Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 81 of 133
Found at i:15983168 original size:18 final size:18
Alignment explanation
Indices: 15983134--15983168 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15983124 ACCATTAAAT
*
15983134 TTAATTTTAAATGCATAA
1 TTAATTTTAAATACATAA
*
15983152 TTAATTTTGAATACATA
1 TTAATTTTAAATACATA
15983169 TCAATTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.46
Consensus pattern (18 bp):
TTAATTTTAAATACATAA
Found at i:15984532 original size:13 final size:14
Alignment explanation
Indices: 15984514--15984548 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
15984504 CATTTACACC
*
15984514 AAAAAAGA-TAATA
1 AAAAAAGATTAAAA
15984527 AAAAAAGATTAAAA
1 AAAAAAGATTAAAA
15984541 AAAAAAGA
1 AAAAAAGA
15984549 GGAAGAAAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (14 bp):
AAAAAAGATTAAAA
Found at i:15987529 original size:2 final size:2
Alignment explanation
Indices: 15987516--15987545 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15987506 AAGGAGAAAC
*
15987516 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15987546 GTATGTATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:15990266 original size:17 final size:17
Alignment explanation
Indices: 15990225--15990272 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
15990215 GATATACCAA
*
15990225 AAATAAATAATTT-TTG
1 AAATAAAAAATTTATTG
* *
15990241 AAA-ATAAAATTTATTT
1 AAATAAAAAATTTATTG
15990257 AAATAAAAAATTTATT
1 AAATAAAAAATTTATT
15990273 CTCAAAATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 7 0.27
16 8 0.31
17 11 0.42
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (17 bp):
AAATAAAAAATTTATTG
Found at i:15990386 original size:15 final size:14
Alignment explanation
Indices: 15990332--15990388 Score: 50
Period size: 13 Copynumber: 4.2 Consensus size: 14
15990322 ATTATCTTTG
*
15990332 ATTTGTTATTATTA
1 ATTTTTTATTATTA
*
15990346 ATTTTAT-TTA-TA
1 ATTTTTTATTATTA
15990358 ATATTTTTA-T-TTA
1 AT-TTTTTATTATTA
15990371 ATCTTTTTATTATTA
1 AT-TTTTTATTATTA
15990386 ATT
1 ATT
15990389 CAAATAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
12 4 0.12
13 18 0.53
14 7 0.21
15 5 0.15
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (14 bp):
ATTTTTTATTATTA
Found at i:15999235 original size:28 final size:27
Alignment explanation
Indices: 15999202--15999278 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 27
15999192 ACAAATCTTG
15999202 ATAAAATATTTAATGTAATATTTAAATT
1 ATAAAATATTTAAT-TAATATTTAAATT
*
15999230 TTAAAA-ACTTTTAATATAATATTTAAATT
1 ATAAAATA--TTTAAT-TAATATTTAAATT
15999259 ATAAACATA-TTAATTAATAT
1 ATAAA-ATATTTAATTAATAT
15999279 AATATTTAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
27 7 0.17
28 10 0.24
29 23 0.55
30 1 0.02
31 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (27 bp):
ATAAAATATTTAATTAATATTTAAATT
Found at i:15999281 original size:32 final size:29
Alignment explanation
Indices: 15999210--15999288 Score: 97
Period size: 29 Copynumber: 2.6 Consensus size: 29
15999200 TGATAAAATA
* *
15999210 TTTAATGTAATATTTAAATTTTAAAAACT
1 TTTAATATAATATTTAAATTATAAAAACT
15999239 TTTAATATAATATTTAAATTATAAACATA-T
1 TTTAATATAATATTTAAATTATAAA-A-ACT
15999269 TAATTAATATAATATTTAAA
1 T--TTAATATAATATTTAAA
15999289 AAATTATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
29 23 0.52
30 3 0.07
31 1 0.02
32 17 0.39
ACGTcount: A:0.49, C:0.03, G:0.01, T:0.47
Consensus pattern (29 bp):
TTTAATATAATATTTAAATTATAAAAACT
Found at i:15999287 original size:16 final size:16
Alignment explanation
Indices: 15999240--15999287 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
15999230 TTAAAAACTT
15999240 TTAATATAATATTTAAA
1 TTAATATAATATTT-AA
*
15999257 TT-ATA-AACATATTAA
1 TTAATATAATAT-TTAA
15999272 TTAATATAATATTTAA
1 TTAATATAATATTTAA
15999288 AAAATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 7
0.74 0.06 0.20
Matches are distributed among these distances:
15 8 0.31
16 12 0.46
17 6 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
TTAATATAATATTTAA
Found at i:15999722 original size:12 final size:12
Alignment explanation
Indices: 15999707--15999732 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15999697 GTCTTTTTTG
15999707 ATAAAATAAAAA
1 ATAAAATAAAAA
15999719 ATAAAATAAAAA
1 ATAAAATAAAAA
15999731 AT
1 AT
15999733 TTAAAACTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:16001665 original size:17 final size:17
Alignment explanation
Indices: 16001643--16001705 Score: 65
Period size: 17 Copynumber: 3.5 Consensus size: 17
16001633 GATTCAGTTT
16001643 ATTAATTTTTTTATTTA
1 ATTAATTTTTTTATTTA
*
16001660 ATTAATTTTTAT-TTTA
1 ATTAATTTTTTTATTTA
16001676 ATATAATTTTTAATATATTTA
1 AT-TAATTTTT--T-TATTTA
16001697 ATTAGATTT
1 ATTA-ATTT
16001706 GAATATAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
16 6 0.16
17 19 0.50
20 3 0.08
21 10 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTAATTTTTTTATTTA
Found at i:16001668 original size:16 final size:17
Alignment explanation
Indices: 16001643--16001705 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 17
16001633 GATTCAGTTT
16001643 ATTAATTTTTT-TATTTA
1 ATTAATTTTTTAT-TTTA
16001660 ATTAA-TTTTTATTTTA
1 ATTAATTTTTTATTTTA
16001676 ATATAATTTTTAATATATTTA
1 AT-TAATTTTT--TAT-TTTA
16001697 ATTAGATTT
1 ATTA-ATTT
16001706 GAATATAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
16 11 0.28
17 9 0.23
18 4 0.10
20 5 0.13
21 10 0.26
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTAATTTTTTATTTTA
Found at i:16001821 original size:23 final size:26
Alignment explanation
Indices: 16001795--16001850 Score: 64
Period size: 28 Copynumber: 2.2 Consensus size: 26
16001785 TTTTTCATTT
*
16001795 CTTAAT-TAGAAATA-AA-ATTCAAA
1 CTTAATATAAAAATATAATATTCAAA
16001818 CTTAATATAAAAATATTTAATATTCAAA
1 CTTAATATAAAAATA--TAATATTCAAA
16001846 CTTAA
1 CTTAA
16001851 ATTGCATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 6 0.22
24 7 0.26
27 2 0.07
28 12 0.44
ACGTcount: A:0.54, C:0.09, G:0.02, T:0.36
Consensus pattern (26 bp):
CTTAATATAAAAATATAATATTCAAA
Found at i:16002918 original size:18 final size:20
Alignment explanation
Indices: 16002887--16002924 Score: 53
Period size: 18 Copynumber: 2.0 Consensus size: 20
16002877 TTTTATTTTT
16002887 TTAATAAAATAATAAGTTTA
1 TTAATAAAATAATAAGTTTA
*
16002907 TTAA-AAAA-AATAATTTTA
1 TTAATAAAATAATAAGTTTA
16002925 GTCTACGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 9 0.53
19 4 0.24
20 4 0.24
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (20 bp):
TTAATAAAATAATAAGTTTA
Found at i:16003608 original size:24 final size:25
Alignment explanation
Indices: 16003581--16003641 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 25
16003571 TTCTTTATTT
16003581 AATTTTATT-ATTTTTAA-AAAATGA
1 AATTTTATTAATTTTTAATAAAAT-A
*
16003605 AATTATATTAAAATTTTTAATAAAATA
1 AATTTTATT--AATTTTTAATAAAATA
16003632 AATTTT-TTAA
1 AATTTTATTAA
16003642 ATATCTCATC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
24 10 0.32
26 2 0.06
27 14 0.45
28 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (25 bp):
AATTTTATTAATTTTTAATAAAATA
Found at i:16003792 original size:14 final size:13
Alignment explanation
Indices: 16003770--16003822 Score: 52
Period size: 13 Copynumber: 3.9 Consensus size: 13
16003760 TACATAGGTT
*
16003770 TTTAAGGTTTCAC
1 TTTAGGGTTTCAC
* *
16003783 ATTTAGGGTTTTGAT
1 -TTTAGGG-TTTCAC
*
16003798 TTTAGAGTTTCAC
1 TTTAGGGTTTCAC
16003811 TTTAGGGTTTCA
1 TTTAGGGTTTCA
16003823 TTGAAAGTCT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
13 15 0.48
14 12 0.39
15 4 0.13
ACGTcount: A:0.21, C:0.09, G:0.21, T:0.49
Consensus pattern (13 bp):
TTTAGGGTTTCAC
Found at i:16004426 original size:20 final size:21
Alignment explanation
Indices: 16004385--16004428 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
16004375 ATAATTTTTA
* *
16004385 TTTTTGTTTTTTTTTTGCTCT
1 TTTTTATTTTTTTTTAGCTCT
16004406 TTTTTATTTTTTTTTAG-TCT
1 TTTTTATTTTTTTTTAGCTCT
16004426 TTT
1 TTT
16004429 CTGTCACTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.05, C:0.07, G:0.07, T:0.82
Consensus pattern (21 bp):
TTTTTATTTTTTTTTAGCTCT
Found at i:16006055 original size:21 final size:21
Alignment explanation
Indices: 16006031--16006081 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
16006021 ACCTTTTTCT
16006031 ATCTTTAAAGAATACATATCC
1 ATCTTTAAAGAATACATATCC
*
16006052 ATCTTTAAAGAATACATGTCC
1 ATCTTTAAAGAATACATATCC
*
16006073 ATATTTAAA
1 ATCTTTAAA
16006082 CATAACTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (21 bp):
ATCTTTAAAGAATACATATCC
Found at i:16007035 original size:17 final size:17
Alignment explanation
Indices: 16007013--16007052 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
16007003 TTGTTTTCAG
16007013 TTTCTTTACCTATTTTT
1 TTTCTTTACCTATTTTT
**
16007030 TTTCTTTTTCTATTTTT
1 TTTCTTTACCTATTTTT
16007047 TTTCTT
1 TTTCTT
16007053 GCCTAATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTCTTTACCTATTTTT
Found at i:16007672 original size:8 final size:8
Alignment explanation
Indices: 16007659--16007690 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
16007649 TATATCTTTA
16007659 TTTTTATT
1 TTTTTATT
16007667 TTTTTA--
1 TTTTTATT
16007673 TTTTTATT
1 TTTTTATT
16007681 TTTTTATT
1 TTTTTATT
16007689 TT
1 TT
16007691 CATTATATAC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
6 6 0.27
8 16 0.73
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTTATT
Found at i:16007674 original size:14 final size:14
Alignment explanation
Indices: 16007636--16007690 Score: 74
Period size: 14 Copynumber: 3.9 Consensus size: 14
16007626 GGCTAAGCTT
*
16007636 TTTTTTTATTATATA
1 TTTTTTTATT-TTTA
* *
16007651 TATCTTTATTTTTA
1 TTTTTTTATTTTTA
16007665 TTTTTTTATTTTTA
1 TTTTTTTATTTTTA
16007679 TTTTTTTATTTT
1 TTTTTTTATTTT
16007691 CATTATATAC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
14 27 0.77
15 8 0.23
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (14 bp):
TTTTTTTATTTTTA
Found at i:16007745 original size:30 final size:29
Alignment explanation
Indices: 16007673--16007745 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 29
16007663 TATTTTTTTA
*
16007673 TTTTTATTTTTTTATTTTCATTATATACTT
1 TTTTTA-TTTTTTAATTTCATTATATACTT
**
16007703 TTAATATATTTTTACATTT-ATTATATACATT
1 TTTTTAT-TTTTTA-ATTTCATTATATAC-TT
16007734 TTTTTATTTTTT
1 TTTTTATTTTTT
16007746 TGATATTTAA
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 1 0.03
30 24 0.69
31 10 0.29
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (29 bp):
TTTTTATTTTTTAATTTCATTATATACTT
Found at i:16008110 original size:20 final size:19
Alignment explanation
Indices: 16008083--16008140 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
16008073 AAGGTAATCA
16008083 TTTTTTGTTGTTGTTGTTT
1 TTTTTTGTTGTTGTTGTTT
*
16008102 TTCTTTTGTTATGTT-ATGTTT
1 TT-TTTTG-T-TGTTGTTGTTT
*
16008123 TTTTTTGTT-TTGTCGTTT
1 TTTTTTGTTGTTGTTGTTT
16008141 GGTTTTTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
17 2 0.06
18 5 0.16
19 3 0.09
20 10 0.31
21 8 0.25
22 4 0.12
ACGTcount: A:0.03, C:0.03, G:0.17, T:0.76
Consensus pattern (19 bp):
TTTTTTGTTGTTGTTGTTT
Found at i:16008337 original size:69 final size:70
Alignment explanation
Indices: 16008264--16008702 Score: 261
Period size: 70 Copynumber: 6.3 Consensus size: 70
16008254 GACAAAATCA
* * * *
16008264 CAAGTCAAAAAATAAAGATGACT-AGACGAAATCGTAAGTTAAAAAACAAATATGATTGGGATGA
1 CAAGTCAAAAAATAAAGATGACTGAGACGAAACCATAAGTCAAAAAATAAATATGATTGGGATGA
*
16008328 AGCTG
66 AGTTG
* * * * * *
16008333 CAAGT-AAAGTAATAAAGATGACTGGGATGAAACCATAAGTCAGAAAATAAAGATGATTAGGATG
1 CAAGTCAAA-AAATAAAGATGACTGAGACGAAACCATAAGTCAAAAAATAAATATGATTGGGATG
* *
16008397 AAATCG
65 AAGTTG
* * * * * *
16008403 CAAGTTC-AAAAATAAAGATGATTGAGA-TAAAGCCACAAGTTAAAAAA-AAATATAACTGGGAT
1 CAAG-TCAAAAAATAAAGATGACTGAGACGAAA-CCATAAGTCAAAAAATAAATATGATTGGGAT
*
16008465 AAAGTTG
64 GAAGTTG
** * * * * *
16008472 CAAGTCAAGGAATAAAAATGACTGAGACG-AACCGTAAGTCAGAAAATAAAAATGATTGAG-TAG
1 CAAGTCAAAAAATAAAGATGACTGAGACGAAACCATAAGTCAAAAAATAAATATGATTGGGAT-G
16008535 AAGTTG
65 AAGTTG
* * * * * * * * * *
