Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 88 of 133
Found at i:17492456 original size:2 final size:2
Alignment explanation
Indices: 17492451--17492513 Score: 53
Period size: 2 Copynumber: 33.0 Consensus size: 2
17492441 GTGTGTGTAC
* * *
17492451 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AA ACT -T CT AA AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT
*
17492491 AT AT AT AT AT AT AT -T TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT
17492514 CTAAATTAAG
Statistics
Matches: 50, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
1 4 0.08
2 46 0.92
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:17492496 original size:30 final size:30
Alignment explanation
Indices: 17492460--17492521 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
17492450 CATATATATA
17492460 TATATATATATATATATTAAACT-TCTAAAT
1 TATATATATATATATATTAAA-TATCTAAAT
* *
17492490 TATATATATATATATTTTATATATCTAAAT
1 TATATATATATATATATTAAATATCTAAAT
17492520 TA
1 TA
17492522 AGGATGATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.03
30 28 0.97
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (30 bp):
TATATATATATATATATTAAATATCTAAAT
Found at i:17495281 original size:55 final size:55
Alignment explanation
Indices: 17495194--17495441 Score: 169
Period size: 55 Copynumber: 4.6 Consensus size: 55
17495184 AAAGCCCATT
* *
17495194 AGTATAGATTTGTATGTTTTAATTTTCTTACCTATA-CAATAGCTAGCACTCGTC
1 AGTATAGACTTGTATATTTTAATTTTCTTACCTATACCAATAGCTAGCACTCGTC
* * * * *
17495248 AGTATAGACTTATATATTTTAATTTTTCTTACCTATACCGATAGTTAACAC-CTATC
1 AGTATAGACTTGTATATTTTAA-TTTTCTTACCTATACCAATAGCTAGCACTC-GTC
* * * * *
17495304 AGTATAAAC-T-TATA----ATTTTTCTTACCTATATCGA-CGCATAGCA-TCCGTC
1 AGTATAGACTTGTATATTTTAATTTTCTTACCTATACCAATAGC-TAGCACT-CGTC
* * * * * *
17495353 AGTATAGACTTGTATTTTTTAATTTTCTTACCTATAACAATGGTTAGAAACT-ATC
1 AGTATAGACTTGTATATTTTAATTTTCTTACCTATACCAATAGCTAG-CACTCGTC
* **
17495408 A-TCATAGAATTGTATGCTTTAATTTTCTTACCTA
1 AGT-ATAGACTTGTATATTTTAATTTTCTTACCTA
17495442 CATCGACGAT
Statistics
Matches: 152, Mismatches: 26, Indels: 31
0.73 0.12 0.15
Matches are distributed among these distances:
48 1 0.01
49 31 0.20
50 3 0.02
51 3 0.02
54 24 0.16
55 67 0.44
56 22 0.14
57 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (55 bp):
AGTATAGACTTGTATATTTTAATTTTCTTACCTATACCAATAGCTAGCACTCGTC
Found at i:17495317 original size:56 final size:53
Alignment explanation
Indices: 17495210--17495322 Score: 138
Period size: 56 Copynumber: 2.1 Consensus size: 53
17495200 GATTTGTATG
* * *
17495210 TTTTAATTTTCTTACCTATACAATAGCTAGCACTCGTCAGTATAGACTTATATA
1 TTTTAATTTTCTTACCTATACAATAGCTAACACTCATCAGTATAAACTTATA-A
* *
17495264 TTTTAATTTTTCTTACCTATACCGATAGTTAACAC-CTATCAGTATAAACTTATAA
1 TTTTAA-TTTTCTTACCTATA-CAATAGCTAACACTC-ATCAGTATAAACTTATAA
17495319 TTTT
1 TTTT
17495323 TCTTACCTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 6 0.12
55 20 0.39
56 25 0.49
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (53 bp):
TTTTAATTTTCTTACCTATACAATAGCTAACACTCATCAGTATAAACTTATAA
Found at i:17501880 original size:62 final size:62
Alignment explanation
Indices: 17501753--17501892 Score: 149
Period size: 62 Copynumber: 2.2 Consensus size: 62
17501743 TCACATATGG
* * * * *
17501753 TTATTCAAGGCATTTTTTTGTCAAAAATGTCTTGAATAATCCCTAAAATTTTTTTATCGAAGA
1 TTATTCAAGGCA-TTTTATATCAAAAATGCCTTCAATAATCCCTAAAATTTTTTAATCGAAGA
* * **
17501816 TTATTGAAGGCATTTTATATCAAAAATGCCTTCAATAATCTCTTCAA-TTTTTAAT-GAAAGGA
1 TTATTCAAGGCATTTTATATCAAAAATGCCTTCAATAATCCCTAAAATTTTTTAATCG-AA-GA
*
17501878 TTAATCAAGGCATTT
1 TTATTCAAGGCATTT
17501893 AGCCCATAAA
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
60 1 0.02
61 9 0.14
62 43 0.67
63 11 0.17
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (62 bp):
TTATTCAAGGCATTTTATATCAAAAATGCCTTCAATAATCCCTAAAATTTTTTAATCGAAGA
Found at i:17502147 original size:62 final size:64
Alignment explanation
Indices: 17502020--17502151 Score: 169
Period size: 64 Copynumber: 2.1 Consensus size: 64
17502010 TTCTGGCCAG
** * * * * *
17502020 AAATACCTTGAATAATCCTCTTAAATTTTTTTATGAGAGAATTATTTAAGATATTTTTTACCAA
1 AAATACCTAAAATAATCCTCTCAAATTTTTTAAAGAGAGAATTATTTAAGACATTTTCTACCAA
* *
17502084 AAATACCTAAAATAATCCTCTCCAATTTTTTAAAG-GAG-ATTATTTAAGACATTTTCTATCAA
1 AAATACCTAAAATAATCCTCTCAAATTTTTTAAAGAGAGAATTATTTAAGACATTTTCTACCAA
17502146 AAATAC
1 AAATAC
17502152 ATTCAATAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
62 27 0.46
63 3 0.05
64 29 0.49
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (64 bp):
AAATACCTAAAATAATCCTCTCAAATTTTTTAAAGAGAGAATTATTTAAGACATTTTCTACCAA
Found at i:17502160 original size:62 final size:64
Alignment explanation
Indices: 17502020--17502161 Score: 171
Period size: 62 Copynumber: 2.2 Consensus size: 64
17502010 TTCTGGCCAG
* * * * * *
17502020 AAATACCTTGAATAATCCTCTTAAATTTTTTTATGAGAGAATTATTTAAGATATTTTTTACCAA
1 AAATACCTTAAATAATCCTCTCAAATTTTTTAAAGAGAGAATTATTTAAGACATTTTCTACCAA
* * *
17502084 AAATACCTAAAATAATCCTCTCCAATTTTTTAAAG-GAG-ATTATTTAAGACATTTTCTATCAA
1 AAATACCTTAAATAATCCTCTCAAATTTTTTAAAGAGAGAATTATTTAAGACATTTTCTACCAA
* *
17502146 AAATACATTCAATAAT
1 AAATACCTTAAATAAT
17502162 TACCTCCCAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
62 34 0.52
63 3 0.05
64 29 0.44
ACGTcount: A:0.41, C:0.13, G:0.06, T:0.39
Consensus pattern (64 bp):
AAATACCTTAAATAATCCTCTCAAATTTTTTAAAGAGAGAATTATTTAAGACATTTTCTACCAA
Found at i:17502777 original size:65 final size:65
Alignment explanation
Indices: 17502696--17502825 Score: 233
Period size: 65 Copynumber: 2.0 Consensus size: 65
17502686 ATCGCTATCA
* *
17502696 GCCTTTAATAATTCAACATCGTCACACCTCTCTTTTTACTGGTATGTCCTTATTTTATTTGTTTT
1 GCCTTTAATAATTCAACATCGGCACACCTCTCTTTTTACTGGTATGTCCTTATTTTATTTATTTT
*
17502761 GCCTTTAATAATTCAACATCGGCACACTTCTCTTTTTACTGGTATGTCCTTATTTTATTTATTTT
1 GCCTTTAATAATTCAACATCGGCACACCTCTCTTTTTACTGGTATGTCCTTATTTTATTTATTTT
17502826 TTATATTATT
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (65 bp):
GCCTTTAATAATTCAACATCGGCACACCTCTCTTTTTACTGGTATGTCCTTATTTTATTTATTTT
Found at i:17506655 original size:63 final size:62
Alignment explanation
Indices: 17506425--17506661 Score: 209
Period size: 63 Copynumber: 3.8 Consensus size: 62
17506415 TTTTAACCAA
* * * * * *
17506425 AAAAATACCTTAAATAATCCCTTACAAAATATTGAATTGGGTTATTGAAGGCGTTTCTAGCC
1 AAAAACACCTTAAATAATCCCTTATAAAATATTGAATAGGGTTATTGAAGGCGTTTTTTGAC
* * * * *
17506487 AAAAACACCTTAAATAATTCCTTAGAAAA-ATTGAATGGGGTTAGTGAA-G-GTGTTTTGAC
1 AAAAACACCTTAAATAATCCCTTATAAAATATTGAATAGGGTTATTGAAGGCGTTTTTTGAC
* * * **
17506546 AAAAA-ATGCCTTGAATAATCCCCT-T-CAAT-TTTTATGAAGGGATTATTGAAGGCGTTTTTTG
1 AAAAACA--CCTTAAATAATCCCTTATAAAATATTGAAT--AGGG-TTATTGAAGGCGTTTTTTG
*
17506607 TC
61 AC
*
17506609 AGAAAACACCTTGAATAATCCCTTATAAAATATTGAATAGGGTTATTGAAGGC
1 A-AAAACACCTTAAATAATCCCTTATAAAATATTGAATAGGGTTATTGAAGGC
17506662 ATTTCTAACT
Statistics
Matches: 138, Mismatches: 24, Indels: 25
0.74 0.13 0.13
Matches are distributed among these distances:
58 7 0.05
59 11 0.08
60 17 0.12
61 24 0.17
62 27 0.20
63 35 0.25
64 9 0.07
65 4 0.03
66 4 0.03
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (62 bp):
AAAAACACCTTAAATAATCCCTTATAAAATATTGAATAGGGTTATTGAAGGCGTTTTTTGAC
Found at i:17506690 original size:185 final size:189
Alignment explanation
Indices: 17506300--17506691 Score: 496
Period size: 185 Copynumber: 2.1 Consensus size: 189
17506290 TTTTTGTGAG
*
17506300 AAAATGCCTTGAATAA-TCCTTTAGAAAAAATTGAATGGGATTAGTCGAGGCGTTTATAGCCAAA
1 AAAATGCCTTGAATAATTCCTTTAGAAAAAATTGAATGGGATTAGTCGAGGCGTTTATAGACAAA
* * *
17506364 AACACCTTGAATAATTCTCTTCAATTTTTATGAGGAGATTATTGAATGCGTTTTTAACCAAAAAA
66 AACACCTTGAATAATCCCCTTCAATTTTTATGAGGAGATTATTGAAGGCGTTTTTAACCAAAAAA
* * * *
17506429 ATACCTTAAATAATCCCTTACAAAATATTGAATTGGGTTATTGAAGGCGTTTCTAGCCA
131 ACACCTTAAATAATCCCTTACAAAATATTGAATAGGGTTATTGAAGGCATTTCTAACCA
** * * *
17506488 AAAACACCTTAAATAATTCC-TTAG-AAAAATTGAATGGGGTTAGT-GAAGGTGTTT-T-GACAA
1 AAAATGCCTTGAATAATTCCTTTAGAAAAAATTGAATGGGATTAGTCG-AGGCGTTTATAGACAA
***
17506548 AAA-ATGCCTTGAATAATCCCCTTCAATTTTTATGAAGG-GATTATTGAAGGCGTTTTTTGTC-A
65 AAACA--CCTTGAATAATCCCCTTCAATTTTTATG-AGGAGATTATTGAAGGCGTTTTTAACCAA
* * * *
17506610 GAAAACACCTTGAATAATCCCTTATAAAATATTGAATAGGGTTATTGAAGGCATTTCTAACTA
127 AAAAACACCTTAAATAATCCCTTACAAAATATTGAATAGGGTTATTGAAGGCATTTCTAACCA
*
17506673 AAAATGCATTGAATAATTC
1 AAAATGCCTTGAATAATTC
17506692 GAGGATTATT
Statistics
Matches: 175, Mismatches: 24, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
184 1 0.01
185 78 0.45
186 47 0.27
187 29 0.17
188 17 0.10
189 3 0.02
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (189 bp):
AAAATGCCTTGAATAATTCCTTTAGAAAAAATTGAATGGGATTAGTCGAGGCGTTTATAGACAAA
AACACCTTGAATAATCCCCTTCAATTTTTATGAGGAGATTATTGAAGGCGTTTTTAACCAAAAAA
ACACCTTAAATAATCCCTTACAAAATATTGAATAGGGTTATTGAAGGCATTTCTAACCA
Found at i:17507422 original size:2 final size:2
Alignment explanation
Indices: 17507409--17507463 Score: 56
Period size: 2 Copynumber: 26.5 Consensus size: 2
17507399 TAACATTCAG
* * *
17507409 TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA CTGA TA GA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -T-A TA TA
*
17507453 TA TT TA TA TA T
1 TA TA TA TA TA T
17507464 CGTCAAAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
2 40 0.93
3 2 0.05
4 1 0.02
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17509242 original size:29 final size:29
Alignment explanation
Indices: 17509208--17509279 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
17509198 TTATATTTTT
* *
17509208 ATATATATTCGTATTAATCGTATTTATTC
