Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 75 of 133
Found at i:14778101 original size:86 final size:85
Alignment explanation
Indices: 14777988--14778167 Score: 261
Period size: 86 Copynumber: 2.1 Consensus size: 85
14777978 GATTCTAAGT
* * *
14777988 TTTGCAAAGGTTCTAGATTCACTAGGACTTTCAGATTCACAAGAATGGAAGATTCACAAAATTTC
1 TTTGCAAAGATTCTAAATTCACAAGGACTTTCAGATTCACAAGAATGGAAGATT-ACAAAATTTC
* *
14778053 AAGTTTCATATAGGTTCTATA
65 AAGTTTCATAGAGGTTCTAGA
* * *
14778074 TTTGTAAAGATTCTAAATTCACAAGGACTTTTAGATTCACAAGAATGGAAGATTAGAAAATTTCA
1 TTTGCAAAGATTCTAAATTCACAAGGACTTTCAGATTCACAAGAATGGAAGATTACAAAATTTCA
**
14778139 AGTTTTGTAGAGGTTCTAGA
66 AGTTTCATAGAGGTTCTAGA
14778159 TTTGCAAAG
1 TTTGCAAAG
14778168 GTTTCAGGTT
Statistics
Matches: 83, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
85 34 0.41
86 49 0.59
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (85 bp):
TTTGCAAAGATTCTAAATTCACAAGGACTTTCAGATTCACAAGAATGGAAGATTACAAAATTTCA
AGTTTCATAGAGGTTCTAGA
Found at i:14778195 original size:85 final size:86
Alignment explanation
Indices: 14777988--14778204 Score: 204
Period size: 85 Copynumber: 2.5 Consensus size: 86
14777978 GATTCTAAGT
* * * * ***
14777988 TTTGCAAAGGTTCTAGATTCACTAGGACTTTCAGATTCACAAGAATGGAAGATTCACAAAATTTC
1 TTTGCAAAGATTCTAAATTCACAAGAACTCAAAGATTCACAAGAATGGAAGATTCACAAAATTTC
* *
14778053 AAGTTTCATATAGGTTCTATA
66 AAGTTTCATAGAGGTTCTAGA
* * *** *
14778074 TTTGTAAAGATTCTAAATTCACAAGGACTTTTAGATTCACAAGAATGGAAGATT-AGAAAATTTC
1 TTTGCAAAGATTCTAAATTCACAAGAACTCAAAGATTCACAAGAATGGAAGATTCACAAAATTTC
**
14778138 AAGTTTTGTAGAGGTTCTAGA
66 AAGTTTCATAGAGGTTCTAGA
* ** ** *
14778159 TTTGCAAAGGTT-TCAGGTTCGTAAGAACTCAAAGATTCATAAGAAT
1 TTTGCAAAGATTCT-AAATTCACAAGAACTCAAAGATTCACAAGAAT
14778205 TTCAAATATT
Statistics
Matches: 109, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
84 1 0.01
85 59 0.54
86 49 0.45
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.33
Consensus pattern (86 bp):
TTTGCAAAGATTCTAAATTCACAAGAACTCAAAGATTCACAAGAATGGAAGATTCACAAAATTTC
AAGTTTCATAGAGGTTCTAGA
Found at i:14778203 original size:18 final size:19
Alignment explanation
Indices: 14778180--14778221 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
14778170 TTCAGGTTCG
14778180 TAAGAA-CTCAAAGATTCA
1 TAAGAATCTCAAAGATTCA
* *
14778198 TAAGAATTTCAAATATTCA
1 TAAGAATCTCAAAGATTCA
14778217 TAAGA
1 TAAGA
14778222 GCTTTTATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.29
Consensus pattern (19 bp):
TAAGAATCTCAAAGATTCA
Found at i:14778254 original size:17 final size:17
Alignment explanation
Indices: 14778234--14778278 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
14778224 TTTTATTTCA
14778234 TAAGAAATTCAGATTCG
1 TAAGAAATTCAGATTCG
* *
14778251 TAAGAAATTTAGGTTCG
1 TAAGAAATTCAGATTCG
* *
14778268 CAAAAAATTCA
1 TAAGAAATTCA
14778279 AAGATTTACA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (17 bp):
TAAGAAATTCAGATTCG
Found at i:14778292 original size:36 final size:36
Alignment explanation
Indices: 14778252--14778356 Score: 111
Period size: 36 Copynumber: 2.9 Consensus size: 36
14778242 TCAGATTCGT
* * *
14778252 AAGAAATTTAGGTTCGCAAAAAATTCAAAGATTTAC
1 AAGAAATTCAGATTCGCAAAAAATTCAAAGATTAAC
* * * *
14778288 AAGAAATTCATATTTGCAAGAGATTCAAAGATTAAC
1 AAGAAATTCAGATTCGCAAAAAATTCAAAGATTAAC
* * * *
14778324 AAGAAATTCATATTCGTAAGAGATTCAAAGATT
1 AAGAAATTCAGATTCGCAAAAAATTCAAAGATT
14778357 CACTTCAATG
Statistics
Matches: 60, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.47, C:0.10, G:0.14, T:0.29
Consensus pattern (36 bp):
AAGAAATTCAGATTCGCAAAAAATTCAAAGATTAAC
Found at i:14778296 original size:19 final size:19
Alignment explanation
Indices: 14778272--14778333 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 19
14778262 GGTTCGCAAA
14778272 AAATTCAAAGATTTACAAG
1 AAATTCAAAGATTTACAAG
* *
14778291 AAATTC--ATATTTGCAAG
1 AAATTCAAAGATTTACAAG
* *
14778308 AGATTCAAAGATTAACAAG
1 AAATTCAAAGATTTACAAG
14778327 AAATTCA
1 AAATTCA
14778334 TATTCGTAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
17 14 0.41
19 20 0.59
ACGTcount: A:0.50, C:0.11, G:0.11, T:0.27
Consensus pattern (19 bp):
AAATTCAAAGATTTACAAG
Found at i:14778307 original size:17 final size:17
Alignment explanation
Indices: 14778282--14778337 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
14778272 AAATTCAAAG
14778282 ATTTACAAGAAATTCAT
1 ATTTACAAGAAATTCAT
* * *
14778299 ATTTGCAAGAGATTCAAAG
1 ATTTACAAGAAATTC--AT
*
14778318 ATTAACAAGAAATTCAT
1 ATTTACAAGAAATTCAT
14778335 ATT
1 ATT
14778338 CGTAAGAGAT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
17 17 0.57
19 13 0.43
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (17 bp):
ATTTACAAGAAATTCAT
Found at i:14778606 original size:45 final size:43
Alignment explanation
Indices: 14778534--14778658 Score: 133
Period size: 45 Copynumber: 2.9 Consensus size: 43
14778524 AGAGTCTCAC
* * *
14778534 ATCCAAAAGTTAAAGATTTTTATTGAAAAATTTTGGGATTCAT
1 ATCCAAAAGTTAAAGATCTTGATTGAAAAACTTTGGGATTCAT
* *
14778577 ATCCAAAATTTCAAAGAGTCTTGATTGAAAAACTTTGGGATTCAC
1 ATCCAAAAGTT-AAAGA-TCTTGATTGAAAAACTTTGGGATTCAT
*** * * *
14778622 ATATGAAAGTTAAAGATTTTCATTGAAAAATTTTGGG
1 ATCCAAAAGTTAAAGATCTTGATTGAAAAACTTTGGG
14778659 GTTTCGCATC
Statistics
Matches: 68, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
43 28 0.41
44 10 0.15
45 30 0.44
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (43 bp):
ATCCAAAAGTTAAAGATCTTGATTGAAAAACTTTGGGATTCAT
Found at i:14779676 original size:9 final size:9
Alignment explanation
Indices: 14779664--14779730 Score: 55
Period size: 9 Copynumber: 6.9 Consensus size: 9
14779654 CCTTTTTCTC
14779664 TCTTTTTTT
1 TCTTTTTTT
14779673 TCTTTTTTT
1 TCTTTTTTT
14779682 TCTTTTGTTTT
1 TC-TTT-TTTT
14779693 TGCTTTTTGTT
1 T-CTTTTT-TT
14779704 T-TTTGCTTTT
1 TCTTT--TTTT
*
14779714 TATTTTTTT
1 TCTTTTTTT
*
14779723 TATTTTTT
1 TCTTTTTT
14779731 CATTTTTTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
9 26 0.51
10 8 0.16
11 16 0.31
12 1 0.02
ACGTcount: A:0.03, C:0.07, G:0.06, T:0.84
Consensus pattern (9 bp):
TCTTTTTTT
Found at i:14779679 original size:20 final size:21
Alignment explanation
Indices: 14779656--14779700 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
14779646 TTTTTCCTCC
14779656 TTTTTCTCTCTTT-TTTTT-CT
1 TTTTTCTCT-TTTGTTTTTGCT
*
14779676 TTTTTTTCTTTTGTTTTTGCT
1 TTTTTCTCTTTTGTTTTTGCT
14779697 TTTT
1 TTTT
14779701 GTTTTTTGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 13 0.59
21 6 0.27
ACGTcount: A:0.00, C:0.13, G:0.04, T:0.82
Consensus pattern (21 bp):
TTTTTCTCTTTTGTTTTTGCT
Found at i:14779687 original size:14 final size:13
Alignment explanation
Indices: 14779656--14779740 Score: 53
Period size: 13 Copynumber: 6.1 Consensus size: 13
14779646 TTTTTCCTCC
* *
14779656 TTTTTCTCTCTTT
1 TTTTTCTTTTTTT
14779669 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
* **
14779682 TCTTTTGTTTTTGC
1 T-TTTTCTTTTTTT
*
14779696 TTTTTGTTTTTTGCT
1 TTTTTCTTTTTT--T
*
14779711 TTTTATTTTTTTTAT
1 TTTT-TCTTTTTT-T
14779726 TTTTTCATTTTTTT
1 TTTTTC-TTTTTTT
14779740 T
1 T
14779741 CGCACACCCT
Statistics
Matches: 57, Mismatches: 10, Indels: 9
0.75 0.13 0.12
Matches are distributed among these distances:
13 22 0.39
14 13 0.23
15 15 0.26
16 7 0.12
ACGTcount: A:0.04, C:0.09, G:0.05, T:0.82
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:14780043 original size:17 final size:18
Alignment explanation
Indices: 14780012--14780069 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 18
14780002 GTCCCATCAA
14780012 TTTCTCTTTCATTTT-CTTT
1 TTTCT-TTTC-TTTTCCTTT
14780031 TTTCTTTTCTTTTCCTTTT
1 TTTCTTTTCTTTTCC-TTT
*
14780050 TTTTTTCTTCTTTTCCTTT
1 TTTCTT-TTCTTTTCCTTT
14780069 T
1 T
14780070 CCTTTTTTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
17 4 0.11
18 5 0.14
19 17 0.49
20 9 0.26
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.78
Consensus pattern (18 bp):
TTTCTTTTCTTTTCCTTT
Found at i:14780053 original size:20 final size:20
Alignment explanation
Indices: 14780013--14780069 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 20
14780003 TCCCATCAAT
*
14780013 TTCTCTTTCATTTTCTTTTTTC
1 TTCT-TTTCCTTTT-TTTTTTC
14780035 TTTTCTTTTCCTTTTTTTTTTC
1 --TTCTTTTCCTTTTTTTTTTC
14780057 TTCTTTTCCTTTT
1 TTCTTTTCCTTTT
14780070 CCTTTTTTCC
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 13 0.41
22 7 0.22
23 8 0.25
24 4 0.12
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TTCTTTTCCTTTTTTTTTTC
Found at i:14780060 original size:25 final size:25
Alignment explanation
Indices: 14780023--14780077 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 25
14780013 TTCTCTTTCA
*
14780023 TTTTCTTTTTTCTTTT-CTTTTCCT
1 TTTTTTTTTTTCTTTTCCTTTTCCT
14780047 TTTTTTTTTCTTCTTTTCCTTTTCCT
1 TTTTTTTTT-TTCTTTTCCTTTTCCT
14780073 TTTTT
1 TTTTT
14780078 CCTTTCATCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 8 0.29
25 7 0.25
26 13 0.46
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (25 bp):
TTTTTTTTTTTCTTTTCCTTTTCCT
Found at i:14780082 original size:20 final size:18
Alignment explanation
Indices: 14780018--14780082 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 18
14780008 TCAATTTCTC
*
14780018 TTTCATTTT-CTTTTTTCT
1 TTTCCTTTTCCTTTTTT-T
14780036 TTT-CTTTTCCTTTTTTT
1 TTTCCTTTTCCTTTTTTT
14780053 TTTCTTCTTTTCCTTTTCCTTT
1 TTTC--CTTTTCCTTTT--TTT
14780075 TTTCCTTT
1 TTTCCTTT
14780083 CATCATTTTT
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 8 0.20
18 10 0.25
20 15 0.38
22 7 0.17
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTCCTTTTCCTTTTTTT
Found at i:14784012 original size:18 final size:21
Alignment explanation
Indices: 14783989--14784037 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
14783979 CAAACAATAC
14783989 CATGCAAAT-ATAAT-AT-AT
1 CATGCAAATAATAATAATAAT
14784007 CATGCAATAATAATAATAATAAT
1 CATGC-A-AATAATAATAATAAT
14784030 CATGCAAA
1 CATGCAAA
14784038 AAACATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
18 5 0.19
19 1 0.04
20 3 0.12
21 7 0.27
22 3 0.12
23 7 0.27
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (21 bp):
CATGCAAATAATAATAATAAT
Found at i:14784045 original size:23 final size:24
Alignment explanation
Indices: 14783994--14784045 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
14783984 AATACCATGC
14783994 AAAT-ATAATATATCATGCAATAA
1 AAATAATAATATATCATGCAATAA
*
14784017 TAATAATAATA-ATCATGCAA-AA
1 AAATAATAATATATCATGCAATAA
14784039 AACATAA
1 AA-ATAA
14784046 AAATTAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
22 3 0.12
23 16 0.64
24 6 0.24
ACGTcount: A:0.60, C:0.10, G:0.04, T:0.27
Consensus pattern (24 bp):
AAATAATAATATATCATGCAATAA
Found at i:14791928 original size:17 final size:18
Alignment explanation
Indices: 14791908--14791942 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14791898 AAACTAAAAT
14791908 TAAT-ACCAATCTTTAAC
1 TAATAACCAATCTTTAAC
*
14791925 TAATAACCGATCTTTAAC
1 TAATAACCAATCTTTAAC
14791943 CCAAGAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.40, C:0.23, G:0.03, T:0.34
Consensus pattern (18 bp):
TAATAACCAATCTTTAAC
Found at i:14795440 original size:12 final size:13
Alignment explanation
Indices: 14795423--14795458 Score: 51