16008541 TAAGCCAAGAAATAAAGATTACT-AAAGTGAAGCCACAAGTCAAGAAATAAAGATGACTT-GGAT
1 CAAGTCAAAAAATAAAGATGACTGAGA-CGAAACCATAAGTCAAAAAATAAATATGA-TTGGGAT
* *
16008604 GAAATGG
64 GAAGTTG
* * * * * * *
16008611 CAAGTTAGAAAATAAAGGTAACT-AGGATGAAACTC-TAAGTCAAAGAATAAAGATGATTGGGAT
1 CAAGTCAAAAAATAAAGATGACTGA-GACGAAAC-CATAAGTCAAAAAATAAATATGATTGGGAT
* **
16008674 CAAGTCA
64 GAAGTTG
* * *
16008681 TAAGTTAGAAAATAAAGATGAC
1 CAAGTCAAAAAATAAAGATGAC
16008703 CAGGATGAAG
Statistics
Matches: 278, Mismatches: 76, Indels: 31
0.72 0.20 0.08
Matches are distributed among these distances:
68 19 0.07
69 94 0.34
70 157 0.56
71 8 0.03
ACGTcount: A:0.49, C:0.10, G:0.21, T:0.20
Consensus pattern (70 bp):
CAAGTCAAAAAATAAAGATGACTGAGACGAAACCATAAGTCAAAAAATAAATATGATTGGGATGA
AGTTG
Found at i:16008347 original size:104 final size:105
Alignment explanation
Indices: 16008239--16008435 Score: 252
Period size: 104 Copynumber: 1.9 Consensus size: 105
16008229 CAAGTCGAGG
** * *
16008239 AATAAAGATGACTTTGACAAAATCACAAGTCAAAAAATAAAGATGACTA-GACGAAATCGTAAGT
1 AATAAAGATGACTGGGACAAAACCACAAGTCAAAAAATAAAGATGACTAGGACGAAATCGCAAGT
* * *
16008303 TAAAAAACAAATATGATTGGGATGAAGCTGCAAGTAAAGT
66 TAAAAAACAAAGATGATTGAGATAAAGCTGCAAGTAAAGT
** * * * *
16008343 AATAAAGATGACTGGGATGAAACCATAAGTCAGAAAATAAAGATGATTAGGATGAAATCGCAAGT
1 AATAAAGATGACTGGGACAAAACCACAAGTCAAAAAATAAAGATGACTAGGACGAAATCGCAAGT
* *
16008408 TCAAAAATAAAGATGATTGAGATAAAGC
66 TAAAAAACAAAGATGATTGAGATAAAGC
16008436 CACAAGTTAA
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
104 41 0.53
105 36 0.47
ACGTcount: A:0.50, C:0.10, G:0.20, T:0.21
Consensus pattern (105 bp):
AATAAAGATGACTGGGACAAAACCACAAGTCAAAAAATAAAGATGACTAGGACGAAATCGCAAGT
TAAAAAACAAAGATGATTGAGATAAAGCTGCAAGTAAAGT
Found at i:16008382 original size:35 final size:34
Alignment explanation
Indices: 16008343--16008860 Score: 163
Period size: 35 Copynumber: 14.9 Consensus size: 34
16008333 CAAGTAAAGT
16008343 AATAAAGATGACTGGGATGAAACCATAAGTCAGAA
1 AATAAAGATGACTGGGATGAAACCATAAGTCA-AA
* * * **
16008378 AATAAAGATGATTAGGATGAAATCGCAAGTTCAAA
1 AATAAAGATGACTGGGATGAAACCATAAG-TCAAA
* * * *
16008413 AATAAAGATGATTGAGAT-AAAGCCACAAGTTAAA
1 AATAAAGATGACTGGGATGAAA-CCATAAGTCAAA
* * * ** *
16008447 AAAAAATATAACTGGGAT-AAA-GTTGCAAGTCAAGG
1 AATAAAGATGACTGGGATGAAACCAT--AAGTCAA-A
* * * *
16008482 AATAAAAATGACTGAGACG-AACCGTAAGTCAGAA
1 AATAAAGATGACTGGGATGAAACCATAAGTCA-AA
* * * **** *
16008516 AATAAAAATGATTGAG-TAGAAGTTGTAAGCCAAGA
1 AATAAAGATGACTGGGAT-GAAACCATAAGTCAA-A
* ** * *
16008551 AATAAAGATTACT-AAAGTGAAGCCACAAGTCAAGA
1 AATAAAGATGACTGGGA-TGAAACCATAAGTCAA-A
* **** *
16008586 AATAAAGATGACTTGGATGAAATGGCAAGTTAGAA
1 AATAAAGATGACTGGGATGAAACCATAAGTCA-AA
* * *
16008621 AATAAAGGTAACTAGGATGAAACTC-TAAGTCAAA
1 AATAAAGATGACTGGGATGAAAC-CATAAGTCAAA
* * ** *
16008655 GAATAAAGATGATTGGGATCAAGTCATAAGTTAGAA
1 -AATAAAGATGACTGGGATGAAACCATAAGTCA-AA
** * ***
16008691 AATAAAGATGACCAGGATGAAGCTGCAAGTCAAAA
1 AATAAAGATGACTGGGATGAAACCATAAGTC-AAA
* *** * *
16008726 AATAAAAATGACTAAAATGAAACCACAAGTTAGAA
1 AATAAAGATGACTGGGATGAAACCATAAGTCA-AA
* * *
16008761 AATAAAGATGA-TCGAGATGAAGCCATAAGTTAGAA
1 AATAAAGATGACT-GGGATGAAACCATAAGTCA-AA
* * ** * * *
16008796 AATAAAAATGACTTGTTTAAAATCGTAAGTCAAA
1 AATAAAGATGACTGGGATGAAACCATAAGTCAAA
* *
16008830 GAATAAAGATGATTGAGATGAAACC-TAAGTC
1 -AATAAAGATGACTGGGATGAAACCATAAGTC
16008861 TTGGAATAAA
Statistics
Matches: 353, Mismatches: 106, Indels: 49
0.69 0.21 0.10
Matches are distributed among these distances:
34 66 0.19
35 276 0.78
36 11 0.03
ACGTcount: A:0.49, C:0.10, G:0.20, T:0.20
Consensus pattern (34 bp):
AATAAAGATGACTGGGATGAAACCATAAGTCAAA
Found at i:16008420 original size:139 final size:138
Alignment explanation
Indices: 16008258--16008528 Score: 332
Period size: 139 Copynumber: 2.0 Consensus size: 138
16008248 GACTTTGACA
* ** * *
16008258 AAATCACAAGTCAAAAAATAAAGATGACT-AGACGAAA-TCGTAAGTTAAAAAACAAATATGATT
1 AAATCACAAGTCAAAAAATAAAGATGACTGAGA-GAAAGCCACAAGTTAAAAAA-AAATATAACT
* * * * * *
16008321 GGGATGAAGCTGCAAGTAAAGTAATAAAGATGACTGGGATGAAACCATAAGTCAGAAAATAAAGA
64 GGGATAAAGCTGCAAGTAAAGGAATAAAAATGACTGAGACG-AACCATAAGTCAGAAAATAAAAA
16008386 TGATTAGGATG
128 TGATTAGGATG
* * *
16008397 AAATCGCAAGTTC-AAAAATAAAGATGATTGAGATAAAGCCACAAGTTAAAAAAAAATATAACTG
1 AAATCACAAG-TCAAAAAATAAAGATGACTGAGAGAAAGCCACAAGTTAAAAAAAAATATAACTG
* * *
16008461 GGATAAAGTTGCAAGTCAAGGAATAAAAATGACTGAGACGAACCGTAAGTCAGAAAATAAAAATG
65 GGATAAAGCTGCAAGTAAAGGAATAAAAATGACTGAGACGAACCATAAGTCAGAAAATAAAAATG
16008526 ATT
130 ATT
16008529 GAGTAGAAGT
Statistics
Matches: 112, Mismatches: 17, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
138 26 0.23
139 69 0.62
140 17 0.15
ACGTcount: A:0.51, C:0.10, G:0.20, T:0.20
Consensus pattern (138 bp):
AAATCACAAGTCAAAAAATAAAGATGACTGAGAGAAAGCCACAAGTTAAAAAAAAATATAACTGG
GATAAAGCTGCAAGTAAAGGAATAAAAATGACTGAGACGAACCATAAGTCAGAAAATAAAAATGA
TTAGGATG
Found at i:16008694 original size:105 final size:105
Alignment explanation
Indices: 16008585--16008810 Score: 251
Period size: 105 Copynumber: 2.2 Consensus size: 105
16008575 ACAAGTCAAG
* * ** ** *
16008585 AAATAAAGATGACTTGGATGAA-ATGGCAAGTTAGAAAATAAAGGTAACTAGGATGAAACTC-TA
1 AAATAAAGATGACTTGGATGAAGAT-GCAAGTCAAAAAATAAAAATAACTAAAATGAAAC-CACA
* * *
16008648 AGTCA-AAGAATAAAGATGATTGGGATCAAGTCATAAGTTAGA
64 AGTCAGAA-AATAAAGATGATCGAGATCAAGCCATAAGTTAGA
** * *
16008690 AAATAAAGATGACCAGGATGAAGCTGCAAGTCAAAAAATAAAAATGACTAAAATGAAACCACAAG
1 AAATAAAGATGACTTGGATGAAGATGCAAGTCAAAAAATAAAAATAACTAAAATGAAACCACAAG
* *
16008755 TTAGAAAATAAAGATGATCGAGATGAAGCCATAAGTTAGA
66 TCAGAAAATAAAGATGATCGAGATCAAGCCATAAGTTAGA
*
16008795 AAATAAAAATGACTTG
1 AAATAAAGATGACTTG
16008811 TTTAAAATCG
Statistics
Matches: 99, Mismatches: 19, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
104 1 0.01
105 95 0.96
106 3 0.03
ACGTcount: A:0.50, C:0.09, G:0.20, T:0.20
Consensus pattern (105 bp):
AAATAAAGATGACTTGGATGAAGATGCAAGTCAAAAAATAAAAATAACTAAAATGAAACCACAAG
TCAGAAAATAAAGATGATCGAGATCAAGCCATAAGTTAGA
Found at i:16008756 original size:70 final size:69
Alignment explanation
Indices: 16008611--16008808 Score: 184
Period size: 70 Copynumber: 2.8 Consensus size: 69
16008601 GATGAAATGG
* * * * * * * ***
16008611 CAAGTTAGAAAATAAAGGTAACTAGGATGAAACTCTAAGTCAAAGAATAAAGATGATTGGGATCA
1 CAAGTTAGAAAATAAAGATGACCAGGATGAAGCTC-AAGTCAAAAAATAAAAATGACTAAAATCA
**
16008676 AGTCA
65 AACCA
* *
16008681 TAAGTTAGAAAATAAAGATGACCAGGATGAAGCTGCAAGTCAAAAAATAAAAATGACTAAAATGA
1 CAAGTTAGAAAATAAAGATGACCAGGATGAAGCT-CAAGTCAAAAAATAAAAATGACTAAAATCA
16008746 AACCA
65 AACCA
* * *
16008751 CAAGTTAGAAAATAAAGATGATC-GAGATGAAGC-CATAAGTTAGAAAATAAAAATGACT
1 CAAGTTAGAAAATAAAGATGACCAG-GATGAAGCTC--AAGTCAAAAAATAAAAATGACT
16008809 TGTTTAAAAT
Statistics
Matches: 106, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
68 1 0.01
69 1 0.01
70 103 0.97
71 1 0.01
ACGTcount: A:0.51, C:0.10, G:0.19, T:0.20
Consensus pattern (69 bp):
CAAGTTAGAAAATAAAGATGACCAGGATGAAGCTCAAGTCAAAAAATAAAAATGACTAAAATCAA
ACCA
Found at i:16009096 original size:35 final size:35
Alignment explanation
Indices: 16009001--16009096 Score: 86
Period size: 35 Copynumber: 2.7 Consensus size: 35
16008991 AGATGATTAA
* *
16009001 GATAAAATCACAA-ATCAAAAAATAAAGATAACTGG
1 GATAAAACCACAAGTTC-AAAAATAAAGATAACTGG
* ** **
16009036 GATAAAACCATAAGTTTTATGATAAAGATAACTGG
1 GATAAAACCACAAGTTCAAAAATAAAGATAACTGG
***
16009071 GATAAAATTGCAAGTTCAAAAATAAA
1 GATAAAACCACAAGTTCAAAAATAAA
16009097 ATTAAATTGA
Statistics
Matches: 45, Mismatches: 15, Indels: 2
0.73 0.24 0.03
Matches are distributed among these distances:
35 44 0.98
36 1 0.02
ACGTcount: A:0.54, C:0.09, G:0.14, T:0.23
Consensus pattern (35 bp):
GATAAAACCACAAGTTCAAAAATAAAGATAACTGG
Found at i:16009261 original size:34 final size:35
Alignment explanation
Indices: 16009207--16009273 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
16009197 AAAGTTGATC
* *
16009207 GGGATAAAGTCACGAGTCAAAAAACAAAGATGACT
1 GGGACAAAGTCACGAGTCAAAAAACAAAAATGACT
* *
16009242 GGGACAAAGTCA-TAGTCAAAAAATAAAAATGA
1 GGGACAAAGTCACGAGTCAAAAAACAAAAATGA
16009274 TCGAGATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.52, C:0.12, G:0.21, T:0.15
Consensus pattern (35 bp):
GGGACAAAGTCACGAGTCAAAAAACAAAAATGACT
Found at i:16009289 original size:34 final size:34
Alignment explanation
Indices: 16009202--16009364 Score: 87
Period size: 34 Copynumber: 4.7 Consensus size: 34
16009192 GGAATAAAGT
* * * * *
16009202 TGATCGGGATAAAGTCACGAGTCAAAAAACAAAGA
1 TGATCGAGATAAAATCA-TAGTCAAAAAATAAAAA
* * *
16009237 TGA-CTGGGACAAAGTCATAGTCAAAAAATAAAAA
1 TGATC-GAGATAAAATCATAGTCAAAAAATAAAAA
*
16009271 TGATCGAGATAAAATCATAAGT-TAAAAATAAAAA
1 TGATCGAGATAAAATCAT-AGTCAAAAAATAAAAA
* * ** * * ** *
16009305 TAATTGAGACGAAATCAAAAGTTAAGGAATAAAGA
1 TGATCGAGATAAAATC-ATAGTCAAAAAATAAAAA
* *
16009340 TGATCGAGATGAAACCATAAGTCAA
1 TGATCGAGATAAAATCAT-AGTCAA
16009365 GGAATAAAGA
Statistics
Matches: 99, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
34 55 0.56
35 44 0.44
ACGTcount: A:0.52, C:0.10, G:0.18, T:0.19
Consensus pattern (34 bp):
TGATCGAGATAAAATCATAGTCAAAAAATAAAAA
Found at i:16009424 original size:35 final size:35
Alignment explanation
Indices: 16009263--16009424 Score: 150
Period size: 35 Copynumber: 4.7 Consensus size: 35
16009253 ATAGTCAAAA
* * * *
16009263 AATAAAAATGATCGAGATAAAATCATAAGTTAA-A
1 AATAAAGATGATCGAGATGAAACCATAAGTTAAGG
* * * * * *
16009297 AATAAAAATAATTGAGACGAAATCAAAAGTTAAGG
1 AATAAAGATGATCGAGATGAAACCATAAGTTAAGG
*
16009332 AATAAAGATGATCGAGATGAAACCATAAGTCAAGG
1 AATAAAGATGATCGAGATGAAACCATAAGTTAAGG
* * *
16009367 AATAAAGATGAGTAG-GACGAAACCGTAAGTT-AGAG
1 AATAAAGATGA-TCGAGATGAAACCATAAGTTAAG-G
*
16009402 AATAAAGATGATCGAAATGAAAC
1 AATAAAGATGATCGAGATGAAAC
16009425 AGCAAGTCAA
Statistics
Matches: 104, Mismatches: 20, Indels: 7
0.79 0.15 0.05
Matches are distributed among these distances:
34 32 0.31
35 70 0.67
36 2 0.02
ACGTcount: A:0.53, C:0.08, G:0.20, T:0.19
Consensus pattern (35 bp):
AATAAAGATGATCGAGATGAAACCATAAGTTAAGG
Found at i:16009441 original size:35 final size:34
Alignment explanation
Indices: 16009255--16009480 Score: 111
Period size: 35 Copynumber: 6.5 Consensus size: 34
16009245 ACAAAGTCAT
* * * ** *
16009255 AGTCAAAAAATAAAAATGATCGAGATAAAATCATA
1 AGTCAAGAAATAAAGATGATCGAAACGAAA-CACA
* * * * * *
16009290 AGTTAA-AAATAAAAATAATTGAGACGAAATCAAA
1 AGTCAAGAAATAAAGATGATCGAAACGAAA-CACA
* * * * *
16009324 AGTTAAGGAATAAAGATGATCGAGATGAAACCATA
1 AGTCAAGAAATAAAGATGATCGAAACGAAA-CACA
* * *
16009359 AGTCAAGGAATAAAGATGAGTAG-GACGAAAC-CGTA
1 AGTCAAGAAATAAAGATGA-TCGAAACGAAACAC--A
* *
16009394 AGT-TAGAGAATAAAGATGATCGAAATGAAACAGCA
1 AGTCAAGA-AATAAAGATGATCGAAACGAAACA-CA
*
16009429 AGTCAAGAAATAAAGGTGA-CTGAAACGAAACTACA
1 AGTCAAGAAATAAAGATGATC-GAAACGAAAC-ACA
*
16009464 AGTCAAAAAATAAAGAT
1 AGTCAAGAAATAAAGAT
16009481 AACTGGGATA
Statistics
Matches: 153, Mismatches: 27, Indels: 22
0.76 0.13 0.11
Matches are distributed among these distances:
34 35 0.23
35 111 0.73
36 6 0.04
37 1 0.01
ACGTcount: A:0.54, C:0.09, G:0.19, T:0.18
Consensus pattern (34 bp):
AGTCAAGAAATAAAGATGATCGAAACGAAACACA
Found at i:16009457 original size:70 final size:70
Alignment explanation
Indices: 16009158--16009459 Score: 172
Period size: 70 Copynumber: 4.3 Consensus size: 70
16009148 ACAAGTTAGA
* * * * * ** * *
16009158 AAATAAAGATGACTATAACAAAACTGTAAGTCAAGGAATAAAGTTGATCGGGAT-AAAGTCACGA
1 AAATAAAGATGACTAGAACGAAACCGTAAGTTAAGGAATAAAGATGATCGAAATGAAA-CCACAA
*
16009222 GTCAAA
65 GTCAAG
* * * * ** * * * * *
16009228 AAACAAAGATGACTGGGAC-AAA--GTCATAGTCAAAAAATAAAAATGATCGAGATAAAATCATA
1 AAATAAAGATGACTAGAACGAAACCGT-A-AGTTAAGGAATAAAGATGATCGAAATGAAACCACA
*
16009290 AGTTAA-
64 AGTCAAG
* * * * ** * *
16009296 AAATAAAAAT-AATTGAGACGAAATCAAAAGTTAAGGAATAAAGATGATCGAGATGAAACCATAA
1 AAATAAAGATGACTAGA-ACGAAACCGTAAGTTAAGGAATAAAGATGATCGAAATGAAACCACAA
16009360 GTCAAG
65 GTCAAG
* * *
16009366 GAATAAAGATGAGTAGGACGAAACCGTAAGTT-AGAGAATAAAGATGATCGAAATGAAA-CAGCA
1 AAATAAAGATGACTAGAACGAAACCGTAAGTTAAG-GAATAAAGATGATCGAAATGAAACCA-CA
16009429 AGTCAAG
64 AGTCAAG
*
16009436 AAATAAAGGTGACT-GAAACGAAAC
1 AAATAAAGATGACTAG-AACGAAAC
16009460 TACAAGTCAA
Statistics
Matches: 180, Mismatches: 40, Indels: 24
