.08
13 10 0.04
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.33
Consensus pattern (10 bp):
AAAAAATTTT
Found at i:14727919 original size:31 final size:31
Alignment explanation
Indices: 14727850--14727926 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 31
14727840 TAAAAAATCT
*
14727850 AAAAA-TTTTAAAAAATTCAAACAATTTTTC
1 AAAAATTTTTAAAAAATTCAAACAATATTTC
*
14727880 AAAAATTTTTAAAAATTTC-AA-AATAATTTC
1 AAAAATTTTTAAAAAATTCAAACAAT-ATTTC
14727910 AAAAAATTTTTAAAAAA
1 -AAAAATTTTTAAAAAA
14727927 AATTCGAAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
29 3 0.07
30 11 0.27
31 27 0.66
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.36
Consensus pattern (31 bp):
AAAAATTTTTAAAAAATTCAAACAATATTTC
Found at i:14728173 original size:10 final size:9
Alignment explanation
Indices: 14728158--14728211 Score: 51
Period size: 10 Copynumber: 6.1 Consensus size: 9
14728148 GGTGAAATTT
14728158 AAAAAAATA
1 AAAAAAATA
14728167 AACAAAAAT-
1 AA-AAAAATA
14728176 AAAAAAAT-
1 AAAAAAATA
14728184 -AAAAAATA
1 AAAAAAATA
**
14728192 AAAACATTTA
1 AAAA-AAATA
14728202 AAAAAAATA
1 AAAAAAATA
14728211 A
1 A
14728212 TTCTAAAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
7 7 0.19
8 6 0.16
9 11 0.30
10 13 0.35
ACGTcount: A:0.81, C:0.04, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAAAAATA
Found at i:14728181 original size:8 final size:8
Alignment explanation
Indices: 14728157--14728195 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
14728147 TGGTGAAATT
14728157 TAAAAAAA
1 TAAAAAAA
14728165 TAAACAAAAA
1 T-AA-AAAAA
14728175 TAAAAAAA
1 TAAAAAAA
14728183 T-AAAAAA
1 TAAAAAAA
14728190 TAAAAA
1 TAAAAA
14728196 CATTTAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 7 0.25
8 11 0.39
9 4 0.14
10 6 0.21
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (8 bp):
TAAAAAAA
Found at i:14728468 original size:17 final size:16
Alignment explanation
Indices: 14728410--14728469 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 16
14728400 AAATTATGAT
14728410 AATTTTTATAATTTATA
1 AATTTTTATAATTTA-A
*
14728427 AATATATTTCATAATTTTA
1 AAT-T-TTT-ATAATTTAA
*
14728446 ATTTTTTATAAATTTAA
1 AATTTTTAT-AATTTAA
14728463 AATTTTT
1 AATTTTT
14728470 CTAAAATTCT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 2 0.06
17 18 0.51
18 2 0.06
19 6 0.17
20 7 0.20
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (16 bp):
AATTTTTATAATTTAA
Found at i:14728764 original size:11 final size:11
Alignment explanation
Indices: 14728748--14728804 Score: 64
Period size: 11 Copynumber: 5.4 Consensus size: 11
14728738 TTAAAAATCC
14728748 TTTTTAGAAAT
1 TTTTTAGAAAT
14728759 TTTTTAGAAA-
1 TTTTTAGAAAT
* *
14728769 TTTTTGGATAT
1 TTTTTAGAAAT
*
14728780 TTTTAAG-AAT
1 TTTTTAGAAAT
*
14728790 TTTTTATAAAT
1 TTTTTAGAAAT
14728801 TTTT
1 TTTT
14728805 ACATTTTTTG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
10 15 0.41
11 22 0.59
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.60
Consensus pattern (11 bp):
TTTTTAGAAAT
Found at i:14728772 original size:10 final size:10
Alignment explanation
Indices: 14728748--14728805 Score: 62