Period size: 11 Copynumber: 3.0 Consensus size: 13
14795413 TATCTACTCA
14795423 CTTTTC-TTAGTT
1 CTTTTCTTTAGTT
14795435 CTTTTCTTTAG-T
1 CTTTTCTTTAGTT
14795447 -TTTTCTTTAGTT
1 CTTTTCTTTAGTT
14795459 TTAGTTATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
11 10 0.45
12 8 0.36
13 4 0.18
ACGTcount: A:0.08, C:0.14, G:0.08, T:0.69
Consensus pattern (13 bp):
CTTTTCTTTAGTT
Found at i:14803849 original size:19 final size:19
Alignment explanation
Indices: 14803825--14803865 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
14803815 AAAGAATACC
*
14803825 AAATCCTAATCCACA-TAGG
1 AAATCCAAATCCA-AGTAGG
14803844 AAATCCAAATCCAAGTAGG
1 AAATCCAAATCCAAGTAGG
14803863 AAA
1 AAA
14803866 AGTAATTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.49, C:0.22, G:0.12, T:0.17
Consensus pattern (19 bp):
AAATCCAAATCCAAGTAGG
Found at i:14814178 original size:13 final size:13
Alignment explanation
Indices: 14814139--14814184 Score: 56
Period size: 13 Copynumber: 3.3 Consensus size: 13
14814129 ATTTTATGGG
14814139 TCATTCATGTCAT
1 TCATTCATGTCAT
*
14814152 CTTATTACCATGTCAT
1 -TCATT--CATGTCAT
14814168 TCATTCATGTCAT
1 TCATTCATGTCAT
14814181 TCAT
1 TCAT
14814185 GTCCCATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 12 0.43
14 4 0.14
15 4 0.14
16 8 0.29
ACGTcount: A:0.24, C:0.24, G:0.07, T:0.46
Consensus pattern (13 bp):
TCATTCATGTCAT
Found at i:14815949 original size:27 final size:23
Alignment explanation
Indices: 14815896--14815951 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
14815886 AGACCAAATT
**
14815896 AAAAAAGAAAGGAAGAAAAAACT
1 AAAAAAGAAAGGAAGAAAAAAAG
14815919 AAAAAAGAAAGATGAAGAGAAGAAAAG
1 AAAAAAGAAAG--GAAGA-AA-AAAAG
14815946 AAAAAA
1 AAAAAA
14815952 AATGAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 11 0.41
25 5 0.19
26 2 0.07
27 9 0.33
ACGTcount: A:0.75, C:0.02, G:0.20, T:0.04
Consensus pattern (23 bp):
AAAAAAGAAAGGAAGAAAAAAAG
Found at i:14816213 original size:8 final size:8
Alignment explanation
Indices: 14816202--14816227 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
14816192 AAAAGATGAA
14816202 AAAAAAAG
1 AAAAAAAG
14816210 AAAAAAAG
1 AAAAAAAG
14816218 AAAAAAAG
1 AAAAAAAG
14816226 AA
1 AA
14816228 GCGAATAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:14817305 original size:30 final size:29
Alignment explanation
Indices: 14817248--14817305 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
14817238 TATATATCAA
* *
14817248 AATTTTATTAAATCAATGTATTAAATAAT
1 AATTTTATTAAATCAATATAATAAATAAT
14817277 AATTTTATTAATAT-AATATACATAAATAA
1 AATTTTATTAA-ATCAATATA-ATAAATAA
14817306 AATAAATAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 16 0.64
30 9 0.36
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (29 bp):
AATTTTATTAAATCAATATAATAAATAAT
Found at i:14822038 original size:13 final size:13
Alignment explanation
Indices: 14822020--14822044 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14822010 TTTTATATCT
14822020 AAAATTAATAATC
1 AAAATTAATAATC
14822033 AAAATTAATAAT
1 AAAATTAATAAT
14822045 TAAATCGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTAATAATC
Found at i:14822901 original size:36 final size:36
Alignment explanation
Indices: 14822856--14822947 Score: 121
Period size: 36 Copynumber: 2.6 Consensus size: 36
14822846 ATTATGATAT
* * * * *
14822856 GAGGTATTATAGTAATTTTGGTTAATTATGGTTGGT
1 GAGGTATTATAGTAATTTTGGTAAAATATGATAGGA
*
14822892 GGGGTATTATAGTAATTTTGGTAAAATATGATAGGA
1 GAGGTATTATAGTAATTTTGGTAAAATATGATAGGA
*
14822928 GAGGCATTATAGTAATTTTG
1 GAGGTATTATAGTAATTTTG
14822948 ACAAATTATG
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 48 1.00
ACGTcount: A:0.30, C:0.01, G:0.27, T:0.41
Consensus pattern (36 bp):
GAGGTATTATAGTAATTTTGGTAAAATATGATAGGA
Found at i:14822971 original size:36 final size:36
Alignment explanation
Indices: 14822861--14822971 Score: 116
Period size: 36 Copynumber: 3.1 Consensus size: 36
14822851 GATATGAGGT
* * * * *
14822861 ATTATAGTAATTTTGGTTAATTATGGTTGGTGGGGT
1 ATTATAGTAATTTTGGTAAATTATGGTAGGAGGAGC
* *
14822897 ATTATAGTAATTTTGGTAAAATATGATAGGA-GAGGC
1 ATTATAGTAATTTTGGTAAATTATGGTAGGAGGA-GC
** *
14822933 ATTATAGTAATTTTGACAAATTATGGTAGAAGGAGC
1 ATTATAGTAATTTTGGTAAATTATGGTAGGAGGAGC
14822969 ATT
1 ATT
14822972 TTCATAATTA
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
35 1 0.02
36 58 0.95
37 2 0.03
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.39
Consensus pattern (36 bp):
ATTATAGTAATTTTGGTAAATTATGGTAGGAGGAGC
Found at i:14824016 original size:15 final size:15
Alignment explanation
Indices: 14823988--14824030 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14823978 AATCGATTTG
14823988 AATTTTAA-TTAAAT
1 AATTTTAAGTTAAAT
** *
14824002 TGTTTTAGGTTAAAT
1 AATTTTAAGTTAAAT
14824017 AATTTTAAGTTAAA
1 AATTTTAAGTTAAA
14824031 AAAATAAAAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (15 bp):
AATTTTAAGTTAAAT
Found at i:14828957 original size:11 final size:11
Alignment explanation
Indices: 14828936--14829024 Score: 107
Period size: 11 Copynumber: 8.4 Consensus size: 11
14828926 AGCCGGGATC
14828936 ACTAA-CTAAT
1 ACTAATCTAAT
14828946 ACTAATCTAAT
1 ACTAATCTAAT
14828957 ACTAATCTAAT
1 ACTAATCTAAT
14828968 ACTAATCTAAT
1 ACTAATCTAAT
*
14828979 ACTAATATAAT
1 ACTAATCTAAT
14828990 A-TAATACTAAT
1 ACTAAT-CTAAT
14829001 -CTAATACT-AT
1 ACTAAT-CTAAT
*
14829011 A-TAGTCTAAT
1 ACTAATCTAAT
14829021 ACTA
1 ACTA
14829025 TATAGAACCA
Statistics
Matches: 70, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
9 2 0.03
10 17 0.24
11 51 0.73
ACGTcount: A:0.47, C:0.16, G:0.01, T:0.36
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:14828966 original size:5 final size:5
Alignment explanation
Indices: 14828937--14829005 Score: 68
Period size: 5 Copynumber: 13.0 Consensus size: 5
14828927 GCCGGGATCA
14828937 CTAA- CTAAT ACTAAT CTAAT ACTAAT CTAAT ACTAAT CTAAT ACTAAT
1 CTAAT CTAAT -CTAAT CTAAT -CTAAT CTAAT -CTAAT CTAAT -CTAAT
* *
14828985 ATAAT ATAAT ACTAAT CTAAT
1 CTAAT CTAAT -CTAAT CTAAT
14829006 ACTATATAGT
Statistics
Matches: 57, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
4 4 0.07
5 29 0.51
6 24 0.42
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (5 bp):
CTAAT
Found at i:14828989 original size:27 final size:27
Alignment explanation
Indices: 14828940--14829024 Score: 120
Period size: 27 Copynumber: 3.1 Consensus size: 27
14828930 GGGATCACTA
14828940 ACTAATACTAAT-CTAATACTAATCTAAT
1 ACTAAT-CTAATACTAATA-TAATCTAAT
*
14828968 ACTAATCTAATACTAATATAATATAAT
1 ACTAATCTAATACTAATATAATCTAAT
*
14828995 ACTAATCTAATACT-ATATAGTCTAAT
1 ACTAATCTAATACTAATATAATCTAAT
14829021 ACTA
1 ACTA
14829025 TATAGAACCA
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
26 14 0.26
27 27 0.51
28 12 0.23
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.36
Consensus pattern (27 bp):
ACTAATCTAATACTAATATAATCTAAT
Found at i:14829006 original size:16 final size:16
Alignment explanation
Indices: 14828942--14829006 Score: 87
Period size: 16 Copynumber: 4.0 Consensus size: 16
14828932 GATCACTAAC
14828942 TAATACTAATCTAATA
1 TAATACTAATCTAATA
*
14828958 CTAAT-CTAATACTAATC
1 -TAATACTAAT-CTAATA
*
14828975 TAATACTAATATAATA
1 TAATACTAATCTAATA
14828991 TAATACTAATCTAATA
1 TAATACTAATCTAATA
14829007 CTATATAGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
16 28 0.67
17 14 0.33
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATACTAATCTAATA
Found at i:14829020 original size:15 final size:15
Alignment explanation
Indices: 14829000--14829029 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14828990 ATAATACTAA
14829000 TCTAATACTATATAG
1 TCTAATACTATATAG
14829015 TCTAATACTATATAG
1 TCTAATACTATATAG
14829030 AACCAGCTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (15 bp):
TCTAATACTATATAG
Found at i:14829106 original size:22 final size:24
Alignment explanation
Indices: 14829061--14829111 Score: 70
Period size: 22 Copynumber: 2.2 Consensus size: 24
14829051 TTTTTTTTTG
*
14829061 TATTTTTTTCCAATTTTATGTATT
1 TATTTCTTTCCAATTTTATGTATT
*
14829085 TATTTCTTT-CAA-TTTATTTATT
1 TATTTCTTTCCAATTTTATGTATT
14829107 TATTT
1 TATTT
14829112 TTATTTTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 14 0.56
23 3 0.12
24 8 0.32
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.69
Consensus pattern (24 bp):
TATTTCTTTCCAATTTTATGTATT
Found at i:14829117 original size:18 final size:18
Alignment explanation
Indices: 14829074--14829117 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
14829064 TTTTTTCCAA
* *
14829074 TTTTATGTATTTATTTCT
1 TTTTATTTATTTATTTAT
**
14829092 TTCAATTTATTTATTTAT
1 TTTTATTTATTTATTTAT
14829110 TTTTATTT
1 TTTTATTT
14829118 TTGAAATAAA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTATTTATTTATTTAT
Found at i:14833538 original size:18 final size:18
Alignment explanation
Indices: 14833507--14833560 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 18
14833497 ATGGATAAAG
* *
14833507 GAAAAAAGTG-AAAAGAT
1 GAAAGAAGTGAAAAAAAT
14833524 GAAA-AA-TGAAAAAAAT
1 GAAAGAAGTGAAAAAAAT
14833540 GAAAGAAGTG-AAAAAAT
1 GAAAGAAGTGAAAAAAAT
14833557 GAAA
1 GAAA
14833561 AAAAAAAATG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 2 0.06
16 12 0.36
17 17 0.52
18 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.20, T:0.11
Consensus pattern (18 bp):
GAAAGAAGTGAAAAAAAT
Found at i:14833559 original size:33 final size:30
Alignment explanation
Indices: 14833507--14833574 Score: 91
Period size: 33 Copynumber: 2.2 Consensus size: 30
14833497 ATGGATAAAG
*
14833507 GAAAAAAGTGAAAAGATGAAAAATGAAAAAAAT
1 GAAAAAAGTGAAAAAATG-AAAA--AAAAAAAT
*
14833540 GAAAGAAGTGAAAAAATGAAAAAAAAAAAT
1 GAAAAAAGTGAAAAAATGAAAAAAAAAAAT
14833570 GAAAA
1 GAAAA
14833575 TTTAAACGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 12 0.38
32 4 0.12
33 16 0.50
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (30 bp):
GAAAAAAGTGAAAAAATGAAAAAAAAAAAT
Found at i:14833563 original size:8 final size:8
Alignment explanation
Indices: 14833507--14833574 Score: 63
Period size: 9 Copynumber: 8.6 Consensus size: 8
14833497 ATGGATAAAG
14833507 GAAAAAAGT
1 GAAAAAA-T
*
14833516 GAAAAGAT
1 GAAAAAAT
14833524 G-AAAAAT
1 GAAAAAAT
14833531 GAAAAAAAT
1 G-AAAAAAT
*
14833540 GAAAGAAGT
1 GAAA-AAAT
14833549 GAAAAAAT
1 GAAAAAAT
14833557 G-AAAAA-
1 GAAAAAAT
14833563 -AAAAAAT
1 GAAAAAAT
14833570 GAAAA
1 GAAAA
14833575 TTTAAACGAC
Statistics
Matches: 49, Mismatches: 4, Indels: 13
0.74 0.06 0.20
Matches are distributed among these distances:
6 5 0.10
7 11 0.22
8 13 0.27
9 20 0.41
ACGTcount: A:0.72, C:0.00, G:0.18, T:0.10
Consensus pattern (8 bp):
GAAAAAAT
Found at i:14833568 original size:13 final size:13
Alignment explanation
Indices: 14833550--14833574 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14833540 GAAAGAAGTG
14833550 AAAAAATGAAAAA
1 AAAAAATGAAAAA
14833563 AAAAAATGAAAA
1 AAAAAATGAAAA
14833575 TTTAAACGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (13 bp):
AAAAAATGAAAAA
Found at i:14834140 original size:75 final size:75
Alignment explanation
Indices: 14834017--14834172 Score: 294
Period size: 75 Copynumber: 2.1 Consensus size: 75
14834007 ATGTTTATAA
*