0.74 0.16 0.10
Matches are distributed among these distances:
67 5 0.03
68 11 0.06
69 74 0.41
70 87 0.48
71 3 0.02
ACGTcount: A:0.52, C:0.10, G:0.20, T:0.18
Consensus pattern (70 bp):
AAATAAAGATGACTAGAACGAAACCGTAAGTTAAGGAATAAAGATGATCGAAATGAAACCACAAG
TCAAG
Found at i:16009612 original size:34 final size:34
Alignment explanation
Indices: 16009535--16009632 Score: 110
Period size: 34 Copynumber: 2.9 Consensus size: 34
16009525 AAAACCACAG
*
16009535 TCAGG-TGAAACTGCAGGTCAAGGAATAAAAATTA
1 TCAGGATGAAAC-ACAGGTCAAGGAATAAAAATTA
** *
16009569 -CTAAAATGAAACACAGGTTAAGGAATAAAAATTA
1 TC-AGGATGAAACACAGGTCAAGGAATAAAAATTA
*
16009603 TCAGGATGAAATCACAAGTCAAGGAATAAA
1 TCAGGATGAAA-CACAGGTCAAGGAATAAA
16009633 GATGATTGGG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
33 1 0.02
34 28 0.54
35 23 0.44
ACGTcount: A:0.50, C:0.11, G:0.19, T:0.19
Consensus pattern (34 bp):
TCAGGATGAAACACAGGTCAAGGAATAAAAATTA
Found at i:16009645 original size:35 final size:34
Alignment explanation
Indices: 16009574--16009674 Score: 103
Period size: 35 Copynumber: 2.9 Consensus size: 34
16009564 AATTACTAAA
* * * *
16009574 ATGAAACACAGGTTAAGGAATAAAAATTATCAGG
1 ATGAAACACAAGTCAAGGAATAAAGATGATCAGG
**
16009608 ATGAAATCACAAGTCAAGGAATAAAGATGATTGGG
1 ATGAAA-CACAAGTCAAGGAATAAAGATGATCAGG
* **
16009643 ATGAAGCCACAAGTCAAAAAATAAAGATGATC
1 ATGAA-ACACAAGTCAAGGAATAAAGATGATC
16009675 GAGATAAAAT
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
34 6 0.11
35 49 0.89
ACGTcount: A:0.50, C:0.11, G:0.21, T:0.19
Consensus pattern (34 bp):
ATGAAACACAAGTCAAGGAATAAAGATGATCAGG
Found at i:16009744 original size:35 final size:35
Alignment explanation
Indices: 16009698--16009773 Score: 102
Period size: 35 Copynumber: 2.2 Consensus size: 35
16009688 AAATCAGGCG
*
16009698 AAAATCTTAGGT-CAAAGAATAAAGATAACT-GAGAT
1 AAAATCATAGGTCCAAA-AATAAAGATAA-TAGAGAT
*
16009733 AAAATCATAGGTCCAAAAATAAAGATAATAGGGAT
1 AAAATCATAGGTCCAAAAATAAAGATAATAGAGAT
16009768 AAAATC
1 AAAATC
16009774 GTATGTCAGG
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
34 1 0.03
35 32 0.86
36 4 0.11
ACGTcount: A:0.54, C:0.09, G:0.16, T:0.21
Consensus pattern (35 bp):
AAAATCATAGGTCCAAAAATAAAGATAATAGAGAT
Found at i:16010070 original size:35 final size:35
Alignment explanation
Indices: 16010039--16010200 Score: 143
Period size: 35 Copynumber: 4.6 Consensus size: 35
16010029 ACAAAATCAT
*
16010039 AAGTTAGAAAATAAAAATGATTGAAATAAAATCGT
1 AAGTTAGAAAATAAAAATGATTGAAATAAAATCGC
* * ** *
16010074 AAGTCA-ATAAATAAATATGATTGGGATGAAATCGC
1 AAGTTAGA-AAATAAAAATGATTGAAATAAAATCGC
* * *
16010109 AAGTTAGAAAACAAAGATGATTGTAAA-AAAATTGC
1 AAGTTAGAAAATAAAAATGATTG-AAATAAAATCGC
** *
16010144 AAGTTA-AGAAATAAAAATGA-CCAAGATGAAATCGC
1 AAGTTAGA-AAATAAAAATGATTGAA-ATAAAATCGC
*
16010179 AAGTCAGAAAATAAAAATGATT
1 AAGTTAGAAAATAAAAATGATT
16010201 CGTATAACAT
Statistics
Matches: 98, Mismatches: 21, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
33 2 0.02
34 3 0.03
35 90 0.92
36 3 0.03
ACGTcount: A:0.54, C:0.07, G:0.17, T:0.23
Consensus pattern (35 bp):
AAGTTAGAAAATAAAAATGATTGAAATAAAATCGC
Found at i:16010080 original size:70 final size:70
Alignment explanation
Indices: 16010006--16010200 Score: 212
Period size: 70 Copynumber: 2.8 Consensus size: 70
16009996 GAAACTATAG
* ** **
16010006 GTCAAAAAATAAAGATGACTAAGACAAAATCATAAGTTAGAAAATAAAAATGATTG-AAATAAAA
1 GTCAAAAAATAAAAATGACTAAGATGAAATCGCAAGTTAGAAAATAAAAATGATTGTAAA-AAAA
*
16010070 TCGTAA
65 TCGCAA
* * * ** * *
16010076 GTCAATAAATAAATATGATTGGGATGAAATCGCAAGTTAGAAAACAAAGATGATTGTAAAAAAAT
1 GTCAAAAAATAAAAATGACTAAGATGAAATCGCAAGTTAGAAAATAAAAATGATTGTAAAAAAAT
*
16010141 TGCAA
66 CGCAA
* * * *
16010146 GTTAAGAAATAAAAATGACCAAGATGAAATCGCAAGTCAGAAAATAAAAATGATT
1 GTCAAAAAATAAAAATGACTAAGATGAAATCGCAAGTTAGAAAATAAAAATGATT
16010201 CGTATAACAT
Statistics
Matches: 101, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
70 98 0.97
71 3 0.03
ACGTcount: A:0.54, C:0.08, G:0.16, T:0.22
Consensus pattern (70 bp):
GTCAAAAAATAAAAATGACTAAGATGAAATCGCAAGTTAGAAAATAAAAATGATTGTAAAAAAAT
CGCAA
Found at i:16010599 original size:35 final size:35
Alignment explanation
Indices: 16010521--16010602 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
16010511 AAGTCGTAAA
* * *
16010521 TCAAGGAATAGAGTTGGTCATGATGAAATTGCAAG
1 TCAAGGAATAAAGATGGTCAGGATGAAATTGCAAG
* * * **
16010556 TTAGGGAATAAAGATGGTTAGGATGAAATTGTGAG
1 TCAAGGAATAAAGATGGTCAGGATGAAATTGCAAG
16010591 TCAAGGAATAAA
1 TCAAGGAATAAA
16010603 AATGATCGGG
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.40, C:0.05, G:0.29, T:0.26
Consensus pattern (35 bp):
TCAAGGAATAAAGATGGTCAGGATGAAATTGCAAG
Found at i:16010782 original size:35 final size:36
Alignment explanation
Indices: 16010743--16010823 Score: 103
Period size: 35 Copynumber: 2.3 Consensus size: 36
16010733 CATAGGTTAG
* *
16010743 AAAATAAAGATGATCAGGATGAAGTTGT-AATTC-AA
1 AAAATAAAGATGATCAGGATAAAATTGTGAA-TCAAA
* *
16010778 AAAATAAATATGATCGGGATAAAATTGTGAATCAAA
1 AAAATAAAGATGATCAGGATAAAATTGTGAATCAAA
16010814 AAAATAAAGA
1 AAAATAAAGA
16010824 AACGACTAGG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
35 26 0.67
36 13 0.33
ACGTcount: A:0.54, C:0.05, G:0.17, T:0.23
Consensus pattern (36 bp):
AAAATAAAGATGATCAGGATAAAATTGTGAATCAAA
Found at i:16012247 original size:27 final size:26
Alignment explanation
Indices: 16012217--16012273 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
16012207 TAGAAAATGC
16012217 AAAAAATAAAAATA-AAAAAAATCACA
1 AAAAAATAAAAATACAAAAAAATCA-A
* * *
16012243 AAAAATTAAAAA-ACCAAAAAATTAA
1 AAAAAATAAAAATACAAAAAAATCAA
16012268 AAAAAA
1 AAAAAA
16012274 ATTAAAATGA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.81, C:0.07, G:0.00, T:0.12
Consensus pattern (26 bp):
AAAAAATAAAAATACAAAAAAATCAA
Found at i:16012253 original size:16 final size:16
Alignment explanation
Indices: 16012241--16012271 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
16012231 AAAAAAATCA
16012241 CAAAAAATTAAAAAAC
1 CAAAAAATTAAAAAAC
16012257 CAAAAAATTAAAAAA
1 CAAAAAATTAAAAAA
16012272 AAATTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.10, G:0.00, T:0.13
Consensus pattern (16 bp):
CAAAAAATTAAAAAAC
Found at i:16012253 original size:26 final size:26
Alignment explanation
Indices: 16012216--16012280 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
16012206 ATAGAAAATG
*
16012216 CAAAAAA-TAAAAATA-AAAAAAATCA
1 CAAAAAATTAAAAA-ACAAAAAAATAA
*
16012241 CAAAAAATTAAAAAACCAAAAAATTAA
1 CAAAAAATTAAAAAA-CAAAAAAATAA
*
16012268 AAAAAAATTAAAA
1 CAAAAAATTAAAA
16012281 TGAATACGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 8 0.24
26 6 0.18
27 20 0.59
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (26 bp):
CAAAAAATTAAAAAACAAAAAAATAA
Found at i:16012986 original size:11 final size:11
Alignment explanation
Indices: 16012968--16013017 Score: 68
Period size: 11 Copynumber: 4.6 Consensus size: 11
16012958 ATGGTATCTT
16012968 AATAAAAAATTA
1 AATAAAAAA-TA
*
16012980 ATTAAAAAATA
1 AATAAAAAATA
16012991 AATAAAAAATA
1 AATAAAAAATA
16013002 AAT--AAAATA
1 AATAAAAAATA
16013011 AATAAAA
1 AATAAAA
16013018 GGAAAAATAG
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
9 9 0.26
11 17 0.50
12 8 0.24
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (11 bp):
AATAAAAAATA
Found at i:16012993 original size:4 final size:4
Alignment explanation
Indices: 16012968--16013016 Score: 50
Period size: 4 Copynumber: 12.5 Consensus size: 4
16012958 ATGGTATCTT
*
16012968 AATA AA-A AATTA ATTA AA-A AATA AATA AA-A AATA AATAA AATA AATA
1 AATA AATA AA-TA AATA AATA AATA AATA AATA AATA AAT-A AATA AATA
16013015 AA
1 AA
16013017 AGGAAAAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 9 0.24
4 23 0.61
5 6 0.16
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (4 bp):
AATA
Found at i:16012998 original size:23 final size:24
Alignment explanation
Indices: 16012968--16013016 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 24
16012958 ATGGTATCTT
* *
16012968 AATAAAAAATTAATTAAA-AAATA
1 AATAAAAAATAAATAAAATAAATA
16012991 AATAAAAAATAAATAAAATAAATA
1 AATAAAAAATAAATAAAATAAATA
16013015 AA
1 AA
16013017 AGGAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (24 bp):
AATAAAAAATAAATAAAATAAATA
Found at i:16013798 original size:52 final size:55
Alignment explanation
Indices: 16013734--16013870 Score: 145
Period size: 59 Copynumber: 2.5 Consensus size: 55
16013724 ACATCACAAA
* * * *
16013734 AAAAAGATATTTG-T-ATTTGCATCACTTGCATTCATA-TTATATGTGCATTATG
1 AAAAAGACATTTGATCATTTGCATCACTTACATTCATACTTATATATGCATCATG
* *
16013786 AAAAAGACATTTGCATTCACATTTGTATCACTTACATTCGTACTTATATATGCATCATG
1 AAAAAGACATTTG-A-T--CATTTGCATCACTTACATTCATACTTATATATGCATCATG
*
16013845 AGAAAGACATTTGCATCATTTGCATC
1 AAAAAGACATTTG-ATCATTTGCATC
16013871 TATATAAAAA
Statistics
Matches: 70, Mismatches: 8, Indels: 10
0.80 0.09 0.11
Matches are distributed among these distances:
52 12 0.17
55 1 0.01
56 9 0.13
58 20 0.29
59 28 0.40
ACGTcount: A:0.34, C:0.16, G:0.12, T:0.38
Consensus pattern (55 bp):
AAAAAGACATTTGATCATTTGCATCACTTACATTCATACTTATATATGCATCATG
Found at i:16013816 original size:58 final size:59
Alignment explanation
Indices: 16013748--16013860 Score: 165
Period size: 59 Copynumber: 1.9 Consensus size: 59
16013738 AGATATTTGT
* * *
16013748 ATTTGCATCACTTGCATTCATA-TTATATGTGCATTATGAAAAAGACATTTGCATTCAC
1 ATTTGCATCACTTACATTCATACTTATATATGCATCATGAAAAAGACATTTGCATTCAC
* * *
16013806 ATTTGTATCACTTACATTCGTACTTATATATGCATCATGAGAAAGACATTTGCAT
1 ATTTGCATCACTTACATTCATACTTATATATGCATCATGAAAAAGACATTTGCAT
16013861 CATTTGCATC
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 19 0.40
59 29 0.60
ACGTcount: A:0.33, C:0.17, G:0.12, T:0.38
Consensus pattern (59 bp):
ATTTGCATCACTTACATTCATACTTATATATGCATCATGAAAAAGACATTTGCATTCAC
Found at i:16014101 original size:86 final size:86
Alignment explanation
Indices: 16014005--16014182 Score: 243
Period size: 86 Copynumber: 2.1 Consensus size: 86
16013995 CTTACATCTA
* *
16014005 CATCAC-AAAAAAGAACA-TCTACATTTGCATCACTTGCATCCATACTTGTATGTGCATTATGAG
1 CATCACAAAAAAAG-ACATTC-ACATTTGCATCACTTGCATCCATACTTGCATGTGCATCATGAG
*
16014068 AAAGATATTTGCATTCACATTTG
64 AAAGACATTTGCATTCACATTTG
* * * * **
16014091 CATCATAAAAAAAGACATTCGCATTTTCATCACTTGCATTCATGTTTGCATGTGCATCATGAGAA
1 CATCACAAAAAAAGACATTCACATTTGCATCACTTGCATCCATACTTGCATGTGCATCATGAGAA
16014156 AGACATTTGCATTCACATTTG
66 AGACATTTGCATTCACATTTG
16014177 CATCAC
1 CATCAC
16014183 TTGCATCTAC
Statistics
Matches: 80, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
86 71 0.89
87 9 0.11
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.33
Consensus pattern (86 bp):
CATCACAAAAAAAGACATTCACATTTGCATCACTTGCATCCATACTTGCATGTGCATCATGAGAA
AGACATTTGCATTCACATTTG
Found at i:16014205 original size:101 final size:103
Alignment explanation
Indices: 16014091--16014283 Score: 275
Period size: 101 Copynumber: 1.9 Consensus size: 103
16014081 TTCACATTTG
* ** * * *
16014091 CATCATAAAAAAAGACATTCGCATTT-TCATCACTTGCATTCATGTTTGCATGTGCATCATGAGA
1 CATCATAAAAAAAGACATTCGCATTTGT-ATCACTTACATTCACATTTACATATGCATCATGAAA
16014155 AAGACATTTGCATT-C-ACATTTGCATCACTTGCATCTA
65 AAGACATTTGCATTACTACATTTGCATCACTTGCATCTA
* *
16014192 CATCATAAAAAAAGACATTCGCATTTGTATTACTTACATTCGCATTTACATATGCATCATGAAAA
1 CATCATAAAAAAAGACATTCGCATTTGTATCACTTACATTCACATTTACATATGCATCATGAAAA
16014257 AGACATTTGCATTACTTACATTTGCAT
66 AGACATTTGCATTAC-TACATTTGCAT
16014284 AAAAAAAATT
Statistics
Matches: 80, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
101 68 0.85
102 2 0.03
104 10 0.12
ACGTcount: A:0.34, C:0.20, G:0.11, T:0.34
Consensus pattern (103 bp):
CATCATAAAAAAAGACATTCGCATTTGTATCACTTACATTCACATTTACATATGCATCATGAAAA
AGACATTTGCATTACTACATTTGCATCACTTGCATCTA
Found at i:16014380 original size:120 final size:124
Alignment explanation
Indices: 16014166--16014389 Score: 287
Period size: 120 Copynumber: 1.8 Consensus size: 124
16014156 AGACATTTGC
* *
16014166 ATTCACATTTGCATCACTTGCATCTACATCATAAAAAAAGACATTCGCATTTGTATTACTTACAT
1 ATTCACATTTGCATCACTTGCATCTA-ATCATAAAAAAAGACATTCACATTTGTATCACTTACAT
*
16014231 TCGCATTTACATATGCATCATGAAAAAGACATTTGCATTACTTACATTTGCATAAAAAAA