1 ATATATATTCGTATTAATCATATCTATTC
* * *
17509237 GTATATATTCATATTAATCATATCTATTT
1 ATATATATTCGTATTAATCATATCTATTC
17509266 ATATATATTCGTAT
1 ATATATATTCGTAT
17509280 CGTATTTAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (29 bp):
ATATATATTCGTATTAATCATATCTATTC
Found at i:17511204 original size:2 final size:2
Alignment explanation
Indices: 17511197--17511225 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17511187 TAATCTTTCA
17511197 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
17511226 AACTTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:17512154 original size:32 final size:32
Alignment explanation
Indices: 17512117--17512184 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
17512107 TTTAAATATT
*
17512117 ATTTACATGTTAAATAAATAAATAAGTAAATA
1 ATTTACATGTTAAATAAATAAATAAATAAATA
*
17512149 ATTTACATGTTAAATAAATAAATAAATAAATG
1 ATTTACATGTTAAATAAATAAATAAATAAATA
17512181 ATTT
1 ATTT
17512185 TGTATATAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.54, C:0.03, G:0.06, T:0.37
Consensus pattern (32 bp):
ATTTACATGTTAAATAAATAAATAAATAAATA
Found at i:17513320 original size:4 final size:4
Alignment explanation
Indices: 17513311--17513340 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
17513301 TTTTGTTACC
*
17513311 TATT TATT TATT TATT TAGT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TA
17513341 GCTATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (4 bp):
TATT
Found at i:17513326 original size:12 final size:12
Alignment explanation
Indices: 17513311--17513347 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
17513301 TTTTGTTACC
*
17513311 TATTTATTTATT
1 TATTTAGTTATT
17513323 TATTTAGTTATT
1 TATTTAGTTATT
*
17513335 TATTTAGCTATT
1 TATTTAGTTATT
17513347 T
1 T
17513348 TTTTGTTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.24, C:0.03, G:0.05, T:0.68
Consensus pattern (12 bp):
TATTTAGTTATT
Found at i:17522550 original size:39 final size:38
Alignment explanation
Indices: 17522478--17522551 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 38
17522468 ATTTTTAATG
* *
17522478 ATGGATTTCATTGGTAATTACCGATAGACTTTTTATCA
1 ATGGATTTCATTGGTAATTACAGATAGAATTTTTATCA
*
17522516 ATGGATTTTCATTGGTAATTGCAGAT-GAAATTTTTA
1 ATGGA-TTTCATTGGTAATTACAGATAG-AATTTTTA
17522552 CCAACGAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 6 0.19
39 25 0.81
ACGTcount: A:0.30, C:0.09, G:0.18, T:0.43
Consensus pattern (38 bp):
ATGGATTTCATTGGTAATTACAGATAGAATTTTTATCA
Found at i:17529773 original size:5 final size:5
Alignment explanation
Indices: 17529759--17529800 Score: 52
Period size: 5 Copynumber: 8.4 Consensus size: 5
17529749 AGATTCGACT
17529759 TAAAA T-AAA TAAAA TAAAA CTAAAA TAAAA TATAAA -AAAA TA
1 TAAAA TAAAA TAAAA TAAAA -TAAAA TAAAA TA-AAA TAAAA TA
17529801 TTTGATGAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
4 7 0.21
5 18 0.55
6 8 0.24
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:17529784 original size:11 final size:10
Alignment explanation
Indices: 17529759--17529800 Score: 52
Period size: 11 Copynumber: 4.2 Consensus size: 10
17529749 AGATTCGACT
17529759 TAAAAT-AAA
1 TAAAATAAAA
17529768 TAAAATAAAA
1 TAAAATAAAA
17529778 CTAAAATAAAA
1 -TAAAATAAAA
17529789 TATAAA-AAAA
1 TA-AAATAAAA
17529799 TA
1 TA
17529801 TTTGATGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
9 6 0.20
10 11 0.37
11 13 0.43
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.21
Consensus pattern (10 bp):
TAAAATAAAA
Found at i:17530332 original size:16 final size:16
Alignment explanation
Indices: 17530311--17530344 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17530301 ATTTCAGATT
* *
17530311 TTTTTTTATTTTTTAC
1 TTTTTTTAATTTTGAC
17530327 TTTTTTTAATTTTGAC
1 TTTTTTTAATTTTGAC
17530343 TT
1 TT
17530345 CTTGATTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTTTAATTTTGAC
Found at i:17530382 original size:7 final size:7
Alignment explanation
Indices: 17530361--17530394 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
17530351 TTTCATCAAC
*
17530361 TAAACAA
1 TAAATAA
17530368 TAAA-AA
1 TAAATAA
17530374 TAAATAA
1 TAAATAA
17530381 TAAATAA
1 TAAATAA
17530388 TAAATAA
1 TAAATAA
17530395 AGCACTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (7 bp):
TAAATAA
Found at i:17530391 original size:14 final size:13
Alignment explanation
Indices: 17530361--17530394 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
17530351 TTTCATCAAC
*
17530361 TAAACAATAAAAA
1 TAAATAATAAAAA
17530374 TAAATAATAAATAA
1 TAAATAATAAA-AA
17530388 TAAATAA
1 TAAATAA
17530395 AGCACTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (13 bp):
TAAATAATAAAAA
Found at i:17531878 original size:65 final size:62
Alignment explanation
Indices: 17531759--17531889 Score: 158
Period size: 65 Copynumber: 2.1 Consensus size: 62
17531749 TCACAAAATT
* * * *
17531759 AAAAAAAAAAACTAAAATTTTTTTTTAAAAATTTAAAATTTTGAAATATTTTTAAAAATTATAA
1 AAAAAAAAAAACTAAAAATATTTTTTAAAAATTTAAAATTATGAAATATCTTT-AAAATTA-AA
*
17531823 AAAATAAAAAAACTAAAAATATTTTTTAAAATTTTAAACATATATGAAA-A-CTTTAAAATTAAA
1 AAAA-AAAAAAACTAAAAATATTTTTTAAAAATTTAAA-AT-TATGAAATATCTTTAAAATTAAA
17531886 AAAA
1 AAAA
17531890 GTCAAAATTT
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
63 6 0.10
64 11 0.19
65 33 0.56
66 3 0.05
67 6 0.10
ACGTcount: A:0.60, C:0.03, G:0.02, T:0.36
Consensus pattern (62 bp):
AAAAAAAAAAACTAAAAATATTTTTTAAAAATTTAAAATTATGAAATATCTTTAAAATTAAA
Found at i:17532039 original size:20 final size:18
Alignment explanation
Indices: 17532014--17532059 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
17532004 TGAAAATAAT
17532014 AAAAATTTAAAATACTTTTA
1 AAAAATTTAAAA-A-TTTTA
*
17532034 AAAAATATAAAAATTTTA
1 AAAAATTTAAAAATTTTA
*
17532052 ACAAATTT
1 AAAAATTT
17532060 GTAAAAAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 11 0.48
19 1 0.04
20 11 0.48
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAAATTTAAAAATTTTA
Found at i:17532050 original size:18 final size:20
Alignment explanation
Indices: 17532014--17532057 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
17532004 TGAAAATAAT
*
17532014 AAAAATTTAAAATACTTTTA
1 AAAAATATAAAATACTTTTA
17532034 AAAAATATAAAA-A-TTTTA
1 AAAAATATAAAATACTTTTA
*
17532052 ACAAAT
1 AAAAAT
17532058 TTGTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 1 0.05
20 11 0.50
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AAAAATATAAAATACTTTTA
Found at i:17532051 original size:29 final size:30
Alignment explanation
Indices: 17532006--17532086 Score: 80
Period size: 31 Copynumber: 2.7 Consensus size: 30
17531996 TAAAAAACTG
17532006 AAAATAATAAAAA-TTTAAAATACTTT-T-AA
1 AAAAT-ATAAAAATTTTAAAATA-TTTGTAAA
17532035 AAAATATAAAAATTTTAACAA-ATTTGTAAAA
1 AAAATATAAAAATTTTAA-AATATTTGT-AAA
* *
17532066 AAAATTTTAAAATTTTAAAAT
1 AAAATATAAAAATTTTAAAAT
17532087 TTTTTTTTAT
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
28 10 0.23
29 12 0.27
30 4 0.09
31 18 0.41
ACGTcount: A:0.60, C:0.02, G:0.01, T:0.36
Consensus pattern (30 bp):
AAAATATAAAAATTTTAAAATATTTGTAAA
Found at i:17532078 original size:21 final size:22
Alignment explanation
Indices: 17532042--17532085 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
17532032 TAAAAAATAT
17532042 AAAAATTTTAACAAATTTGTAAA
1 AAAAATTTTAACAAATTT-TAAA
17532065 AAAAATTTT-A-AAATTTTAAA
1 AAAAATTTTAACAAATTTTAAA
17532085 A
1 A
17532086 TTTTTTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.24
21 6 0.29
22 1 0.05
23 9 0.43
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (22 bp):
AAAAATTTTAACAAATTTTAAA
Found at i:17532180 original size:28 final size:28
Alignment explanation
Indices: 17532148--17532267 Score: 97
Period size: 28 Copynumber: 4.3 Consensus size: 28
17532138 AGAAAAATTT
*
17532148 ATTTTTATTAAAATTTT-CATTTTTTGA
1 ATTTTTATTAAAATTTTGAATTTTTTGA
** *
17532175 ATTTTT-TGTAATTTTTTGAATTTTTTGG
1 ATTTTTAT-TAAAATTTTGAATTTTTTGA
**
17532203 ATTTTTATTAAAATTTTGAGAATTTTTTTT
1 ATTTTTATTAAAATTTT--GAATTTTTTGA
*
17532233 A-TTTT-TTAAAATTTAAT-AATTTTTTTA
1 ATTTTTATTAAAATTT--TGAATTTTTTGA
17532260 ATTTTTAT
1 ATTTTTAT
17532268 GCTTTTTAAA
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
26 1 0.01
27 23 0.31
28 34 0.45
29 6 0.08
30 11 0.15
ACGTcount: A:0.28, C:0.01, G:0.06, T:0.65
Consensus pattern (28 bp):
ATTTTTATTAAAATTTTGAATTTTTTGA
Found at i:17532187 original size:10 final size:9
Alignment explanation
Indices: 17532166--17532208 Score: 68
Period size: 9 Copynumber: 4.7 Consensus size: 9
17532156 TAAAATTTTC
17532166 ATTTTTTGA
1 ATTTTTTGA
17532175 ATTTTTTGTA
1 ATTTTTTG-A
17532185 ATTTTTTGA
1 ATTTTTTGA
*
17532194 ATTTTTTGG
1 ATTTTTTGA
17532203 ATTTTT
1 ATTTTT
17532209 ATTAAAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
9 23 0.72
10 9 0.28
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (9 bp):
ATTTTTTGA
Found at i:17532208 original size:19 final size:19
Alignment explanation
Indices: 17532166--17532208 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
17532156 TAAAATTTTC
*
17532166 ATTTTTTGAATTTTTTGTA
1 ATTTTTTGAATTTTTTGGA
17532185 ATTTTTTGAATTTTTTGG-
1 ATTTTTTGAATTTTTTGGA
17532203 ATTTTT
1 ATTTTT
17532209 ATTAAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.70
Consensus pattern (19 bp):
ATTTTTTGAATTTTTTGGA
Found at i:17532263 original size:9 final size:9
Alignment explanation
Indices: 17532161--17532265 Score: 57
Period size: 9 Copynumber: 11.2 Consensus size: 9
17532151 TTTATTAAAA
*
17532161 TTTTCATTT
1 TTTTAATTT
*
17532170 TTTGAATTT
1 TTTTAATTT
17532179 TTTGTAATTT
1 TTT-TAATTT
*