14834017 AAGATTCCTACATTCTTTTGAAAGAAATTTAAGATGATAAGGGCAAAATGAAATGAAAAATGGAA
1 AAGATACCTACATTCTTTTGAAAGAAATTTAAGATGATAAGGGCAAAATGAAATGAAAAATGGAA
14834082 GAAGCCTAAG
66 GAAGCCTAAG
*
14834092 AAGATACCTACATTCTTTTGAAAGAAATTTAAGATGATAGGGGCAAAATGAAATGAAAAATGGAA
1 AAGATACCTACATTCTTTTGAAAGAAATTTAAGATGATAAGGGCAAAATGAAATGAAAAATGGAA
14834157 GAAGCCTAAG
66 GAAGCCTAAG
14834167 AAGATA
1 AAGATA
14834173 ATTAGGAAAG
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
75 79 1.00
ACGTcount: A:0.47, C:0.09, G:0.21, T:0.23
Consensus pattern (75 bp):
AAGATACCTACATTCTTTTGAAAGAAATTTAAGATGATAAGGGCAAAATGAAATGAAAAATGGAA
GAAGCCTAAG
Found at i:14834277 original size:22 final size:21
Alignment explanation
Indices: 14834242--14834282 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14834232 ACCTATGAGT
*
14834242 TGTGATCTAATGATGGAAATAA
1 TGTGAACTAATGAT-GAAATAA
*
14834264 TGTGAACTAGTGATGAAAT
1 TGTGAACTAATGATGAAAT
14834283 TTGTTCTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (21 bp):
TGTGAACTAATGATGAAATAA
Found at i:14834332 original size:78 final size:79
Alignment explanation
Indices: 14834237--14834391 Score: 206
Period size: 78 Copynumber: 2.0 Consensus size: 79
14834227 ACATAACCTA
* * * * *
14834237 TGAGTTGTGATCTAATGATGGAAATAATGTGAA-CTAGTG-ATGAAATTTGTTCTAAAGTTGCTA
1 TGAGTTGTGATCAAATGATGGAAATAAAGTGAATC-AGTGAATGAAATTTATTCTAAAATGGCTA
*
14834300 GTGCTATGAAGCTTG
65 GTGCTAAGAAGCTTG
* * *
14834315 TGAGTTGTGATCAAATGATGGAAATAAAGTGGATCAGTGAATGGAATTTATTCTAAAATGGTTAG
1 TGAGTTGTGATCAAATGATGGAAATAAAGTGAATCAGTGAATGAAATTTATTCTAAAATGGCTAG
14834380 TGCTAAGAAGCT
66 TGCTAAGAAGCT
14834392 AAAAAAGGAA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
78 34 0.52
79 32 0.48
ACGTcount: A:0.34, C:0.07, G:0.26, T:0.34
Consensus pattern (79 bp):
TGAGTTGTGATCAAATGATGGAAATAAAGTGAATCAGTGAATGAAATTTATTCTAAAATGGCTAG
TGCTAAGAAGCTTG
Found at i:14834916 original size:27 final size:27
Alignment explanation
Indices: 14834886--14834984 Score: 137
Period size: 27 Copynumber: 3.7 Consensus size: 27
14834876 AATGAGAATC
*
14834886 TTTGAATGAGAATCGTTGTCTTTGAGT
1 TTTGAATGAGAATCTTTGTCTTTGAGT
*
14834913 TTTGAATGAAAATCTTTGTCTTTGAGT
1 TTTGAATGAGAATCTTTGTCTTTGAGT
*
14834940 TTT-AAGTGAGAATCTTTGTCTTTAAGT
1 TTTGAA-TGAGAATCTTTGTCTTTGAGT
* *
14834967 TTTAAATGAGAAACTTTG
1 TTTGAATGAGAATCTTTG
14834985 AATTTTAAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 2 0.03
27 61 0.94
28 2 0.03
ACGTcount: A:0.27, C:0.07, G:0.20, T:0.45
Consensus pattern (27 bp):
TTTGAATGAGAATCTTTGTCTTTGAGT
Found at i:14835218 original size:23 final size:23
Alignment explanation
Indices: 14835157--14835219 Score: 56
Period size: 23 Copynumber: 2.8 Consensus size: 23
14835147 TTGAACTCAA
* * *
14835157 ATGAGAAGCTTTGAA-CTTTTGG
1 ATGAGAACCTTTGAATTTTTTGC
* * *
14835179 ATGTGAACCTCTAAATTTTTTGC
1 ATGAGAACCTTTGAATTTTTTGC
*
14835202 ATGAGAATCTTTGAATTT
1 ATGAGAACCTTTGAATTT
14835220 AGATGTGAAA
Statistics
Matches: 30, Mismatches: 10, Indels: 1
0.73 0.24 0.02
Matches are distributed among these distances:
22 11 0.37
23 19 0.63
ACGTcount: A:0.29, C:0.11, G:0.19, T:0.41
Consensus pattern (23 bp):
ATGAGAACCTTTGAATTTTTTGC
Found at i:14835261 original size:22 final size:21
Alignment explanation
Indices: 14835206--14835261 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
14835196 TTTTGCATGA
*
14835206 GAATCTTTGAA-TTTAGATGT
1 GAATCTTTGAACTATAGATGT
* **
14835226 GAAACTCTAAAACTATAGAATGT
1 GAATCT-TTGAACTATAG-ATGT
14835249 GAATCTTTGAACT
1 GAATCTTTGAACT
14835262 TAAGTGAAAA
Statistics
Matches: 26, Mismatches: 7, Indels: 4
0.70 0.19 0.11
Matches are distributed among these distances:
20 5 0.19
21 3 0.12
22 9 0.35
23 9 0.35
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (21 bp):
GAATCTTTGAACTATAGATGT
Found at i:14835261 original size:108 final size:107
Alignment explanation
Indices: 14835029--14835289 Score: 364
Period size: 108 Copynumber: 2.4 Consensus size: 107
14835019 AATCTCTCAA
* *
14835029 AATGTGAATCTTTGAACTCGAATGAGAAGCTTTGAACTTTTGGATATGAACCCCAAATATTTTAA
1 AATGTGAATCTTTGAACTCAAATGAGAAGCTTTGAACTTTTGGATGTGAACCCCAAATATTTTAA
* *
14835094 ATGAGAACCTTTGAATTTGATGTGAAACTTTAAAATCAATCG
66 ATGAGAACCTTTGAATTTGATGTGAAACTCTAAAATCAATAG
* * *
14835136 AATGTGAATCTTTGAACTCAAATGAGAAGCTTTGAACTTTTGGATGTGAACCTCTAAATTTTTTG
1 AATGTGAATCTTTGAACTCAAATGAGAAGCTTTGAACTTTTGGATGTGAACC-CCAAATATTTTA
* * *
14835201 CATGAGAATCTTTGAATTTAGATGTGAAACTCTAAAA-CTATAG
65 AATGAGAACCTTTGAATTT-GATGTGAAACTCTAAAATCAATAG
* * *
14835244 AATGTGAATCTTTGAACTTAAGTGAAAAGCTTT-AACATTTTGGATG
1 AATGTGAATCTTTGAACTCAAATGAGAAGCTTTGAAC-TTTTGGATG
14835290 AAATCCTAAA
Statistics
Matches: 138, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
107 53 0.38
108 69 0.50
109 16 0.12
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (107 bp):
AATGTGAATCTTTGAACTCAAATGAGAAGCTTTGAACTTTTGGATGTGAACCCCAAATATTTTAA
ATGAGAACCTTTGAATTTGATGTGAAACTCTAAAATCAATAG
Found at i:14835656 original size:48 final size:48
Alignment explanation
Indices: 14835567--14835658 Score: 112
Period size: 48 Copynumber: 1.9 Consensus size: 48
14835557 GCTGAAAAAT
* * *
14835567 CTTACGAATTTGAAATTTTGCAAATCAAATTCTTACGAATCTTTAATC
1 CTTACGAATCTGAAATTTTGCAAATAAAATTCTTACAAATCTTTAATC
* ** * *
14835615 CTTATGAATCTGAAATTTTGGGAATAAAATTTTTGCAAATCTTT
1 CTTACGAATCTGAAATTTTGCAAATAAAATTCTTACAAATCTTT
14835659 GCATCTTACA
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
48 36 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (48 bp):
CTTACGAATCTGAAATTTTGCAAATAAAATTCTTACAAATCTTTAATC
Found at i:14835696 original size:18 final size:18
Alignment explanation
Indices: 14835662--14835727 Score: 62
Period size: 18 Copynumber: 3.7 Consensus size: 18
14835652 AATCTTTGCA
*
14835662 TCTTACAAA-CTTGAAAAT
1 TCTTACAAATC-TAAAAAT
*
14835680 TCTTGCAAATCTAAAAAT
1 TCTTACAAATCTAAAAAT
* ***
14835698 TGTTTTGAATCTAAAAAT
1 TCTTACAAATCTAAAAAT
14835716 TCTTACAAATCT
1 TCTTACAAATCT
14835728 TTGAAGAACC
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
18 36 0.97
19 1 0.03
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.38
Consensus pattern (18 bp):
TCTTACAAATCTAAAAAT
Found at i:14837671 original size:23 final size:24
Alignment explanation
Indices: 14837638--14837694 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
14837628 GTCAAGTCAA
*
14837638 TTTTTCC-TTTTTTTGGT-TTT-TT
1 TTTTTCCATTTTTAT-GTATTTATT
14837660 TTTTTCCATTTTTATGTATTTATT
1 TTTTTCCATTTTTATGTATTTATT
*
14837684 TTTTTCAATTT
1 TTTTTCCATTT
14837695 ATTTACTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 9 0.30
23 9 0.30
24 12 0.40
ACGTcount: A:0.11, C:0.09, G:0.05, T:0.75
Consensus pattern (24 bp):
TTTTTCCATTTTTATGTATTTATT
Found at i:14843454 original size:22 final size:22
Alignment explanation
Indices: 14843429--14843479 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
14843419 AGATTACCAA
14843429 TCTCTAT-TATAAACTTTAATTT
1 TCTCTATCTA-AAACTTTAATTT
*
14843451 TCTCTATGCTAAAACTTTGATTT
1 TCTCTAT-CTAAAACTTTAATTT
*
14843474 CCTCTA
1 TCTCTA
14843480 CTTGTAGCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 16 0.64
24 2 0.08
ACGTcount: A:0.27, C:0.20, G:0.04, T:0.49
Consensus pattern (22 bp):
TCTCTATCTAAAACTTTAATTT
Found at i:14855651 original size:15 final size:15
Alignment explanation
Indices: 14855625--14855670 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
14855615 TTTTCAATTG
14855625 ATTTTAATTTAG-TT
1 ATTTTAATTTAGTTT
14855639 ATTTTATATTTAGTTT
1 ATTTTA-ATTTAGTTT
* *
14855655 ATTTCAAATTAGTTT
1 ATTTTAATTTAGTTT
14855670 A
1 A
14855671 AGATTTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 6 0.21
15 15 0.54
16 7 0.25
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (15 bp):
ATTTTAATTTAGTTT
Found at i:14855772 original size:27 final size:30
Alignment explanation
Indices: 14855722--14855777 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 30
14855712 GTTTATAAGT
*
14855722 TTTTGTTATTGCATATTAAGTTGACTTAAA
1 TTTTGTTATTGCATATTAAATTGACTTAAA
*
14855752 TTTTGTT-TTG-AT-TTAAATTGATTTAA
1 TTTTGTTATTGCATATTAAATTGACTTAA
14855778 TTGTATGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 12 0.50
28 2 0.08
29 3 0.12
30 7 0.29
ACGTcount: A:0.29, C:0.04, G:0.12, T:0.55
Consensus pattern (30 bp):
TTTTGTTATTGCATATTAAATTGACTTAAA
Found at i:14868396 original size:56 final size:56
Alignment explanation
Indices: 14868330--14868502 Score: 265
Period size: 56 Copynumber: 3.1 Consensus size: 56
14868320 ATTAAAACTA
**
14868330 AGAACTAAATGCTTTAAAACAATGTTAATGTGCAATTGAATTAATTAACCCAAAAC
1 AGAACTAAATGCTTTAAAACAATGTTAACATGCAATTGAATTAATTAACCCAAAAC
* * *
14868386 AGAACTAAATGCTTTAAAAAAATGTTAACATGTAATTGAATTAATTAACCCAAAAT
1 AGAACTAAATGCTTTAAAACAATGTTAACATGCAATTGAATTAATTAACCCAAAAC
** * *
14868442 AGAACCGAATGCTTTAAAACAATGTTAACATGCAATTAAATTAATTAACCTAAAAC
1 AGAACTAAATGCTTTAAAACAATGTTAACATGCAATTGAATTAATTAACCCAAAAC
14868498 AGAAC
1 AGAAC
14868503 CTTAACCAAA
Statistics
Matches: 105, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 105 1.00
ACGTcount: A:0.49, C:0.14, G:0.10, T:0.28
Consensus pattern (56 bp):
AGAACTAAATGCTTTAAAACAATGTTAACATGCAATTGAATTAATTAACCCAAAAC
Found at i:14873457 original size:23 final size:22
Alignment explanation
Indices: 14873422--14873470 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
14873412 CCAATTTATA
14873422 AAACTCTAAAATAATGAAACCCT
1 AAACTCTAAAAT-ATGAAACCCT
* *
14873445 AAACTTTATAATATGAAACCCT
1 AAACTCTAAAATATGAAACCCT
14873467 AAAC
1 AAAC
14873471 CAATTTAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.51, C:0.20, G:0.04, T:0.24
Consensus pattern (22 bp):
AAACTCTAAAATATGAAACCCT
Found at i:14875020 original size:53 final size:53
Alignment explanation
Indices: 14874939--14875057 Score: 211
Period size: 53 Copynumber: 2.2 Consensus size: 53
14874929 TATAAAATAG
* *
14874939 AAAATTCAACCATTTAGGAGTAAAAAGAACATTATTTTGCTAAGAACGAAGTA
1 AAAAATCAACCATTTAGGAGTAAAAAGAACATTATTTTGCTAAGAACGAAGCA
14874992 AAAAATCAACCATTTAGGAGTAAAAAGAACATTATTTTGCTAAGAACGAAGCA
1 AAAAATCAACCATTTAGGAGTAAAAAGAACATTATTTTGCTAAGAACGAAGCA
*
14875045 AAAAGTCAACCAT
1 AAAAATCAACCAT
14875058 AAAAAGCACT
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 63 1.00
ACGTcount: A:0.49, C:0.13, G:0.14, T:0.24
Consensus pattern (53 bp):
AAAAATCAACCATTTAGGAGTAAAAAGAACATTATTTTGCTAAGAACGAAGCA
Found at i:14884679 original size:11 final size:12
Alignment explanation
Indices: 14884658--14884690 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14884648 ATTCTATTTC
14884658 AAAGCAAAAGAA
1 AAAGCAAAAGAA
14884670 AAAG-AAAAGAA
1 AAAGCAAAAGAA
14884681 AAAGCTAAAA
1 AAAGC-AAAA
14884691 ATTAGCTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.58
12 4 0.21
13 4 0.21
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (12 bp):
AAAGCAAAAGAA
Found at i:14884809 original size:12 final size:12
Alignment explanation
Indices: 14884785--14884821 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
14884775 TTATCGATTG
*
14884785 AAAACAAAA-AA
1 AAAAAAAAAGAA
14884796 AAAAAAAAAGAA
1 AAAAAAAAAGAA
14884808 AAAAAAAAAGAA
1 AAAAAAAAAGAA
14884820 AA
1 AA
14884822 CCAGCAATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 8 0.33
12 16 0.67
ACGTcount: A:0.92, C:0.03, G:0.05, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAGAA
Found at i:14892791 original size:10 final size:10
Alignment explanation
Indices: 14892776--14892800 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
14892766 CCACTTGGAT
14892776 AAAAAAAGAA
1 AAAAAAAGAA
14892786 AAAAAAAGAA
1 AAAAAAAGAA
14892796 AAAAA
1 AAAAA
14892801 GTTTCACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:14893885 original size:39 final size:39
Alignment explanation
Indices: 14893841--14893915 Score: 132
Period size: 39 Copynumber: 1.9 Consensus size: 39
14893831 AATATCAAGG
14893841 ACAAAATTAAGTAGACACTAAACCATACTTAATGTTAGA
1 ACAAAATTAAGTAGACACTAAACCATACTTAATGTTAGA
* *
14893880 ACAAAATTAAGTAGATACTAAACCATATTTAATGTT
1 ACAAAATTAAGTAGACACTAAACCATACTTAATGTT
14893916 CAAACAGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.29
Consensus pattern (39 bp):
ACAAAATTAAGTAGACACTAAACCATACTTAATGTTAGA
Found at i:14894686 original size:16 final size:17
Alignment explanation
Indices: 14894665--14894697 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14894655 TAGCCAAAAC
14894665 TATGCA-TGCTTGTATA
1 TATGCATTGCTTGTATA
*
14894681 TATGCATTGTTTGTATA
1 TATGCATTGCTTGTATA
14894698 ATCTTATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.24, C:0.09, G:0.18, T:0.48
Consensus pattern (17 bp):
TATGCATTGCTTGTATA
Found at i:14898488 original size:2 final size:2
Alignment explanation
Indices: 14898481--14898505 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
14898471 ATGAATTGTC
14898481 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
14898506 GTTAGCAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:14902823 original size:20 final size:19
Alignment explanation
Indices: 14902798--14902841 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
14902788 GAACAAGAAG
14902798 AAAAT-AACTAAAGGAAACTA
1 AAAATAAACTAAA-GAAA-TA
14902818 AAAATAAACTAAAGAAATA
1 AAAATAAACTAAAGAAATA
14902837 AAAAT
1 AAAAT
14902842 GGAAAAAGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.30
20 9 0.39
21 7 0.30
ACGTcount: A:0.70, C:0.07, G:0.07, T:0.16
Consensus pattern (19 bp):
AAAATAAACTAAAGAAATA
Found at i:14905365 original size:20 final size:20
Alignment explanation
Indices: 14905342--14905379 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14905332 AAAGTAATCT
14905342 TTTCGTCATAAATT-TGAAGG
1 TTTCGTCA-AAATTATGAAGG
*
14905362 TTTCTTCAAAATTATGAA
1 TTTCGTCAAAATTATGAA
14905380 CATCTATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
TTTCGTCAAAATTATGAAGG
Found at i:14906033 original size:585 final size:588
Alignment explanation
Indices: 14904897--14906062 Score: 1377
Period size: 585 Copynumber: 2.0 Consensus size: 588
14904887 TTATTCCTAA
* * *
14904897 AACAAAACAAAACAAGACAAAGCAAGATCAAGGTAAACCTATTCTAATAAAATAAAGAAAACAAA
1 AACAAAACAAAACAAGACAAAGCAAGATCAAGGAAAACATATTCTAACAAAATAAAGAAAACAAA
* * **
14904962 TAACAAAAGCATCAACAATAAAAATGAAACTTGGATTGCCTTCTAAGTAGTGCTGGCTTTGGTCA
66 TAACAAAAGCATCAACAATAAAAATGAAACTTGGATTGCCTTCTAAGCAATGAAGGCTTTGGTCA
* * * **
14905027 AACTAGACCTAACCTAAGTAACTAGAAACAACTATCATCTTGGTGGGAGTTTCTTTTGTTGTTTC
131 AACTAGACCAAACCTAAGTAACTAGAAACAACTATCATCTTAGTGAGAGTTTCCCTTGTTGTTTC
* * * * * * *
14905092 CTTCTTATTGGTATTACATAGATAGAACTAGGTTTGATAGTTAGAATTTTCTTTCTAGCAGGTAT
196 CTTCTTACTGGTATTACATAGATAGAAATAGGCTTAACAATTAGAATTTTCTTTCTAGCAAGTAT
** ** * * *
14905157 CACATAGATGGAATGAGTTGTTAGAATATGGCTTTTTGGGCTTGTCACATGAGGTTTTGGAGTTT
261 CACATAGATCAAATGAGTTACTAGAATAAGGCCTTTTGGGCTTGTCACATGAGGTTTTAGAGTTT
* * * * *
14905222 CTTTGGTTGAACTAGTGGGCTTCCTATAAGTTAATTTTTCTTTTTCTTCTACACTAGACATTTCT
326 CTTTGGTTAAACTAGTGGGCTTCCTATAAGTTAATTTTTCTTATCCTTCTACACTAAACATCTCT
* * *
14905287 TGCACTACTCTTTCTTTCTTAAAAGTGCCTTGTCCACAAGTCTTAAAAGTAATCTTTTCGTCATA
391 TGCACTACTCCTTCTTTCCTAAAAGTGCCTTGTCCACAAGTCTTAAAAGTAATCTTTTCATCATA
* * * * * **
14905352 AATTTGAAGGTTTCTTCAAAATTATGAACATCTATTAAAGCTTTTGCAGTTAGTAAAAAAGGTCT
456 AATTAGAAGGTTACTTCAAAATTATGAAAATCTATTAAAGCTTTTGCAATCAACAAAAAAGGTCT
* * *
14905417 ACCTAGCATAATAGGATCTTCATTATCAACCATGTCAAGTACTACAAAATCAACTAGGAGAGCAA
521 ACCTAGCAAAATAGAAGCTTCATTATCAACCATGTCAAGTACTACAAAATCAACTAGGAGAGCAA
14905482 ACT
586 ACT
* * *
14905485 AACAAAACAAAACAA-ACAAAGTAAGATCAAGGAAAACATGTTTTAACAAAATAAAGAAAACAAA
1 AACAAAACAAAACAAGACAAAGCAAGATCAAGGAAAACATATTCTAACAAAATAAAGAAAACAAA
*** *
14905549 TAACAAAAGCATCAATTTTGAAAAA-GAAACTTAGG-TTGCCTT-TCAAGCAAT-AAGGATTTTG
66 TAACAAAAGCATCAACAAT-AAAAATGAAACTT-GGATTGCCTTCT-AAGCAATGAAGG-CTTTG
* *** * * * *
14905610 GTTAGGTTGGACCAAACCTAAGTAACTAGAAACAACTATC-CCTTTAGTGATATTTTCCCTTGTT
127 GTCAAACTAGACCAAACCTAAGTAACTAGAAACAACTATCATC-TTAGTGAGAGTTTCCCTTGTT
* * * * ** *
14905674 GTTT-CTTTTTCCTGGTATTACATTGATA-AAATTGTGCTTAACAATTAGTTTTTTTTTTCTAGC
191 GTTTCCTTCTTACTGGTATTACATAGATAGAAATAG-GCTTAACAATTAGAATTTTCTTTCTAGC
* *
14905737 AAGTATCATATAGA-CAAATGAGTTACTGGAATAAGGCCTTTTGGGCTTGTCACATGAGGTTTTA
255 AAGTATCACATAGATCAAATGAGTTACTAGAATAAGGCCTTTTGGGCTTGTCACATGAGGTTTTA
* * **
14905801 GAGTTTTTTTGGTTAAACTAGTGGGCTTCTTATAAGTTAATTTTTCCTTATCCTT-TATGCTAAA
320 GAGTTTCTTTGGTTAAACTAGTGGGCTTCCTATAAGTTAATTTTT-CTTATCCTTCTACACTAAA
* * * * *
14905865 CA-CTCATTGCATTGCTCCTTCTTTCCTAAAGGTGCCTTGTCCATATGTCTTAAAAGTAATCTTT
384 CATCTC-TTGCACTACTCCTTCTTTCCTAAAAGTGCCTTGTCCACAAGTCTTAAAAGTAATCTTT
* * * *
14905929 TCATCCTAAATCTAG-AGGTTACTTTAAAATTATGAAAATCTATTAAAGCTTTTGTAATCAACGA
448 TCATCATAAAT-TAGAAGGTTACTTCAAAATTATGAAAATCTATTAAAGCTTTTGCAATCAACAA
* * * *
14905993 AAAAGGTCTACTTAGCAAAAT-GAAAGCTTTATTGTCAACCATGTCAAGTATTACAAAATCAACT
512 AAAAGGTCTACCTAGCAAAATAG-AAGCTTCATTATCAACCATGTCAAGTACTACAAAATCAACT
*
14906057 ATGAGA
576 AGGAGA
14906063 CTCATCCACT
Statistics
Matches: 482, Mismatches: 86, Indels: 23
0.82 0.15 0.04
Matches are distributed among these distances:
584 3 0.01
585 256 0.53
586 66 0.14
587 135 0.28
588 22 0.05
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (588 bp):
AACAAAACAAAACAAGACAAAGCAAGATCAAGGAAAACATATTCTAACAAAATAAAGAAAACAAA
TAACAAAAGCATCAACAATAAAAATGAAACTTGGATTGCCTTCTAAGCAATGAAGGCTTTGGTCA
AACTAGACCAAACCTAAGTAACTAGAAACAACTATCATCTTAGTGAGAGTTTCCCTTGTTGTTTC
CTTCTTACTGGTATTACATAGATAGAAATAGGCTTAACAATTAGAATTTTCTTTCTAGCAAGTAT
CACATAGATCAAATGAGTTACTAGAATAAGGCCTTTTGGGCTTGTCACATGAGGTTTTAGAGTTT
CTTTGGTTAAACTAGTGGGCTTCCTATAAGTTAATTTTTCTTATCCTTCTACACTAAACATCTCT
TGCACTACTCCTTCTTTCCTAAAAGTGCCTTGTCCACAAGTCTTAAAAGTAATCTTTTCATCATA
AATTAGAAGGTTACTTCAAAATTATGAAAATCTATTAAAGCTTTTGCAATCAACAAAAAAGGTCT
ACCTAGCAAAATAGAAGCTTCATTATCAACCATGTCAAGTACTACAAAATCAACTAGGAGAGCAA
ACT
Found at i:14906898 original size:59 final size:59
Alignment explanation
Indices: 14906827--14907192 Score: 271
Period size: 59 Copynumber: 6.0 Consensus size: 59
14906817 TTATACAAGG
*
14906827 AAAATTGATACTTTCAACTTTTTCTTAAAAATATTTTTCTTCAAAA-TTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTT-TTCAAAATTTTATTTTTAAGA
* * * * * * *
14906886 AAAATTGGTACTTCCAACTTTTCCTCAAGAAATGCCCTTTTTTTTAAAAATTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTTAA-AAAT----ATTTTTTTCAAAA-TTTTATTTTTAAGA
* * * * *
14906951 AAAATTAATACTTTCAACTTTTCCTTAAAAAT-CTCTTCTGAAAATCTTTTTTTCTTATTTTTAA
1 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTCAAAA-------TT-TTATTTTTAA
*
14907015 GG
58 GA
* * *
14907017 AAAATTGATACTTTCAACTTTTCCTTAAAAATA-TTTTTTGAAAATTTTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTCAAAA-TTTTATTTTTAAGA
* * * * *
14907076 GAAATTGATACTTTCAAC-TTTCCATCAAAAATATATTTTTT--AATTTTTA-TGTTAAAA
1 AAAATTGATACTTTCAACTTTTCC-TTAAAAATAT-TTTTTTCAAAATTTTATTTTTAAGA
* * *
14907133 AGAAATTGATACATTCAACTTTT-CTTCAAAAATATTTTTTTCAAAATTTCATTTTAAAGA
1 A-AAATTGATACTTTCAACTTTTCCTT-AAAAATATTTTTTTCAAAATTTTATTTTTAAGA
14907193 GATCATTGAA
Statistics
Matches: 247, Mismatches: 36, Indels: 47
0.75 0.11 0.14
Matches are distributed among these distances:
57 11 0.04
58 35 0.14
59 79 0.32
60 12 0.05
61 6 0.02
63 6 0.02
64 9 0.04
65 38 0.15
66 51 0.21
ACGTcount: A:0.36, C:0.13, G:0.06, T:0.46
Consensus pattern (59 bp):
AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTCAAAATTTTATTTTTAAGA
Found at i:14907021 original size:66 final size:67
Alignment explanation
Indices: 14906939--14907071 Score: 205
Period size: 66 Copynumber: 2.0 Consensus size: 67
14906929 TTAAAAATTT
*
14906939 TTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAATCTCTTCTGAAAATCTTT-TTT
1 TTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAATATCTTCTGAAAATCTTTATTT
14907003 TC
66 TC
* * * * *
14907005 TTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTGAAAATTTTTATTT
1 TTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAATATCTTCTGAAAATCTTTATTT
14907070 TC
66 TC
14907072 AAGGGAAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
66 55 0.92
67 5 0.08
ACGTcount: A:0.32, C:0.13, G:0.05, T:0.50
Consensus pattern (67 bp):
TTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAATATCTTCTGAAAATCTTTATTT
TC
Found at i:14907106 original size:125 final size:127
Alignment explanation
Indices: 14906874--14907107 Score: 321
Period size: 125 Copynumber: 1.8 Consensus size: 127
14906864 TCTTCAAAAT
* *
14906874 TTATTTTTAAGAAAAATTGGTACTTCCAACTTTTCCTCAAGAAATGCCCTTTTTTTTAAAAATTT
1 TTATTTTTAAGAAAAATTGATACTTCCAACTTTTCCTCAAGAAA----CTATTTTTTAAAAATTT
*
14906939 TTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTTAAAAATCTCTTCTGAAAATCTTTTTTT
62 TTATTTTCAAGGAAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTCTGAAAATCTTTTTTT
14907004 C
127 C
* * * *
14907005 TTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCTTAA-AAA-TATTTTTTGAAAATTTTTAT
1 TTATTTTTAAGAAAAATTGATACTTCCAACTTTTCCTCAAGAAACTATTTTTTAAAAATTTTTAT
* *
14907068 TTTCAAGGGAAATTGATACTTTCAAC-TTTCCATCAAAAAT
66 TTTCAAGGAAAATTAATACTTTCAACTTTTCC-TCAAAAAT
14907108 ATATTTTTTA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
124 5 0.05
125 49 0.53
130 3 0.03
131 36 0.39
ACGTcount: A:0.34, C:0.14, G:0.07, T:0.45
Consensus pattern (127 bp):
TTATTTTTAAGAAAAATTGATACTTCCAACTTTTCCTCAAGAAACTATTTTTTAAAAATTTTTAT
TTTCAAGGAAAATTAATACTTTCAACTTTTCCTCAAAAATCTCTTCTGAAAATCTTTTTTTC
Found at i:14907138 original size:58 final size:56
Alignment explanation
Indices: 14907018--14907173 Score: 186
Period size: 58 Copynumber: 2.7 Consensus size: 56
14907008 TTTTTAAGGA
* * * * **
14907018 AAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTGAAAATTTTTATTTTCAAGGG
1 AAATTGATACTTTCAAC-TTTCCTCAAAAATATTTTTT--TAATTTTTATGTTAAAAAG
14907077 AAATTGATACTTTCAACTTTCCATCAAAAATATATTTTTTAATTTTTATGTTAAAAAG
1 AAATTGATACTTTCAACTTTCC-TCAAAAATAT-TTTTTTAATTTTTATGTTAAAAAG
* *
14907135 AAATTGATACATTCAACTTTTCTTCAAAAATATTTTTTT
1 AAATTGATACTTTCAAC-TTTCCTCAAAAATATTTTTTT
14907174 CAAAATTTCA
Statistics
Matches: 86, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
57 6 0.07
58 45 0.52
59 30 0.35
60 5 0.06
ACGTcount: A:0.37, C:0.11, G:0.06, T:0.47
Consensus pattern (56 bp):
AAATTGATACTTTCAACTTTCCTCAAAAATATTTTTTTAATTTTTATGTTAAAAAG
Found at i:14908422 original size:43 final size:43
Alignment explanation
Indices: 14908334--14908480 Score: 147
Period size: 44 Copynumber: 3.3 Consensus size: 43
14908324 CACATTTTTT
* * * *
14908334 TTTGAAAAAAATAACAAAGCTCCTCTAAATATAGGCTA-AATAAC
1 TTTGAAAAAAATAA-AATGCTCCTCTAAACAGAGGC-ACAACAAC
*