65 TCGCACTTACATATGCATCATGAAAAAGACATTTGCATTACTTACATTTGCATAAAAAAA
* * * *
16014291 ATTCATATTTGCATCACTTGTATCT-GT-ATAAAAAAA-A-ATTCACATTTGTATCACTTGCATT
1 ATTCACATTTGCATCACTTGCATCTAATCATAAAAAAAGACATTCACATTTGTATCACTTACATT
* ** * *
16014352 TGCACTTGTATGTGTATCAT-AAGAAAGACATTTGCATT
66 CGCACTTACATATGCATCATGAA-AAAGACATTTGCATT
16014390 TACATCTACA
Statistics
Matches: 86, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
119 2 0.02
120 50 0.58
121 1 0.01
122 9 0.10
123 1 0.01
125 23 0.27
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (124 bp):
ATTCACATTTGCATCACTTGCATCTAATCATAAAAAAAGACATTCACATTTGTATCACTTACATT
CGCACTTACATATGCATCATGAAAAAGACATTTGCATTACTTACATTTGCATAAAAAAA
Found at i:16014405 original size:120 final size:123
Alignment explanation
Indices: 16014166--16014477 Score: 280
Period size: 120 Copynumber: 2.5 Consensus size: 123
16014156 AGACATTTGC
* *
16014166 ATTCACATTTGCATCACTTGCATCTACATCATAAAAAAAGACATTCGCATTTGTATTACTTACAT
1 ATTCACATTTGCATCACTTGCATCTA-ATCATAAAAAAAGACATTCACATTTGTATCACTTACAT
*
16014231 TCGCATTTACATATGCATCATGAAAAAGACATTTGCATTACTTACATTTGCATAAAAAAA
65 TCGCACTTACATATGCATCATGAAAAAGACATTTGCATTACTTACA-TTGCATAAAAAAA
* * * *
16014291 ATTCATATTTGCATCACTTGTATCT-GT-ATAAAAAAA-A-ATTCACATTTGTATCACTTGCATT
1 ATTCACATTTGCATCACTTGCATCTAATCATAAAAAAAGACATTCACATTTGTATCACTTACATT
* ** * *
16014352 TGCACTTGTATGTGTATCAT-AAGAAAGACATTTGCATTTACATCTACA-T-CATAAAAAAGA
66 CGCACTTACATATGCATCATGAA-AAAGACATTTGCA-TTAC-T-TACATTGCATAAAAAA-A
** ** * * * ** * *
16014412 TATTTGCATTTGCATTGCTTGCATCTGCATCAT-AAGAAAGATATTTGCATTTGCATCACTTGCA
1 -ATTCACATTTGCATCACTTGCATCT-AATCATAAAAAAAGACATTCACATTTGTATCACTTACA
16014476 TT
64 TT
16014478 TGTATTTGTA
Statistics
Matches: 153, Mismatches: 23, Indels: 21
0.78 0.12 0.11
Matches are distributed among these distances:
119 2 0.01
120 57 0.37
121 7 0.05
122 29 0.19
123 5 0.03
124 6 0.04
125 26 0.17
126 21 0.14
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (123 bp):
ATTCACATTTGCATCACTTGCATCTAATCATAAAAAAAGACATTCACATTTGTATCACTTACATT
CGCACTTACATATGCATCATGAAAAAGACATTTGCATTACTTACATTGCATAAAAAAA
Found at i:16014443 original size:41 final size:41
Alignment explanation
Indices: 16014392--16014476 Score: 134
Period size: 41 Copynumber: 2.1 Consensus size: 41
16014382 TTTGCATTTA
**
16014392 CATCTACATCATAAAAAAGATATTTGCATTTGCATTGCTTG
1 CATCTACATCATAAAAAAGATATTTGCATTTGCATCACTTG
* *
16014433 CATCTGCATCATAAGAAAGATATTTGCATTTGCATCACTTG
1 CATCTACATCATAAAAAAGATATTTGCATTTGCATCACTTG
16014474 CAT
1 CAT
16014477 TTGTATTTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (41 bp):
CATCTACATCATAAAAAAGATATTTGCATTTGCATCACTTG
Found at i:16015288 original size:104 final size:105
Alignment explanation
Indices: 16015108--16015335 Score: 316
Period size: 104 Copynumber: 2.2 Consensus size: 105
16015098 GGGAAGCTAT
* * * **
16015108 TTTTAAAGTTTCAATGCCTCTAATTGGGAGGTGCATTCAAAGATTTTAAGATTTGTAAGACCTTT
1 TTTTAAAGTTTCAATGCCTCTAATTGAGAGGAGCATTCAAAGATTTTAAGATTCGTAAGACCTCC
*
16015173 GAGCATAATCTCTAAGA-CTTCTAAG-CAAACATTTTAAAA
66 GAGCATAATCTCTAAGATCTTC-AAGTAAAACATTTTAAAA
* * *
16015212 TTTTAAAGTTTCAATGCCTCTGATTGAGAGGAGCATTTAAAGATTTTGAGATTCGTAAGACCTCC
1 TTTTAAAGTTTCAATGCCTCTAATTGAGAGGAGCATTCAAAGATTTTAAGATTCGTAAGACCTCC
**
16015277 GAGCATAATCTCTAAGATCTTCGGGTAAAACATTTTAAAA
66 GAGCATAATCTCTAAGATCTTCAAGTAAAACATTTTAAAA
* *
16015317 TTTCAAAGTTTCAAAGCCT
1 TTTTAAAGTTTCAATGCCT
16015336 TTAAAGCCTC
Statistics
Matches: 109, Mismatches: 13, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
104 75 0.69
105 34 0.31
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (105 bp):
TTTTAAAGTTTCAATGCCTCTAATTGAGAGGAGCATTCAAAGATTTTAAGATTCGTAAGACCTCC
GAGCATAATCTCTAAGATCTTCAAGTAAAACATTTTAAAA
Found at i:16016189 original size:16 final size:15
Alignment explanation
Indices: 16016168--16016223 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 15
16016158 AATTTTATAA
16016168 ATTTTAATTTCATTAT
1 ATTTTAATTT-ATTAT
16016184 ATTTTATGATTT-TTAT
1 ATTTTA--ATTTATTAT
16016200 AAATTTTAATTTTATTAT
1 --ATTTTAA-TTTATTAT
16016218 ATTTTA
1 ATTTTA
16016224 TGATTTTTGG
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
16 17 0.50
17 3 0.09
18 14 0.41
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (15 bp):
ATTTTAATTTATTAT
Found at i:16016230 original size:18 final size:18
Alignment explanation
Indices: 16016174--16016230 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
16016164 ATAAATTTTA
*
16016174 ATTTCATTATATTTTATG
1 ATTTTATTATATTTTATG
*
16016192 ATTTT-TATAAATTTTA--
1 ATTTTAT-TATATTTTATG
16016208 ATTTTATTATATTTTATG
1 ATTTTATTATATTTTATG
16016226 ATTTT
1 ATTTT
16016231 TGGTGTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
16 13 0.41
17 2 0.06
18 17 0.53
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.65
Consensus pattern (18 bp):
ATTTTATTATATTTTATG
Found at i:16016242 original size:34 final size:34
Alignment explanation
Indices: 16016160--16016231 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
16016150 TTTCATAAAA
16016160 TTTTATAAATTTTAATTTCATTATATTTTATGAT
1 TTTTATAAATTTTAATTTCATTATATTTTATGAT
*
16016194 TTTTATAAATTTTAATTTTATTATATTTTATGAT
1 TTTTATAAATTTTAATTTCATTATATTTTATGAT
16016228 TTTT
1 TTTT
16016232 GGTGTATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (34 bp):
TTTTATAAATTTTAATTTCATTATATTTTATGAT
Found at i:16017088 original size:24 final size:24
Alignment explanation
Indices: 16017042--16017088 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
16017032 AAGAATAGGA
* * *
16017042 AGCTACCAGAAAGAATAGGGAGGT
1 AGCTACCAAAAAGAAAAGAGAGGT
*
16017066 AGCTACCAAAAATAAAAGAGAGG
1 AGCTACCAAAAAGAAAAGAGAGG
16017089 AAGCAAGCTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.49, C:0.13, G:0.28, T:0.11
Consensus pattern (24 bp):
AGCTACCAAAAAGAAAAGAGAGGT
Found at i:16020971 original size:10 final size:9
Alignment explanation
Indices: 16020933--16021003 Score: 53
Period size: 9 Copynumber: 8.2 Consensus size: 9
16020923 TTAATATAAC
16020933 TATTAAAA-
1 TATTAAAAT
16020941 TATTAAAAAT
1 TATT-AAAAT
*
16020951 TATT--TAT
1 TATTAAAAT
16020958 TATTAAAAT
1 TATTAAAAT
*
16020967 ATATTGAAAT
1 -TATTAAAAT
*
16020977 TATT--TAT
1 TATTAAAAT
16020984 TATTAAAAT
1 TATTAAAAT
*
16020993 TATTAATAT
1 TATTAAAAT
16021002 TA
1 TA
16021004 AAAATAATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
7 12 0.24
8 4 0.08
9 22 0.44
10 12 0.24
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (9 bp):
TATTAAAAT
Found at i:16020983 original size:26 final size:26
Alignment explanation
Indices: 16020933--16021003 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
16020923 TTAATATAAC
*
16020933 TATTAAAATAT-TAAAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
16020958 TATTAAAATATATTGAAATTATTTAT
1 TATTAAAATATATTAAAATTATTTAT
*
16020984 TATTAAAAT-TATTAATATTA
1 TATTAAAATATATTAAAATTA
16021004 AAAATAATTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 20 0.49
26 21 0.51
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (26 bp):
TATTAAAATATATTAAAATTATTTAT
Found at i:16021004 original size:15 final size:15
Alignment explanation
Indices: 16020967--16021053 Score: 61
Period size: 16 Copynumber: 5.5 Consensus size: 15
16020957 TTATTAAAAT
*
16020967 ATATTGAAATTATTTA
1 ATATTAAAATTA-TTA
*
16020983 TTATTAAAATTATTA
1 ATATTAAAATTATTA
*
16020998 ATATTAAAAATAATTA
1 ATATT-AAAATTATTA
*
16021014 TATTTTAATAATAATATTTA
1 -ATATTAA-AAT--TA-TTA
16021034 ATATTAAAA-TATT-
1 ATATTAAAATTATTA
16021047 ATATTAA
1 ATATTAA
16021054 TATAAAAAAA
Statistics
Matches: 58, Mismatches: 7, Indels: 15
0.73 0.09 0.19
Matches are distributed among these distances:
13 7 0.12
14 2 0.03
15 9 0.16
16 21 0.36
17 7 0.12
18 2 0.03
19 7 0.12
20 3 0.05
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (15 bp):
ATATTAAAATTATTA
Found at i:16021117 original size:23 final size:24
Alignment explanation
Indices: 16021091--16021272 Score: 123
Period size: 23 Copynumber: 7.5 Consensus size: 24
16021081 TATTATTGTT
16021091 TATATTATTTATTAATATATTA-A
1 TATATTATTTATTAATATATTATA
16021114 TATATTATTTATTAATAATATTTATTA
1 TATATTATTTATTAAT-ATA-TTA-TA
*
16021141 TATATTATATTAATAATATATTAT-
1 TATATTAT-TTATTAATATATTATA
* *
16021165 T-TATTCATATATT-AT-TATAATA
1 TATATT-ATTTATTAATATATTATA
* *
16021187 TTTATTAATTAAATTAATAATATT-TA
1 TATATT-ATT-TATTAAT-ATATTATA
* * *
16021213 T-TATGCTATATTATTTAT-TAATAGA
1 TATAT--TAT-TTATTAATATATTATA
16021238 -ATATTATTTATTAATATATTA-A
1 TATATTATTTATTAATATATTATA
16021260 TATATTATTTATT
1 TATATTATTTATT
16021273 CCTATATGAT
Statistics
Matches: 126, Mismatches: 14, Indels: 38
0.71 0.08 0.21
Matches are distributed among these distances:
21 5 0.04
22 11 0.09
23 48 0.38
24 12 0.10
25 13 0.10
26 13 0.10
27 17 0.13
28 7 0.06
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (24 bp):
TATATTATTTATTAATATATTATA
Found at i:16021134 original size:18 final size:18
Alignment explanation
Indices: 16021111--16021253 Score: 83
Period size: 18 Copynumber: 7.1 Consensus size: 18
16021101 ATTAATATAT
16021111 TAATATATTATTTATTAA
1 TAATATATTATTTATTAA
16021129 TAATATTTATTATATATTATATTAA
1 T-A-A--TA-TAT-TATT-TATTAA
16021154 TAATATATTATTTATTCATA
1 TAATATATTATTTATT-A-A
*
16021174 TATTATTATAATATTTATTAA
1 TA--A-TATATTATTTATTAA
*
16021195 TTAAATTAATAATATTTATT-A
1 -T-AA-T-ATATTATTTATTAA
**
16021216 TGCTATATTATTTATTAA
1 TAATATATTATTTATTAA
16021234 TAGA-ATATTATTTATTAA
1 TA-ATATATTATTTATTAA
16021252 TA
1 TA
16021254 TATTAATATA
Statistics
Matches: 102, Mismatches: 6, Indels: 34
0.72 0.04 0.24
Matches are distributed among these distances:
17 11 0.11
18 24 0.24
19 6 0.06
20 8 0.08
21 7 0.07
22 17 0.17
23 17 0.17
24 5 0.05
25 7 0.07
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (18 bp):
TAATATATTATTTATTAA
Found at i:16021169 original size:66 final size:62
Alignment explanation
Indices: 16021091--16021235 Score: 184
Period size: 66 Copynumber: 2.3 Consensus size: 62
16021081 TATTATTGTT
* *
16021091 TATATTATTTATTAATATATTAATATATTATTTATTAA-TAATATTTATTATATATTATATTAAT
1 TATATTATTTATTAATATATTAATATAATATTTATTAATTAA-A-TTAATA-ATATT-TATT-AT
16021155 AA
61 AA
* * **
16021157 TATATTATTTATTCATATATTATTATAATATTTATTAATTAAATTAATAATATTTATTATGC
1 TATATTATTTATTAATATATTAATATAATATTTATTAATTAAATTAATAATATTTATTATAA
16021219 TATATTATTTATTAATA
1 TATATTATTTATTAATA
16021236 GAATATTATT
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
62 18 0.25
63 4 0.06
64 5 0.07
65 5 0.07
66 36 0.51
67 3 0.04
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.56
Consensus pattern (62 bp):
TATATTATTTATTAATATATTAATATAATATTTATTAATTAAATTAATAATATTTATTATAA
Found at i:16021233 original size:35 final size:34
Alignment explanation
Indices: 16021171--16021250 Score: 81
Period size: 35 Copynumber: 2.3 Consensus size: 34
16021161 TTATTTATTC
*
16021171 ATATATTATTATAATATTTATTAATTAA-ATTAATA
1 ATAT-TTATTATAATATTTATTAATTAATA-GAATA
** *
16021206 ATATTTATTATGCTATATTATTTATTAATAGAATA
1 ATATTTATTATAATAT-TTATTAATTAATAGAATA
*
16021241 TTATTTATTA
1 ATATTTATTA
16021251 ATATATTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
34 10 0.26
35 27 0.71
36 1 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (34 bp):
ATATTTATTATAATATTTATTAATTAATAGAATA
Found at i:16021248 original size:80 final size:75
Alignment explanation
Indices: 16021124--16021272 Score: 210
Period size: 80 Copynumber: 1.9 Consensus size: 75
16021114 TATATTATTT
* *
16021124 ATTAATAATATTTATTATATATTATATTAATAATATATTATTTATTCATATATTATTATAATATT
1 ATTAATAATATTTATTATATATTATATTAATAATATATTATTTATTAATATATTAATATAATATT
16021189 TATTAATTAA
66 TATTAATTAA
16021199 ATTAATAATATTTATTATGCTATATTATTTATTAATAGA-ATATTATTTATTAATATATTAATAT
1 ATTAATAATATTTATTA---TATATTA--TATTAATA-ATATATTATTTATTAATATATTAATAT
*
16021263 ATTATTTATT
60 AATATTTATT
16021273 CCTATATGAT
Statistics
Matches: 65, Mismatches: 3, Indels: 7
0.87 0.04 0.09
Matches are distributed among these distances:
75 17 0.26
78 7 0.11
80 40 0.62
81 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (75 bp):
ATTAATAATATTTATTATATATTATATTAATAATATATTATTTATTAATATATTAATATAATATT
TATTAATTAA
Found at i:16028916 original size:14 final size:16
Alignment explanation