17532189 TTTGAATTT
1 TTTTAATTT
**
17532198 TTTGGATTT
1 TTTTAATTT
17532207 TTATTAAAATTT
1 TT-TT--AATTT
***
17532219 TGAGAATTT
1 TTTTAATTT
*
17532228 TTTTTATTT
1 TTTTAATTT
* *
17532237 TTTAAAATT
1 TTTTAATTT
**
17532246 TAATAATTT
1 TTTTAATTT
17532255 TTTTAATTT
1 TTTTAATTT
17532264 TT
1 TT
17532266 ATGCTTTTTA
Statistics
Matches: 69, Mismatches: 23, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
9 55 0.80
10 9 0.13
12 5 0.07
ACGTcount: A:0.26, C:0.01, G:0.07, T:0.67
Consensus pattern (9 bp):
TTTTAATTT
Found at i:17532263 original size:27 final size:28
Alignment explanation
Indices: 17532070--17532265 Score: 86
Period size: 27 Copynumber: 7.1 Consensus size: 28
17532060 GTAAAAAAAA
17532070 TTTTAAAATTTTAA-AATTTTTTT--TT
1 TTTTAAAATTTTAAGAATTTTTTTAATT
** * *
17532095 ATTTTCAATTTTTTAAG-CTTTTTGTGAATT
1 -TTTT-AAAATTTTAAGAATTTTT-TTAATT
** *** *
17532125 TTTTTTAATTTTAAGAA-AAATTTATTT
1 TTTTAAAATTTTAAGAATTTTTTTAATT
* *
17532152 TTATTAAAATTTT---CATTTTTTGAATT
1 TT-TTAAAATTTTAAGAATTTTTTTAATT
** ** * *
17532178 TTTTGTAATTTTTTGAATTTTTTGGATTT
1 TTTTAAAATTTTAAGAATTTTTT-TAATT
* *
17532207 TTATTAAAATTTTGAGAATTTTTTTTATT
1 TT-TTAAAATTTTAAGAATTTTTTTAATT
*
17532236 TTTTAAAA-TTTAATAATTTTTTTAATT
1 TTTTAAAATTTTAAGAATTTTTTTAATT
17532263 TTT
1 TTT
17532266 ATGCTTTTTA
Statistics
Matches: 121, Mismatches: 36, Indels: 25
0.66 0.20 0.14
Matches are distributed among these distances:
25 9 0.07
26 11 0.09
27 38 0.31
28 30 0.25
29 14 0.12
30 19 0.16
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.64
Consensus pattern (28 bp):
TTTTAAAATTTTAAGAATTTTTTTAATT
Found at i:17532275 original size:28 final size:28
Alignment explanation
Indices: 17532244--17532316 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 28
17532234 TTTTTTAAAA
* * **
17532244 TTTAATAATTTTTTTAATTTTTATGCTT
1 TTTAATAATTTTTTAAATATTTATAATT
* * * *
17532272 TTTAAAAATATTTCAAATATTTGTAATT
1 TTTAATAATTTTTTAAATATTTATAATT
17532300 TTTAATAATTTTTTAAA
1 TTTAATAATTTTTTAAA
17532317 ATAATTCAAA
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (28 bp):
TTTAATAATTTTTTAAATATTTATAATT
Found at i:17532375 original size:22 final size:21
Alignment explanation
Indices: 17532347--17532404 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 21
17532337 ATTTGTAAAA
*
17532347 TTTTTTAAGATTTGTTTTGAAT
1 TTTTTTAAAATTT-TTTTGAAT
17532369 TTTTTTAAAATTTTTTTGAAAT
1 TTTTTTAAAATTTTTTTG-AAT
17532391 TTCTTATTAAAATT
1 TT-TT-TTAAAATT
17532405 GACATGATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 5 0.16
22 17 0.53
23 2 0.06
24 8 0.25
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (21 bp):
TTTTTTAAAATTTTTTTGAAT
Found at i:17532383 original size:19 final size:19
Alignment explanation
Indices: 17532233--17532383 Score: 78
Period size: 19 Copynumber: 7.8 Consensus size: 19
17532223 AATTTTTTTT
17532233 ATTTTTTAAAA--TTTAATA
1 ATTTTTTAAAATTTTTAA-A
* **
17532251 ATTTTTT-TAATTTTTATG
1 ATTTTTTAAAATTTTTAAA
* * * *
17532269 CTTTTTAAAAATATTTCAA
1 ATTTTTTAAAATTTTTAAA
*
17532288 ATATTTGT--AATTTTTAATA
1 AT-TTTTTAAAATTTTTAA-A
* *
17532307 ATTTTTTAAAATAATTCAAA
1 ATTTTTTAAAAT-TTTTAAA
*
17532327 ATTTTTTAAAATTTGTAAA
1 ATTTTTTAAAATTTTTAAA
* *
17532346 ATTTTTTAAGATTTGTTTTGAA
1 ATTTTTTAA-A-AT-TTTTAAA
*
17532368 TTTTTTTAAAATTTTT
1 ATTTTTTAAAATTTTT
17532384 TTGAAATTTC
Statistics
Matches: 96, Mismatches: 26, Indels: 21
0.67 0.18 0.15
Matches are distributed among these distances:
17 2 0.02
18 23 0.24
19 31 0.32
20 21 0.22
21 6 0.06
22 13 0.14
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (19 bp):
ATTTTTTAAAATTTTTAAA
Found at i:17532385 original size:11 final size:10
Alignment explanation
Indices: 17532298--17532384 Score: 77
Period size: 10 Copynumber: 8.5 Consensus size: 10
17532288 ATATTTGTAA
17532298 TTTTTAATAAT
1 TTTTTAA-AAT
17532309 TTTTTAAAAT
1 TTTTTAAAAT
** *
17532319 AATTCAAAAT
1 TTTTTAAAAT
17532329 TTTTTAAAA-
1 TTTTTAAAAT
*
17532338 TTTGTAAAAT
1 TTTTTAAAAT
*
17532348 TTTTTAAGATT
1 TTTTTAA-AAT
* *
17532359 TGTTTTGAATT
1 T-TTTTAAAAT
17532370 TTTTTAAAAT
1 TTTTTAAAAT
17532380 TTTTT
1 TTTTT
17532385 TGAAATTTCT
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
9 8 0.13
10 34 0.56
11 14 0.23
12 5 0.08
ACGTcount: A:0.36, C:0.01, G:0.05, T:0.59
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:17532390 original size:11 final size:11
Alignment explanation
Indices: 17532347--17532392 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
17532337 ATTTGTAAAA
17532347 TTTTTT-AAGAT
1 TTTTTTGAA-AT
17532358 TTGTTTTG-AAT
1 TT-TTTTGAAAT
*
17532369 TTTTTTAAAAT
1 TTTTTTGAAAT
17532380 TTTTTTGAAAT
1 TTTTTTGAAAT
17532391 TT
1 TT
17532393 CTTATTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
10 4 0.13
11 21 0.70
12 5 0.17
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.65
Consensus pattern (11 bp):
TTTTTTGAAAT
Found at i:17533961 original size:21 final size:21
Alignment explanation
Indices: 17533935--17533979 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 21
17533925 ATATAATAAA
17533935 AATTTTTAATTT-ATCAATTTT
1 AATTTTT-ATTTAATCAATTTT
17533956 AATTTTTATTTAATCAATTTT
1 AATTTTTATTTAATCAATTTT
17533977 AAT
1 AAT
17533980 AAAAAACTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (21 bp):
AATTTTTATTTAATCAATTTT
Found at i:17535692 original size:13 final size:13
Alignment explanation
Indices: 17535671--17535752 Score: 85
Period size: 13 Copynumber: 6.3 Consensus size: 13
17535661 AATTTCATAC
*
17535671 AAATATTATACAA
1 AAATATCATACAA
* * *
17535684 AAATTTTATGCAA
1 AAATATCATACAA
*
17535697 AAATATCATATAA
1 AAATATCATACAA
17535710 AAATATCATACAA
1 AAATATCATACAA
17535723 AAATATCATA-AA
1 AAATATCATACAA
* *
17535735 AAATTCTCATATAA
1 AAA-TATCATACAA
17535749 AAAT
1 AAAT
17535753 TCAACCAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
12 5 0.08
13 49 0.83
14 5 0.08
ACGTcount: A:0.59, C:0.10, G:0.01, T:0.30
Consensus pattern (13 bp):
AAATATCATACAA
Found at i:17535711 original size:26 final size:25
Alignment explanation
Indices: 17535655--17535752 Score: 101
Period size: 26 Copynumber: 3.9 Consensus size: 25
17535645 CTTTTTATTT
* *
17535655 ATAAACAATTTCATAC--AAATATT
1 ATAAAAAATTTCATACAAAAATATC
* *
17535678 ATACAAAAATTTTATGCAAAAATATC
1 ATA-AAAAATTTCATACAAAAATATC
*
17535704 ATATAAAAATATCATACAAAAATATC
1 ATA-AAAAATTTCATACAAAAATATC
*
17535730 ATAAAAAATTCTCATATAAAAAT
1 ATAAAAAATT-TCATACAAAAAT
17535753 TCAACCAAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
23 3 0.05
24 10 0.16
25 6 0.10
26 42 0.69
ACGTcount: A:0.57, C:0.11, G:0.01, T:0.31
Consensus pattern (25 bp):
ATAAAAAATTTCATACAAAAATATC
Found at i:17535715 original size:39 final size:39
Alignment explanation
Indices: 17535671--17535752 Score: 103
Period size: 39 Copynumber: 2.1 Consensus size: 39
17535661 AATTTCATAC
* * * *
17535671 AAATATTATACAAAAATTTTATGCAAAAA-TATCATATAA
1 AAATATCATACAAAAATATCAT-AAAAAATTATCATATAA
*
17535710 AAATATCATACAAAAATATCATAAAAAATTCTCATATAA
1 AAATATCATACAAAAATATCATAAAAAATTATCATATAA
17535749 AAAT
1 AAAT
17535753 TCAACCAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 5 0.14
39 32 0.86
ACGTcount: A:0.59, C:0.10, G:0.01, T:0.30
Consensus pattern (39 bp):
AAATATCATACAAAAATATCATAAAAAATTATCATATAA
Found at i:17537113 original size:44 final size:43
Alignment explanation
Indices: 17537065--17537443 Score: 264
Period size: 43 Copynumber: 8.8 Consensus size: 43
17537055 AGGCTTCTTA
* *
17537065 AACCAAAGGTATTGAAACTTTTAAAAATTTGAAAAGATTCATCC
1 AACCAAAGGTATTGAAAC-TTTAAAAATTTGAAAAGACTCATCT
* ** *
17537109 AACCAAAGGTATTAAAACTTT-AAAATTCCAAAAGACTCATTT
1 AACCAAAGGTATTGAAACTTTAAAAATTTGAAAAGACTCATCT
** ** *
17537151 AACCAAAGAAATTGAAACATTTAAAAATTCAAAAAGACTCTTCT
1 AACCAAAGGTATTGAAAC-TTTAAAAATTTGAAAAGACTCATCT
* * * *
17537195 AACCAAAGGTATTGAAACTTTTAAAAAATT-AAAAAATTCCTCT
1 AACCAAAGGTATTGAAAC-TTTAAAAATTTGAAAAGACTCATCT
* * ** ** ** *
17537238 AACAAAAGGCATTGACATTTTTAAAAATTCAAAAAGGTTCCTCT
1 AACCAAAGGTATTGA-AACTTTAAAAATTTGAAAAGACTCATCT
* * * * * *
17537282 AATCAAAGGAATTGAAACTTTAAAAAATTGAAATGGCTCATTT
1 AACCAAAGGTATTGAAACTTTAAAAATTTGAAAAGACTCATCT
* * * * * *
17537325 AACTAGATGCATTGAAACTTTAAAATTTTGAAAAGACTCATTT
1 AACCAAAGGTATTGAAACTTTAAAAATTTGAAAAGACTCATCT
* * * ** *
17537368 AACCAAAGGT-TTTAATATTTTAAAATTTTGAAAAGGTTTC-TCC
1 AACCAAAGGTATTGAA-ACTTTAAAAATTTGAAAA-GACTCATCT
* * *
17537411 AACCACATGTATTGAAACTTT-AAAATTTCAAAA
1 AACCAAAGGTATTGAAACTTTAAAAATTTGAAAA
17537444 AATTTCTCTA
Statistics
Matches: 263, Mismatches: 65, Indels: 16
0.76 0.19 0.05
Matches are distributed among these distances:
42 45 0.17
43 127 0.48
44 91 0.35
ACGTcount: A:0.46, C:0.14, G:0.10, T:0.31
Consensus pattern (43 bp):
AACCAAAGGTATTGAAACTTTAAAAATTTGAAAAGACTCATCT
Found at i:17537260 original size:43 final size:43
Alignment explanation
Indices: 17537068--17537310 Score: 174
Period size: 44 Copynumber: 5.6 Consensus size: 43
17537058 CTTCTTAAAC
* ** * *
17537068 CAAAGGTATTGAAACTTTT-AAAAATTTGAAAAGATTCATCCAA
1 CAAAGGAATTGAAA-TTTTAAAAAATTCAAAAAGATTCCTCTAA
* * * * * * *
17537111 CCAAAGGTATTAAAACTTT--AAAATTCCAAAAGACTCATTTAA
1 -CAAAGGAATTGAAATTTTAAAAAATTCAAAAAGATTCCTCTAA
* * * *
17537153 CCAAAGAAATTGAAACATTT-AAAAATTCAAAAAGACTCTTCTAA
1 -CAAAGGAATTGAAA-TTTTAAAAAATTCAAAAAGATTCCTCTAA
*
17537197 CCAAAGGTATTGAAACTTTTAAAAAATT-AAAAA-ATTCCTCTAA
1 -CAAAGGAATTGAAA-TTTTAAAAAATTCAAAAAGATTCCTCTAA
* * * *
17537240 CAAAAGGCATTGACATTTTTAAAAATTCAAAAAGGTTCCTCTAA
1 C-AAAGGAATTGAAATTTTAAAAAATTCAAAAAGATTCCTCTAA
*
17537284 TCAAAGGAATTGAAACTTTAAAAAATT
1 -CAAAGGAATTGAAATTTTAAAAAATT
17537311 GAAATGGCTC
Statistics