Period size: 10 Copynumber: 5.6 Consensus size: 10
14728738 TTAAAAATCC
14728748 TTTTTAGAAA
1 TTTTTAGAAA
14728758 TTTTTTAGAAA
1 -TTTTTAGAAA
* *
14728769 TTTTTGGATA
1 TTTTTAGAAA
*
14728779 TTTTTAAGAAT
1 TTTTT-AGAAA
*
14728790 TTTTTATAAA
1 TTTTTAGAAA
14728800 TTTTTA
1 TTTTTA
14728806 CATTTTTTGA
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
10 22 0.56
11 17 0.44
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (10 bp):
TTTTTAGAAA
Found at i:14728781 original size:21 final size:21
Alignment explanation
Indices: 14728748--14728805 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
14728738 TTAAAAATCC
*
14728748 TTTTTAGAAATTTTTTAGAAA
1 TTTTTAGAAATTTTTAAGAAA
* * *
14728769 TTTTTGGATATTTTTAAGAAT
1 TTTTTAGAAATTTTTAAGAAA
*
14728790 TTTTTATAAATTTTTA
1 TTTTTAGAAATTTTTA
14728806 CATTTTTTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.59
Consensus pattern (21 bp):
TTTTTAGAAATTTTTAAGAAA
Found at i:14731577 original size:58 final size:58
Alignment explanation
Indices: 14731487--14731602 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
14731477 CCTAACTAAA
14731487 CCATTAAGACAAGCTATGACGGTGAGGGGAACAATGGATCAACGGATATATGTGGAAG
1 CCATTAAGACAAGCTATGACGGTGAGGGGAACAATGGATCAACGGATATATGTGGAAG
* *
14731545 CCATTAAGACAAGCTATGATGGTGAGGGGAACAATGGATCAATGGATATATGTGGAAG
1 CCATTAAGACAAGCTATGACGGTGAGGGGAACAATGGATCAACGGATATATGTGGAAG
14731603 GATCAAATAT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.21
Consensus pattern (58 bp):
CCATTAAGACAAGCTATGACGGTGAGGGGAACAATGGATCAACGGATATATGTGGAAG
Found at i:14737356 original size:21 final size:21
Alignment explanation
Indices: 14737332--14737371 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14737322 TTTAGCATAC
14737332 TGGTAATAAACATAAGCATGT
1 TGGTAATAAACATAAGCATGT
14737353 TGGTAATAAACATAAGCAT
1 TGGTAATAAACATAAGCAT
14737372 TGTGAGCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.28
Consensus pattern (21 bp):
TGGTAATAAACATAAGCATGT
Found at i:14746204 original size:21 final size:19
Alignment explanation
Indices: 14746178--14746247 Score: 59
Period size: 21 Copynumber: 3.4 Consensus size: 19
14746168 AGAATCAATC
14746178 GATCCCTTCCTTGAGGGGATT
1 GATCCCTT-CTTG-GGGGATT
* *
14746199 GATCCCTTACTTGGGTGATC
1 GATCCCTT-CTTGGGGGATT
* *
14746219 GATCCCCTATGTGGGGGGATT
1 GAT-CCCT-TCTTGGGGGATT
14746240 GATCCCTT
1 GATCCCTT
14746248 TTCTAGAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
19 1 0.03
20 12 0.30
21 26 0.65
22 1 0.03
ACGTcount: A:0.14, C:0.24, G:0.29, T:0.33
Consensus pattern (19 bp):
GATCCCTTCTTGGGGGATT
Found at i:14747828 original size:16 final size:16
Alignment explanation
Indices: 14747794--14747828 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
14747784 ATACAAGCTC
**
14747794 ATACCAATTGTTATGG
1 ATACCAATTGTTAAAG
14747810 ATACCAATTGTTAAAG
1 ATACCAATTGTTAAAG
14747826 ATA
1 ATA
14747829 TGTTATCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.11, G:0.14, T:0.34
Consensus pattern (16 bp):
ATACCAATTGTTAAAG
Found at i:14752194 original size:19 final size:20
Alignment explanation