Indices: 16028897--16028929 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
16028887 AAGATTATGC
16028897 AAAAATAA-TCAT-AT
1 AAAAATAATTCATAAT
16028911 AAAAATAATTCATAAT
1 AAAAATAATTCATAAT
16028927 AAA
1 AAA
16028930 TCATGCAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (16 bp):
AAAAATAATTCATAAT
Found at i:16028989 original size:27 final size:25
Alignment explanation
Indices: 16028959--16029015 Score: 80
Period size: 24 Copynumber: 2.2 Consensus size: 25
16028949 AAAAATCATG
*
16028959 AAAAATATCATGTAAATAAATATAAT
1 AAAAA-ATCAAGTAAATAAATATAAT
16028985 -AAAAATCAAGTAAATAAATATAAT
1 AAAAAATCAAGTAAATAAATATAAT
16029009 AATAAAA
1 AA-AAAA
16029016 ATCCTATCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 19 0.68
25 5 0.18
26 4 0.14
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.26
Consensus pattern (25 bp):
AAAAAATCAAGTAAATAAATATAAT
Found at i:16028997 original size:24 final size:25
Alignment explanation
Indices: 16028960--16029010 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
16028950 AAAATCATGA
*
16028960 AAAATATCATGTAAATAAATATAAT
1 AAAATATCAAGTAAATAAATATAAT
16028985 AAAA-ATCAAGTAAATAAATATAAT
1 AAAATATCAAGTAAATAAATATAAT
16029009 AA
1 AA
16029011 TAAAAATCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 21 0.84
25 4 0.16
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.27
Consensus pattern (25 bp):
AAAATATCAAGTAAATAAATATAAT
Found at i:16029550 original size:17 final size:18
Alignment explanation
Indices: 16029530--16029563 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
16029520 TTAAATTTCA
*
16029530 AATC-TAAATAAAATCAC
1 AATCTTAAAAAAAATCAC
16029547 AATCTTAAAAAAAATCA
1 AATCTTAAAAAAAATCA
16029564 AAATTTATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.24
Consensus pattern (18 bp):
AATCTTAAAAAAAATCAC
Found at i:16029761 original size:8 final size:8
Alignment explanation
Indices: 16029748--16029778 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
16029738 AAACTTTCAA
16029748 AAACTTTG
1 AAACTTTG
16029756 AAACTTTG
1 AAACTTTG
16029764 AAACTTTG
1 AAACTTTG
16029772 AAACTTT
1 AAACTTT
16029779 TAGAAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.39, C:0.13, G:0.10, T:0.39
Consensus pattern (8 bp):
AAACTTTG
Found at i:16029815 original size:42 final size:43
Alignment explanation
Indices: 16029767--16029872 Score: 135
Period size: 43 Copynumber: 2.5 Consensus size: 43
16029757 AACTTTGAAA
* * *
16029767 CTTTGAAACTTTTAGAAAATAAAAT--GTTCTCCCCACGGGAGG
1 CTTTGAAACTTTTAGAAAATAAAATACATCCT-CCCACGAGAGG
* *
16029809 CTTTGAAACTTTTGGAAAATAAAATACATCCTCCCACTAGAGG
1 CTTTGAAACTTTTAGAAAATAAAATACATCCTCCCACGAGAGG
*
16029852 CTTTGAAACTTTTAAAAAATA
1 CTTTGAAACTTTTAGAAAATA
16029873 GAAGAAATAT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
42 24 0.44
43 28 0.51
44 3 0.05
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30
Consensus pattern (43 bp):
CTTTGAAACTTTTAGAAAATAAAATACATCCTCCCACGAGAGG
Found at i:16030547 original size:49 final size:49
Alignment explanation
Indices: 16030471--16030616 Score: 127
Period size: 49 Copynumber: 3.0 Consensus size: 49
16030461 TGGTGCAATG
* *
16030471 ATTTA-AATTCACACAAATTGATGCAAATACAT-AGTCCAAAAAATTATGCA
1 ATTTATAATTCTC-CAAA-TGATGCAAATACATGA-TCCAAAAAATTACGCA
* * *
16030521 ATTTATAATTCTCCAAATGATGCAAATGCATGATCCAAATAATTACGTA
1 ATTTATAATTCTCCAAATGATGCAAATACATGATCCAAAAAATTACGCA
* ** * * * *
16030570 GTTTATAAATT-TCTTAATGATGCAAATGCATTATCTAAACAATTACG
1 ATTTAT-AATTCTCCAAATGATGCAAATACATGATCCAAAAAATTACG
16030617 TAGATGCAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
49 62 0.76
50 14 0.17
51 6 0.07
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (49 bp):
ATTTATAATTCTCCAAATGATGCAAATACATGATCCAAAAAATTACGCA
Found at i:16031629 original size:13 final size:12
Alignment explanation
Indices: 16031604--16031655 Score: 56
Period size: 13 Copynumber: 4.3 Consensus size: 12
16031594 CCTTTCCACA
16031604 TTTC-TTTTC-T
1 TTTCTTTTTCAT
16031614 TTTCATTTTTCAT
1 TTTC-TTTTTCAT
16031627 TTTCTCTTTTCAT
1 TTTCT-TTTTCAT
16031640 TTT-TTTTTCAT
1 TTTCTTTTTCAT
16031651 GTTTC
1 -TTTC
16031656 CGTTCTAATA
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 4 0.11
11 7 0.19
12 10 0.28
13 15 0.42
ACGTcount: A:0.08, C:0.17, G:0.02, T:0.73
Consensus pattern (12 bp):
TTTCTTTTTCAT
Found at i:16031634 original size:25 final size:25
Alignment explanation
Indices: 16031606--16031655 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
16031596 TTTCCACATT
16031606 TCTTTTC-TTTTCATTTTTCAT-TTTC
1 TCTTTTCATTTT--TTTTTCATGTTTC
16031631 TCTTTTCATTTTTTTTTCATGTTTC
1 TCTTTTCATTTTTTTTTCATGTTTC
16031656 CGTTCTAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 8 0.35
25 11 0.48
26 4 0.17
ACGTcount: A:0.08, C:0.18, G:0.02, T:0.72
Consensus pattern (25 bp):
TCTTTTCATTTTTTTTTCATGTTTC
Found at i:16043128 original size:15 final size:17
Alignment explanation
Indices: 16043108--16043141 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
16043098 CAATAACTTA
16043108 AACTAAA-A-AGAAAAG
1 AACTAAAGAGAGAAAAG
16043123 AACTAAAGAGAGAAAAG
1 AACTAAAGAGAGAAAAG
16043140 AA
1 AA
16043142 TAATGAGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.71, C:0.06, G:0.18, T:0.06
Consensus pattern (17 bp):
AACTAAAGAGAGAAAAG
Found at i:16045539 original size:46 final size:46
Alignment explanation
Indices: 16045443--16045539 Score: 104
Period size: 46 Copynumber: 2.1 Consensus size: 46
16045433 TCTTTAAATG
* * * * * *
16045443 AATAATTCATGAATTATTGAAGGCATTTTTGGCCAAAAATTCCTTA
1 AATAATCCATGAATTATTCAAAGCATTTTTAGCCAAAAATGCCATA
** * *
16045489 AATAATCCATGAATTATTCAAAGTGTTTTTAGCTAAAAATGCCATC
1 AATAATCCATGAATTATTCAAAGCATTTTTAGCCAAAAATGCCATA
16045535 AATAA
1 AATAA
16045540 CCTAATTCAA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.35
Consensus pattern (46 bp):
AATAATCCATGAATTATTCAAAGCATTTTTAGCCAAAAATGCCATA
Found at i:16046658 original size:16 final size:15
Alignment explanation
Indices: 16046637--16046671 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
16046627 GTAAACATTT
16046637 TTTTTATAAAATAATA
1 TTTTTATAAAA-AATA
*
16046653 TTTTTATATAAAATA
1 TTTTTATAAAAAATA
16046668 TTTT
1 TTTT
16046672 CTTGAAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTTTTATAAAAAATA
Found at i:16047621 original size:49 final size:49
Alignment explanation
Indices: 16047567--16047680 Score: 210
Period size: 49 Copynumber: 2.3 Consensus size: 49
16047557 CATAATAAGA
*
16047567 TTTATATAATTGTTTAAATTGTATATGATTGTTTACATGCTGTTTAGAT
1 TTTATATAATTGTTTAAATTGTATATGATCGTTTACATGCTGTTTAGAT
16047616 TTTATATAATTGTTTAAATTGTATATGATCGTTTACATGCTGTTTAGAT
1 TTTATATAATTGTTTAAATTGTATATGATCGTTTACATGCTGTTTAGAT
*
16047665 TATATATAATTGTTTA
1 TTTATATAATTGTTTA
16047681 TTGTTTGTCT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 63 1.00
ACGTcount: A:0.30, C:0.04, G:0.13, T:0.53
Consensus pattern (49 bp):
TTTATATAATTGTTTAAATTGTATATGATCGTTTACATGCTGTTTAGAT
Found at i:16047649 original size:19 final size:19
Alignment explanation
Indices: 16047608--16047650 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
16047598 TTTACATGCT
* * *
16047608 GTTTAGATTTTATATAATT
1 GTTTAAATTGTATATAATC
*
16047627 GTTTAAATTGTATATGATC
1 GTTTAAATTGTATATAATC
16047646 GTTTA
1 GTTTA
16047651 CATGCTGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.30, C:0.02, G:0.14, T:0.53
Consensus pattern (19 bp):
GTTTAAATTGTATATAATC
Found at i:16047944 original size:241 final size:248
Alignment explanation
Indices: 16047488--16048012 Score: 694
Period size: 241 Copynumber: 2.1 Consensus size: 248
16047478 AAGGTGGCAA
* *
16047488 CATTTGTAATCAAATACTATATATATGGTGGTTTTTCCAATTAAATATATATAATAAAGAATTTG
1 CATTTGTAATCAAATACTATATATATGGTGCTTTTTCCAATTAAATATATATAACAAAGAATTTG
* * ** * * *
16047553 GTAGCATAATAAGATTTATATAATTGTTTAAATTGTATATGATTGTTTACATGCTGTTTAGATTT
66 GCAGCATAATAAGATTTATATAATTGTTTAAATTATATACAATTGTTTACATACTGTTTACATTA
16047618 TATATAATTGTTTAAATTGTATATGATCGTTTACATGCTGTTTAGATTATATATAATTGTTTATT
131 TATATAATTGTTT-AATTGTATATGA----TTACAT-CTGTTTAGATTATATATAATTGTTTATT
* *
16047683 GTTTGTCTTTTTCAATTAAATATATATAATAAAAATATATAATTGTTTATATGGTGGCT-G
190 GTTTGGCTTTTTCAATTAAATATATATAATAAAAATATATAATTATTTA-ATGGTGG-TGG
* * * *
16047743 CATTTGTAATCAAATACTATATATATGGTGCCTTTTT-TAATTAAATATATGAT-GCCAA-CATT
1 CATTTGTAATCAAATACTATATATATGGTG-CTTTTTCCAATTAAATATAT-ATAACAAAGAATT
* * * *
16047805 TGGCAGCATAATAAGGTTTATATAATTGTTTAGATTATATACAATTTTTTACTTACTG-TTACAT
64 TGGCAGCATAATAAGATTTATATAATTGTTTAAATTATATACAATTGTTTACATACTGTTTACAT
*
16047869 TATATATAATTGTTT-ATTGT-T-T-A-TATAT-TGTTTAGATTATATATAATTGTTTATTGTTT
129 TATATATAATTGTTTAATTGTATATGATTACATCTGTTTAGATTATATATAATTGTTTATTGTTT
16047928 GGCTTTTTCAATTAAATATATATAATAAAAATATATAATTATTTAATGGTGGTGG
194 GGCTTTTTCAATTAAATATATATAATAAAAATATATAATTATTTAATGGTGGTGG
*
16047983 CATTTGTAATCAAATACTCTATATATGGTG
1 CATTTGTAATCAAATACTATATATATGGTG
16048013 GTTGTATAAT
Statistics
Matches: 246, Mismatches: 21, Indels: 21
0.85 0.07 0.07
Matches are distributed among these distances:
239 1 0.00
240 37 0.15
241 74 0.30
243 4 0.02
248 1 0.00
249 1 0.00
250 1 0.00
251 5 0.02
253 19 0.08
254 52 0.21
255 44 0.18
256 7 0.03
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.47
Consensus pattern (248 bp):
CATTTGTAATCAAATACTATATATATGGTGCTTTTTCCAATTAAATATATATAACAAAGAATTTG
GCAGCATAATAAGATTTATATAATTGTTTAAATTATATACAATTGTTTACATACTGTTTACATTA
TATATAATTGTTTAATTGTATATGATTACATCTGTTTAGATTATATATAATTGTTTATTGTTTGG
CTTTTTCAATTAAATATATATAATAAAAATATATAATTATTTAATGGTGGTGG
Found at i:16048580 original size:3 final size:3
Alignment explanation
Indices: 16048566--16048607 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
16048556 GTTTTTTGCT
16048566 TTA TTA TGTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
16048608 GCTTTTCTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:16063768 original size:29 final size:29
Alignment explanation
Indices: 16063682--16063766 Score: 72
Period size: 31 Copynumber: 2.9 Consensus size: 29
16063672 AAACATGCAA
*
16063682 AAAT-TATGCAAAACTAATCATGCGAAAAAT
1 AAATCTATGCAAAA-T-ATCATGCAAAAAAT
*
16063712 AAATC-AT--AATAA-ATAATGCAAATAAAT
1 AAATCTATGCAA-AATATCATGCAAA-AAAT
16063739 AAACTCTATGCAAAATATCATGCAAAAA
1 AAA-TCTATGCAAAATATCATGCAAAAA
16063767 TATCATAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
26 8 0.18
27 7 0.16
28 4 0.09
29 4 0.09
30 10 0.23
31 11 0.25
ACGTcount: A:0.56, C:0.13, G:0.07, T:0.24
Consensus pattern (29 bp):
AAATCTATGCAAAATATCATGCAAAAAAT
Found at i:16063776 original size:54 final size:58
Alignment explanation
Indices: 16063686--16063793 Score: 170
Period size: 54 Copynumber: 1.9 Consensus size: 58
16063676 ATGCAAAAAT
16063686 TATGCAAAACTAATCATGCGAAAAATAAATCATAATAAATAATGCAAATAAATAAACTC
1 TATGCAAAACTAATCATGCGAAAAAT-AATCATAATAAATAATGCAAATAAATAAACTC
*
16063745 TATGCAAAA-T-ATCATGC-AAAAAT-ATCATAATAAATCATGCAAATAAATA
1 TATGCAAAACTAATCATGCGAAAAATAATCATAATAAATAATGCAAATAAATA
16063794 TAATAAAAAA
Statistics
Matches: 48, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
54 25 0.52
56 6 0.12
57 7 0.15
58 1 0.02
59 9 0.19
ACGTcount: A:0.56, C:0.13, G:0.06, T:0.25
Consensus pattern (58 bp):
TATGCAAAACTAATCATGCGAAAAATAATCATAATAAATAATGCAAATAAATAAACTC
Found at i:16063781 original size:23 final size:23
Alignment explanation
Indices: 16063750--16063874 Score: 85
Period size: 25 Copynumber: 5.1 Consensus size: 23
16063740 AACTCTATGC
*
16063750 AAAATATCATGCAA-AAATATCAT
1 AAAA-ATCATGCAATAAATATAAT
16063773 AATAAATCATGCAAATAAATATAAT
1 AA-AAATCATGC-AATAAATATAAT
*
16063798 AAAAAACATGCAACT-AATCATGCAA-
1 AAAAATCATGCAA-TAAAT-AT--AAT
*
16063823 AAATATCATGCGAATAAATATAATTAT
1 AAAAATCATGC-AATAAATAT-A--AT
* *
16063850 AAAAATCACGCAAAAAATATAAT
1 AAAAATCATGCAATAAATATAAT
16063873 AA
1 AA
16063875 TAAAAATCCT
Statistics
Matches: 82, Mismatches: 8, Indels: 24
0.72 0.07 0.21
Matches are distributed among these distances:
23 18 0.22
24 16 0.20
25 23 0.28
26 16 0.20
27 9 0.11
ACGTcount: A:0.58, C:0.12, G:0.06, T:0.24
Consensus pattern (23 bp):
AAAAATCATGCAATAAATATAAT
Found at i:16063799 original size:22 final size:23
Alignment explanation