Matches: 165, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
42 42 0.25
43 30 0.18
44 85 0.52
45 8 0.05
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (43 bp):
CAAAGGAATTGAAATTTTAAAAAATTCAAAAAGATTCCTCTAA
Found at i:17537339 original size:87 final size:87
Alignment explanation
Indices: 17537069--17537310 Score: 213
Period size: 87 Copynumber: 2.8 Consensus size: 87
17537059 TTCTTAAACC
* * * ** * * * * *
17537069 AAAGGTATTGAAACTTTTAAAAATTTGAAAAGATTCATCCAACCAAAGGTATTAAAAC-TTT--A
1 AAAGGCATTGACATTTTTAAAAATTCAAAAAGACTCCTCTAACCAAAGGAATTGAAACTTTTAAA
* * *
17537131 AAATTCCAAAAGACTCATTTAACC
66 AAATT--AAAAAACTCATCTAACA
** * ** * *
17537155 AAAGAAATTGAAACATTTAAAAATTCAAAAAGACTCTTCTAACCAAAGGTATTGAAACTTTTAAA
1 AAAGGCATTGACATTTTTAAAAATTCAAAAAGACTCCTCTAACCAAAGGAATTGAAACTTTTAAA
* *
17537220 AAATTAAAAAATTCCTCTAACA
66 AAATTAAAAAACTCATCTAACA
** *
17537242 AAAGGCATTGACATTTTTAAAAATTCAAAAAGGTTCCTCTAATCAAAGGAATTGAAAC-TTTAAA
1 AAAGGCATTGACATTTTTAAAAATTCAAAAAGACTCCTCTAACCAAAGGAATTGAAACTTTTAAA
17537306 AAATT
66 AAATT
17537311 GAAATGGCTC
Statistics
Matches: 129, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
86 60 0.47
87 63 0.49
89 6 0.05
ACGTcount: A:0.48, C:0.14, G:0.09, T:0.29
Consensus pattern (87 bp):
AAAGGCATTGACATTTTTAAAAATTCAAAAAGACTCCTCTAACCAAAGGAATTGAAACTTTTAAA
AAATTAAAAAACTCATCTAACA
Found at i:17537723 original size:33 final size:32
Alignment explanation
Indices: 17537534--17537723 Score: 116
Period size: 32 Copynumber: 5.9 Consensus size: 32
17537524 ACAAAGTAAC
* * *
17537534 TTGGATTTAATCGAAGTTAAAAGTG-AA-GAC
1 TTGGATTGAATCGAAGTTAAAAATGAAATGAT
* * * * * *
17537564 TTGGACTGAACCGAAGTTTATAAATAAAATTAC
1 TTGGATTGAATCGAAG-TTAAAAATGAAATGAT
* * * * * *
17537597 CTAGATTGAACCGAAGTAAAAAATGCAATGGT
1 TTGGATTGAATCGAAGTTAAAAATGAAATGAT
* *
17537629 TTGGATTGAATCAAAGTTTGAAAATGAAATGAT
1 TTGGATTGAATCGAAG-TTAAAAATGAAATGAT
** * * * *
17537662 TTAAACT-AAACTAAAGTTGAAAATGAAATGAT
1 TTGGATTGAATC-GAAGTTAAAAATGAAATGAT
17537694 TTGGATTGAATCGAAGTCTAAAAATGAAAT
1 TTGGATTGAATCGAAGT-TAAAAATGAAAT
17537724 CACTTGGACT
Statistics
Matches: 118, Mismatches: 35, Indels: 11
0.72 0.21 0.07
Matches are distributed among these distances:
30 13 0.11
31 6 0.05
32 50 0.42
33 49 0.42
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (32 bp):
TTGGATTGAATCGAAGTTAAAAATGAAATGAT
Found at i:17537763 original size:94 final size:92
Alignment explanation
Indices: 17537648--17537825 Score: 207
Period size: 94 Copynumber: 1.9 Consensus size: 92
17537638 ATCAAAGTTT
* * * * * *
17537648 GAAAATGAAATGATTTAAACTAAACTAAAGT-T-GAAAATGAAATGATTTGGATTGAATCGAAGT
1 GAAAATGAAATGACTTAAACT-AACCAAAGTCTAG-AAATAAAATGACTTGGACT-AACCGAAGT
17537711 CTAAAAATGAAATCACTTGGACTATGAAGCC
63 C-AAAAATGAAATCACTTGGACTATGAAGCC
* * *
17537742 GAAAATGTAATGACTTGAACTAACCAAAGTCTAGAAATAAAATGACTTGGACTAACCGAAGTCGA
1 GAAAATGAAATGACTTAAACTAACCAAAGTCTAGAAATAAAATGACTTGGACTAACCGAAGTCAA
* *
17537807 AAATGCAATGACTTGGACT
66 AAATGAAATCACTTGGACT
17537826 GAATCAAAAT
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
92 18 0.25
93 17 0.24
94 35 0.49
95 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (92 bp):
GAAAATGAAATGACTTAAACTAACCAAAGTCTAGAAATAAAATGACTTGGACTAACCGAAGTCAA
AAATGAAATCACTTGGACTATGAAGCC
Found at i:17537787 original size:32 final size:31
Alignment explanation
Indices: 17537750--17537861 Score: 100
Period size: 32 Copynumber: 3.5 Consensus size: 31
17537740 CCGAAAATGT
17537750 AATGACTTGAACTAACCAAAGTCTAGAAATAA
1 AATGACTTGAACTAACCAAAGTCTA-AAATAA
* * * **
17537782 AATGACTTGGACTAACCGAAGTCGAAAATGC
1 AATGACTTGAACTAACCAAAGTCTAAAATAA
* * * *
17537813 AATGACTTGGACTGAATCAAAATCTAAAAATTA
1 AATGACTTGAACT-AACCAAAGTCT-AAAATAA
17537846 AATGACTT-AGACTAAC
1 AATGACTTGA-ACTAAC
17537862 TAGAGCCAAA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
31 17 0.27
32 31 0.48
33 16 0.25
ACGTcount: A:0.46, C:0.16, G:0.15, T:0.23
Consensus pattern (31 bp):
AATGACTTGAACTAACCAAAGTCTAAAATAA
Found at i:17537910 original size:125 final size:123
Alignment explanation
Indices: 17537647--17537944 Score: 296
Period size: 125 Copynumber: 2.4 Consensus size: 123
17537637 AATCAAAGTT
* * * * * * *
17537647 TGAAAATGAAATGATTTAAACTAAACTAAAGTTGAAAATGAAATGATTTGGATTGAATCGAAGTC
1 TGAAAATGAAATGATTTAGACT-AACCAAAGTCGAAAATGAAATGACTTGGACTGAATCAAAATC
* * * *
17537712 TAAAAATGAAATCACTTGGACTATGAAGCCGAAAATGTAATGACTTGAACTAACCAAAGTC
65 TAAAAATGAAATCACTTAGACTATGAAGCCAAAAATGCAATGACTTGAACT-A-CAAAATC
* * * * *
17537773 T-AGAAATAAAATGACTTGGACTAACCGAAGTCGAAAATGCAATGACTTGGACTGAATCAAAATC
1 TGA-AAATGAAATGATTTAGACTAACCAAAGTCGAAAATGAAATGACTTGGACTGAATCAAAATC
* * *
17537837 TAAAAATTAAATGACTTAGACTAACT-AGAGCCAAAAATGCAATGACTTGGAAGT-CAAAATC
65 TAAAAATGAAATCACTTAGACT-A-TGA-AGCCAAAAATGCAATGACTT-GAACTACAAAATC
* *
17537898 TGAAAATGAAATGATTTAGACTAAGCCAAAGTCAAAACATAAAATGA
1 TGAAAATGAAATGATTTAGACTAA-CCAAAGTCGAAA-ATGAAATGA
17537945 TCTTAAATAA
Statistics
Matches: 138, Mismatches: 26, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
125 79 0.57
126 29 0.21
127 26 0.19
128 4 0.03
ACGTcount: A:0.47, C:0.13, G:0.17, T:0.24
Consensus pattern (123 bp):
TGAAAATGAAATGATTTAGACTAACCAAAGTCGAAAATGAAATGACTTGGACTGAATCAAAATCT
AAAAATGAAATCACTTAGACTATGAAGCCAAAAATGCAATGACTTGAACTACAAAATC
Found at i:17538099 original size:33 final size:32
Alignment explanation
Indices: 17537900--17538108 Score: 133
Period size: 33 Copynumber: 6.4 Consensus size: 32
17537890 TCAAAATCTG
* *
17537900 AAAATGAAATGAT-TTAGACTAAGCCAAAGTCA
1 AAAATGAAATGATCTTAGATTAAG-CAAAGTTA
* *
17537932 AAACATAAAATGATCTTA-AATAAGCTAAAGTCTA
1 AAA-ATGAAATGATCTTAGATTAAGC-AAAGT-TA
* * *
17537966 AAAATGAAATTATCTGA-ATTAAGCTAAAGTTG
1 AAAATGAAATGATCTTAGATTAAGC-AAAGTTA
* *** *
17537998 AAAATGAAATGA-CTTAGACTAAATTTAAGTATG
1 AAAATGAAATGATCTTAGA-TTAAGCAAAGT-TA
* * * * *
17538031 AAAATAAAATGA-CTTTGATTGAACCGAAGTAAA
1 AAAATGAAATGATCTTAGATT-AAGCAAAGT-TA
17538064 AAAATGAAATGATC-TAGATTAAGTCAAAGTTA
1 AAAATGAAATGATCTTAGATTAAG-CAAAGTTA
17538096 AAAATGAAATGAT
1 AAAATGAAATGAT
17538109 TGGACTAAAC
Statistics
Matches: 140, Mismatches: 27, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
31 3 0.02
32 38 0.27
33 91 0.65
34 8 0.06
ACGTcount: A:0.51, C:0.08, G:0.14, T:0.27
Consensus pattern (32 bp):
AAAATGAAATGATCTTAGATTAAGCAAAGTTA
Found at i:17538158 original size:97 final size:98
Alignment explanation
Indices: 17537965--17538164 Score: 237
Period size: 97 Copynumber: 2.1 Consensus size: 98
17537955 GCTAAAGTCT
* * ***
17537965 AAAAATGAAATTATCTGAATTAAGCTAAAGTTGAAAATGAAATGACTTAGACTAAATTTAAGTAT
1 AAAAATGAAATGATCTGAATTAAGCTAAAGTTAAAAATGAAATGACTTAGACTAAACAGAAGTAT
* *
17538030 GAAAATAAAATGACTTTGATTGAACCGAAGTAA
66 GAAAATAAAATGACTTAGATTGAACAGAAGTAA
*
17538063 AAAAATGAAATGATCT-AGATTAAG-TCAAAGTTAAAAATGAAATGA-TTGGACTAAACAGATA-
1 AAAAATGAAATGATCTGA-ATTAAGCT-AAAGTTAAAAATGAAATGACTTAGACTAAACAGA-AG
* * * *
17538124 TCTGTAAATAAAATGACTTAGATTGAATATAAGTAA
63 TATGAAAATAAAATGACTTAGATTGAACAGAAGTAA
17538160 AAAAA
1 AAAAA
17538165 AATAAAATGA
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
97 47 0.54
98 40 0.46
ACGTcount: A:0.51, C:0.07, G:0.15, T:0.28
Consensus pattern (98 bp):
AAAAATGAAATGATCTGAATTAAGCTAAAGTTAAAAATGAAATGACTTAGACTAAACAGAAGTAT
GAAAATAAAATGACTTAGATTGAACAGAAGTAA
Found at i:17538163 original size:98 final size:99
Alignment explanation
Indices: 17537965--17538198 Score: 239
Period size: 98 Copynumber: 2.4 Consensus size: 99
17537955 GCTAAAGTCT
* * ***
17537965 AAAAATGAAATTATCT-GAATTAAGCTAAAGTTGAAAATGAAATGACTTAGACTAAATTTAAGTA
1 AAAAATGAAATGATCTAG-ATTAAGCTAAAGTTAAAAATGAAATGACTTAGACTAAACAGAAGTA
* *
17538029 TGAAAATAAAATGACTTTGATTGAACCGAAGT-AA
65 TGAAAATAAAATGACTTAGATTGAACAGAAGTAAA
*
17538063 AAAAATGAAATGATCTAGATTAAG-TCAAAGTTAAAAATGAAATGA-TTGGACTAAACAGATA-T
1 AAAAATGAAATGATCTAGATTAAGCT-AAAGTTAAAAATGAAATGACTTAGACTAAACAGA-AGT
* * * *
17538125 CTGTAAATAAAATGACTTAGATTGAATATAAGTAAAA
64 ATGAAAATAAAATGACTTAGATTGAACAGAAGT-AAA
* *
17538162 AAAAATAAAATGA-CTTAGATTGAA-CTAAAGTTTAAAA
1 AAAAATGAAATGATC-TAGATT-AAGCTAAAGTTAAAAA
17538199 GTGAGATAAA
Statistics
Matches: 114, Mismatches: 14, Indels: 15
0.80 0.10 0.10
Matches are distributed among these distances:
97 39 0.34
98 41 0.36
99 31 0.27
100 3 0.03
ACGTcount: A:0.51, C:0.06, G:0.15, T:0.28
Consensus pattern (99 bp):
AAAAATGAAATGATCTAGATTAAGCTAAAGTTAAAAATGAAATGACTTAGACTAAACAGAAGTAT
GAAAATAAAATGACTTAGATTGAACAGAAGTAAA
Found at i:17539603 original size:111 final size:110
Alignment explanation
Indices: 17539404--17539611 Score: 274
Period size: 111 Copynumber: 1.9 Consensus size: 110
17539394 AATGATGCCT
* * *
17539404 TAGTTTAATATATGATTATCTAATTGAACATTCTTATTCGATCAAAATGAACTTTTAAAGTACAC
1 TAGTTTAATATATGATTATCCAATTAAACATTCTCATTCGATCAAAATGAACTTTTAAAGTACAC
17539469 AACATAGGCTATGGTAAGAGGTTATGAAAAAAAATAGATAAAAAA
66 AACATAGGCTATGGTAAGAGGTTATGAAAAAAAATAGATAAAAAA
* * * *
17539514 TAGTTTATTATATGATTCTCCAATTTAAACATTCTCATTTGATCAAAAT-AGACTTTTAAGGTAC
1 TAGTTTAATATATGATTATCCAA-TTAAACATTCTCATTCGATCAAAATGA-ACTTTTAAAGTAC
** ** * *
17539578 GTATTATAGGCTATGGTGAGTGGTTATGAAAAAA
64 ACAACATAGGCTATGGTAAGAGGTTATGAAAAAA
17539612 TGGATAAAAT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
110 21 0.25
111 62 0.75
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (110 bp):
TAGTTTAATATATGATTATCCAATTAAACATTCTCATTCGATCAAAATGAACTTTTAAAGTACAC
AACATAGGCTATGGTAAGAGGTTATGAAAAAAAATAGATAAAAAA
Found at i:17543467 original size:13 final size:13
Alignment explanation
Indices: 17543441--17543507 Score: 66
Period size: 13 Copynumber: 5.2 Consensus size: 13
17543431 AAACAATTTC
*