14908378 TTTGAAAAAAATAAAATGCTCCTCTAAACAGAGGCACCACAAC
1 TTTGAAAAAAATAAAATGCTCCTCTAAACAGAGGCACAACAAC
* * *
14908421 TTTGGAAATATAAAT--AATGCTACTCTAAACAGAGACTCAACAAC
1 TTT-GAAA-A-AAATAAAATGCTCCTCTAAACAGAGGCACAACAAC
14908465 TTTTGAAAAAAATAAA
1 -TTTGAAAAAAATAAA
14908481 CAAAGCTCCT
Statistics
Matches: 87, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
42 5 0.06
43 26 0.30
44 48 0.55
45 4 0.05
46 4 0.05
ACGTcount: A:0.49, C:0.17, G:0.10, T:0.24
Consensus pattern (43 bp):
TTTGAAAAAAATAAAATGCTCCTCTAAACAGAGGCACAACAAC
Found at i:14908644 original size:14 final size:14
Alignment explanation
Indices: 14908625--14908675 Score: 50
Period size: 16 Copynumber: 3.4 Consensus size: 14
14908615 GGATTCACTG
14908625 AAATTTGATTCTCA
1 AAATTTGATTCTCA
*
14908639 AAATTTTAGTTTCTCA
1 AAA-TTT-GATTCTCA
14908655 AGAATTTGATTCAT-A
1 A-AATTTGATTC-TCA
14908670 AAATTT
1 AAATTT
14908676 CAAATGTGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 8 0.26
15 9 0.29
16 12 0.39
17 2 0.06
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (14 bp):
AAATTTGATTCTCA
Found at i:14908991 original size:114 final size:114
Alignment explanation
Indices: 14908789--14909057 Score: 405
Period size: 114 Copynumber: 2.4 Consensus size: 114
14908779 CACATCTAAA
* **** * *
14908789 AGTTCAAAGCTTTTCATTTGAATTCAAAAGGTTCACATTCAAGAAATCTTAGAATTTCACATCTA
1 AGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAATTTCACATCTA
* *
14908854 AGTTCAAAAGTTCTCACTCAAAAATTTAGAAATTCGCATCCAAAAGTTG
66 AGTTCAAAAGTTCTCACTAAAAAAATTAGAAATTCGCATCCAAAAGTTG
*
14908903 AGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAGTTTCACATCTA
1 AGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAATTTCACATCTA
* *
14908968 AGTTCAAAGGTTCTCGCTAAAAAAATTAGAAATTCGCATCCAAAAGTTG
66 AGTTCAAAAGTTCTCACTAAAAAAATTAGAAATTCGCATCCAAAAGTTG
* *
14909017 AG-TCAAAGCTTTTTGTTTGAATTTTGGAGATTTACATCCAA
1 AGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCACATCCAA
14909058 AAGTTCAAAA
Statistics
Matches: 141, Mismatches: 14, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
113 37 0.26
114 104 0.74
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.34
Consensus pattern (114 bp):
AGTTCAAAGCTTTTCGTTTGAATTTTGGAGATTCACATCCAAGAAATCTTAGAATTTCACATCTA
AGTTCAAAAGTTCTCACTAAAAAAATTAGAAATTCGCATCCAAAAGTTG
Found at i:14909148 original size:21 final size:20
Alignment explanation
Indices: 14909119--14909172 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
14909109 TTCACATCTT
14909119 AAAGATTCTCATTTGAAATTC
1 AAAGATTCTCATTT-AAATTC
* * *
14909140 AAAGGTTCTTATTTCAATTC
1 AAAGATTCTCATTTAAATTC
*
14909160 AAAGATTCACATT
1 AAAGATTCTCATT
14909173 CGACAAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (20 bp):
AAAGATTCTCATTTAAATTC
Found at i:14909220 original size:21 final size:21
Alignment explanation
Indices: 14909196--14909236 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
14909186 GTTTCACACC
14909196 TCAAAGATTCTT-ATTTGAAAT
1 TCAAAGATT-TTCATTTGAAAT
14909217 TCAAAGATTTTCATTTGAAA
1 TCAAAGATTTTCATTTGAAA
14909237 CTTAAAAATG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (21 bp):
TCAAAGATTTTCATTTGAAAT
Found at i:14909277 original size:21 final size:22
Alignment explanation
Indices: 14909251--14909691 Score: 402
Period size: 21 Copynumber: 19.6 Consensus size: 22
14909241 AAAATGTCTT
14909251 AAAGATTCTCATTT-AAGACTC
1 AAAGATTCTCATTTGAAGACTC
*
14909272 AAAGATTCTCATTTGAA-ACTT
1 AAAGATTCTCATTTGAAGACTC
*
14909293 AAAGATTCTCATTTGAAAACATC
1 AAAGATTCTCATTTGAAGAC-TC
*
14909316 TTAAAGATTCTCATTT-AAAACTC
1 --AAAGATTCTCATTTGAAGACTC
* * *
14909339 AAAGATTCTCATTTAAAAATGCCTT
1 AAAGATTCTCATTT--GAA-GACTC
* *
14909364 AAAGATTTTCATTT-AAGACTT
1 AAAGATTCTCATTTGAAGACTC
* * *
14909385 AAATATTCTCATTTGAAGATGTTTT
1 AAAGATTCTCATTTGAAGA---CTC
*
14909410 AAAGATTCTCATTT-AAGACTA
1 AAAGATTCTCATTTGAAGACTC
* *
14909431 AAAAATTCTCATTTGAA-ACTT
1 AAAGATTCTCATTTGAAGACTC
* *
14909452 AAAGATTCTCATTTGAAAATGTCTT
1 AAAGATTCTCATTTG--AA-GACTC
14909477 AAAGATTCTCATTT-AAGACTC
1 AAAGATTCTCATTTGAAGACTC
* * *
14909498 CAAGATTTTCATTTGAAGATGTCTT
1 AAAGATTCTCATTTGAAGA---CTC
14909523 AAAGATTCTCA-TTGAAGACTC
1 AAAGATTCTCATTTGAAGACTC
14909544 AAAGATTCTCATTTGAA-ACTC
1 AAAGATTCTCATTTGAAGACTC
14909565 AAAGATTCTCATTTGAA-ACTC
1 AAAGATTCTCATTTGAAGACTC
* * *
14909586 AAAGATTTTCATTTGAAAATGTCTT
1 AAAGATTCTCATTTG--AA-GACTC
14909611 AAAGATTCTCATTT-AAGACTC
1 AAAGATTCTCATTTGAAGACTC
14909632 AAAGATTCTCATTTGAA-ACTC
1 AAAGATTCTCATTTGAAGACTC
*
14909653 AAAGATTCTCATTTGAAGATTTCTT
1 AAAGATTCTCATTTGAAGA---CTC
14909678 AAAGATTCTCATTT
1 AAAGATTCTCATTT
14909692 TAAAAAAATC
Statistics
Matches: 356, Mismatches: 32, Indels: 60
0.79 0.07 0.13
Matches are distributed among these distances:
21 200 0.56
22 28 0.08
23 7 0.02
24 18 0.05
25 103 0.29
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (22 bp):
AAAGATTCTCATTTGAAGACTC
Found at i:14909337 original size:46 final size:43
Alignment explanation
Indices: 14909248--14909696 Score: 415
Period size: 46 Copynumber: 10.0 Consensus size: 43
14909238 TTAAAAATGT
*
14909248 CTTAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAAA
1 CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAA
*
14909290 CTTAAAGATTCTCATTTGAAAACATCTTAAAGATTCTCATTTAAAA
1 CTTAAAGATTCTCATTTGAAGAC-TC--AAAGATTCTCATTTAAAA
* * * * * *
14909336 CTCAAAGATTCTCATTTAAAAATGCCTTAAAGATTTTCATTTAAGA
1 CTTAAAGATTCTCATTT--GAA-GACTCAAAGATTCTCATTTAAAA
* * * *
14909382 CTTAAATATTCTCATTTGAAGATGTTTTAAAGATTCTCATTTAAGA
1 CTTAAAGATTCTCATTTGAAGA---CTCAAAGATTCTCATTTAAAA
* * *
14909428 CTAAAAAATTCTCATTTGAA-ACTTAAAGATTCTCATTTGAAAA
1 CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTT-AAAA
* * *
14909471 TGTCTTAAAGATTCTCATTT-AAGACTCCAAGATTTTCATTTGAAGATGT
1 ---CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTT-AA-A--A
*
14909520 CTTAAAGATTCTCA-TTGAAGACTCAAAGATTCTCATTTGAAA
1 CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAA
* *
14909562 CTCAAAGATTCTCATTTGAA-ACTCAAAGATTTTCATTTGAAAA
1 CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTT-AAAA
*
14909605 TGTCTTAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTGAAA
1 ---CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAA
* *
14909650 CTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTTTAAAA
1 CTTAAAGATTCTCATTTGAAGA---CTCAAAGATTCTCA-TTTAAAA
14909697 AAATCAGAAT
Statistics
Matches: 339, Mismatches: 38, Indels: 55
0.78 0.09 0.13
Matches are distributed among these distances:
42 79 0.23
43 20 0.06
44 5 0.01
45 11 0.03
46 213 0.63
47 7 0.02
48 3 0.01
49 1 0.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (43 bp):
CTTAAAGATTCTCATTTGAAGACTCAAAGATTCTCATTTAAAA
Found at i:14909678 original size:67 final size:67
Alignment explanation
Indices: 14909248--14909691 Score: 468
Period size: 67 Copynumber: 6.6 Consensus size: 67
14909238 TTAAAAATGT
* *
14909248 CTTAAAGATTCTCATTT-AAGA---CTCAAAGATTCTCATTTGAA-ACTTAAAGATTCTCATTTG
1 CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTT-AAGACTCAAAGATTCTCATTTG
14909308 AAAACA
65 --AA-A
* * * * *
14909314 TCTTAAAGATTCTCATTT-AA-A--ACTCAAAGATTCTCATTTAAAAATGCCTTAAAGATTTTCA
1 -CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTT---AA-GACTCAAAGATTCTCA
14909375 TTT-AAGA
61 TTTGAA-A
* * * *
14909382 CTTAAATATTCTCATTTGAAGATGTTTTAAAGATTCTCATTTAAGACTAAAAAATTCTCATTTGA
1 CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
14909447 AA
66 AA
* * *
14909449 CTTAAAGATTCTCATTTGAAAATGTCTTAAAGATTCTCATTTAAGACTCCAAGATTTTCATTTGA
1 CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
14909514 AGA
66 A-A
*
14909517 TGTCTTAAAGATTCTCA-TTGAAGA---CTCAAAGATTCTCATTTGAA-ACTCAAAGATTCTCAT
1 ---CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTT-AAGACTCAAAGATTCTCAT
14909577 TTGAAA
62 TTGAAA
* * *
14909583 CTCAAAGATTTTCATTTGAAAATGTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
1 CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
14909648 AA
66 AA
* *
14909650 CTCAAAGATTCTCATTTGAAGATTTCTTAAAGATTCTCATTT
1 CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTT
14909692 TAAAAAAATC
Statistics
Matches: 327, Mismatches: 30, Indels: 40
0.82 0.08 0.10
Matches are distributed among these distances:
63 12 0.04
64 6 0.02
66 4 0.01
67 239 0.73
68 12 0.04
69 3 0.01
70 6 0.02
71 45 0.14
ACGTcount: A:0.37, C:0.15, G:0.10, T:0.38
Consensus pattern (67 bp):
CTTAAAGATTCTCATTTGAAGATGTCTTAAAGATTCTCATTTAAGACTCAAAGATTCTCATTTGA
AA
Found at i:14910983 original size:10 final size:9
Alignment explanation
Indices: 14910970--14911112 Score: 58
Period size: 9 Copynumber: 14.4 Consensus size: 9
14910960 TTTTTTTCCA
14910970 TTTTCATTTT
1 TTTTC-TTTT
*
14910980 TTTTCTCTT
1 TTTTCTTTT
14910989 TTTTCTTATT
1 TTTTCTT-TT
14910999 TTTTCTTTCAT
1 TTTTCTTT--T
14911010 TTTTCATCTTT
1 TTTTC-T-TTT
14911021 CATTTTCTTTT
1 --TTTTCTTTT
*
14911032 TCTTTC--CT
1 T-TTTCTTTT
14911040 TTTTCATTTT
1 TTTTC-TTTT
*
14911050 TTCTCTTTT
1 TTTTCTTTT
**
14911059 TTTTCATCCAT
1 TTTTC-T-TTT
14911070 TTTTCTTTT
1 TTTTCTTTT
14911079 TCACTTT-TTTAT
1 T---TTTCTTT-T
*
14911091 TTTTATTTT
1 TTTTCTTTT
*
14911100 TTCTCTTTT
1 TTTTCTTTT
14911109 TTTT
1 TTTT
14911113 TTCTCTCATC
Statistics
Matches: 102, Mismatches: 13, Indels: 37
0.67 0.09 0.24
Matches are distributed among these distances:
7 4 0.04
8 2 0.02
9 35 0.34
10 28 0.27
11 19 0.19
12 7 0.07
13 7 0.07
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:14910992 original size:19 final size:19
Alignment explanation
Indices: 14910970--14911065 Score: 57
Period size: 19 Copynumber: 5.4 Consensus size: 19
14910960 TTTTTTTCCA
14910970 TTTTCATTTTTTTTCTCTT
1 TTTTCATTTTTTTTCTCTT
*
14910989 TTTTC-TTATTTTT-TC--
1 TTTTCATTTTTTTTCTCTT
**
14911004 -TTTCATTTTTCATCT-TT
1 TTTTCATTTTTTTTCTCTT
14911021 CATTTTC-TTTTTCTTTC-C-T
1 --TTTTCATTTTT-TTTCTCTT
* *
14911040 TTTTCATTTTTTCTCTTTT
1 TTTTCATTTTTTTTCTCTT
14911059 TTTTCAT
1 TTTTCAT
14911066 CCATTTTTCT
Statistics
Matches: 57, Mismatches: 8, Indels: 24
0.64 0.09 0.27
Matches are distributed among these distances:
14 4 0.07
15 5 0.09
16 1 0.02
17 10 0.18
18 12 0.21
19 19 0.33
20 6 0.11
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (19 bp):
TTTTCATTTTTTTTCTCTT
Found at i:14911013 original size:30 final size:29
Alignment explanation
Indices: 14910979--14911114 Score: 104
Period size: 30 Copynumber: 4.7 Consensus size: 29
14910969 ATTTTCATTT
14910979 TTTTTCTCTTTTTTCTTATTTTTTCTTTCA
1 TTTTTCTCTTTTTTCTT-TTTTTTCTTTCA
* * *
14911009 TTTTTCATCTTTCATT-TTCTTTTTCTTTCC
1 TTTTTC-TCTTT-TTTCTTTTTTTTCTTTCA
* *
14911039 TTTTTCAT-TTTTTCTCTTTTTTTTCATCCA
1 TTTTTC-TCTTTTT-TCTTTTTTTTCTTTCA
**
14911069 TTTTTCT-TTTTCACTTTTTTATT-TTT-A
1 TTTTTCTCTTTTTTCTTTTTT-TTCTTTCA
14911096 TTTTTTCTCTTTTTT-TTTT
1 -TTTTTCTCTTTTTTCTTTT
14911115 CTCTCATCTT
Statistics
Matches: 85, Mismatches: 14, Indels: 16
0.74 0.12 0.14
Matches are distributed among these distances:
27 1 0.01
28 20 0.24
29 15 0.18
30 40 0.47
31 7 0.08
32 2 0.02
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (29 bp):
TTTTTCTCTTTTTTCTTTTTTTTCTTTCA
Found at i:14911033 original size:59 final size:56
Alignment explanation
Indices: 14910970--14911114 Score: 145
Period size: 60 Copynumber: 2.5 Consensus size: 56