Indices: 16063755--16063810 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
16063745 TATGCAAAAT
16063755 ATCATGCAAAAATATCATAATAA
1 ATCATGCAAAAATATCATAATAA
*
16063778 ATCATGCAAATAAATATAATAA-AA
1 ATCATGC-AA-AAATATCATAATAA
*
16063802 AACATGCAA
1 ATCATGCAA
16063811 CTAATCATGC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 9 0.31
24 10 0.34
25 10 0.34
ACGTcount: A:0.59, C:0.12, G:0.05, T:0.23
Consensus pattern (23 bp):
ATCATGCAAAAATATCATAATAA
Found at i:16063843 original size:15 final size:13
Alignment explanation
Indices: 16063746--16063843 Score: 61
Period size: 13 Copynumber: 7.9 Consensus size: 13
16063736 AATAAACTCT
16063746 ATGC-AAAATATC
1 ATGCAAAAATATC
16063758 ATGCAAAAATATC
1 ATGCAAAAATATC
*
16063771 AT--AATAA-ATC
1 ATGCAAAAATATC
*
16063781 ATGCAAATAAATATA
1 ATGC-AA-AAATATC
16063796 AT--AAAAA-A-C
1 ATGCAAAAATATC
**
16063805 ATGCAACTA-ATC
1 ATGCAAAAATATC
16063817 ATGCAAAAATATC
1 ATGCAAAAATATC
16063830 ATGCGAATAAATAT
1 ATGC-AA-AAATAT
16063844 AATTATAAAA
Statistics
Matches: 66, Mismatches: 8, Indels: 21
0.69 0.08 0.22
Matches are distributed among these distances:
9 2 0.03
10 6 0.09
11 11 0.17
12 14 0.21
13 19 0.29
14 4 0.06
15 10 0.15
ACGTcount: A:0.55, C:0.13, G:0.07, T:0.24
Consensus pattern (13 bp):
ATGCAAAAATATC
Found at i:16064426 original size:17 final size:17
Alignment explanation
Indices: 16064401--16064441 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
16064391 TTTAAATTTC
* *
16064401 AAATCTAAATAAAATCA
1 AAATTTAAAAAAAATCA
*
16064418 CAATTTAAAAAAAATCA
1 AAATTTAAAAAAAATCA
16064435 AAATTTA
1 AAATTTA
16064442 TGTTATTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (17 bp):
AAATTTAAAAAAAATCA
Found at i:16064811 original size:18 final size:17
Alignment explanation
Indices: 16064781--16064826 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
16064771 AGCTTAGTAA
*
16064781 ATAACATAAATAAATGGC
1 ATAA-ATAAATAAATAGC
*
16064799 ATAAATAAGATAAATAGT
1 ATAAATAA-ATAAATAGC
16064817 ATAAATAAAT
1 ATAAATAAAT
16064827 GAGCTTAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 6 0.24
18 19 0.76
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.26
Consensus pattern (17 bp):
ATAAATAAATAAATAGC
Found at i:16068791 original size:21 final size:22
Alignment explanation
Indices: 16068767--16068816 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
16068757 TAATTAAAAT
16068767 TTTATGTTACCAAT-ATA-ATTA
1 TTTATGTTA-CAATAATATATTA
16068788 TTTATGTTACAATAATATATTA
1 TTTATGTTACAATAATATATTA
16068810 -TTATGTT
1 TTTATGTT
16068817 GTTCTTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.15
21 19 0.70
22 4 0.15
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (22 bp):
TTTATGTTACAATAATATATTA
Found at i:16068873 original size:234 final size:232
Alignment explanation
Indices: 16067969--16070959 Score: 1522
Period size: 234 Copynumber: 12.8 Consensus size: 232
16067959 AATTTATATT
* * * * * *
16067969 TTTTTCTTACTTGTTTACATTACTTATTTGTTTTTTTAATTATTATCTA-TTTT-TTATATATTT
1 TTTTTCTCACTTGTTTACATTAC-CAATT-TATTTTTAATTTTTAGCTATTTTTCTTATATATTT
* ** * * * *
16068032 ATAAAAATAATAATTAATTAAAATTTTATGTTGTCTATTTAAATATTTACGTTACAATAATATCT
64 A-CAAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATAT
** * * * * *
16068097 TTTTACAGTTGTTCTTATCTTTT-ATTACGTTTAAAATTATCACAACTTTTTCTTAGTATGTTA-
128 TTTTA-AGTTGTTCTTA-CTTTTCATTATATTTAGAATTGTCATAACTTTTT-TTAATGTGTTAT
** * * *
16068160 GGCATTTCTTA-TCCATTTTACATCAAATGATATTAATCTTTTA-A
190 GATATTTCTTACT-TATTTTACGTCAAATGATACTAA--TTTTACA
* * * * *
16068204 TTTTTTCTCACTTGTTTACGCTT-CCAATTTATTTTTTAATTTCTAACTATTTTCCTTATATATA
1 -TTTTTCTCACTTGTTTAC-ATTACCAATTTA-TTTTTAATTTTTAGCTATTTTTCTTATATATT
* * * * * ** * * * * * *
16068268 TATATATATATACAATAACAATAATTAATTAAAATTTTA-CATTGTCATCA--TA-ATTACAATA
63 TACA-AAATA-ATAATTA-ATTAA--AATT-TTATGTTACCAATATAATTATTTACGTTACAATA
* * * * * *
16068329 ATATATTTTTTACAGTTCTACTTACTTTTCATTACATTTAGAATTGTTATAATTTTTTCTTAATA
122 ATATA-TTTTTA-AGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTT-TTAATG
* ** * * * * * *
16068394 TATTACAACACTTCTTACCTATTTTA-TTCCAAAAGATACTAATTTTACG
184 TGTTATGATATTTCTTACTTATTTTACGT-CAAATGATACTAATTTTACA
* * * * * *
16068443 TTACTTCTCACTTGTTTACGTTATCAATTTATTTTTTTTATTTTTAGTTATTTTTCTTATCTATT
1 TT-TTTCTCACTTGTTTACATTACCAATTTA--TTTTTAATTTTTAGCTATTTTTCTTATATATT
* * ** * * *
16068508 TACAAGAACAATAATTAATTAAAATTTTATGTTATCAATATAATTATTTATTTTCCGATAATATC
63 TACAA-AATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATA
* * * * * * * *
16068573 TTCTTATGGTTATTTTTACTTTACACTATATTTAGAATTTTCAT-ACTTTTTCTTAATATGTTAT
127 TTTTTA-AGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTT-TTAATGTGTTAT
*
16068637 GATATTTTTTACTTATTTTACGTCAAATGATACTAATTTTACA
190 GATATTTCTTACTTATTTTACGTCAAATGATACTAATTTTACA
* * * * *
16068680 TTTGTTCTCAGTTGTTTACATTACCCATTTATTTTTAATTTATATCTATTTTTCTTAGATATTTA
1 TTT-TTCTCACTTGTTTACATTACCAATTTATTTTTAATTTTTAGCTATTTTTCTTATATATTTA
* *
16068745 CAAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTATGTTACAATAATATATTA
65 CAAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATATTT
* * * * ** *
16068810 TTATGTTGTTCTTAATTTTCATTATATTTAAAATTATCATAACTCTTTTTTAGCGTATTATGATA
130 TTAAGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACT-TTTTTTAATGTGTTATGATA
* * ** * * * *
16068875 ATTCATACCCAATTTGCATCAAATGATACTAATTTTACT
194 TTTCTTACTTATTTTACGTCAAATGATACTAATTTTACA
* * *
16068914 TTTTTCTCATTTGTTTACATTACAAAATGTGT-TTTTTAATTTATAGCTATTTTTCTTATATATT
1 TTTTTCTCACTTGTTTACATTAC-CAAT-T-TATTTTTAATTTTTAGCTATTTTTCTTATATATT
** * * *
16068978 TACAAAA-AATAATTAATT-AAATTTTACATTAACAACT-TAATTATTTACCTTATAATAAT-T-
63 TACAAAATAATAATTAATTAAAATTTTATGTTACCAA-TATAATTATTTACGTTACAATAATATA
* * ** * * *
16069038 TTTTTATTA-TTGTT-TTACCTTTAATTACGTTTAAAATTGTCATAACTTTTTCTTAGTGTATTA
127 TTTTTA--AGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTT-TTAATGTGTTA
* * * * * **
16069101 CG-TCATTTTTTA-TCCATTTTACATCAAATTATACTAATTTTATG
189 TGAT-ATTTCTTACT-TATTTTACGTCAAATGATACTAATTTTACA
* * * ** * *
16069145 TTTTTCTCACTT-TTTAATATTA-TATATTTGTTTTTCAATTTTTAAATATTTTCCTTATGTATT
1 TTTTTCTCACTTGTTT-ACATTACCA-ATTTATTTTT-AATTTTTAGCTATTTTTCTTATATATT
* * * * * * * * *
16069208 TAAAAAATAATAATTAGTTAAAATTTTATATTGCCAACATAATTATTTATGATATAATAATATCT
63 TACAAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATAT
* ** * * * **
16069273 TTTTAAGATTGTTCTTAC-CTTCTATTACGTTTAGAGTTATCATAATTTTTTTTAATGTACTATG
128 TTTTAAG-TTGTTCTTACTTTTC-ATTATATTTAGAATTGTCATAACTTTTTTTAATGTGTTATG
* * * *
16069337 A-AATTCTTTA-TTCATTTTATGCCAAATGATACTAATTTTATA
191 ATATTTC-TTACTT-ATTTTACGTCAAATGATACTAATTTTACA
** * **
16069379 TTTTT-TCAAACTTGTTTAGGTTACTAATTTATGTTTTAATTTTTTTCTATTTTTCTTATATA--
1 TTTTTCTC--ACTTGTTTACATTACCAATTTAT-TTTTAATTTTTAGCTATTTTTCTTATATATT
* * ** *
16069441 TACAAAAATAATAATTAATTAAAATTTTATATTATC-ATCATAATTATTTATATTATAATAATAT
63 TAC-AAAATAATAATTAATTAAAATTTTATGTTACCAAT-ATAATTATTTACGTTACAATAATAT
* * * * * *
16069505 ATTTGTTTACGGTTGTTTTTACTTTTTATTATATTTAAAATTGTTATAACTTTTTCTTAATATGT
126 A-TT-TTTA-AGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTT-TTAATGTGT
* * **
16069570 TATGACATATCTTACCCATTTTAC-TCTAAAAT-ATA-TCAATTTTACA
187 TATGATATTTCTTACTTATTTTACGTC--AAATGATACT-AATTTTACA
* * * * *
16069616 TTTTTTCTGACTTGTTCATATTATCAATTTATTTTTATTTTAATTTTTAGGTATTTTTCTTATAT
1 -TTTTTCTCACTTGTTTACATTACCAATTTA----T-TTTTAATTTTTAGCTATTTTTCTTATAT
* * * ** *** * *
16069681 ATTTATAGGAACAATAATTAATTAAAATTTTACATTGTTAACATAATTATTTACTTTACAATAAT
60 ATTTACA-AAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAAT
** * * ** * *
16069746 AT-TTTCTTGTGATTATTTTTACTTCCCATTACATTTAGAATTGTCATAACTTTTTCTTAATTTG
124 ATATTT-TTAAG-TTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTT-TTAATGTG
* * ** * **
16069810 TTACGATACTTCTTACCCATTTTATGTCAAATGATACTAATTTTATG
186 TTATGATATTTCTTACTTATTTTACGTCAAATGATACTAATTTTACA
* * * *
16069857 TTTGTGCTCAC---TTTACATTACCAATTTTGTTTTTTAATTTCTT-GC-ATTTTCCTTAGATAT
1 TTT-TTCTCACTTGTTTACATTACCAA-TTT-ATTTTTAATTT-TTAGCTATTTTTCTTATATAT
* * * *
16069917 TTACAAAACAATAATTAATTAAAATTTTATGTTGCCAATATAATAATTTACATTACAATAATATA
62 TTACAAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATA
* * * ** * * *
16069982 TTATTATAGTTGTTCTTACTTTCCACTATATTTAGAATTGTTTTAA-TTTTGTTAGTGTATTATG
127 TTTTTA-AGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTTTTAATGTGTTATG
* * * * * *
16070046 ACAATTCATACCTATTGTATG-CTAAATGATACT-A----A-A
191 ATATTTCTTACTTATTTTACGTC-AAATGATACTAATTTTACA
* *
16070082 -----CT---TT-TTTAC-TTACCAATATGT-TTTTTCATTTTTAGCTATTTTT-TTATATGTTT
1 TTTTTCTCACTTGTTTACATTACCAAT-T-TATTTTTAATTTTTAGCTATTTTTCTTATATATTT
* * * * *
16070135 AC-AAA-AATAATTAATTAAAAATTTAAGTTAGCAACT-TAATTATTTACGTTATAATAAT-TTT
64 ACAAAATAATAATTAATTAAAATTTTATGTTACCAA-TATAATTATTTACGTTACAATAATATAT
* * * * * * * * * * ** *
16070196 TATTTAAAATTGTTCTAACATTTAAATATGTTTAGACTTGTGACAACTTTTTTTTAGTGTGCAAC
128 T-TTT-AAGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAAC-TTTTTTTAATGTGTTAT
* * * **
16070261 GTTACTTT-TTATCTTTTTTGTAC-T-AAATGATACTCATTTTATG
190 GATA-TTTCTTA-CTTATTT-TACGTCAAATGATACTAATTTTACA
* ** * * * *
16070304 GTTTTCTTGCTT-TCTTACGTTGCCTATTTATTTTTTAATTTTTAG-T-CTTTTC---TATATTT
1 TTTTTCTCACTTGT-TTACATTACCAATTTA-TTTTTAATTTTTAGCTATTTTTCTTATATATTT
* * * * * * *
16070363 AAAAAATAATAATTAGTTAAAATTTTATGTTACCAACATCATTATTTACATTACATTAATGT-TT
64 ACAAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATATT
* ** * * * * *
16070427 TCATACAACTATTCTTACCTTTT-ATTATATTTAAAATTATCATAATTATTTTTTAGTGTGTTAT
129 T-TTA-AGTTGTTCTTA-CTTTTCATTATATTTAGAATTGTCATAACT-TTTTTTAATGTGTTAT
* ** *
16070491 GATATTTTTTACTTATTTTACGTTGAATGACACTAATTTTACA
190 GATATTTCTTACTTATTTTACGTCAAATGATACTAATTTTACA
* * * *
16070534 TTTTTTTCACACTTGTTTACATTACTAATTTACTTTTTAATTTATAGCTATTATATATATATATA
1 --TTTTTCTCACTTGTTTACATTACCAATTTA-TTTTTAATTTTTAGCTATT-T-T-TCT-TATA
* * * ** * *
16070599 TATATACACAAAACAATAATTAATT-AAATTTTATATTGTC-TTCATAATTATTTAGGTTACAAT
59 TAT-T-TACAAAATAATAATTAATTAAAATTTTATGTTACCAAT-ATAATTATTTACGTTACAAT
* * * * * * * *
16070662 AATATGTTTTTAAGTTTATTCTTATTTTTTAATACATTTAGAATTGTTATAATTCTTTTTTAATG
121 AATATATTTTTAAG-TTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACT-TTTTTTAATG
* * * ** * *
16070727 TGTTATGACAATTCTTA-TCTATACTTACACCAAATGATACAAATATTACA
184 TGTTATGATATTTCTTACT-TAT-TTTACGTCAAATGATACTAATTTTACA
* * * ** * * * *
16070777 TTTTTTTTACTTATTTATGTTA--TATATATTTTTTATTTATTAGATATTTTTCTTATATATTTA
1 TTTTTCTCACTTGTTTACATTACCAATTTATTTTTAATTT-TTAGCTATTTTTCTTATATATTTA
* * ** ** *
16070840 TAGGAATAATAATTAATTAAAATTTTATGTGGCCAACT-TAATTATTTACGTTTTAATAATATCT
65 CA-AAATAATAATTAATTAAAATTTTATGTTACCAA-TATAATTATTTACGTTACAATAATATAT
* * * * *
16070904 TTTTAAAGTTATTCTTA-TATTTTATTATTTTTAAAATTATCATAACTCTTTTTTAA
128 TTTT-AAGTTGTTCTTACT-TTTCATTATATTTAGAATTGTCATAACT-TTTTTTAA
16070960 ATGTTACAGC
Statistics
Matches: 2125, Mismatches: 466, Indels: 329
0.73 0.16 0.11
Matches are distributed among these distances:
213 3 0.00
214 74 0.03
215 7 0.00
216 48 0.02
217 20 0.01
218 8 0.00
219 2 0.00
221 1 0.00
226 1 0.00
227 2 0.00
228 11 0.01
229 23 0.01
230 150 0.07
231 145 0.07
232 96 0.05
233 177 0.08
234 265 0.12
235 253 0.12
236 88 0.04
237 145 0.07
238 103 0.05
239 108 0.05
240 65 0.03
241 146 0.07
242 96 0.05
243 87 0.04
244 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.52
Consensus pattern (232 bp):
TTTTTCTCACTTGTTTACATTACCAATTTATTTTTAATTTTTAGCTATTTTTCTTATATATTTAC
AAAATAATAATTAATTAAAATTTTATGTTACCAATATAATTATTTACGTTACAATAATATATTTT
TAAGTTGTTCTTACTTTTCATTATATTTAGAATTGTCATAACTTTTTTTAATGTGTTATGATATT
TCTTACTTATTTTACGTCAAATGATACTAATTTTACA
Found at i:16069138 original size:465 final size:463
Alignment explanation
Indices: 16067959--16069946 Score: 1388
Period size: 465 Copynumber: 4.2 Consensus size: 463
16067949 AATAATACAA
* * ** * *
16067959 AATTTATATTTTTTTCTTACTTGTTTACATTAC-TTATTTGTTTTTTTAATTATTATCTA-TTTT
1 AATTT-TACTTTTTTCTCACTTGTTTACATTACAAAATTTG-TTTTTTAATTTTTAGCTATTTTT
* * * * * * * **
16068022 -TTATATATTTATAAAAATAATAATTAATTAAAATTTTATGTTGTCTATTTAAATATTTACGTTA
64 CTTATATATTTA-CAAAACAATAATTAATTAAAATTTTATATTATCAACTTAATTATTTATATTA
* * * * ** * *