17543441 ATAC-AAAATGTT
1 ATACAAAAATATT
17543453 ATACAAAAATATT
1 ATACAAAAATATT
*
17543466 ATGA-AAAAATATC
1 AT-ACAAAAATATT
* *
17543479 ATAGAAAAATATC
1 ATACAAAAATATT
*
17543492 ATGCAAAAATATT
1 ATACAAAAATATT
17543505 ATA
1 ATA
17543508 ATAGATTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
12 5 0.11
13 40 0.87
14 1 0.02
ACGTcount: A:0.58, C:0.07, G:0.06, T:0.28
Consensus pattern (13 bp):
ATACAAAAATATT
Found at i:17544179 original size:26 final size:25
Alignment explanation
Indices: 17544124--17544179 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
17544114 ATAAAAATCC
17544124 TAAAAATTCCAAAAGACTAGAAAAT
1 TAAAAATTCCAAAAGACTAGAAAAT
* *
17544149 AAAAAATTTCAAAAGCACTCA-AAAAT
1 TAAAAATTCCAAAAG-ACT-AGAAAAT
17544175 TAAAA
1 TAAAA
17544180 TACCTTTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
25 13 0.50
26 12 0.46
27 1 0.04
ACGTcount: A:0.62, C:0.12, G:0.05, T:0.20
Consensus pattern (25 bp):
TAAAAATTCCAAAAGACTAGAAAAT
Found at i:17544886 original size:20 final size:20
Alignment explanation
Indices: 17544863--17544901 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
17544853 GTTGACCTTG
* *
17544863 TTGATATAACATTGATTTTA
1 TTGACATAACATTAATTTTA
*
17544883 TTGACATGACATTAATTTT
1 TTGACATAACATTAATTTT
17544902 GCAGATATGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.08, G:0.10, T:0.49
Consensus pattern (20 bp):
TTGACATAACATTAATTTTA
Found at i:17547572 original size:10 final size:10
Alignment explanation
Indices: 17547557--17547606 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
17547547 TAAAAATGAA
17547557 TATATTTTAT
1 TATATTTTAT
17547567 TATATTTTAT
1 TATATTTTAT
*
17547577 TTTATTTT-T
1 TATATTTTAT
*
17547586 ATATAATTT-T
1 -TATATTTTAT
*
17547596 TATTTTTTAT
1 TATATTTTAT
17547606 T
1 T
17547607 TTTATAAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
9 7 0.21
10 26 0.79
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (10 bp):
TATATTTTAT
Found at i:17547589 original size:18 final size:17
Alignment explanation
Indices: 17547566--17547609 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
17547556 ATATATTTTA
17547566 TTATATTTTATTTTATTT
1 TTATATTTT-TTTTATTT
**
17547584 TTATATAATTTTTATTT
1 TTATATTTTTTTTATTT
17547601 TT-TATTTTT
1 TTATATTTTT
17547610 ATAAATATTG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 5 0.23
17 10 0.45
18 7 0.32
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (17 bp):
TTATATTTTTTTTATTT
Found at i:17547613 original size:22 final size:23
Alignment explanation
Indices: 17547561--17547618 Score: 66
Period size: 22 Copynumber: 2.5 Consensus size: 23
17547551 AATGAATATA
*
17547561 TTTTATTATATTTTATTTTATTT
1 TTTTATAATATTTTATTTTATTT
*
17547584 TTATATAAT-TTTTATTTT-TTAT
1 TTTTATAATATTTTATTTTATT-T
17547606 TTTTATAAATATT
1 TTTTAT-AATATT
17547619 GAATATAATC
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 2 0.07
22 15 0.52
23 10 0.34
24 2 0.07
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTATAATATTTTATTTTATTT
Found at i:17561226 original size:2 final size:2
Alignment explanation
Indices: 17561219--17561253 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
17561209 ATGGTCTTTG
17561219 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
17561254 AAAGAGATTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:17573886 original size:23 final size:24
Alignment explanation
Indices: 17573860--17573907 Score: 89
Period size: 23 Copynumber: 2.0 Consensus size: 24
17573850 ATATCATGCA
17573860 AAGCTTCAATTTTTGTGAA-CGTG
1 AAGCTTCAATTTTTGTGAACCGTG
17573883 AAGCTTCAATTTTTGTGAACCGTG
1 AAGCTTCAATTTTTGTGAACCGTG
17573907 A
1 A
17573908 CATTAGTTTG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
AAGCTTCAATTTTTGTGAACCGTG
Found at i:17582304 original size:14 final size:15
Alignment explanation
Indices: 17582280--17582308 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
17582270 GAAATATTAA
17582280 AATACTTTTAATATT
1 AATACTTTTAATATT
17582295 AATA-TTTTAATATT
1 AATACTTTTAATATT
17582309 TTAATTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.55
Consensus pattern (15 bp):
AATACTTTTAATATT
Found at i:17582339 original size:18 final size:20
Alignment explanation
Indices: 17582302--17582354 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 20
17582292 ATTAATATTT
*
17582302 TAATATTTTAATTAAAATTAAA
1 TAATATTTTTATTAAAA-T-AA
17582324 TAAAATATTTTTATTAAAATAA
1 T--AATATTTTTATTAAAATAA
17582346 TAATATTTT
1 TAATATTTT
17582355 AAGCCGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
20 8 0.29
22 4 0.14
23 1 0.04
24 15 0.54
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (20 bp):
TAATATTTTTATTAAAATAA
Found at i:17582586 original size:166 final size:165
Alignment explanation
Indices: 17582252--17582586 Score: 385
Period size: 166 Copynumber: 2.0 Consensus size: 165
17582242 AACATACAAA
* * *
17582252 ATAAAAATATTTAAAATTGAAATATTAAAATACTTTTAATATTAATATTTTAATATTTTAATTAA
1 ATAAAAATATTTAAAATTAAAATATTAAAAGACTTTTAATATTAATATTTTAATATTTTAAATAA
* * * **
17582317 AATTAAATAAAATATTTTTATTAAAATAATAATATTTTAAGCCGAATCAAATCAAGTTCGAGTTT
66 AATTAAATAAAATATTTTTATTAAAATAATAATATTTTAAGACGAATCAAATAAACTTCGAACTT
* *
17582382 AAAATATTATGTTCAAAGTCTTACTTGAATAGAATT
131 AAAATA-TATGTTCAAAGTCTGACTTGAATAAAATT
* *
17582418 ATAAAAATATTTAAAATTAAAATGTTAAGAGACTTTTAATATTAATATTTTAAT-TTTTAAAATA
1 ATAAAAATATTTAAAATTAAAATATTAAAAGACTTTTAATATTAATATTTTAATATTTT-AAATA
* * * * *
17582482 AAATTAAATAAAAATATTATTTATTAATATAATAATATTTTGGATATG-GTCAAATTAAACTT-G
65 AAATTAAAT-AAAATATT-TTTATTAAAATAATAATATTTT-AAGACGAATCAAA-TAAACTTCG
* *
17582545 AACTTAAAATA-ATGTAT-AAGGTCTGA-TTTAAGTAAAATT
126 AACTTAAAATATATGT-TCAAAGTCTGACTTGAA-TAAAATT
17582584 ATA
1 ATA
17582587 TTTATATATA
Statistics
Matches: 143, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
165 8 0.06
166 83 0.58
167 9 0.06
168 36 0.25
169 7 0.05
ACGTcount: A:0.48, C:0.04, G:0.07, T:0.41
Consensus pattern (165 bp):
ATAAAAATATTTAAAATTAAAATATTAAAAGACTTTTAATATTAATATTTTAATATTTTAAATAA
AATTAAATAAAATATTTTTATTAAAATAATAATATTTTAAGACGAATCAAATAAACTTCGAACTT
AAAATATATGTTCAAAGTCTGACTTGAATAAAATT
Found at i:17583132 original size:15 final size:16
Alignment explanation
Indices: 17583101--17583134 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
17583091 ATCTACAAAT
*
17583101 TATCATATAAAATTTA
1 TATCATATAAAAATTA
17583117 TATCAT-TAAAAATTA
1 TATCATATAAAAATTA
17583132 TAT
1 TAT
17583135 ATGACATAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (16 bp):
TATCATATAAAAATTA
Found at i:17583218 original size:11 final size:11
Alignment explanation
Indices: 17583202--17583226 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
17583192 TTTTAATCCT
17583202 TAAAAATTGGA
1 TAAAAATTGGA
17583213 TAAAAATTGGA
1 TAAAAATTGGA
17583224 TAA
1 TAA
17583227 TAACTTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (11 bp):
TAAAAATTGGA
Found at i:17592743 original size:4 final size:4
Alignment explanation
Indices: 17592726--17592816 Score: 57
Period size: 4 Copynumber: 23.2 Consensus size: 4
17592716 CTGCTCATTA
* * * *
17592726 AAAT ATAT ATAT AAAT AATT AAAT -AA- AAAT AAAT AAAAT ATAT ATAAT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT -AAAT AAAT A-AAT
* * *
17592774 AAA- AAAT AAAA AATAT AAAT ATAT AAA- AAAT AATT AAA- AAAT A
1 AAAT AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
17592817 TAAAAGACAT
Statistics
Matches: 67, Mismatches: 12, Indels: 16
0.71 0.13 0.17
Matches are distributed among these distances:
3 13 0.19
4 44 0.66
5 10 0.15
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
AAAT
Found at i:17592772 original size:29 final size:29
Alignment explanation
Indices: 17592725--17592820 Score: 101
Period size: 28 Copynumber: 3.3 Consensus size: 29
17592715 ACTGCTCATT
* *
17592725 AAAATATATATATAAATAATTAAATAAA-AA
1 AAAATATAAATATATATAA-TAAA-AAATAA
*
17592755 TAAATA-AAATATATATAATAAAAAATAA
1 AAAATATAAATATATATAATAAAAAATAA
*
17592783 AAAATATAAATATATA-AA-AAATAATTAA
1 AAAATATAAATATATATAATAAA-AAATAA
17592811 AAAATATAAA
1 AAAATATAAA
17592821 AGACATTAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
27 6 0.10
28 28 0.48
29 19 0.33
30 5 0.09
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (29 bp):
AAAATATAAATATATATAATAAAAAATAA
Found at i:17592776 original size:24 final size:24
Alignment explanation
Indices: 17592747--17592818 Score: 76
Period size: 23 Copynumber: 3.0 Consensus size: 24
17592737 TAAATAATTA
17592747 AATAAAAATAAATAAAATATATAT
1 AATAAAAATAAATAAAATATATAT
*
17592771 AATAAAAA-ATAA-AAAATATAAAT
1 AATAAAAATA-AATAAAATATATAT
* *
17592794 ATATAAAAAATAATTAAAAAATATA
1 A-AT-AAAAATAAATAAAATATATA
17592819 AAAGACATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
23 12 0.31
24 12 0.31
25 6 0.15
26 9 0.23
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (24 bp):
AATAAAAATAAATAAAATATATAT
Found at i:17592820 original size:9 final size:9
Alignment explanation
Indices: 17592748--17592852 Score: 61
Period size: 10 Copynumber: 10.6 Consensus size: 9
17592738 AAATAATTAA
*
17592748 ATAAAAATAA
1 ATAAAAA-AT
17592758 ATAAAATATAT
1 ATAAAA-A-AT
*
17592769 ATAATAAAAA
1 ATAA-AAAAT
17592779 ATAAAAAAT
1 ATAAAAAAT
*
17592788 AT-AAATAT
1 ATAAAAAAT
17592796 ATAAAAAAT
1 ATAAAAAAT
17592805 AATTAAAAAAT
1 -A-TAAAAAAT
17592816 ATAAAAGACAT
1 ATAAAA-A-AT
17592827 -TAAAATATAT
1 ATAAAA-A-AT
17592837 ATATAAAAATT
1 ATA-AAAAA-T
17592848 ATAAA
1 ATAAA
17592853 GGGACTTTGA
Statistics
Matches: 78, Mismatches: 7, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
8 7 0.09
9 16 0.21
10 25 0.32
11 25 0.32
12 5 0.06