Indices: 14752170--14752214 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
14752160 AGAACCGATC
14752170 GATCCCTTCCTTGAGG-G-TT
1 GATCCCTTCCTTG-GGTGATT
*
14752189 GATCCCTTGCTTGGGTGATT
1 GATCCCTTCCTTGGGTGATT
14752209 GATCCC
1 GATCCC
14752215 CTATATGGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 2 0.09
19 13 0.57
20 8 0.35
ACGTcount: A:0.11, C:0.27, G:0.27, T:0.36
Consensus pattern (20 bp):
GATCCCTTCCTTGGGTGATT
Found at i:14755184 original size:30 final size:30
Alignment explanation
Indices: 14755150--14755207 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
14755140 GAAATAGAGC
14755150 TGTAGCTATTTCAAAGTGAAACACACAAAG
1 TGTAGCTATTTCAAAGTGAAACACACAAAG
* *
14755180 TGTAGCTATTTCAAATTGGAACACACAA
1 TGTAGCTATTTCAAAGTGAAACACACAA
14755208 GGTGCCAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.41, C:0.17, G:0.16, T:0.26
Consensus pattern (30 bp):
TGTAGCTATTTCAAAGTGAAACACACAAAG
Found at i:14756049 original size:6 final size:6
Alignment explanation
Indices: 14756038--14756076 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
14756028 AGTTATACCG
* * *
14756038 ATCCCT ATCCCT ATCTCT ATCCCT TTCACT ATCCCT ATC
1 ATCCCT ATCCCT ATCCCT ATCCCT ATCCCT ATCCCT ATC
14756077 TTTGTCTCCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.18, C:0.44, G:0.00, T:0.38
Consensus pattern (6 bp):
ATCCCT
Found at i:14756120 original size:18 final size:18
Alignment explanation
Indices: 14756099--14756141 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14756089 ACGTCCCTAT
* *
14756099 TCTCTATCATAATCTCTA
1 TCTCTATAATAATCTCGA
*
14756117 TCTCTTTAATAATCTCGA
1 TCTCTATAATAATCTCGA
14756135 TCTCTAT
1 TCTCTAT
14756142 GAAAAGGGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.02, T:0.47
Consensus pattern (18 bp):
TCTCTATAATAATCTCGA
Found at i:14759627 original size:11 final size:11
Alignment explanation
Indices: 14759611--14759636 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14759601 ATTTTATATT
14759611 AAATAAAATCA
1 AAATAAAATCA
14759622 AAATAAAATCA
1 AAATAAAATCA
14759633 AAAT
1 AAAT
14759637 TTTCCATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.73, C:0.08, G:0.00, T:0.19
Consensus pattern (11 bp):
AAATAAAATCA
Found at i:14762348 original size:16 final size:16
Alignment explanation
Indices: 14762329--14762359 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14762319 TTGTTGACAT
*
14762329 TGTTGAGTGTACTATA
1 TGTTAAGTGTACTATA
14762345 TGTTAAGTGTACTAT
1 TGTTAAGTGTACTAT
14762360 TTATTTTCTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.06, G:0.23, T:0.45
Consensus pattern (16 bp):
TGTTAAGTGTACTATA
Found at i:14762413 original size:21 final size:20
Alignment explanation
Indices: 14762381--14762429 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 20
14762371 ATTTGCTTTA
14762381 TTTTTT-TTATTTAATATAT
1 TTTTTTATTATTTAATATAT
* *
14762400 TTTTTCTATTATTTGATGTAT
1 TTTTT-TATTATTTAATATAT
14762421 TTTTTTATT
1 TTTTTTATT
14762430 TGATATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 5 0.19
20 5 0.19
21 16 0.62
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTTTATTATTTAATATAT
Found at i:14762424 original size:38 final size:38
Alignment explanation
Indices: 14762363--14762435 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
14762353 GTACTATTTA
* *
14762363 TTTTCTATATTTGCTTTATTTTTTTTATTTAATATATT
1 TTTTCTATATTTGATGTATTTTTTTTATTTAATATATT
*
14762401 TTTTCTATTATTTGATGTA-TTTTTTTATTTGATAT
1 TTTTCTA-TATTTGATGTATTTTTTTTATTTAATAT
14762436 TGAATCTTGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
38 22 0.71
39 9 0.29
ACGTcount: A:0.21, C:0.04, G:0.05, T:0.70
Consensus pattern (38 bp):
TTTTCTATATTTGATGTATTTTTTTTATTTAATATATT
Found at i:14765533 original size:136 final size:136
Alignment explanation
Indices: 14765289--14765554 Score: 505
Period size: 136 Copynumber: 2.0 Consensus size: 136
14765279 ATGAAATACC
*
14765289 TTTCAAAGATTAAGTGTTTACCTAATTTAAGTACAAAGAATGATAAATGAAGAACAAATATAACT
1 TTTCAAAGATTAAGTGTATACCTAATTTAAGTACAAAGAATGATAAATGAAGAACAAATATAACT
14765354 TGGATACATAAATGAGAAAAATTAAAAGTGTGTTGAATTTTCAATTTATAAAAGAAATGAGTTTG
66 TGGATACATAAATGAGAAAAATTAAAAGTGTGTTGAATTTTCAATTTATAAAAGAAATGAGTTTG
14765419 CCTAAT
131 CCTAAT
*
14765425 TTTCAAAGATTAAGTGTATGCCTAATTTAAGTACAAAGAATGATAAATGAAGAACAAATATAACT
1 TTTCAAAGATTAAGTGTATACCTAATTTAAGTACAAAGAATGATAAATGAAGAACAAATATAACT
*
14765490 TGGATACATAAATGAGAAAAATTAAAAGTGTGTTGAATTTTCAATTTATAGAAGAAATGAGTTTG
66 TGGATACATAAATGAGAAAAATTAAAAGTGTGTTGAATTTTCAATTTATAAAAGAAATGAGTTTG
14765555 TAGCCATTGG
Statistics
Matches: 127, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
136 127 1.00
ACGTcount: A:0.45, C:0.07, G:0.16, T:0.32
Consensus pattern (136 bp):
TTTCAAAGATTAAGTGTATACCTAATTTAAGTACAAAGAATGATAAATGAAGAACAAATATAACT
TGGATACATAAATGAGAAAAATTAAAAGTGTGTTGAATTTTCAATTTATAAAAGAAATGAGTTTG
CCTAAT
Found at i:14766719 original size:90 final size:90
Alignment explanation
Indices: 14766563--14766729 Score: 255
Period size: 90 Copynumber: 1.9 Consensus size: 90
14766553 TCAAAATAAG
*
14766563 GATCAATTTAAGACTAACAATCTCTCCCTTTTTGATATGACAAAACTTAAAGATAAATTTCCTTG
1 GATCAATTTAAGACTAACAATCTCTCCCTTTTTGATATGACAAAACTTAAAAATAAATTTCCTTG
*
14766628 ATAAAAAGCTTTCTTTAACTTTTAT
66 ATAAAAAACTTTCTTTAACTTTTAT
* * * **
14766653 GATCAATTTAAGACTAACAATCTCAT-CTTTTTTTATATGATAAAACTTAAAAATAAATTTGTTT
1 GATCAATTTAAGACTAACAATCTC-TCCCTTTTTGATATGACAAAACTTAAAAATAAATTTCCTT
14766717 GATAAAAAACTTT
65 GATAAAAAACTTT
14766730 GATAAAAAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
90 68 0.99
91 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.40
Consensus pattern (90 bp):
GATCAATTTAAGACTAACAATCTCTCCCTTTTTGATATGACAAAACTTAAAAATAAATTTCCTTG
ATAAAAAACTTTCTTTAACTTTTAT
Found at i:14766730 original size:13 final size:13
Alignment explanation
Indices: 14766714--14766755 Score: 84
Period size: 13 Copynumber: 3.2 Consensus size: 13
14766704 AATAAATTTG
14766714 TTTGATAAAAAAC
1 TTTGATAAAAAAC
14766727 TTTGATAAAAAAC
1 TTTGATAAAAAAC
14766740 TTTGATAAAAAAC
1 TTTGATAAAAAAC
14766753 TTT
1 TTT
14766756 CTTTGAAACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.50, C:0.07, G:0.07, T:0.36
Consensus pattern (13 bp):
TTTGATAAAAAAC
Found at i:14768414 original size:21 final size:21
Alignment explanation