16068086 CAATAATATCTTTTTA-CAGTTGTTCTTATCTTTTATTACGTTTAAAATTATCACAACTTTTTCT
128 TAATAAT-T-TTTTTATTA-TTGTT-TTACCTTTAATTATATTTAAAATTGTCATAACTTTTTCT
* * * * *
16068150 TAGTATGTTA-GGCATTTCTTATCCATTTTACATCAAATGATATTAATCTTTTA-ATTTTTTCTC
189 TAATATGTTATGTCATTTTTTA-CCATTTTAC-TCAAATTATACTAA--TTTTACA-TTTTTCTC
** * * * * *
16068213 ACTTGTTTACGCTT-CCAATTTATTTTTTAATTTCTAACTATTTTCCTTATATATATATATATAT
249 ACTTGTTTA-TATTATCAATTTA-TTTTTAATTTTTAAATATTTTTC-T-TAGATAT-T-TA-A-
* * *
16068277 ATACAATAACAATAATTAATTAAAATTTTACATTG---TCATCA-TA---A--TTACAATAATAT
306 A-A-AAT---AATAATTAATTAAAATTTTATATTGCCAACATAATTATTTATGTTACAATAATAT
* * * * * * * * *
16068333 ATT-TTTTACAGTTCTACTTACTTTTCATTACATTTAGAATTGTTATAATTTTTTCTTAATATAT
366 ATTATTAT-GA-TTGTTCTTAATTTTCATTACATTTAGAATTATCATAACTTTTT-TTAATGTAT
** * * * *
16068397 TACAACACTTCTTA-CCTATTTTATTCCAAAAGATACT
428 TATGATAATTCTTACCCAATTTTA-T-CAAATGATACT
** * * * *
16068434 AATTTTACGTTACTTCTCACTTGTTTACGTTATC--AATTTATTTTTTTTATTTTTAGTTATTTT
1 AATTTTAC-TTTTTTCTCACTTGTTTACATTA-CAAAATTT-GTTTTTTAATTTTTAGCTATTTT
* * *
16068497 TCTTATCTATTTACAAGAACAATAATTAATTAAAATTTTATGTTATCAA-TATAATTATTTATTT
63 TCTTATATATTTACAA-AACAATAATTAATTAAAATTTTATATTATCAACT-TAATTATTTATAT
* * ** * * * *
16068561 TCCGATAAT-ATCTTCTTATGGTTATTTTTA-CTTTACACTATATTTAGAATTTTCAT-ACTTTT
126 T---ATAATAATTTTTTTATTATT-GTTTTACCTTTA-ATTATATTTAAAATTGTCATAACTTTT
* *
16068623 TCTTAATATGTTATGAT-ATTTTTTACTTATTTTACGTCAAATGATACTAATTTTACATTTGTTC
186 TCTTAATATGTTATG-TCATTTTTTAC-CATTTTAC-TCAAATTATACTAATTTTACATTT-TTC
* * * * * ** *
16068687 TCAGTTGTTTACATTACCCATTTATTTTTAATTTATATCTATTTTTCTTAGATATTTACAAAATA
247 TCACTTGTTTATATTATCAATTTATTTTTAATTTTTAAATATTTTTCTTAGATATTTAAAAAATA
* * *
16068752 ATAATTAATTAAAATTTTATGTTACCAATATAATTATTTATGTTACAATAATATATTATTATG-T
312 ATAATTAATTAAAATTTTATATTGCCAACATAATTATTTATGTTACAATAATATATTATTATGAT
* * ** *
16068816 TGTTCTTAATTTTCATTATATTTAAAATTATCATAACTCTTTTTTAGCGTATTATGATAATTCAT
377 TGTTCTTAATTTTCATTACATTTAGAATTATCATAACT-TTTTTTAATGTATTATGATAATTCTT
*
16068881 ACCCAATTTGCATCAAATGATACT
441 ACCCAATTT-TATCAAATGATACT
* * *
16068905 AATTTTACTTTTTTCTCATTTGTTTACATTACAAAATGTGTTTTTTAATTTATAGCTATTTTTCT
1 AATTTTACTTTTTTCTCACTTGTTTACATTACAAAATTTGTTTTTTAATTTTTAGCTATTTTTCT
* * **
16068970 TATATATTTACAAAA-AATAATTAATT-AAATTTTACATTAACAACTTAATTATTTACCTTATAA
66 TATATATTTACAAAACAATAATTAATTAAAATTTTATATTATCAACTTAATTATTTATATTATAA
** * * *
16069033 TAATTTTTTTATTATTGTTTTACCTTTAATTACGTTTAAAATTGTCATAACTTTTTCTTAGTGTA
131 TAATTTTTTTATTATTGTTTTACCTTTAATTATATTTAAAATTGTCATAACTTTTTCTTAATATG
* **
16069098 TTACGTCATTTTTTATCCATTTTACATCAAATTATACTAATTTTATGTTTTTCTCACTT-TTTAA
196 TTATGTCATTTTTTA-CCATTTTAC-TCAAATTATACTAATTTTACATTTTTCTCACTTGTTT-A
* * *
16069162 TATTAT-ATATTTGTTTTTCAATTTTTAAATATTTTCCTTATG-TATTTAAAAAATAATAATTAG
258 TATTATCA-ATTTATTTTT-AATTTTTAAATATTTTTCTTA-GATATTTAAAAAATAATAATTAA
* * * * *
16069225 TTAAAATTTTATATTGCCAACATAATTATTTATGATATAATAATATCTTTTTAAGATTGTTCTT-
320 TTAAAATTTTATATTGCCAACATAATTATTTATGTTACAATAATATATTATTATGATTGTTCTTA
** * * * * **
16069289 ACCTTCTATTACGTTTAGAGTTATCATAATTTTTTTTAATGTACTATGA-AATTCTTTATTC-AT
385 ATTTTC-ATTACATTTAGAATTATCATAACTTTTTTTAATGTATTATGATAATTC-TTACCCAAT
16069352 TTTATGCCAAATGATACT
448 TTTAT--CAAATGATACT
* ** ** * * * **
16069370 AATTTTATATTTTTTCAAACTTGTTTAGGTTAC-TAATTTATGTTTTAATTTTTTTCTATTTTTC
1 AATTTTA-CTTTTTTCTCACTTGTTTACATTACAAAATTTGTTTTTTAATTTTTAGCTATTTTTC
* * *
16069434 TTATATA--TACAAAAATAATAATTAATTAAAATTTTATATTATCATCATAATTATTTATATTAT
65 TTATATATTTAC-AAAACAATAATTAATTAAAATTTTATATTATCAACTTAATTATTTATATTAT
* * * *
16069497 AATAATATATTTGT-TTACGGTTGTTTTTACTTTTTATTATATTTAAAATTGTTATAACTTTTTC
129 AATAAT-T-TTTTTATTA---TTG-TTTTACCTTTAATTATATTTAAAATTGTCATAACTTTTTC
* * * * *
16069561 TTAATATGTTATGACATATCTTACCCATTTTACTCTAAAATATA-TCAATTTTACATTTTTTCTG
188 TTAATATGTTATGTCATTTTTTA-CCATTTTACTC-AAATTATACT-AATTTTACA-TTTTTCTC
* ** * **
16069625 ACTTGTTCATATTATCAATTTATTTTTATTTTAATTTTTAGGTATTTTTCTTATATATTTATAGG
249 ACTTGTTTATATTATCAATTTA----T-TTTTAATTTTTAAATATTTTTCTTAGATATTTA-AAA
* * ** * *
16069690 AACAATAATTAATTAAAATTTTACATTGTTAACATAATTATTTACT-TTACAATAATATTTTCTT
308 AATAATAATTAATTAAAATTTTATATTGCCAACATAATTATTTA-TGTTACAATAATATATTATT
* * * * ** * * * * *
16069754 GTGATTATTTTTACTTCCCATTACATTTAGAATTGTCATAACTTTTTCTTAATTTGTTACGATAC
372 ATGATTGTTCTTAATTTTCATTACATTTAGAATTATCATAACTTTTT-TTAATGTATTATGATAA
16069819 TTCTTACCC-ATTTTATGTCAAATGATACT
436 TTCTTACCCAATTTTA--TCAAATGATACT
* * *
16069848 AATTTTA-TGTTTGTGCTCAC---TTTACATTACCAATTTTGTTTTTTAATTTCTT-GC-ATTTT
1 AATTTTACT-TTT-TTCTCACTTGTTTACATTACAAAATTTGTTTTTTAATTT-TTAGCTATTTT
* *
16069907 CCTTAGATATTTACAAAACAATAATTAATTAAAATTTTAT
63 TCTTATATATTTACAAAACAATAATTAATTAAAATTTTAT
16069947 GTTGCCAATA
Statistics
Matches: 1202, Mismatches: 228, Indels: 165
0.75 0.14 0.10
Matches are distributed among these distances:
463 8 0.01
464 83 0.07
465 233 0.19
466 83 0.07
467 36 0.03
468 19 0.02
469 4 0.00
470 59 0.05
471 145 0.12
472 34 0.03
473 25 0.02
474 6 0.00
475 92 0.08
476 118 0.10
477 200 0.17
478 46 0.04
479 6 0.00
480 5 0.00
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (463 bp):
AATTTTACTTTTTTCTCACTTGTTTACATTACAAAATTTGTTTTTTAATTTTTAGCTATTTTTCT
TATATATTTACAAAACAATAATTAATTAAAATTTTATATTATCAACTTAATTATTTATATTATAA
TAATTTTTTTATTATTGTTTTACCTTTAATTATATTTAAAATTGTCATAACTTTTTCTTAATATG
TTATGTCATTTTTTACCATTTTACTCAAATTATACTAATTTTACATTTTTCTCACTTGTTTATAT
TATCAATTTATTTTTAATTTTTAAATATTTTTCTTAGATATTTAAAAAATAATAATTAATTAAAA
TTTTATATTGCCAACATAATTATTTATGTTACAATAATATATTATTATGATTGTTCTTAATTTTC
ATTACATTTAGAATTATCATAACTTTTTTTAATGTATTATGATAATTCTTACCCAATTTTATCAA
ATGATACT
Found at i:16069684 original size:23 final size:22
Alignment explanation
Indices: 16069645--16069689 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
16069635 ATTATCAATT
* *
16069645 TATTTTTATTTTAATTTTTAGG
1 TATTTTTATTATAATTTATAGG
*
16069667 TATTTTTCTTATATATTTATAGG
1 TATTTTTATTATA-ATTTATAGG
16069690 AACAATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.24, C:0.02, G:0.09, T:0.64
Consensus pattern (22 bp):
TATTTTTATTATAATTTATAGG
Found at i:16072042 original size:27 final size:27
Alignment explanation
Indices: 16072012--16072074 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 27
16072002 AATTTGATTT
*
16072012 ATAAAATTACG-ATAAAA-TATAATTAAA
1 ATAATATTACGAATAAAATTA-AATT-AA
*
16072039 ATAATTTTACGAATAAAATTAAATTAA
1 ATAATATTACGAATAAAATTAAATTAA
16072066 ATAATATTA
1 ATAATATTA
16072075 TTTTATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 19 0.61
28 10 0.32
29 2 0.06
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.35
Consensus pattern (27 bp):
ATAATATTACGAATAAAATTAAATTAA
Found at i:16072134 original size:21 final size:19
Alignment explanation
Indices: 16072109--16072147 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
16072099 AAAATTAAGA
16072109 TAAAATAATTTATTTATTAAT
1 TAAAATAATTT-TTT-TTAAT
*
16072130 TAAAATTATTTTTTTTAA
1 TAAAATAATTTTTTTTAA
16072148 AATTATGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 10 0.59
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (19 bp):
TAAAATAATTTTTTTTAAT
Found at i:16072259 original size:130 final size:130
Alignment explanation
Indices: 16072013--16072270 Score: 349
Period size: 131 Copynumber: 2.0 Consensus size: 130
16072003 ATTTGATTTA
* * * * **
16072013 TAAAATTACGATAAAATATAATTAAAATAATTTTACGAATAAAATTAAATTAAATAATATTATTT
1 TAAAATTACGATAAAATATAATTAAAATAATATTACAAATAAAATAAAATTAAATAATATCATCA
* * *
16072078 TATTTTATATTTGAAATATATAAAATTAAGATAAAATAATTTATTTATTAATTAAAATTATTTTT
66 TATCTTACATTTGAAATATACAAAATTAAGATAAAATAATTTATTTATTAATT-AAATT-TTTTT
16072143 TT
129 TT
* * *
16072145 TAAAATTATGATAAAATGTAA-TAAAATAATATTATAAATAAAATAAAATTAAATAATATCATCA
1 TAAAATTACGATAAAATATAATTAAAATAATATTACAAATAAAATAAAATTAAATAATATCATCA
* * *
16072209 TATCTTACGTTT-ATATGTACAAAATTAAGATAAAATAATTTATTTATTAATTAAATTTTTTT
66 TATCTTACATTTGAAATATACAAAATTAAGATAAAATAATTTATTTATTAATTAAATTTTTTT
16072271 CAAAAAATTT
Statistics
Matches: 111, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 5 0.05
129 5 0.05
130 37 0.33
131 45 0.41
132 19 0.17
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (130 bp):
TAAAATTACGATAAAATATAATTAAAATAATATTACAAATAAAATAAAATTAAATAATATCATCA
TATCTTACATTTGAAATATACAAAATTAAGATAAAATAATTTATTTATTAATTAAATTTTTTTTT
Found at i:16072396 original size:24 final size:25
Alignment explanation
Indices: 16072360--16072416 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 25
16072350 AAAATAATAT
* *
16072360 TTTTATTTTAAAAA-AATTAAATTA
1 TTTTATATAAAAAATAATTAAATTA
* *
16072384 TTTTATATAAAAAATTAATTAATTTT
1 TTTTATATAAAAAA-TAATTAAATTA
16072410 TTTTATA
1 TTTTATA
16072417 ATTTTAATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 12 0.44
26 15 0.56
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTTATATAAAAAATAATTAAATTA
Found at i:16073280 original size:3 final size:3
Alignment explanation
Indices: 16073268--16073316 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
16073258 AAAAAAGATG
*
16073268 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
16073316 A
1 A
16073317 CCTAGACTCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:16073725 original size:3 final size:3
Alignment explanation
Indices: 16073717--16073750 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
16073707 TCCCATGTTC
16073717 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
16073751 AGACTACTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:16080517 original size:27 final size:28
Alignment explanation
Indices: 16080482--16080537 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 28
16080472 ATATATAAAT
* *
16080482 TTTTAAAATATGATTTGAAT-TAATTTTA
1 TTTTAAAAT-TAATTTGAATCGAATTTTA
16080510 TTTT-AAATTAATTTGAATCGAATTTTA
1 TTTTAAAATTAATTTGAATCGAATTTTA
16080537 T
1 T
16080538 CAATTAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.36
27 12 0.48
28 4 0.16
ACGTcount: A:0.38, C:0.02, G:0.07, T:0.54
Consensus pattern (28 bp):
TTTTAAAATTAATTTGAATCGAATTTTA
Found at i:16080589 original size:21 final size:21
Alignment explanation
Indices: 16080564--16080604 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
16080554 AGTTAATTAA
*
16080564 TTTTTTAAATTTAATATTTTG
1 TTTTTTAAATATAATATTTTG
* *
16080585 TTTTTTTAATATATTATTTT
1 TTTTTTAAATATAATATTTT
16080605 AGAGTAATCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (21 bp):
TTTTTTAAATATAATATTTTG
Found at i:16081173 original size:13 final size:13
Alignment explanation
Indices: 16081138--16081173 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
16081128 ATCTTTTATT
*
16081138 TTTTAAAAATATA
1 TTTTAAAAATACA
16081151 TTTTATAAAATACA
1 TTTTA-AAAATACA
16081165 TTTTAAAAA
1 TTTTAAAAA
16081174 AGAAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTTAAAAATACA
Found at i:16084835 original size:19 final size:18
Alignment explanation
Indices: 16084811--16084871 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
16084801 CAAAATACCT
16084811 TAAACTGTAGATCAAACCC
1 TAAACTGTAG-TCAAACCC
* *
16084830 TAAACTCTAGGTTAAA-CC
1 TAAACTGTA-GTCAAACCC
*
16084848 TAAACATGAAGTCAAACCC
1 TAAAC-TGTAGTCAAACCC
16084867 TAAAC
1 TAAAC
16084872 CCAAACCTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
18 12 0.35
19 21 0.62
20 1 0.03
ACGTcount: A:0.44, C:0.25, G:0.10, T:0.21
Consensus pattern (18 bp):
TAAACTGTAGTCAAACCC
Found at i:16087343 original size:21 final size:21
Alignment explanation
Indices: 16087285--16087343 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 21
16087275 ATTGACAGAT
*
16087285 TATTTTATATATATATATTTAAC
1 TATTTTAT-TATAT-TATATAAC
16087308 TATTTTAATTA-ATTATATAATC
1 TATTTT-ATTATATTATATAA-C
16087330 TA-TTTATTATATTA
1 TATTTTATTATATTA
16087344 ATCGAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
20 4 0.12
21 13 0.41
22 5 0.16
23 8 0.25
24 2 0.06
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (21 bp):
TATTTTATTATATTATATAAC
Found at i:16089713 original size:10 final size:11
Alignment explanation
Indices: 16089688--16089721 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
16089678 GGAAGATGGT
*
16089688 AAATTTGAACA
1 AAATTTCAACA
16089699 AAATTTCAA-A
1 AAATTTCAACA