ACGTcount: A:0.70, C:0.01, G:0.01, T:0.28
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:17594578 original size:15 final size:15
Alignment explanation
Indices: 17594544--17594583 Score: 57
Period size: 13 Copynumber: 2.8 Consensus size: 15
17594534 TAAGAGAATT
*
17594544 ATTAAATAAAAAAAG
1 ATTAAATAATAAAAG
17594559 A--AAATAATAAAAG
1 ATTAAATAATAAAAG
17594572 ATTAAATAATAA
1 ATTAAATAATAA
17594584 TAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
13 12 0.55
15 10 0.45
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (15 bp):
ATTAAATAATAAAAG
Found at i:17596602 original size:13 final size:11
Alignment explanation
Indices: 17596577--17596618 Score: 52
Period size: 12 Copynumber: 3.8 Consensus size: 11
17596567 AAGTTAAGAT
17596577 AAAAAAAGACA
1 AAAAAAAGACA
17596588 AATAAAAAGAGCA
1 AA-AAAAAGA-CA
17596601 AAAAAAA-A-A
1 AAAAAAAGACA
17596610 AAAAAAAGA
1 AAAAAAAGA
17596619 GAGAGTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
9 8 0.29
10 1 0.04
11 3 0.11
12 12 0.43
13 4 0.14
ACGTcount: A:0.83, C:0.05, G:0.10, T:0.02
Consensus pattern (11 bp):
AAAAAAAGACA
Found at i:17596621 original size:23 final size:23
Alignment explanation
Indices: 17596577--17596621 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
17596567 AAGTTAAGAT
* *
17596577 AAAAAAAGACAAATAAAAAGAGC
1 AAAAAAAGAAAAAAAAAAAGAGC
17596600 AAAAAAA-AAAAAAAAAAGAGAG
1 AAAAAAAGAAAAAAAAAA-AGAG
17596622 AGTTAAGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.80, C:0.04, G:0.13, T:0.02
Consensus pattern (23 bp):
AAAAAAAGAAAAAAAAAAAGAGC
Found at i:17597996 original size:4 final size:4
Alignment explanation
Indices: 17597980--17598039 Score: 77
Period size: 4 Copynumber: 15.0 Consensus size: 4
17597970 AAAAATTTTG
* * *
17597980 TCAT TCAT GCAT TCAT TCAT TCAT TCAT TCAT TCA- TCTAT CCAT CCAT
1 TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TCAT TC-AT TCAT TCAT
17598028 TCAT TCAT TCAT
1 TCAT TCAT TCAT
17598040 CTATCCATCC
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
3 2 0.04
4 47 0.94
5 1 0.02
ACGTcount: A:0.25, C:0.28, G:0.02, T:0.45
Consensus pattern (4 bp):
TCAT
Found at i:17598028 original size:24 final size:24
Alignment explanation
Indices: 17598001--17598052 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
17597991 TTCATTCATT
17598001 CATTCATTCATTCATCTATCCATC
1 CATTCATTCATTCATCTATCCATC
17598025 CATTCATTCATTCATCTATCCATC
1 CATTCATTCATTCATCTATCCATC
17598049 CATT
1 CATT
17598053 TATGTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (24 bp):
CATTCATTCATTCATCTATCCATC
Found at i:17600513 original size:23 final size:22
Alignment explanation
Indices: 17600483--17600557 Score: 80
Period size: 22 Copynumber: 3.4 Consensus size: 22
17600473 AAACAACAAC
* *
17600483 AAAAAAAACAAAA-ATTAAAAATT
1 AAAAAAAACAAAACAAT-AAAA-G
*
17600506 AAAAAAAATAAAACAATAAAAG
1 AAAAAAAACAAAACAATAAAAG
* *
17600528 AAAAAAAACAAAAGAACAAAAG
1 AAAAAAAACAAAACAATAAAAG
17600550 AAAAAAAA
1 AAAAAAAA
17600558 AAGGAAAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
22 27 0.60
23 16 0.36
24 2 0.04
ACGTcount: A:0.83, C:0.05, G:0.04, T:0.08
Consensus pattern (22 bp):
AAAAAAAACAAAACAATAAAAG
Found at i:17600525 original size:17 final size:17
Alignment explanation
Indices: 17600492--17600538 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
17600482 CAAAAAAAAC
* *
17600492 AAAAATTAAAA-ATTAA
1 AAAAAATAAAACAATAA
17600508 AAAAAATAAAACAATAA
1 AAAAAATAAAACAATAA
17600525 AAGAAAA-AAAACAA
1 AA-AAAATAAAACAA
17600539 AAGAACAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 10 0.37
17 13 0.48
18 4 0.15
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (17 bp):
AAAAAATAAAACAATAA
Found at i:17600569 original size:11 final size:11
Alignment explanation
Indices: 17600506--17600571 Score: 53
Period size: 11 Copynumber: 5.7 Consensus size: 11
17600496 ATTAAAAATT
*
17600506 AAAAAAAATAA
1 AAAAAAAAGAA
17600517 AACAATAAAAGAA
1 AA-AA-AAAAGAA
17600530 AAAAAACAA-AA
1 AAAAAA-AAGAA
* *
17600541 GAACAAAAGAA
1 AAAAAAAAGAA
17600552 AAAAAAAAGGAA
1 AAAAAAAA-GAA
*
17600564 AGAAAAAA
1 AAAAAAAA
17600572 TGGTTATGAT
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
10 2 0.05
11 18 0.41
12 16 0.36
13 8 0.18
ACGTcount: A:0.83, C:0.05, G:0.09, T:0.03
Consensus pattern (11 bp):
AAAAAAAAGAA
Found at i:17601085 original size:5 final size:6
Alignment explanation
Indices: 17601066--17601150 Score: 66
Period size: 6 Copynumber: 13.2 Consensus size: 6
17601056 GAATCCATTT
17601066 AAAGAA AAAGAA AAAGAA AAAGTGAA AGAATGAA AAA-AA AAAGAA AAAGATGA
1 AAAGAA AAAGAA AAAGAA AAA--GAA A-AA-GAA AAAGAA AAAGAA AAAGA--A
* *
17601119 AGAGAA AAAG-A AAAGAA GGAAAGCA AAAGAA A
1 AAAGAA AAAGAA AAAGAA --AAAGAA AAAGAA A
17601151 TGAATGGGTG
Statistics
Matches: 66, Mismatches: 4, Indels: 18
0.75 0.05 0.20
Matches are distributed among these distances:
5 10 0.15
6 33 0.50
7 2 0.03
8 19 0.29
9 2 0.03
ACGTcount: A:0.74, C:0.01, G:0.21, T:0.04
Consensus pattern (6 bp):
AAAGAA
Found at i:17601141 original size:27 final size:26
Alignment explanation
Indices: 17601067--17601135 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 26
17601057 AATCCATTTA
17601067 AAGAAAAAGAAAAAGAAAAAGTGAAAG
1 AAGAAAAAG-AAAAGAAAAAGTGAAAG
*
17601094 AATGAAAAAAAAAAGAAAAAGATG-AAG
1 AA-GAAAAAGAAAAGAAAAAG-TGAAAG
17601121 -AGAAAAAGAAAAGAA
1 AAGAAAAAGAAAAGAA
17601136 GGAAAGCAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
25 13 0.34
26 1 0.03
27 16 0.42
28 8 0.21
ACGTcount: A:0.75, C:0.00, G:0.20, T:0.04
Consensus pattern (26 bp):
AAGAAAAAGAAAAGAAAAAGTGAAAG
Found at i:17607299 original size:22 final size:23
Alignment explanation
Indices: 17607282--17607388 Score: 73
Period size: 22 Copynumber: 4.8 Consensus size: 23
17607272 ATAATAAATG
17607282 AAGAAAAAAA-GATAAATAAAAA
1 AAGAAAAAAATGATAAATAAAAA
* *
17607304 AATAAAAAAATGATAAAAATGAAAA
1 AAGAAAAAAATGAT--AAATAAAAA
* *
17607329 AAGAGAAAAAA-GAGAAA-ATAAA
1 AAGA-AAAAAATGATAAATAAAAA
* *
17607351 ATGAAAAAAATGA-AAA-AAAAT
1 AAGAAAAAAATGATAAATAAAAA
* *
17607372 GA-AAAAAAATGAAAAAT
1 AAGAAAAAAATGATAAAT
17607389 GTGAAAAAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
20 10 0.15
21 15 0.22
22 17 0.25
23 6 0.09
25 13 0.19
26 6 0.09
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (23 bp):
AAGAAAAAAATGATAAATAAAAA
Found at i:17607300 original size:25 final size:23
Alignment explanation
Indices: 17607271--17607360 Score: 71
Period size: 22 Copynumber: 3.8 Consensus size: 23
17607261 GGGAGATATC
17607271 AATAATAAATGAAGAAAAAAAGATA
1 AATAATAAA--AAGAAAAAAAGATA
*
17607296 AATAA-AAAAATAAAAAAATGATA
1 AATAATAAAAAGAAAAAAA-GATA
*
17607319 AA-AATGAAAAAAGAGAAAAAAGA-G
1 AATAAT--AAAAAGA-AAAAAAGATA
*
17607343 AA-AATAAAATGAAAAAAA
1 AATAATAAAAAGAAAAAAA
17607361 TGAAAAAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
21 6 0.11
22 17 0.30
23 6 0.11
24 8 0.14
25 13 0.23
26 6 0.11
ACGTcount: A:0.77, C:0.00, G:0.11, T:0.12
Consensus pattern (23 bp):
AATAATAAAAAGAAAAAAAGATA
Found at i:17607313 original size:9 final size:9
Alignment explanation
Indices: 17607295--17607387 Score: 64
Period size: 10 Copynumber: 10.0 Consensus size: 9
17607285 AAAAAAAGAT
17607295 AAAT-AAAA
1 AAATAAAAA
17607303 AAAT-AAAA
1 AAATAAAAA
* *
17607311 AAATGATAA
1 AAATAAAAA
17607320 AAATGAAAAA
1 AAAT-AAAAA
* *
17607330 AGAGAAAAA
1 AAATAAAAA
* *
17607339 AGAGAAAATA
1 AAATAAAA-A
*
17607349 AAATGAAAA
1 AAATAAAAA
17607358 AAATGAAAAA
1 AAAT-AAAAA
17607368 AAATGAAAAA
1 AAAT-AAAAA
17607378 AAATGAAAAA
1 AAAT-AAAAA
17607388 TGTGAAAAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
8 12 0.17
9 25 0.35
10 35 0.49
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.11
Consensus pattern (9 bp):
AAATAAAAA
Found at i:17607352 original size:29 final size:29
Alignment explanation
Indices: 17607319--17607405 Score: 99
Period size: 29 Copynumber: 3.0 Consensus size: 29
17607309 AAAAATGATA
17607319 AAAATGAAAAAAGAGAAAAAAGAGAAAAT
1 AAAATGAAAAAAGAGAAAAAAGAGAAAAT
*
17607348 AAAATGAAAAAA-ATGAAAAAAAATGAAAA-
1 AAAATGAAAAAAGA-GAAAAAAGA-GAAAAT
* *
17607377 AAAATGAAAAATGTGAAAAAATGA-AAAAT
1 AAAATGAAAAAAGAGAAAAAA-GAGAAAAT
17607406 GTGAAAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
28 5 0.10
29 38 0.78
30 6 0.12
ACGTcount: A:0.75, C:0.00, G:0.14, T:0.11
Consensus pattern (29 bp):
AAAATGAAAAAAGAGAAAAAAGAGAAAAT
Found at i:17607360 original size:48 final size:49
Alignment explanation
Indices: 17607282--17607387 Score: 130
Period size: 49 Copynumber: 2.2 Consensus size: 49
17607272 ATAATAAATG
*
17607282 AAGAAAAAAAGATAAATAAAAAAATAAAAAAATG-ATAAAAATGAAAAAA
1 AAGAAAAAAAGATAAAT-AAAAAATAAAAAAATGAAAAAAAATGAAAAAA
*
17607331 GAGAAAAAAGAGA-AAAT--AAAATGAAAAAAATGAAAAAAAATGAAAAAA
1 AAGAAAAAA-AGATAAATAAAAAAT-AAAAAAATGAAAAAAAATGAAAAAA
17607379 AATGAAAAA
1 AA-GAAAAA
17607388 TGTGAAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
46 5 0.10
47 9 0.18
48 15 0.30
49 18 0.36
50 3 0.06
ACGTcount: A:0.78, C:0.00, G:0.11, T:0.10
Consensus pattern (49 bp):
AAGAAAAAAAGATAAATAAAAAATAAAAAAATGAAAAAAAATGAAAAAA
Found at i:17607419 original size:9 final size:9
Alignment explanation
Indices: 17607295--17607427 Score: 132
Period size: 9 Copynumber: 14.7 Consensus size: 9
17607285 AAAAAAAGAT
17607295 AAAT-AAAA
1 AAATGAAAA
17607303 AAAT-AAAA
1 AAATGAAAA
*
17607311 AAATGATAA
1 AAATGAAAA
17607320 AAATGAAAA
1 AAATGAAAA
17607329 AAGA-GAAAA
1 AA-ATGAAAA
17607338 AAGA-GAAAATA
1 AA-ATG-AAA-A
17607349 AAATGAAAA
1 AAATGAAAA
17607358 AAATGAAAAA
1 AAATG-AAAA
17607368 AAATGAAAAA
1 AAATG-AAAA
17607378 AAATGAAAA
1 AAATGAAAA