14910960 TTTTTTTCCA
* *
14910970 TTTTCATTTTTTTTCTCTTTTTTCTTATTTTTTCTTTCATTTTTCATCTTTCA-TTTTCT
1 TTTTC-TTTTTTTTCTCTTTTTTCTT-TTTTTTCATCCATTTTTC-TCTTTCACTTTT-T
*
14911029 TTTTCTTTCCTTTTTCAT-TTTTTCTCTTTTTTTTCATCCATTTTTCTTTTTCACTTTTT
1 TTTTCTTT--TTTTTC-TCTTTTT-TCTTTTTTTTCATCCATTTTTCTCTTTCACTTTTT
14911088 TATTT-TTATTTTTTCTCTTTTTT-TTTT
1 T-TTTCTT-TTTTTTCTCTTTTTTCTTTT
14911115 CTCTCATCTT
Statistics
Matches: 75, Mismatches: 3, Indels: 19
0.77 0.03 0.20
Matches are distributed among these distances:
56 4 0.05
57 2 0.03
58 14 0.19
59 15 0.20
60 35 0.47
61 5 0.07
ACGTcount: A:0.08, C:0.17, G:0.00, T:0.76
Consensus pattern (56 bp):
TTTTCTTTTTTTTCTCTTTTTTCTTTTTTTTCATCCATTTTTCTCTTTCACTTTTT
Found at i:14911087 original size:15 final size:13
Alignment explanation
Indices: 14911069--14911116 Score: 53
Period size: 13 Copynumber: 3.5 Consensus size: 13
14911059 TTTTCATCCA
14911069 TTTTTCTTTTTCACT
1 TTTTTCTTTTT-A-T
*
14911084 TTTTTATTTTTAT
1 TTTTTCTTTTTAT
14911097 TTTTTCTCTTTT-T
1 TTTTTCT-TTTTAT
14911110 TTTTTCT
1 TTTTTCT
14911117 CTCATCTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
13 15 0.50
14 5 0.17
15 10 0.33
ACGTcount: A:0.06, C:0.12, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTTCTTTTTAT
Found at i:14911092 original size:21 final size:22
Alignment explanation
Indices: 14911068--14911114 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
14911058 TTTTTCATCC
14911068 ATTTTT-CTTTTTCACTTTTTT
1 ATTTTTACTTTTTCACTTTTTT
* *
14911089 ATTTTTATTTTTTCTCTTTTTT
1 ATTTTTACTTTTTCACTTTTTT
14911111 -TTTT
1 ATTTT
14911115 CTCTCATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.81
Consensus pattern (22 bp):
ATTTTTACTTTTTCACTTTTTT
Found at i:14911500 original size:19 final size:19
Alignment explanation
Indices: 14911476--14911512 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14911466 GTGGCATTCA
14911476 TTTTTTTCCTTTTTTTTTC
1 TTTTTTTCCTTTTTTTTTC
*
14911495 TTTTTTTTCTTTTTTTTT
1 TTTTTTTCCTTTTTTTTT
14911513 TCTATCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (19 bp):
TTTTTTTCCTTTTTTTTTC
Found at i:14911501 original size:20 final size:20
Alignment explanation
Indices: 14911476--14911515 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
14911466 GTGGCATTCA
14911476 TTTTTTTCCTTTTTTTTTCT
1 TTTTTTTCCTTTTTTTTTCT
*
14911496 TTTTTTTCTTTTTTTTTTCT
1 TTTTTTTCCTTTTTTTTTCT
14911516 ATCTTTTAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (20 bp):
TTTTTTTCCTTTTTTTTTCT
Found at i:14911512 original size:10 final size:10
Alignment explanation
Indices: 14911476--14911512 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
14911466 GTGGCATTCA
*
14911476 TTTTTTTCCT
1 TTTTTTTTCT
14911486 TTTTTTTTC-
1 TTTTTTTTCT
14911495 TTTTTTTTCT
1 TTTTTTTTCT
14911505 TTTTTTTT
1 TTTTTTTT
14911513 TCTATCTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.36
10 16 0.64
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (10 bp):
TTTTTTTTCT
Found at i:14911515 original size:11 final size:11
Alignment explanation
Indices: 14911476--14911515 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
14911466 GTGGCATTCA
*
14911476 TTTTTTTCCTT
1 TTTTTTTCTTT
14911487 TTTTTTTC--T
1 TTTTTTTCTTT
14911496 TTTTTTTCTTT
1 TTTTTTTCTTT
14911507 TTTTTTTCT
1 TTTTTTTCT
14911516 ATCTTTTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.33
11 18 0.67
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:14911522 original size:11 final size:9
Alignment explanation
Indices: 14911476--14911511 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
14911466 GTGGCATTCA
*
14911476 TTTTTTTCC
1 TTTTTTTTC
14911485 TTTTTTTTTC
1 -TTTTTTTTC
14911495 TTTTTTTTC
1 TTTTTTTTC
14911504 TTTTTTTT
1 TTTTTTTT
14911512 TTCTATCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
9 17 0.68
10 8 0.32
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:14911522 original size:20 final size:20
Alignment explanation
Indices: 14911479--14911522 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
14911469 GCATTCATTT
* *
14911479 TTTTCCTTTTTTTTTCTTTT
1 TTTTCCTTTTTTTTTCTATC
*
14911499 TTTTCTTTTTTTTTTCTATC
1 TTTTCCTTTTTTTTTCTATC
14911519 TTTT
1 TTTT
14911523 AGACTTTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.02, C:0.14, G:0.00, T:0.84
Consensus pattern (20 bp):
TTTTCCTTTTTTTTTCTATC
Found at i:14915178 original size:59 final size:58
Alignment explanation
Indices: 14915107--14915284 Score: 225
Period size: 59 Copynumber: 3.0 Consensus size: 58
14915097 TTATATAAGG
* *
14915107 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTGAAAATTTTTATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTT-TAAATTTTTATTTTAAAGA
* *
14915166 AAAATTGATACTTTCAACTTTCCCTTAAAAATATATATTTTTTTAATTTTTATGTTTAAAG-
1 AAAATTGATACTTTCAACTTTTCCTT-AAAA-ATAT-TTTTTTAAATTTTTAT-TTTAAAGA
* * *
14915227 GAAATTGATACATTCAAC-TTTCCTTCAAAAATATTTTTTTAAATTTTCATTTTAAAGA
1 AAAATTGATACTTTCAACTTTTCCTT-AAAAATATTTTTTTAAATTTTTATTTTAAAGA
14915285 GATCATTGAA
Statistics
Matches: 104, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
57 7 0.07
58 14 0.13
59 29 0.28
60 14 0.13
61 29 0.28
62 11 0.11
ACGTcount: A:0.37, C:0.11, G:0.05, T:0.47
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTTAAAAATATTTTTTTAAATTTTTATTTTAAAGA
Found at i:14916258 original size:8 final size:8
Alignment explanation
Indices: 14916241--14916279 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
14916231 CTCAAACACC
*
14916241 TTTTTCTA
1 TTTTTTTA
14916249 TTTTTTTA
1 TTTTTTTA
14916257 TTTTTATTA
1 TTTTT-TTA
*
14916266 TTTTTTAA
1 TTTTTTTA
14916274 TTTTTT
1 TTTTTT
14916280 AATTGCCAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 20 0.71
9 8 0.29
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:14920584 original size:53 final size:52
Alignment explanation
Indices: 14920481--14920586 Score: 124
Period size: 53 Copynumber: 2.0 Consensus size: 52
14920471 TGACTTAAAT
* * *
14920481 CATTTCTTGAGTCTAGTATAGCCTAGAATTTTGCTTCAAGGATTAGTAGGCAA
1 CATTTCTTGAGTCAAGTATAGCCTAGAATTTTGC-TCAAGGATGAATAGGCAA
* * *
14920534 CATTTCTTGAGTCAAGTATAGCTTAGGATTTCATG-TCAAGGGTGAATAGGCAA
1 CATTTCTTGAGTCAAGTATAGCCTAGAATTT--TGCTCAAGGATGAATAGGCAA
14920587 ATTCTAAAGT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
53 43 0.96
55 2 0.04
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (52 bp):
CATTTCTTGAGTCAAGTATAGCCTAGAATTTTGCTCAAGGATGAATAGGCAA
Found at i:14921828 original size:180 final size:180
Alignment explanation
Indices: 14921521--14921877 Score: 470
Period size: 180 Copynumber: 2.0 Consensus size: 180
14921511 TAATCCAGTG
*
14921521 AAAATTTAGCTTCAAATTCAATCTCTACAGGTATAGTTTATTCCTCAAATTTACAGCTAGATCCA
1 AAAATTTAGCTTCAAATTCAATCTCTACAGGTATAGTTTATTCCTCAAAATTACAGCTAGATCCA
* * * *
14921586 AAAGGTAGAAACAACATGTACATGAATGATAGCATTGCAATGATCCACTCTCCTTTTAGGTGATT
66 AAAGGCAAAAACAACATG-ACATGAATGACAGCATTGCAATGATCAACTCTCCTTTTAGGTGATT
* *
14921651 AGTTTGCTTCTCTCAAATCTTT-CACTCTTAGATTTACATG-TTACTTAGTA
130 AATTTCCTTCTCTCAAAT-TTTACACTCTTAGATTTACATGTTTACTTAGTA
* * * * ** * * *
14921701 AAAATTTAGCTTCAAATTCAATTTGTATAGGTATAGTTTATTCCTTAAAATTATGGTTGGATCTA
1 AAAATTTAGCTTCAAATTCAATCTCTACAGGTATAGTTTATTCCTCAAAATTACAGCTAGATCCA
*
14921766 AAAGGCAAAAACAATCTATG-CATGAATGACAGCATTGTAATGATCAACTCT-CTTTCTAGGTGA
66 AAAGGCAAAAACAA-C-ATGACATGAATGACAGCATTGCAATGATCAACTCTCCTTT-TAGGTGA
* *
14921829 TTAATTTCCTTCTTTCAAATTTTACACTCTTATATTTACATGTTTACTT
128 TTAATTTCCTTCTCTCAAATTTTACACTCTTAGATTTACATGTTTACTT
14921878 GCTTCTTTTC
Statistics
Matches: 153, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
179 7 0.05
180 136 0.89
181 7 0.05
182 3 0.02
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.38
Consensus pattern (180 bp):
AAAATTTAGCTTCAAATTCAATCTCTACAGGTATAGTTTATTCCTCAAAATTACAGCTAGATCCA
AAAGGCAAAAACAACATGACATGAATGACAGCATTGCAATGATCAACTCTCCTTTTAGGTGATTA
ATTTCCTTCTCTCAAATTTTACACTCTTAGATTTACATGTTTACTTAGTA
Found at i:14924284 original size:21 final size:20
Alignment explanation
Indices: 14924251--14924290 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
14924241 AAATTATCAT
*
14924251 CATGCTTATTTGATTAATTA
1 CATGCTTACTTGATTAATTA
14924271 CATGACTTACTTGATTAATT
1 CATG-CTTACTTGATTAATT
14924291 TTGCTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (20 bp):
CATGCTTACTTGATTAATTA
Found at i:14926591 original size:15 final size:16
Alignment explanation
Indices: 14926533--14926592 Score: 52
Period size: 16 Copynumber: 3.8 Consensus size: 16
14926523 CTTTTGATGA
*
14926533 AATTTATTTTCTATGC
1 AATTTAATTTCTATGC
* * *
14926549 ATTTTAA-ATCTATGA
1 AATTTAATTTCTATGC
14926564 AATTTAAATTT-TCATGC
1 AATTT-AATTTCT-ATGC
14926581 AATTTAATTTCT
1 AATTTAATTTCT
14926593 TTTATTTACT
Statistics
Matches: 33, Mismatches: 7, Indels: 7
0.70 0.15 0.15
Matches are distributed among these distances:
15 10 0.30
16 13 0.39
17 10 0.30
ACGTcount: A:0.33, C:0.10, G:0.05, T:0.52
Consensus pattern (16 bp):
AATTTAATTTCTATGC
Found at i:14949869 original size:12 final size:12
Alignment explanation
Indices: 14949852--14949880 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
14949842 AGTGGACATA
14949852 TCTTAGGTTAGT
1 TCTTAGGTTAGT
14949864 TCTTAGGTTAGT
1 TCTTAGGTTAGT
14949876 T-TTAG
1 TCTTAG
14949881 TTTTGGGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.17, C:0.07, G:0.24, T:0.52
Consensus pattern (12 bp):
TCTTAGGTTAGT
Found at i:14951602 original size:42 final size:42
Alignment explanation
Indices: 14951538--14951626 Score: 142
Period size: 42 Copynumber: 2.1 Consensus size: 42
14951528 CAAGATACGA
* * *
14951538 TAGTTGAGGAGTTTAATGATGATGATAAGCCTAAGGGAAACC
1 TAGTTGAGGAGTTTAATAATGATGATAAACCTAAAGGAAACC
*
14951580 TAGTTGAGGAGTTTGATAATGATGATAAACCTAAAGGAAACC
1 TAGTTGAGGAGTTTAATAATGATGATAAACCTAAAGGAAACC
14951622 TAGTT
1 TAGTT
14951627 TAGAGGGGGG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.37, C:0.09, G:0.26, T:0.28
Consensus pattern (42 bp):
TAGTTGAGGAGTTTAATAATGATGATAAACCTAAAGGAAACC
Found at i:14957001 original size:20 final size:20
Alignment explanation
Indices: 14956976--14957023 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
14956966 CACATATGGA
*
14956976 AAAGCTTGTTATTTGCTAGT
1 AAAGCTTGTCATTTGCTAGT
14956996 AAAGCTTGTCATTTGCTAGT
1 AAAGCTTGTCATTTGCTAGT
14957016 AAAGCTTG
1 AAAGCTTG
14957024 AGTACAAGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (20 bp):
AAAGCTTGTCATTTGCTAGT
Found at i:14958219 original size:22 final size:22
Alignment explanation
Indices: 14958183--14958234 Score: 77
Period size: 22 Copynumber: 2.3 Consensus size: 22
14958173 ATGAGCTTTT
*
14958183 TTTCATTGGTCTTTGAAGTTGTA
1 TTTCA-TGGTCTTTGAAGTTATA
*
14958206 TTTCATGTTCTTTGAAGTTATA
1 TTTCATGGTCTTTGAAGTTATA
14958228 TTTCATG
1 TTTCATG
14958235 ATATAGGCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.19, C:0.10, G:0.17, T:0.54
Consensus pattern (22 bp):
TTTCATGGTCTTTGAAGTTATA
Found at i:14962091 original size:22 final size:21
Alignment explanation
Indices: 14962050--14962097 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
14962040 ACTTGTTACT
14962050 TGAATTTTGCTACTTCAATTC
1 TGAATTTTGCTACTTCAATTC
14962071 TGAATTTTGCTGTA-TTCAATTC
1 TGAATTTTGC--TACTTCAATTC
14962093 T-AATT