16089709 AAATTTCAACA
1 AAATTTCAACA
16089720 AA
1 AA
16089722 CTTGTGCTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.59, C:0.12, G:0.03, T:0.26
Consensus pattern (11 bp):
AAATTTCAACA
Found at i:16108759 original size:22 final size:22
Alignment explanation
Indices: 16108734--16108781 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
16108724 GGATCAAATT
16108734 TTTGGTTCCCAAAAATCAAGCA
1 TTTGGTTCCCAAAAATCAAGCA
** * *
16108756 TTTGGTTTTCAAAATTCAAGTA
1 TTTGGTTCCCAAAAATCAAGCA
16108778 TTTG
1 TTTG
16108782 ATGCTTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.40
Consensus pattern (22 bp):
TTTGGTTCCCAAAAATCAAGCA
Found at i:16113456 original size:42 final size:42
Alignment explanation
Indices: 16113353--16113562 Score: 183
Period size: 42 Copynumber: 5.2 Consensus size: 42
16113343 TTTCCCTTCC
* *
16113353 CTTTTTTATATGTTTGGC-TTTTT-TCTT-TCTAGCCTTTCTTTT
1 CTTTTTT-TATG-TTGGCTTTTTTATTTTCTCTAGCCCTTC-TTT
*
16113395 CCTTTTTTATGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTT
1 CTTTTTTTATGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTT
* *
16113437 CTTTTTTTATGTTAGCTTTTTTATTTTCTCTAG--C--CATT
1 CTTTTTTTATGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTT
* *
16113475 -TTTTTTTACGTTGGCTTCTTTT-TTTTCTCTAGCCTTTCTTT
1 CTTTTTTTATGTTGGCTT-TTTTATTTTCTCTAGCCCTTCTTT
** ** *
16113516 C-TTTTTTACATTGGCTTCCTTA--TTCTCTAGCCCTTTTTT
1 CTTTTTTTATGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTT
*
16113555 TTTTTTTT
1 CTTTTTTT
16113563 TTTTACATTT
Statistics
Matches: 141, Mismatches: 16, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
37 25 0.18
38 7 0.05
39 15 0.11
40 14 0.10
41 27 0.19
42 43 0.30
43 10 0.07
ACGTcount: A:0.08, C:0.19, G:0.09, T:0.64
Consensus pattern (42 bp):
CTTTTTTTATGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTT
Found at i:16113513 original size:20 final size:19
Alignment explanation
Indices: 16113433--16113521 Score: 53
Period size: 18 Copynumber: 4.7 Consensus size: 19
16113423 TCTAGCCCTT
*
16113433 CTTTCTTTTTTTATGTTAG-
1 CTTTCTTTTTTT-TCTTAGC
*
16113452 CTTT-TTTATTTTCTCTAGC
1 CTTTCTTTTTTTTCT-TAGC
* * *
16113471 CATT-TTTTTTTACGTT-GG
1 CTTTCTTTTTTTTC-TTAGC
16113489 C-TTCTTTTTTTTCTCTAGC
1 CTTTCTTTTTTTTCT-TAGC
16113508 CTTTCTTTCTTTTT
1 CTTTCTTT-TTTTT
16113522 TACATTGGCT
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
17 5 0.09
18 20 0.37
19 17 0.31
20 7 0.13
21 5 0.09
ACGTcount: A:0.08, C:0.18, G:0.08, T:0.66
Consensus pattern (19 bp):
CTTTCTTTTTTTTCTTAGC
Found at i:16113560 original size:79 final size:78
Alignment explanation
Indices: 16113397--16113557 Score: 211
Period size: 79 Copynumber: 2.1 Consensus size: 78
16113387 TTTCTTTTCC
* ** **
16113397 TTTTTTATGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTTCTTTTTTTATGTTAGCTTTTTTATT
1 TTTTTTACGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTTCTTTTTTTACATTAGCTTCCTTA-T
16113462 TTCTCTAGCCATTT
65 TTCTCTAGCCATTT
* *
16113476 TTTTTTACGTTGGCTTCTTTT-TTTTCTCTAGCCTTTCTTTC-TTTTTTACATTGGCTTCCTTA-
1 TTTTTTACGTTGGCTT-TTTTATTTTCTCTAGCCCTTCTTTCTTTTTTTACATTAGCTTCCTTAT
*
16113538 TTCTCTAGCCCTTT
65 TTCTCTAGCCATTT
16113552 TTTTTT
1 TTTTTT
16113558 TTTTTTTTTA
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
76 19 0.26
78 16 0.22
79 34 0.47
80 4 0.05
ACGTcount: A:0.09, C:0.19, G:0.09, T:0.63
Consensus pattern (78 bp):
TTTTTTACGTTGGCTTTTTTATTTTCTCTAGCCCTTCTTTCTTTTTTTACATTAGCTTCCTTATT
TCTCTAGCCATTT
Found at i:16113769 original size:56 final size:56
Alignment explanation
Indices: 16113699--16113809 Score: 154
Period size: 56 Copynumber: 2.0 Consensus size: 56
16113689 TATCTTGCTT
16113699 TTGTTTTACATTGGCTCTCTTCTTTTCTTA-CCTT-TCAGCCCTCTTCTAGCTTTTTC
1 TTGTTTTACATTGGCTCTCTTCTTTTC-TAGCCTTCT-AGCCCTCTTCTAGCTTTTTC
** * *
16113755 TTGTTTTATGTTGGCTCTTTTCTTTTCTAGCCTTCTAGCCCTCTTTTAGCTTTTT
1 TTGTTTTACATTGGCTCTCTTCTTTTCTAGCCTTCTAGCCCTCTTCTAGCTTTTT
16113810 GAACCTTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 2 0.04
56 46 0.94
57 1 0.02
ACGTcount: A:0.08, C:0.25, G:0.11, T:0.56
Consensus pattern (56 bp):
TTGTTTTACATTGGCTCTCTTCTTTTCTAGCCTTCTAGCCCTCTTCTAGCTTTTTC
Found at i:16114813 original size:37 final size:37
Alignment explanation
Indices: 16114770--16114868 Score: 101
Period size: 37 Copynumber: 2.7 Consensus size: 37
16114760 AAAAATTTTA
* * *
16114770 TTTGAAAATTGCTTCCCCTAAATAGAGATTTTGAAAT
1 TTTGAAAATAGCTTCCCCTAAATAGAGACTTTGAAAC
* * * *
16114807 TTTGAAAATAACTCCCCCTAAACAGAGGCTTTGAAAC
1 TTTGAAAATAGCTTCCCCTAAATAGAGACTTTGAAAC
* *
16114844 TTTAAAAATGGCTTTCCCC-AAATAG
1 TTTGAAAATAGC-TTCCCCTAAATAG
16114869 GAAAATGGCT
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
37 44 0.90
38 5 0.10
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.31
Consensus pattern (37 bp):
TTTGAAAATAGCTTCCCCTAAATAGAGACTTTGAAAC
Found at i:16114888 original size:22 final size:22
Alignment explanation
Indices: 16114848--16114889 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
16114838 TGAAACTTTA
*
16114848 AAAATGGCTTTCCCCAAATAGG
1 AAAATGGCTTCCCCCAAATAGG
16114870 AAAATGGC-TCCCCCTAAATA
1 AAAATGGCTTCCCCC-AAATA
16114890 AAGGCTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.26, G:0.14, T:0.21
Consensus pattern (22 bp):
AAAATGGCTTCCCCCAAATAGG
Found at i:16114926 original size:37 final size:37
Alignment explanation
Indices: 16114877--16114983 Score: 101
Period size: 36 Copynumber: 2.9 Consensus size: 37
16114867 AGGAAAATGG
16114877 CTCC-CCCTAAATAAAGGCTTTGAAACTTTGAAAACAA
1 CTCCTCCC-AAATAAAGGCTTTGAAACTTTGAAAACAA
* * ***
16114914 CTCCTCCCAAATAGAGG-TTTGAAACATTGAAAATGG
1 CTCCTCCCAAATAAAGGCTTTGAAACTTTGAAAACAA
* * * * *
16114950 CTCATCGCAAACAAAAGCTTTGAAACTTTAAAAA
1 CTCCTCCCAAATAAAGGCTTTGAAACTTTGAAAA
16114984 TTTAAAATGT
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
36 27 0.48
37 26 0.46
38 3 0.05
ACGTcount: A:0.41, C:0.21, G:0.13, T:0.24
Consensus pattern (37 bp):
CTCCTCCCAAATAAAGGCTTTGAAACTTTGAAAACAA
Found at i:16115097 original size:105 final size:105
Alignment explanation
Indices: 16114969--16115194 Score: 310
Period size: 105 Copynumber: 2.2 Consensus size: 105
16114959 AACAAAAGCT
* * * * *
16114969 TTGAAACTTTAAAAATTTAAAATGTTTTGCCCAAAGGTCTTAGAGATTAGGCCTGGAGGTCTTAC
1 TTGAAACTTTAAAAATTCAAAATGGTTTGCCCAAAGATCTTAGAGATTAGACCTAGAGGTCTTAC
* * *
16115034 AAATCTCAAAATCTTTGAATACGTC-TCTCAATCAGAGGCA
66 AAATCTCAAAATCTGTGAATAC-TCATCCCAATCAGAGACA
* ** * *
16115074 TTGAAACATTAAAAATTCAAAATGGTTTGCTTAGAGATCTTAGAGATTATACCTAGAGGTCTTAC
1 TTGAAACTTTAAAAATTCAAAATGGTTTGCCCAAAGATCTTAGAGATTAGACCTAGAGGTCTTAC
*
16115139 AAATCTCAAAATCTGTGAATACTCATCCCAATTAGAGACA
66 AAATCTCAAAATCTGTGAATACTCATCCCAATCAGAGACA
16115179 TTGAAACTTTAAAAAT
1 TTGAAACTTTAAAAAT
16115195 GGCTCCCCCC
Statistics
Matches: 105, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
104 2 0.02
105 103 0.98
ACGTcount: A:0.38, C:0.16, G:0.15, T:0.31
Consensus pattern (105 bp):
TTGAAACTTTAAAAATTCAAAATGGTTTGCCCAAAGATCTTAGAGATTAGACCTAGAGGTCTTAC
AAATCTCAAAATCTGTGAATACTCATCCCAATCAGAGACA
Found at i:16116081 original size:31 final size:32
Alignment explanation
Indices: 16116020--16116081 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
16116010 AAATGCAAGC
*
16116020 AATGTAAATGCAAATGTCTTTTTTTATGATGT
1 AATGTAAATGCAAATGTCTTTTCTTATGATGT
*
16116052 AATGTGAATGCAAATGTC-TTTCTTATGATG
1 AATGTAAATGCAAATGTCTTTTCTTATGATG
16116082 CACATGCAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
31 11 0.39
32 17 0.61
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.44
Consensus pattern (32 bp):
AATGTAAATGCAAATGTCTTTTCTTATGATGT
Found at i:16116151 original size:43 final size:44
Alignment explanation
Indices: 16116096--16116194 Score: 119
Period size: 47 Copynumber: 2.2 Consensus size: 44
16116086 TGCAAGTGCG
* * *
16116096 AATGCAATTGATGCAAATGTGAAT-ATCTTTTTTTTGTGATGCA
1 AATGCAAGTGATGCAAATGTGAATAATCTCTTTTTTATGATGCA
* *
16116139 AATGCAAGTGATGTAAATGTGAATGCAAATGTCTTTTTTATGATGCA
1 AATGCAAGTGATGCAAATGTGAAT---AATCTCTTTTTTATGATGCA
16116186 AATGCAAGT
1 AATGCAAGT
16116195 ACAAATATAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
43 22 0.47
47 25 0.53
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.37
Consensus pattern (44 bp):
AATGCAAGTGATGCAAATGTGAATAATCTCTTTTTTATGATGCA
Found at i:16116165 original size:102 final size:100
Alignment explanation
Indices: 16116046--16116243 Score: 306
Period size: 102 Copynumber: 2.0 Consensus size: 100
16116036 TCTTTTTTTA
* * * * *
16116046 TGATGTAATGTGAATGCAAATGTCTTTCTTATGATGCACATGCAAGTGCGAATGCAATTGATGCA
1 TGATGTAATGTGAATGCAAATGTCTTTCTTATGATGCAAATGCAAGTACAAATACAAGTGATGCA
16116111 AATGTGAATATCTTTTTTTTGTGATGCAAATGCAAG
66 AATGTGAATATC-TTTTTTTGTGATGCAAATGCAAG
* *
16116147 TGATGTAAATGTGAATGCAAATGTCTTTTTTATGATGCAAATGCAAGTACAAATATAAGTGATGC
1 TGATGT-AATGTGAATGCAAATGTCTTTCTTATGATGCAAATGCAAGTACAAATACAAGTGATGC
*
16116212 AAATGTGAATGTCTTTTTTTGTGATGCAAATG
65 AAATGTGAATATCTTTTTTTGTGATGCAAATG
16116244 TGAATGCAAA
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 25 0.28
102 63 0.72
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.36
Consensus pattern (100 bp):
TGATGTAATGTGAATGCAAATGTCTTTCTTATGATGCAAATGCAAGTACAAATACAAGTGATGCA
AATGTGAATATCTTTTTTTGTGATGCAAATGCAAG
Found at i:16116212 original size:47 final size:47
Alignment explanation
Indices: 16116125--16116217 Score: 118
Period size: 47 Copynumber: 2.0 Consensus size: 47
16116115 TGAATATCTT
* * **
16116125 TTTTTTGTGATGCAAATGCAAGTGATGTAAATGTGAATGCAAATGTC
1 TTTTTTATGATGCAAATGCAAGTCAAATAAATGTGAATGCAAATGTC
16116172 TTTTTTATGATGCAAATGCAAGTACAAATATAA-GTG-ATGCAAATGT
1 TTTTTTATGATGCAAATGCAAGT-CAAATA-AATGTGAATGCAAATGT
16116218 GAATGTCTTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
47 32 0.80
48 6 0.15
49 2 0.05
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.35
Consensus pattern (47 bp):
TTTTTTATGATGCAAATGCAAGTCAAATAAATGTGAATGCAAATGTC
Found at i:16116245 original size:86 final size:86
Alignment explanation
Indices: 16116146--16116760 Score: 506
Period size: 86 Copynumber: 7.0 Consensus size: 86
16116136 GCAAATGCAA
* * * ** *
16116146 GTGATGTAAATGTGAATGCAAATGTCTTTTTTATGATGCAAATGCAAGTACAAATATAAGTGATG
1 GTGATGCAAATGTGAATGCAAATGTCTTTTTCATGATGCACATGCAAGTATGAATACAAGTGATG
*
16116211 CAAATGTGAATGTCTTTTTTT
66 CAAATGCGAATGTCTTTTTTT
* * *
16116232 GTGATGCAAATGTGAATGCAAATAT-TTTTCTCATGATGCACATACAAGTATGAATACGAGTGAT
1 GTGATGCAAATGTGAATGCAAATGTCTTTT-TCATGATGCACATGCAAGTATGAATACAAGTGAT
* *
16116296 GAAAATGCGAATGTCATTTTTT
65 GCAAATGCGAATGTCTTTTTTT
* * * * **
16116318 GTGATGCAGATGTGAATGTAAATGTCTTTTTGAAGATGCACATGCAAGTATGAATGTGAA-TGAT
1 GTGATGCAAATGTGAATGCAAATGTCTTTTTCATGATGCACATGCAAGTATGAAT-ACAAGTGAT
* **
16116382 ACAAATGTAAATGTCTTTTTTTT
65 GCAAATGCGAATGTC-TTTTTTT
* * * * *
16116405 GTGATACAGATGTGAATGCATATGT-TTTTCTTAAGATGC-CATGCAAGTATGAATACAAGTGAT
1 GTGATGCAAATGTGAATGCAAATGTCTTTT-TCATGATGCACATGCAAGTATGAATACAAGTGAT
*
16116468 GCAAATGTGAATGTCCTTTCTTTGT
65 GCAAATGCGAATGT-CTTT-TTT-T
* * **
16116493 GATATAGATGTAAGTGATGCAAATGTTAATGCAAATGTCTTTCTCATGATGCACATGCAAGTACA
1 G---T-GATGCAA---ATG----TG--AATGCAAATGTCTTTTTCATGATGCACATGCAAGTATG
* * * *
16116558 AATACAAGTGATGAAAATGCAAATGTC-CTTTCT
53 AATACAAGTGATGCAAATGCGAATGTCTTTTTTT
* ** * * * * *
16116591 ATGATATAGATGTGAATGCGAATGTCTTTCTT-ATTATGCACATGCAAGTATAAATGCAAGTGAT
1 GTGATGCAAATGTGAATGCAAATGTCTTT-TTCATGATGCACATGCAAGTATGAATACAAGTGAT
* * *
16116655 GCAAATGCAAATGCCTTTTTAT
65 GCAAATGCGAATGTCTTTTTTT
* * * * * * * *
16116677 ATGATGCAAATGTGAATAC-AATGTCTTTCTCAAGATGCACATACAAGTATGAATGCGAGTAATG
1 GTGATGCAAATGTGAATGCAAATGTCTTTTTCATGATGCACATGCAAGTATGAATACAAGTGATG
16116741 CAAATGCGAATGTCTTTTTT
66 CAAATGCGAATGTCTTTTTT
16116761 CTTTTTTTTT
Statistics
Matches: 428, Mismatches: 74, Indels: 55
0.77 0.13 0.10
Matches are distributed among these distances:
84 1 0.00
85 115 0.27
86 186 0.43
87 47 0.11
88 2 0.00
91 4 0.01
92 4 0.01
94 5 0.01
95 4 0.01
98 1 0.00
99 4 0.01
100 1 0.00
101 18 0.04
102 36 0.08
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.35
Consensus pattern (86 bp):
GTGATGCAAATGTGAATGCAAATGTCTTTTTCATGATGCACATGCAAGTATGAATACAAGTGATG
CAAATGCGAATGTCTTTTTTT
Done.