**
17607387 ATGTG-AAA
1 AAATGAAAA
17607395 AAATGAAAA
1 AAATGAAAA
**
17607404 ATGTGAAAA
1 AAATGAAAA
17607413 AAATGAAAA
1 AAATGAAAA
17607422 AAATGA
1 AAATGA
17607428 GGGAAAATGA
Statistics
Matches: 108, Mismatches: 10, Indels: 13
0.82 0.08 0.10
Matches are distributed among these distances:
8 18 0.17
9 59 0.55
10 27 0.25
11 4 0.04
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (9 bp):
AAATGAAAA
Found at i:17608587 original size:21 final size:21
Alignment explanation
Indices: 17608561--17608669 Score: 101
Period size: 21 Copynumber: 4.8 Consensus size: 21
17608551 GTTAAAAGTG
*
17608561 ATGAGAATATTTGAATTTTAA
1 ATGAGAATCTTTGAATTTTAA
*
17608582 ATGAGAATCTTTAAATTTTAA
1 ATGAGAATCTTTGAATTTTAA
*
17608603 ATGAGAATCTTTGTCTTTGAGTTTTAA
1 ATGAGAA------TCTTTGAATTTTAA
*
17608630 ATAAGAATCTTTAAGAAATTTTAA
1 ATGAGAATCTTT--G-AATTTTAA
17608654 ATGAGAATCTTTGAAT
1 ATGAGAATCTTTGAAT
17608670 GAGAATCTTT
Statistics
Matches: 72, Mismatches: 7, Indels: 18
0.74 0.07 0.19
Matches are distributed among these distances:
21 34 0.47
22 1 0.01
23 1 0.01
24 18 0.25
27 18 0.25
ACGTcount: A:0.39, C:0.05, G:0.14, T:0.42
Consensus pattern (21 bp):
ATGAGAATCTTTGAATTTTAA
Found at i:17608619 original size:27 final size:27
Alignment explanation
Indices: 17608589--17608666 Score: 81
Period size: 27 Copynumber: 3.0 Consensus size: 27
17608579 TAAATGAGAA
17608589 TCTTTAAATTTTAAATGAGAATCTTTG
1 TCTTTAAATTTTAAATGAGAATCTTTG
* * *
17608616 TCTTTGAGTTTTAAATAAGAATC-TT-
1 TCTTTAAATTTTAAATGAGAATCTTTG
***
17608641 T-AAGAAATTTTAAATGAGAATCTTTG
1 TCTTTAAATTTTAAATGAGAATCTTTG
17608667 AATGAGAATC
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
24 15 0.38
25 3 0.08
26 2 0.05
27 20 0.50
ACGTcount: A:0.36, C:0.06, G:0.13, T:0.45
Consensus pattern (27 bp):
TCTTTAAATTTTAAATGAGAATCTTTG
Found at i:17609036 original size:33 final size:33
Alignment explanation
Indices: 17608999--17609064 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
17608989 AACTTTAAAT
17608999 GCTTGCGAACCTTAAATGCTTGCAAATATGAAA
1 GCTTGCGAACCTTAAATGCTTGCAAATATGAAA
* * * * *
17609032 GCTTGTGAACTTTAGATTCTTGCAAATTTGAAA
1 GCTTGCGAACCTTAAATGCTTGCAAATATGAAA
17609065 AATCTTATGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.33
Consensus pattern (33 bp):
GCTTGCGAACCTTAAATGCTTGCAAATATGAAA
Found at i:17610446 original size:24 final size:24
Alignment explanation
Indices: 17610410--17610458 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 24
17610400 TTTGTTTTGG
* *
17610410 TATTCTTTCTTTTATGGTTTTTATT
1 TATTCTTTATTTTAT-GTTATTATT
17610435 TATT-TTTATTTTATGTTATTATT
1 TATTCTTTATTTTATGTTATTATT
17610458 T
1 T
17610459 CCTTTATTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 9 0.41
24 9 0.41
25 4 0.18
ACGTcount: A:0.16, C:0.04, G:0.06, T:0.73
Consensus pattern (24 bp):
TATTCTTTATTTTATGTTATTATT
Found at i:17611430 original size:15 final size:16
Alignment explanation
Indices: 17611396--17611430 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
17611386 TATTAAACAA
17611396 AAAATACAAAAAATAG
1 AAAATACAAAAAATAG
*
17611412 AAAATACAAGAAA-AG
1 AAAATACAAAAAATAG
17611427 AAAA
1 AAAA
17611431 GAAAAGAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.77, C:0.06, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAATACAAAAAATAG
Found at i:17618823 original size:35 final size:35
Alignment explanation
Indices: 17618780--17618902 Score: 147
Period size: 35 Copynumber: 3.4 Consensus size: 35
17618770 GTATTTTTGA
*
17618780 AAAAGACATTTACATTTCATGTACATCATTTTAAG
1 AAAAGACATTTGCATTTCATGTACATCATTTTAAG
* * * *
17618815 AAATGACATTTGTATTTTATGTACATCATTTTAGG
1 AAAAGACATTTGCATTTCATGTACATCATTTTAAG
* *
17618850 AAAAGACATTTGCATTTCATTTGCATCATCATTTGAAG
1 AAAAGACATTTGCATTTCA--TGTA-CATCATTTTAAG
*
17618888 AGAAGACATTTGCAT
1 AAAAGACATTTGCAT
17618903 AATAATGGTG
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
35 46 0.63
37 3 0.04
38 24 0.33
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (35 bp):
AAAAGACATTTGCATTTCATGTACATCATTTTAAG
Found at i:17619289 original size:82 final size:83
Alignment explanation
Indices: 17619151--17619340 Score: 240
Period size: 82 Copynumber: 2.3 Consensus size: 83
17619141 TTTCATTTTC
* *
17619151 TTGGTGGTGATATCC-AAGACATTTTCAAAATCACTCAATGGTGATATCAGAGTTTAAACTTTGA
1 TTGGTGGTGATATCCAAAGTCA-TTTCAAAATCACTCAATAGTGATATCAGAGTTTAAACTTTGA
*
17619215 ATTTGCACTTATATTTAAT
65 ATTTGCACTTATAATTAAT
* ** * *
17619234 TTGGTGGCGATATCCAAAGTCA-TTCAAAATCACTTGATAGTGATATCCGAGTTTAAAGTTTGAA
1 TTGGTGGTGATATCCAAAGTCATTTCAAAATCACTCAATAGTGATATCAGAGTTTAAACTTTGAA
* **
17619298 TTTGCACTTGTAATTCCT
66 TTTGCACTTATAATTAAT
* *
17619316 TTAGTGGTGATATCCAAAGTTATTT
1 TTGGTGGTGATATCCAAAGTCATTT
17619341 GCATCTTCTT
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
82 70 0.77
83 16 0.18
84 5 0.05
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (83 bp):
TTGGTGGTGATATCCAAAGTCATTTCAAAATCACTCAATAGTGATATCAGAGTTTAAACTTTGAA
TTTGCACTTATAATTAAT
Found at i:17619552 original size:100 final size:96
Alignment explanation
Indices: 17619337--17619561 Score: 263
Period size: 100 Copynumber: 2.3 Consensus size: 96
17619327 ATCCAAAGTT
* * *
17619337 ATTTGCATCTTCTTAGTGGTGATATCCGAGTATTAAGGAATTGCATTTTCTTGATGGTGATATTC
1 ATTTACATATTCTTAGTGGTGATATCCGAGTATTAAGGAATTGCATTTTCTCGATGGTGATATTC
* * *
17619402 GAGTTTCTTTTCAGTGGCGATATCTGAAATC
66 GAGTTTCTCTTCAATGGCAATATCTGAAATC
* * *
17619433 ATTTACATATTCTTAGTGGTGATATCTGAGTATTAAGACTTGAGTTGTATTTTCTCGATGGTGAT
1 ATTTACATATTCTTAGTGGTGATATCCGAGTATTAAG----GAATTGCATTTTCTCGATGGTGAT
* * *
17619498 ATTTGAGTTTC-CTTCAATGGTAATATCTGAAGTC
62 ATTCGAGTTTCTCTTCAATGGCAATATCTGAAATC
* * *
17619532 ATTTTCATTTTCTTTGGTGGTGATATCCGA
1 ATTTACATATTC-TTAGTGGTGATATCCGA
17619562 AGTCATTTGC
Statistics
Matches: 108, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
96 34 0.31
99 28 0.26
100 46 0.43
ACGTcount: A:0.23, C:0.12, G:0.21, T:0.44
Consensus pattern (96 bp):
ATTTACATATTCTTAGTGGTGATATCCGAGTATTAAGGAATTGCATTTTCTCGATGGTGATATTC
GAGTTTCTCTTCAATGGCAATATCTGAAATC
Found at i:17619591 original size:33 final size:33
Alignment explanation
Indices: 17619515--17619591 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 33
17619505 TTTCCTTCAA
* * *
17619515 TGGTAATATCTGAAGTCATTTTCATTTTCTTTGG
1 TGGTAATATCCGAAGTCATTTGCATTTTC-TCGG
*
17619549 TGGTGATATCCGAAGTCATTTGCATCTTTC-CGG
1 TGGTAATATCCGAAGTCATTTGCAT-TTTCTCGG
17619582 TGGTAATATC
1 TGGTAATATC
17619592 TGAGTGTTAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
33 11 0.30
34 22 0.59
35 4 0.11
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.43
Consensus pattern (33 bp):
TGGTAATATCCGAAGTCATTTGCATTTTCTCGG
Found at i:17619658 original size:24 final size:23
Alignment explanation
Indices: 17619615--17619660 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
17619605 TTGAATTGCA
* *
17619615 TTTTCTTGATGGTGATATTCGAG
1 TTTTCTTCATGGCGATATTCGAG
17619638 TTTTCTTCAGTGGCGATATTCGA
1 TTTTCTTCA-TGGCGATATTCGA
17619661 AATCATTTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.17, C:0.13, G:0.24, T:0.46
Consensus pattern (23 bp):
TTTTCTTCATGGCGATATTCGAG
Found at i:17619667 original size:133 final size:132
Alignment explanation
Indices: 17619448--17619693 Score: 325
Period size: 133 Copynumber: 1.9 Consensus size: 132
17619438 CATATTCTTA
* * * *
17619448 GTGGTGATATCTGAGTATTAAGACTTGAGTTGTATTTTCTCGATGGTGATATTTGAGTTTCCTTC
1 GTGGTAATATCTGAGTATTAAGACTTGAATTGCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
* * * * *
17619513 AATGGTAATATCTGAAGTCATTTTCATTTTCTTTGGTGGTGATATCCGAAGTCATTTGCATCTTT
66 AATGGCAATATCTGAAATCATTTGCATTTTC-TCGGTGGTAATATCCGAAGTCATTTGCATCTTT
17619578 CCG
130 CCG
* * *
17619581 GTGGTAATATCTGAGTGTTAA-AGCTTGAATTGCATTTTCTTGATGGTGATATTCGAGTTTTCTT
1 GTGGTAATATCTGAGTATTAAGA-CTTGAATTGCATTTTCTCGATGGTGATATTCGAGTTTCCTT
* *
17619645 CAGTGGCGATAT-TCGAAATCATTTGCATTTTCTCGGTGGTAATATCCGA
65 CAATGGCAATATCT-GAAATCATTTGCATTTTCTCGGTGGTAATATCCGA
17619694 TTGTTAAGGC
Statistics
Matches: 97, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
132 17 0.18
133 80 0.82
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (132 bp):
GTGGTAATATCTGAGTATTAAGACTTGAATTGCATTTTCTCGATGGTGATATTCGAGTTTCCTTC
AATGGCAATATCTGAAATCATTTGCATTTTCTCGGTGGTAATATCCGAAGTCATTTGCATCTTTC
CG
Found at i:17619713 original size:99 final size:100
Alignment explanation
Indices: 17619539--17619898 Score: 442
Period size: 99 Copynumber: 3.6 Consensus size: 100
17619529 GTCATTTTCA
** * * * * *
17619539 TTTTCTTTGGTGGTGATATCCGAAGTCATTTGCATCTTTC-CGGTGGTAATATCTGAGTGTTAAA
1 TTTTCTTCAGTGGTGATATTCGAAATCATTTGCATCTTTCTCAGTGGTAATATCCGAGTGTTAAG
17619603 GCTTGAATTGCATTTTCTTGATGGTGATATTCGAG
66 GCTTGAATTGCATTTTCTTGATGGTGATATTCGAG
* * *
17619638 TTTTCTTCAGTGGCGATATTCGAAATCATTTGCAT-TTTCTCGGTGGTAATATCCGATTGTTAAG
1 TTTTCTTCAGTGGTGATATTCGAAATCATTTGCATCTTTCTCAGTGGTAATATCCGAGTGTTAAG
*
17619702 GCTTGAGTTGCATTTTCTTGATGGTGATATTCGAG
66 GCTTGAATTGCATTTTCTTGATGGTGATATTCGAG
* * * * * * * *
17619737 TTTCCTTCAATAGTGATATTTGAAATCATTTGCATCTTT-TCAGTAGTGATATCCAAGTGGTAAG
1 TTTTCTTCAGTGGTGATATTCGAAATCATTTGCATCTTTCTCAGTGGTAATATCCGAGTGTTAAG
* * * *
17619801 GCTTGAATTGTATTTTCTCGATAGTGATATTTGAG
66 GCTTGAATTGCATTTTCTTGATGGTGATATTCGAG
* * *
17619836 TTTTCTTCAGTGGTGATA-TCTGAAATTATTTGCAT-TTTGTCAGTGGTGATATCCGAGTGTTAA
1 TTTTCTTCAGTGGTGATATTC-GAAATCATTTGCATCTTTCTCAGTGGTAATATCCGAGTGTTAA
17619899 AAATCATTTG
Statistics
Matches: 224, Mismatches: 33, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
98 8 0.04
99 213 0.95
100 3 0.01
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.43