1 TGAATT
14962098 GAATTTTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 14 0.56
22 9 0.36
23 2 0.08
ACGTcount: A:0.25, C:0.15, G:0.10, T:0.50
Consensus pattern (21 bp):
TGAATTTTGCTACTTCAATTC
Found at i:14963326 original size:26 final size:28
Alignment explanation
Indices: 14963297--14963359 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 28
14963287 CTTACCTAGC
14963297 AACATGAAATTAAAA-GAAAACAAATT-
1 AACATGAAATTAAAATGAAAACAAATTA
* **
14963323 AACATG-CA-TAAAATGAAAATTAATTA
1 AACATGAAATTAAAATGAAAACAAATTA
14963349 AACATGAAATT
1 AACATGAAATT
14963360 CCTAAATGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
24 5 0.17
25 10 0.34
26 12 0.41
27 1 0.03
28 1 0.03
ACGTcount: A:0.60, C:0.08, G:0.08, T:0.24
Consensus pattern (28 bp):
AACATGAAATTAAAATGAAAACAAATTA
Found at i:14965038 original size:21 final size:21
Alignment explanation
Indices: 14965004--14965043 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
14964994 AATGTAATTG
** *
14965004 AAAGTAAATTTAATTAACAAC
1 AAAGTAAAGGTAATGAACAAC
14965025 AAAGTAAAGGTAATGAACA
1 AAAGTAAAGGTAATGAACA
14965044 GGTTAAAAGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.12, T:0.23
Consensus pattern (21 bp):
AAAGTAAAGGTAATGAACAAC
Found at i:14968207 original size:159 final size:159
Alignment explanation
Indices: 14967605--14969476 Score: 1449
Period size: 159 Copynumber: 11.8 Consensus size: 159
14967595 GAAAAACTAG
** * * * *
14967605 CTTTGAAACCAAACAAAATGAAAGTTAGAATTGCTTGTTTTGGTAAACAAAAGCGATAATATTAT
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTT-TTTTGGTAAACAAAAGCAACAATATCAT
* * * * * * *
14967670 GTATCCTAATGGTAGCAAAATATTTTGCTTGGTAC-ATTGTGAAAATAACTTATATTTTTACGAT
65 GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGAT
* * * *
14967734 AGAGAAAGTTTAAACGAGTTGAATGACCAA
130 GGAGGAAGTTTGAACGAGTTGAAGGACCAA
** * * * * * *
14967764 CTTTGAAAATAAGCAAAATGAATGGGAGACATGTTTTTTTATGGAAAACAAAAGCAACAATATAA
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATG-CTTTTT-TGGTAAACAAAAGCAACAATATCA
* * * * * * *
14967829 TATATCCCAGTGGTAACAAACTGTTTTGTTTAGTAC-TTTGTGAAAATAACTTAAACTTTTATGA
64 TGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGA
* ** * *
14967893 TAGACAAAGTTTGAACTAATTGAAGGACCAA
129 TGGAGGAAGTTTGAACGAGTTGAAGGACCAA
* * * * ** *
14967924 CTTTGAAAGCAAACAAAATGAAATGAAAAAATGCTTTTTTTGGTAAACAAAAGTGACAATATCTT
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATGC-TTTTTTGGTAAACAAAAGCAACAATATCAT
* * * ** * * * * * * * *
14967989 ATACCCCAATGGGAATTATCTGTTTTGGTTGGT--TTTTCATCTAAAA-AACATAGATTTTTATG
65 GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTT-GT-GAAAAGAACTTATACTTTTATG
** * *
14968051 ATGGACTAAGTTT-AACCA-TATGAAAGGATCAA
128 ATGGAGGAAGTTTGAACGAGT-TG-AAGGACCAA
* * * * *
14968083 TTTTGAAACGAAACAAAATGAATGGGAGAAATGCTTTTTGGGTAAACAAAAGCAGCAATATCATG
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTGGTAAACAAAAGCAACAATATCATG
* ** * *
14968148 TATCCCAATGGCAACAAACTATTTTGCTTTATACTTTTCTGAAAATAACTTATACTTTTATGATG
66 TATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGATG
* * **
14968213 AAGGAAGTTTGAACAAGTTGAAGGAATAA
131 GAGGAAGTTTGAACGAGTTGAAGGACCAA
* * * * ** *
14968242 CTTTGAAA-CAATCAAAACGAAAAAGGAGAAATGCTTTACTTAGG-AAATGAAAGCAATAATATC
1 CTTTGAAACCAAACAAAATG-AAAGGGAGAAATGCTTT--TTTGGTAAACAAAAGCAACAATATC
* * * * * * * *
14968305 ATGTATCCTAACTAG-AACTATCTATCTTACTTGATAC-TTTGTGAGAAGAACTTATACTTTTAT
63 ATGTATCCCAA-TGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTAT
*
14968368 GATGGAGGAAGTTTGAACAAGTTGAAGGACCAA
127 GATGGAGGAAGTTTGAACGAGTTGAAGGACCAA
* * * * * *
14968401 CTTTGAAACCAAACAAAATGCATGGCAGAAATGATTTTTTTGGAAAAAAAAAAGCAACAATAT-A
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATG-CTTTTTTGG-TAAACAAAAGCAACAATATCA
* ** *
14968465 GTGTATTCCAATGGTAACAAACTATTTTGCTTGGTAC-TTTGTGAAAA-AAAATATACTTTTACG
64 -TGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATG
* * *
14968528 ATGGAGGAAGTTTGAACAAGTTAAAGGATCAA
128 ATGGAGGAAGTTTGAACGAGTTGAAGGACCAA
* * * *
14968560 CTTTGATACAAAACAAAATGAAAGGGAGAAATACTTTTTTTGGAAAACAAAAGCAACAATATCAT
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATGC-TTTTTTGGTAAACAAAAGCAACAATATCAT
* * * * * * *
14968625 GTATCCTATTGGTAGCAAACTATGTTGCTTGGTAC-TTTGCGAGAAGAACTCATACTTTTATGAT
65 GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGAT
* *
14968689 GAAAGAAGTTTGAACGAGTTGAAGGACCAA
130 GGAGGAAGTTTGAACGAGTTGAAGGACCAA
* * ** * * *
14968719 -TTTTAAAGCCAAACAAAATGAAAGGGAGAATTGCCTTTTTTGGTAAATGAAATCAATAATATCT
1 CTTTGAAA-CCAAACAAAATGAAAGGGAGAAATG-CTTTTTTGGTAAACAAAAGCAACAATATCA
* * * * *
14968783 TGTATCCCAATAGTAACAAACTATTTTACTTGGTAC-TTTGTGAAAA-ACCTTATACTCTTA-CA
64 TGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGA
* * *
14968845 T-TAGAGATTGTTTGAATGAGTTGAAGGACCAA
129 TGGAG-GA-AGTTTGAACGAGTTGAAGGACCAA
* * * * * * ** * *
14968877 CTTTGGAACAAAACAAAATGAAAGAGAGAATTGTTTTTTTTTGGCAAATGAAATCAACAATAT-T
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATG--CTTTTTTGGTAAACAAAAGCAACAATATCA
* * ** * *
14968941 TGTATCCTAATAGTAGTAAACTATTTTGCTTGGTA-TTTTGTGAAAAAAAACTTATACTTTTA-C
64 TGTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTG-AAAAGAACTTATACTTTTATG
* *
14969004 ATTGGAGAAAGTTTGAACGAGTTGAAGGAGCAA
128 A-TGGAGGAAGTTTGAACGAGTTGAAGGACCAA
* * ** * ** * * *
14969037 CATTGAAACTAAACAAAATGAAAGAAAGAAATGCATTTTTTGATAAATGAAGGCAACAATACCTT
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATGC-TTTTTTGGTAAACAAAAGCAACAATATCAT
* * *** * * * * * *
14969102 GTATCACAATGGAAACTTTCTATTGTGCTTGCTTCTTCATGT--AAAGAACGTA-ATTTTTATGA
65 GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTT-TTGTGAAAAGAACTTATACTTTTATGA
* * * * *
14969164 TGAAGTATGTTT-AACCGA-ATGAAAGGACTAA
129 TGGAGGAAGTTTGAA-CGAGTTG-AAGGACCAA
* * * *
14969195 CTTTTAAACCAAACAAAATGAAAGTGAGAAAT--TATTTTTAGTAAACAAAAGCAACAATATTAT
1 CTTTGAAACCAAACAAAATGAAAGGGAGAAATGCT-TTTTTGGTAAACAAAAGCAACAATATCAT
** *
14969258 GTAT-CCAATGGTAACAAACTATTTAACTTGGTACTTTT-TGAAAAGAACTTATACTTTTAAGAT
65 GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGAT
* * * **
14969321 -GATGAAAATTTGAACAAGTTGAAGGATAAA
130 GGA-GGAAGTTTGAACGAGTTGAAGGACCAA
* * * *
14969351 CTTT-AAAGCTAAAC-AAATGAAAAGGAGAAGTGCTTTTTTGGTAAACAAAAGCAATAATATCAT
1 CTTTGAAA-CCAAACAAAATGAAAGGGAGAAATGCTTTTTTGGTAAACAAAAGCAACAATATCAT
* * * *
14969414 GTATCCCAATGGTAACAAATTATTTTGCTTTGTAGTTTT-TGAAAAAAACTTATACTTTTATGA
65 GTATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGA
14969477 AAAAGGAAAT
Statistics
Matches: 1362, Mismatches: 296, Indels: 112
0.77 0.17 0.06
Matches are distributed among these distances:
153 1 0.00
154 1 0.00
155 50 0.04
156 88 0.06
157 65 0.05
158 281 0.21
159 525 0.39
160 335 0.25
161 11 0.01
162 5 0.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.32
Consensus pattern (159 bp):
CTTTGAAACCAAACAAAATGAAAGGGAGAAATGCTTTTTTGGTAAACAAAAGCAACAATATCATG
TATCCCAATGGTAACAAACTATTTTGCTTGGTACTTTTGTGAAAAGAACTTATACTTTTATGATG
GAGGAAGTTTGAACGAGTTGAAGGACCAA
Found at i:14970683 original size:160 final size:158
Alignment explanation
Indices: 14970378--14970959 Score: 574
Period size: 160 Copynumber: 3.7 Consensus size: 158
14970368 CAAATTTAAT
** * *
14970378 AGAAAGTTTGAATGAGTTGAATGACAAACTTTAAAACCAAACAAAATGAATAAGAGAAA-G-TAT
1 AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAAAACCAAACAAAATGAAT-AGAGAAATGCT-T
* * * * *
14970441 TTTTTTTTATGTAAACAAAAGCGATGATATCGTGTA-CCTCAATGGTAGCAAACAAATTTGCTTG
64 TTTTTTTTA---AAACAAAAGCAATAATATCATGTATCC-CAATGGTAGCAAACTATTTTGCTTG
14970505 GTACTTTGTGAAAAGAACTTATACTTTTATGTTGG
125 GTACTTTGTG-AAAGAACTTATACTTTTATGTTGG
* * *** *
14970540 AGAAAGTTT-AAAAGAGCTGACTTACCAACTTTAAAACCACACAAAATGAATAGGAGAAATGCTT
1 AGAAAGTTTGAACA-AGTTGAAAGACCAACTTTAAAACCAAACAAAATGAATA-GAGAAATGCTT
* ** * * *
14970604 TTTTTTTTAAAACAAAGGCAACCATATCATGTATCCAAATGGTAACAAATTATTTTGCTTGGTAC
64 TTTTTTTTAAAACAAAAGCAATAATATCATGTATCCCAATGGTAGCAAACTATTTTGCTTGGTAC
***
14970669 TTTGTGACAAGAACTTATACTTTTACCATGG
129 TTTGTGA-AAGAACTTATACTTTTATGTTGG
* * * * *
14970700 TTG-AAGTTTGAACAAGTTGAAAGACCAACTTTAGAGCCAAACAAAATAAATCATAGAAATGCTT
1 -AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAAAACCAAACAAAATGAAT-AGAGAAATGCTT
* ** *
14970764 TTTGTGGT-AAACAAAAGCAATAATATCATGTATCCCAATGGTTGCAAACTATTTTGCTTGGTAC
64 TTTTTTTTAAAACAAAAGCAATAATATCATGTATCCCAATGGTAGCAAACTATTTTGCTTGGTAC
* * * *
14970828 TTTATGAAGAAAACTTATAATTTTATGTTAG
129 TTTGTGAA-AGAACTTATACTTTTATGTTGG
* * *
14970859 CGAAAGTTTGAACAAGTTAAAAGACCAACTTTGAAACCAAACAAAATGAATATGAG-AA----TT
1 AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAAAACCAAACAAAATGAATA-GAGAAATGCTTT
* *
14970919 TTTTTTTAAAACCAAAAGCAAAAATATCATTTATCCCAATG
65 TTTTTTTAAAA-CAAAAGCAATAATATCATGTATCCCAATG
14970960 ATAACTCTAT
Statistics
Matches: 346, Mismatches: 60, Indels: 34
0.79 0.14 0.08
Matches are distributed among these distances:
154 6 0.02
155 3 0.01
156 27 0.08
158 5 0.01
159 117 0.34
160 119 0.34
161 10 0.03
162 47 0.14
163 11 0.03
164 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (158 bp):
AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAAAACCAAACAAAATGAATAGAGAAATGCTTTT
TTTTTTAAAACAAAAGCAATAATATCATGTATCCCAATGGTAGCAAACTATTTTGCTTGGTACTT
TGTGAAAGAACTTATACTTTTATGTTGG
Found at i:14970843 original size:159 final size:156
Alignment explanation
Indices: 14970378--14970959 Score: 523
Period size: 159 Copynumber: 3.7 Consensus size: 156
14970368 CAAATTTAAT
** * * * * **
14970378 AGAAAGTTTGAATGAGTTGAATGACAAACTTTAAAACCAAACAAAATGAATAAGAGAAAGTATTT
1 AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAGAACCAAACAAAATGAAT-ATAGAAA-TGCTT
* * * * * *
14970443 TTTTTTATGTAAACAAAAGCGATGATATCGTGTA-CCTCAATGGTAGCAAACAAATTTGCTTGGT
64 TTTTGTA---AAACAAAAGCAATAATATCATGTATCC-CAATGGTAGCAAACTATTTTGCTTGGT
14970507 ACTTTGTGAAAAGAACTTATACTTTTATGTTGG
125 ACTTTGTGAAAA-AACTTATACTTTTATGTTGG
* * *** * * *
14970540 AGAAAGTTT-AAAAGAGCTGACTTACCAACTTTAAAACCACACAAAATGAATAGGAGAAATGCTT
1 AGAAAGTTTGAACA-AGTTGAAAGACCAACTTTAGAACCAAACAAAATGAATA-TAGAAATGC--
* * ** * * *
14970604 TTTTTTTTAAAACAAAGGCAACCATATCATGTATCCAAATGGTAACAAATTATTTTGCTTGGTAC
62 TTTTTTGTAAAACAAAAGCAATAATATCATGTATCCCAATGGTAGCAAACTATTTTGCTTGGTAC
* ***
14970669 TTTGTGACAAGAACTTATACTTTTACCATGG
127 TTTGTGA-AAAAACTTATACTTTTATGTTGG
* * *
14970700 TTG-AAGTTTGAACAAGTTGAAAGACCAACTTTAGAGCCAAACAAAATAAATCATAGAAATGCTT
1 -AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAGAACCAAACAAAATGAAT-ATAGAAATGCTT
*
14970764 TTTGTGGT-AAACAAAAGCAATAATATCATGTATCCCAATGGTTGCAAACTATTTTGCTTGGTAC
64 TTT-T-GTAAAACAAAAGCAATAATATCATGTATCCCAATGGTAGCAAACTATTTTGCTTGGTAC
* * *
14970828 TTTATGAAGAAAACTTATAATTTTATGTTAG
127 TTTGTGAA-AAAACTTATACTTTTATGTTGG
* *
14970859 CGAAAGTTTGAACAAGTTAAAAGACCAACTTT-GAAACCAAACAAAATGAATAT-GAGAAT--TT
1 AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAG-AACCAAACAAAATGAATATAGA-AATGCTT
* * *
14970920 TTTTTTAAAACCAAAAGCAAAAATATCATTTATCCCAATG
64 TTTTGTAAAA-CAAAAGCAATAATATCATGTATCCCAATG
14970960 ATAACTCTAT
Statistics
Matches: 347, Mismatches: 56, Indels: 40
0.78 0.13 0.09
Matches are distributed among these distances:
154 1 0.00
155 4 0.01
156 32 0.09
157 2 0.01
158 13 0.04
159 115 0.33
160 111 0.32
161 13 0.04
162 47 0.14
163 9 0.03