Indices: 14768388--14768436 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
14768378 GTTGTTAATA
*
14768388 TATTTTTATTA-TTTTTATTT
1 TATTTTTATGACTTTTTATTT
*
14768408 CTATTTTTGTGACTTTTTATTT
1 -TATTTTTATGACTTTTTATTT
14768430 TATTTTT
1 TATTTTT
14768437 TGTGTTAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (21 bp):
TATTTTTATGACTTTTTATTT
Found at i:14768969 original size:24 final size:27
Alignment explanation
Indices: 14768932--14768994 Score: 69
Period size: 25 Copynumber: 2.4 Consensus size: 27
14768922 AATTTTCAAT
*
14768932 AAAACATAATAAAAACCAAATA-ATAA
1 AAAACATAATAAAAACAAAATAGATAA
*
14768958 AAAAC-TAA-AAAAATAAAATAGATAA
1 AAAACATAATAAAAACAAAATAGATAA
* *
14768983 AAGACTTAATAA
1 AAAACATAATAA
14768995 TAAATAGTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 10 0.32
25 11 0.35
26 8 0.26
27 2 0.06
ACGTcount: A:0.71, C:0.08, G:0.03, T:0.17
Consensus pattern (27 bp):
AAAACATAATAAAAACAAAATAGATAA
Found at i:14777456 original size:8 final size:9
Alignment explanation
Indices: 14777443--14777479 Score: 51
Period size: 8 Copynumber: 4.2 Consensus size: 9
14777433 TAGAAAAATT
14777443 ATAAAT-AA
1 ATAAATCAA
14777451 ATAAAT-AA
1 ATAAATCAA
14777459 ATAAATCAA
1 ATAAATCAA
14777468 ATTAAATCAA
1 A-TAAATCAA
14777478 AT
1 AT
14777480 TAAAATTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 14 0.52
9 4 0.15
10 9 0.33
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.27
Consensus pattern (9 bp):
ATAAATCAA
Found at i:14778031 original size:69 final size:69
Alignment explanation
Indices: 14777907--14778041 Score: 207
Period size: 69 Copynumber: 2.0 Consensus size: 69
14777897 CAAATTTCCA
**
14777907 AAGATTCCAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTTGCAAGAAAGAAAGAT
1 AAGATTCCAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTCACAAGAAAGAAAGAT
14777972 TTGC
66 TTGC
* * * * *
14777976 AAGATTCTAAGTTTTGCAAAGGTTCTAGATTCACTAGGACTTTCAGATTCACAAGAATGGAAGAT
1 AAGATTCCAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTCACAAGAAAGAAAGAT
14778041 T
66 T
14778042 CACAAAATTT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (69 bp):
AAGATTCCAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTCACAAGAAAGAAAGAT
TTGC
Found at i:14778071 original size:69 final size:69
Alignment explanation
Indices: 14777905--14778058 Score: 193
Period size: 69 Copynumber: 2.2 Consensus size: 69
14777895 TCCAAATTTC
* **
14777905 CAAAGATTCCAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTTGCAAGAAAGAAAG
1 CAAA-ATTCTAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTCACAAGAAAGAAAG
**
14777970 ATTTG
65 ATTCA
* * * * *
14777975 CAAGATTCTAAGTTTTGCAAAGGTTCTAGATTCACTAGGACTTTCAGATTCACAAGAATGGAAGA
1 CAAAATTCTAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTCACAAGAAAGAAAGA
14778040 TTCA
66 TTCA
14778044 CAAAATT-TCAAGTTT
1 CAAAATTCT-AAGTTT
14778059 CATATAGGTT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
68 1 0.01
69 68 0.94
70 3 0.04
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (69 bp):
CAAAATTCTAAGTTTTGCAAAGGTTCTAGATTCACAAGGACTTTCAAATTCACAAGAAAGAAAGA
TTCA
Done.