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (156 bp):
AGAAAGTTTGAACAAGTTGAAAGACCAACTTTAGAACCAAACAAAATGAATATAGAAATGCTTTT
TTGTAAAACAAAAGCAATAATATCATGTATCCCAATGGTAGCAAACTATTTTGCTTGGTACTTTG
TGAAAAAACTTATACTTTTATGTTGG
Found at i:14972574 original size:20 final size:20
Alignment explanation
Indices: 14972551--14972588 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14972541 AAAAAACAAT
14972551 AAAGT-GGTGAAAAGCAAACA
1 AAAGTAGGTG-AAAGCAAACA
14972571 AAAGTAGGTGAAAGCAAA
1 AAAGTAGGTGAAAGCAAA
14972589 GATTGGGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.55, C:0.08, G:0.26, T:0.11
Consensus pattern (20 bp):
AAAGTAGGTGAAAGCAAACA
Found at i:14974078 original size:21 final size:20
Alignment explanation
Indices: 14974041--14974088 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
14974031 TCTTGCATTT
* *
14974041 ATTTTCAATGGACTTTCTTA
1 ATTTTCAATGAAATTTCTTA
14974061 ATTTCTCAATGAAATTTC-TA
1 ATTT-TCAATGAAATTTCTTA
14974081 GATTTTCA
1 -ATTTTCA
14974089 CGATTTCTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.29, C:0.15, G:0.08, T:0.48
Consensus pattern (20 bp):
ATTTTCAATGAAATTTCTTA
Found at i:14979779 original size:17 final size:18
Alignment explanation
Indices: 14979745--14979779 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
14979735 TGTTATTAAA
*
14979745 TATTTTTACTTTTTTGTG
1 TATTTTTACTTTTATGTG
14979763 TATTTTTAC-TTTATGTG
1 TATTTTTACTTTTATGTG
14979780 AAACCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (18 bp):
TATTTTTACTTTTATGTG
Found at i:14984049 original size:18 final size:18
Alignment explanation
Indices: 14984023--14984065 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
14984013 ACATAGTTCG
* *
14984023 AATACAAAAACATGTTCAT
1 AATA-AAAAAAATGTACAT
14984042 AATAAAAAAAATGTACAT
1 AATAAAAAAAATGTACAT
*
14984060 ACTAAA
1 AATAAA
14984066 TGTTGATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.60, C:0.12, G:0.05, T:0.23
Consensus pattern (18 bp):
AATAAAAAAAATGTACAT
Found at i:14988400 original size:135 final size:139
Alignment explanation
Indices: 14988158--14988486 Score: 364
Period size: 135 Copynumber: 2.4 Consensus size: 139
14988148 TTAAAACATC
* * * * * * * * * * *
14988158 AAAAATCATGAAATATTATAAAATTGATATCTAAAAAATTTCGTGAAAATCTGA-CATCGAGAAG
1 AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATAAAAATATGAGC-TTGGGAAG
* * * *
14988222 GTCAAATTATGAAAATACCCTTATAACGGGTTTTTTGTAATTTCACA-TTTT-T-AG-ATGATTT
65 GTCAAATTATGAAAATAACATTATAACGGATATTTTGTAATTTCACATTTTTGTAAGCATGATTT
14988283 CAAATGCACT
130 CAAATGCACT
* *
14988293 AAAAATTATGAAATATTATGAAATTAAGATATGGAAAGTTTCATAAAAATATGAGCTTGGGAAGG
1 AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATAAAAATATGAGCTTGGGAAGG
* *
14988358 TCAAATTATGAAAATAACATTAT-ATGGATATTTTGATAATTTCACATTTTTTGGGATACAGCTG
66 TCAAATTATGAAAATAACATTATAACGGATATTTTG-TAATTTCACA-TTTTT--G-TA-AGC-A
14988422 TGATTTCAAATGCACT
124 TGATTTCAAATGCACT
*
14988438 AAAAATCATGAAATATTATGAAATTAAGATTTGAAAAGTTTCATAAAAA
1 AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATAAAAA
14988487 ATTATGAAAA
Statistics
Matches: 160, Mismatches: 22, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
134 9 0.06
135 81 0.51
136 1 0.01
137 4 0.03
141 1 0.01
143 2 0.01
145 62 0.39
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (139 bp):
AAAAATCATGAAATATTATGAAATTAAGATATGAAAAGTTTCATAAAAATATGAGCTTGGGAAGG
TCAAATTATGAAAATAACATTATAACGGATATTTTGTAATTTCACATTTTTGTAAGCATGATTTC
AAATGCACT
Found at i:14989061 original size:19 final size:19
Alignment explanation
Indices: 14989037--14989091 Score: 73
Period size: 19 Copynumber: 3.1 Consensus size: 19
14989027 AACAAAGGCT
14989037 TTGAAACTTTAAAAATGGC
1 TTGAAACTTTAAAAATGGC
14989056 TTGAAACTTT---AA-GGC
1 TTGAAACTTTAAAAATGGC
14989071 TTTGAAACTTTAAAAATGGC
1 -TTGAAACTTTAAAAATGGC
14989091 T
1 T
14989092 CCCCCCCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
15 3 0.10
16 12 0.39
19 13 0.42
20 3 0.10
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (19 bp):
TTGAAACTTTAAAAATGGC
Found at i:14989077 original size:16 final size:16
Alignment explanation
Indices: 14989031--14989083 Score: 63
Period size: 16 Copynumber: 3.1 Consensus size: 16
14989021 TCTCTAAACA
14989031 AAGGCTTTGAAACTTT
1 AAGGCTTTGAAACTTT
14989047 AAAAATGGC-TTGAAACTTT
1 ---AA-GGCTTTGAAACTTT
14989066 AAGGCTTTGAAACTTT
1 AAGGCTTTGAAACTTT
14989082 AA
1 AA
14989084 AAATGGCTCC
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
15 3 0.09
16 14 0.44
19 12 0.38
20 3 0.09
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (16 bp):
AAGGCTTTGAAACTTT
Found at i:14989813 original size:1 final size:1
Alignment explanation
Indices: 14989809--14989901 Score: 51
Period size: 1 Copynumber: 93.0 Consensus size: 1
14989799 ATTTTTAAAA
* * * ** * * * * * *
14989809 TTTTTTTTTTGTTTTGTTTTGTCATTTTTTTTGTTTGTTTTTGTTTTGTTTTATTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
14989874 TTGTTTTTGTTTTTGTTTTTTTCTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
14989902 AGATCTCGTT
Statistics
Matches: 63, Mismatches: 29, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (1 bp):
T
Found at i:14989855 original size:32 final size:31
Alignment explanation
Indices: 14989809--14989901 Score: 111
Period size: 32 Copynumber: 3.0 Consensus size: 31
14989799 ATTTTTAAAA
*
14989809 TTTTTTTTTTGTTTTGTTTTGTCATTTTTTTTG
1 TTTTGTTTTTGTTTTGTTTT-T-ATTTTTTTTG
14989842 -TTTGTTTTTGTTTTG-TTTTATTTTTTTTG
1 TTTTGTTTTTGTTTTGTTTTTATTTTTTTTG
*
14989871 TTTTTGTTTTTGTTTTTGTTTTT-TTCTTTTT
1 -TTTTGTTTTTG-TTTTGTTTTTATTTTTTTT
14989902 AGATCTCGTT
Statistics
Matches: 54, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
29 10 0.19
30 1 0.02
31 13 0.24
32 26 0.48
33 4 0.07
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (31 bp):
TTTTGTTTTTGTTTTGTTTTTATTTTTTTTG
Found at i:14989858 original size:37 final size:36
Alignment explanation
Indices: 14989809--14989892 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 36
14989799 ATTTTTAAAA
* *
14989809 TTTTTTTTTTGTTTTGTTTTGTCATTT-TTTTTG-TTTG
1 TTTTTGTTTTGTTTTATTTT-T--TTTGTTTTTGTTTTG
14989846 TTTTTGTTTTGTTTTATTTTTTTTGTTTTTGTTTTTG
1 TTTTTGTTTTGTTTTATTTTTTTTGTTTTTG-TTTTG
14989883 TTTTTGTTTT
1 TTTTTGTTTT
14989893 TTTCTTTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
34 3 0.07
35 6 0.14
36 1 0.02
37 32 0.76
ACGTcount: A:0.02, C:0.01, G:0.13, T:0.83
Consensus pattern (36 bp):
TTTTTGTTTTGTTTTATTTTTTTTGTTTTTGTTTTG
Found at i:14989881 original size:26 final size:24
Alignment explanation
Indices: 14989809--14989901 Score: 116
Period size: 26 Copynumber: 3.7 Consensus size: 24
14989799 ATTTTTAAAA
14989809 TTTTTTTTTTG-TTTTGTTTTGTCAT
1 TTTTTTTTTTGTTTTTGTTTTGT--T
14989834 TTTTTTTGTTTGTTTTTGTTTTGTT
1 TTTTTTT-TTTGTTTTTGTTTTGTT
14989859 TTATTTTTTTTGTTTTTGTTTTTGTT
1 TT-TTTTTTTTGTTTTTG-TTTTGTT
*
14989885 TTTGTTTTTTTCTTTTT
1 TTT-TTTTTTTGTTTTT
14989902 AGATCTCGTT
Statistics
Matches: 62, Mismatches: 1, Indels: 9
0.86 0.01 0.12
Matches are distributed among these distances:
25 21 0.34
26 30 0.48
27 11 0.18
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (24 bp):
TTTTTTTTTTGTTTTTGTTTTGTT
Found at i:14989901 original size:6 final size:6
Alignment explanation
Indices: 14989809--14989893 Score: 77
Period size: 6 Copynumber: 13.8 Consensus size: 6
14989799 ATTTTTAAAA
* *
14989809 TTTTT- TTTTTG -TTTTG TTTTGTCA TTTTTT TTGTTTG TTTTTG -TTTTG
1 TTTTTG TTTTTG TTTTTG TTTT-T-G TTTTTG TT-TTTG TTTTTG TTTTTG
*
14989857 TTTTATTT TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
1 -TTT-TTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
14989894 TTCTTTTTAG
Statistics
Matches: 67, Mismatches: 5, Indels: 15
0.77 0.06 0.17
Matches are distributed among these distances:
5 15 0.22
6 34 0.51
7 12 0.18
8 6 0.09
ACGTcount: A:0.02, C:0.01, G:0.13, T:0.84
Consensus pattern (6 bp):
TTTTTG
Found at i:15006626 original size:23 final size:24
Alignment explanation
Indices: 15006582--15006626 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
15006572 ATGTACCAAA
*
15006582 AAAAAGCAAAAAAGCAAAAAAAGT
1 AAAAAGCAAAAAAACAAAAAAAGT
15006606 AAAAA-CAAAAAAACAAAAAAA
1 AAAAAGCAAAAAAACAAAAAAA
15006627 ATGAGGAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 15 0.75
24 5 0.25
ACGTcount: A:0.82, C:0.09, G:0.07, T:0.02
Consensus pattern (24 bp):
AAAAAGCAAAAAAACAAAAAAAGT
Found at i:15006627 original size:9 final size:8
Alignment explanation
Indices: 15006580--15006626 Score: 51
Period size: 8 Copynumber: 5.9 Consensus size: 8
15006570 AGATGTACCA
15006580 AAAAAAAGC
1 AAAAAAA-C
*
15006589 AAAAAAGC
1 AAAAAAAC
15006597 AAAAAAA-
1 AAAAAAAC
**
15006604 GTAAAAAC
1 AAAAAAAC
15006612 AAAAAAAC
1 AAAAAAAC
15006620 AAAAAAA
1 AAAAAAA
15006627 ATGAGGAAGA
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
7 5 0.16
8 20 0.65
9 6 0.19
ACGTcount: A:0.83, C:0.09, G:0.06, T:0.02
Consensus pattern (8 bp):
AAAAAAAC
Found at i:15008325 original size:126 final size:127
Alignment explanation
Indices: 15008082--15008329 Score: 360
Period size: 126 Copynumber: 2.0 Consensus size: 127
15008072 GAATGATCTC
* *
15008082 ATTTTATTTTCCAAAATTTTCAAAGCCTCACTTGTGGGAGAGCATTTTATTTTTCAAAGTTTCAA
1 ATTTTATTTTCCAAAAGTTTCAAAGCCTCAATTGTGGGAGAGCATTTTATTTTTCAAAGTTTCAA
* * *
15008147 AGTCTTAGTTATGAGGGAGCATTTTAGTTTCAAAAGTTTCAAAGCCCTAGTTGTGGGGGAGT
66 AGCCTCAGTTATGAGGGAGCATTTTAGTTTCAAAAGTTCCAAAGCCCTAGTTGTGGGGGAGT
* * *
15008209 ATTTTATTTTTC-AAAGTTTCATAGCCTTAATTGTGAGGA-AGCATTTTA-TTTTCAAAAGTTTC
1 ATTTTATTTTCCAAAAGTTTCAAAGCCTCAATTGTG-GGAGAGCATTTTATTTTTC-AAAGTTTC
*
15008271 AAAGCCTCAGTTATGAGGGAGCATTTTATTTTCAAAAGTTCCAAAG-CCTCAGTTGTGGG
64 AAAGCCTCAGTTATGAGGGAGCATTTTAGTTTCAAAAGTTCCAAAGCCCT-AGTTGTGGG
15008330 AAAGCATTGT
Statistics
Matches: 109, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
125 8 0.07
126 87 0.80
127 14 0.13
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (127 bp):
ATTTTATTTTCCAAAAGTTTCAAAGCCTCAATTGTGGGAGAGCATTTTATTTTTCAAAGTTTCAA
AGCCTCAGTTATGAGGGAGCATTTTAGTTTCAAAAGTTCCAAAGCCCTAGTTGTGGGGGAGT
Found at i:15008337 original size:42 final size:42
Alignment explanation
Indices: 15008081--15008327 Score: 295
Period size: 42 Copynumber: 5.9 Consensus size: 42
15008071 AGAATGATCT
* *
15008081 CATTTTATTTTCCAAAATTTTCAAAGCCTCACTTGTG-GGAGAG
1 CATTTTATTTT-CAAAAGTTTCAAAGCCTCAGTTGTGAGG-GAG
* * *
15008124 CATTTTATTTTTC-AAAGTTTCAAAGTCTTAGTTATGAGGGAG
1 CATTTTA-TTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGGGAG
* *
15008166 CATTTTAGTTTCAAAAGTTTCAAAGCC-CTAGTTGTGGGGGAG
1 CATTTTATTTTCAAAAGTTTCAAAGCCTC-AGTTGTGAGGGAG
* * * * *
15008208 TATTTTATTTTTC-AAAGTTTCATAGCCTTAATTGTGAGGAAG
1 CATTTTA-TTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGGGAG
*
15008250 CATTTTATTTTCAAAAGTTTCAAAGCCTCAGTTATGAGGGAG
1 CATTTTATTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGGGAG
*
15008292 CATTTTATTTTCAAAAGTTCCAAAGCCTCAGTTGTG
1 CATTTTATTTTCAAAAGTTTCAAAGCCTCAGTTGTG
15008328 GGAAAGCATT
Statistics
Matches: 172, Mismatches: 25, Indels: 15
0.81 0.12 0.07
Matches are distributed among these distances:
41 9 0.05
42 145 0.84
43 14 0.08
44 4 0.02
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (42 bp):
CATTTTATTTTCAAAAGTTTCAAAGCCTCAGTTGTGAGGGAG
Done.