Consensus pattern (100 bp):
TTTTCTTCAGTGGTGATATTCGAAATCATTTGCATCTTTCTCAGTGGTAATATCCGAGTGTTAAG
GCTTGAATTGCATTTTCTTGATGGTGATATTCGAG
Found at i:17619727 original size:232 final size:229
Alignment explanation
Indices: 17619314--17619792 Score: 615
Period size: 232 Copynumber: 2.1 Consensus size: 229
17619304 CTTGTAATTC
* * *
17619314 CTTTAGTGGTGATATCCAAAGTTATTTGCATCTTCTTAGTGGTGATATCCGAGTATTAAGGAATT
1 CTTTAGTGGTGATATCCAAAGTCATTTGCATCTTCTCAGTGGTAATATCCGAGTATTAAGGAATT
*
17619379 GCATTTTCTTGATGGTGATATTCGAGTTTCTTTTCAGTGGCGATATCTGAAATCATTTACATATT
66 GCATTTTCTTGATGGTGATATTCGAGTTTCTCTTCAGTGGCGATATCTGAAATCATTTACATATT
* * * * *
17619444 CTTAGTGGTGATATCTGAGTATTAAGACTTGAGTTGTATTTTCTCGATGGTGATATTTGAGTTTC
131 CTCAGTGGTAATATCCGAGTATTAAGACTTGAGTTGCATTTTCTCGATGGTGATATTCGAGTTTC
* *
17619509 CTTCAATGGTAATATCTGAAGTCATTTTCATTTT
196 CTTCAATAGTAATATCTGAAATCATTTTCATTTT
* * * * *
17619543 CTTTGGTGGTGATATCCGAAGTCATTTGCATCTT-TCCGGTGGTAATATCTGAGTGTTAAAGCTT
1 CTTTAGTGGTGATATCCAAAGTCATTTGCATCTTCT-CAGTGGTAATATCCGAGTATT-AAG---
*
17619607 GAATTGCATTTTCTTGATGGTGATATTCGAGTTT-TCTTCAGTGGCGATAT-TCGAAATCATTTG
61 GAATTGCATTTTCTTGATGGTGATATTCGAGTTTCTCTTCAGTGGCGATATCT-GAAATCATTTA
* * * * * *
17619670 CATTTTCTCGGTGGTAATATCCGATTGTTAAGGCTTGAGTTGCATTTTCTTGATGGTGATATTCG
125 CATATTCTCAGTGGTAATATCCGAGTATTAAGACTTGAGTTGCATTTTCTCGATGGTGATATTCG
* * * *
17619735 AGTTTCCTTCAATAGTGATATTTGAAATCATTTGCATCTT
190 AGTTTCCTTCAATAGTAATATCTGAAATCATTTTCATTTT
* *
17619775 -TTCAGTAGTGATATCCAA
1 CTTTAGTGGTGATATCCAA
17619793 GTGGTAAGGC
Statistics
Matches: 213, Mismatches: 31, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
228 1 0.00
229 47 0.22
230 3 0.01
231 15 0.07
232 113 0.53
233 34 0.16
ACGTcount: A:0.23, C:0.13, G:0.21, T:0.43
Consensus pattern (229 bp):
CTTTAGTGGTGATATCCAAAGTCATTTGCATCTTCTCAGTGGTAATATCCGAGTATTAAGGAATT
GCATTTTCTTGATGGTGATATTCGAGTTTCTCTTCAGTGGCGATATCTGAAATCATTTACATATT
CTCAGTGGTAATATCCGAGTATTAAGACTTGAGTTGCATTTTCTCGATGGTGATATTCGAGTTTC
CTTCAATAGTAATATCTGAAATCATTTTCATTTT
Found at i:17620034 original size:74 final size:75
Alignment explanation
Indices: 17619875--17620037 Score: 197
Period size: 74 Copynumber: 2.2 Consensus size: 75
17619865 TTGCATTTTG
* * *
17619875 TCAGTGGTGATATCCGAGTGTTAAAAATCATTTGCAATTTCTTTGATGGTGATATCCGAAGTCAT
1 TCAGTAGTGATATCCGAGTGTTAAAAATCATTTGCAATTTCTTAGATGGCGATATCCGAAGTCAT
***
17619940 TTGCATCATC
66 TCAAATCATC
* * * *
17619950 TCAGTGGTGATATCCGAGTGTTAAAAATCA-TTGTATTTTCTTCAG-TGGCGATATTCGAAGTCA
1 TCAGTAGTGATATCCGAGTGTTAAAAATCATTTGCAATTTCTT-AGATGGCGATATCCGAAGTCA
17620013 TTCAAATCATC
65 TTCAAATCATC
17620024 TC-GATAGTGATATC
1 TCAG-TAGTGATATC
17620038 TGAGATCATT
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
73 1 0.01
74 45 0.58
75 31 0.40
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (75 bp):
TCAGTAGTGATATCCGAGTGTTAAAAATCATTTGCAATTTCTTAGATGGCGATATCCGAAGTCAT
TCAAATCATC
Found at i:17620570 original size:26 final size:26
Alignment explanation
Indices: 17620528--17620593 Score: 91
Period size: 25 Copynumber: 2.6 Consensus size: 26
17620518 ATTAATTTAT
*
17620528 TAAACAAAAATACAAAAAAATAGAA-A
1 TAAACAAAAA-ACAAAAAAATACAAGA
17620554 TAAACAAAAAACAAAAAAATACAAGA
1 TAAACAAAAAACAAAAAAATACAAGA
*
17620580 -AAAAAAAAAACAAA
1 TAAACAAAAAACAAA
17620594 GGGGGCAGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
25 26 0.70
26 11 0.30
ACGTcount: A:0.80, C:0.09, G:0.03, T:0.08
Consensus pattern (26 bp):
TAAACAAAAAACAAAAAAATACAAGA
Found at i:17620573 original size:19 final size:19
Alignment explanation
Indices: 17620539--17620589 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
17620529 AAACAAAAAT
* *
17620539 ACAAAAAAATAGAAATA-A
1 ACAAAAAAAAAAAAATACA
17620557 ACAAAAAACAAAAAAATACA
1 ACAAAAAA-AAAAAAATACA
*
17620577 AGAAAAAAAAAAA
1 ACAAAAAAAAAAA
17620590 CAAAGGGGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 8 0.29
19 12 0.43
20 8 0.29
ACGTcount: A:0.82, C:0.08, G:0.04, T:0.06
Consensus pattern (19 bp):
ACAAAAAAAAAAAAATACA
Found at i:17623012 original size:22 final size:22
Alignment explanation
Indices: 17622955--17623012 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
17622945 AATCAAAAGT
*
17622955 TAAGCTCAGATTAGCTAGCACA
1 TAAGCCCAGATTAGCTAGCACA
* * * *
17622977 TAAGCCTAGTTTAGCTGGCATA
1 TAAGCCCAGATTAGCTAGCACA
*
17622999 TAAGCCCAAATTAG
1 TAAGCCCAGATTAG
17623013 TTGAAAAAGT
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (22 bp):
TAAGCCCAGATTAGCTAGCACA
Found at i:17623317 original size:32 final size:32
Alignment explanation
Indices: 17623179--17624000 Score: 249
Period size: 33 Copynumber: 25.5 Consensus size: 32
17623169 TTATCCAAGT
* * *
17623179 TTTAAGCTTAGTTTAGTTGACACCCAATGAAAA
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
* * * *
17623212 TTTAAGCCCAGTCTAGTTGGCACCTAGTGAAAA
1 TTTAAGCCTAGTTTAGTTGGCACC-AATGAAGA
* * * * *
17623245 TTTAAGCTTAGTGTAGTTGACACTCAATCAAAA
1 TTTAAGCCTAGTTTAGTTGGCAC-CAATGAAGA
** * *
17623278 GATAAGCCCAGTTTAGTTGGCACCAATGAAGT
1 TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
* *
17623310 TTTAAGCCTAGTTTA-TCTAGCACCAATGAAAA
1 TTTAAGCCTAGTTTAGT-TGGCACCAATGAAGA
* *
17623342 TTTAAGCCTAGCTTAGTTGGCACTC-A-GCAAAA
1 TTTAAGCCTAGTTTAGTTGGCAC-CAATG-AAGA
* * * * * *
17623374 TTTAAGCCCAATTTAGCTAGCACC--T-AGGT
1 TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
* * ** * * *
17623403 TTTGAGCCGACCTTAGCTAGAACCCAATGAAGA
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
* * ** *
17623436 TTTAAGCCTAGCTTAGCTAACATTCAATGAA-A
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
** * * * *
17623468 TTTAAGCCTAAATTATTTGACTCTCACA-AAAG-
1 TTTAAGCCTAGTTTAGTTGGCAC-CA-ATGAAGA
* *
17623500 TTTAAGCCTAGTTTAGTTGGCACCTAATAAAGT
1 TTTAAGCCTAGTTTAGTTGGCACC-AATGAAGA
* * * * * *
17623533 TTTAAACCCAGTTTAGCTGGCACTTAACGAAGT
1 TTTAAGCCTAGTTTAGTTGGCAC-CAATGAAGA
* * * * *
17623566 TTTAAACCTAATTTAGTTGGCACTTAATAAAGT
1 TTTAAGCCTAGTTTAGTTGGCAC-CAATGAAGA
** **
17623599 TTTAAGGCC-AACTTAACTGGCACCCAATGAA-A
1 TTTAA-GCCTAGTTTAGTTGGCA-CCAATGAAGA
* ** * * *
17623631 TTTAAGCTTAGTTTAACTGACCCTCAATGAAAA
1 TTTAAGCCTAGTTTAGTTGGCAC-CAATGAAGA
* ** ** *
17623664 TTTAAGCCTAGTGTAACTAACACCAATGAAGT
1 TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
* * * * * *
17623696 TTTAGGCCCAGTTTATTTGGCATCAATAAAAA
1 TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
* *** * * *
17623728 TTTAAGCCAAACATAGTTGGCATCTAATAAAAA
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
* * *
17623761 TTTAAGCCTAGTTTAGCTGGCACC--T-AGGT
1 TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
* * * *
17623790 TTTAAGCCCAGCTTAGCTGACACCCAATGAAGA
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
* * * *
17623823 TTTAAACCTAGCTTGGCTGGCACTCAATGAA-A
1 TTTAAGCCTAGTTTAGTTGGCAC-CAATGAAGA
* * ** *
17623855 TTTAAGTCC-AGATTA-TCTGACAGTTAATGAAGT
1 TTTAAG-CCTAGTTTAGT-TGGCA-CCAATGAAGA
* *
17623888 TTTAAGCCTAATTTAGCTGGCACCCAATGAA-A
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
* * * ** *
17623920 TTTAAGCTTAGTTTGGCTAACACCCAATGAAAA
1 TTTAAGCCTAGTTTAGTTGGCA-CCAATGAAGA
* * * * *
17623953 TTTAAACCTAGTATAGTTGGTACCAATAAAAA
1 TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
* *
17623985 CTTAAGCTTAGTTTAG
1 TTTAAGCCTAGTTTAG
17624001 CTAGTATGTT
Statistics
Matches: 590, Mismatches: 163, Indels: 73
0.71 0.20 0.09
Matches are distributed among these distances:
29 38 0.06
30 5 0.01
31 8 0.01
32 256 0.43
33 279 0.47
34 4 0.01
ACGTcount: A:0.34, C:0.19, G:0.16, T:0.31
Consensus pattern (32 bp):
TTTAAGCCTAGTTTAGTTGGCACCAATGAAGA
Found at i:17623378 original size:64 final size:62
Alignment explanation
Indices: 17623202--17623397 Score: 164
Period size: 64 Copynumber: 3.0 Consensus size: 62
17623192 TAGTTGACAC
* * *
17623202 CCAATGAAAATTTAAGCCCAGTCTAGTTGGCACCTAGTGAAAATTTAAGCTTAGTGTAGT-T-GA
1 CCAATGAAAATTTAAGCCCAGT-TAGTTGGCACC-A-AGAAAATTTAAGCCTAGTTTA-TCTAG-
17623265 CA
61 CA
* ** **
17623267 CTCAATCAAAAGATAAGCCCAGTTTAGTTGGCACCAATGAAGTTTTAAGCCTAGTTTATCTAGCA
1 C-CAATGAAAATTTAAGCCCAG-TTAGTTGGCACCAA-GAAAATTTAAGCCTAGTTTATCTAGCA
* * * *
17623332 CCAATGAAAATTTAAGCCTAGCTTAGTTGGCACTC-AGCAAAATTTAAGCCCAATTTAGCTAGCA
1 CCAATGAAAATTTAAGCCCAG-TTAGTTGGCAC-CAAG-AAAATTTAAGCCTAGTTTATCTAGCA
17623396 CC
1 CC
17623398 TAGGTTTTGA
Statistics
Matches: 106, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
63 1 0.01
64 52 0.49
65 23 0.22
66 29 0.27
67 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (62 bp):
CCAATGAAAATTTAAGCCCAGTTAGTTGGCACCAAGAAAATTTAAGCCTAGTTTATCTAGCA
Found at i:17623949 original size:65 final size:65
Alignment explanation
Indices: 17623760--17624003 Score: 183
Period size: 65 Copynumber: 3.8 Consensus size: 65
17623750 TCTAATAAAA
* * ** ** * *
17623760 ATTTAAGCCTAGTTTAGCTGGCA-CCTA-G-GTTTTAAGCCCAGCTTAGCTGACACCCAATGAAG
1 ATTTAAACCTAGTTTAGCTGGCACCCAATGAAATTTAAGCTTAGTTTAGCTAACACCCAATGAAG
* * * * * * * ***
17623822 ATTTAAACCTAGCTTGGCTGGCACTCAATGAAATTTAAG-TCCAGATTATCTGACAGTTAATGAA
1 ATTTAAACCTAGTTTAGCTGGCACCCAATGAAATTTAAGCT-TAGTTTAGCTAACACCCAATGAA
17623886 G
65 G
* * * * *
17623887 TTTTAAGCCTAATTTAGCTGGCACCCAATGAAATTTAAGCTTAGTTTGGCTAACACCCAATGAAA
1 ATTTAAACCTAGTTTAGCTGGCACCCAATGAAATTTAAGCTTAGTTTAGCTAACACCCAATGAAG
* * * * *
17623952 ATTTAAACCTAGTATAGTTGGTA-CCAATAAAAACTTAAGCTTAGTTTAGCTA
1 ATTTAAACCTAGTTTAGCTGGCACCCAAT-GAAATTTAAGCTTAGTTTAGCTA
17624004 GTATGTTAGC
Statistics
Matches: 139, Mismatches: 37, Indels: 9
0.75 0.20 0.05
Matches are distributed among these distances:
62 20 0.14
63 2 0.01
64 6 0.04
65 110 0.79
66 1 0.01
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (65 bp):
ATTTAAACCTAGTTTAGCTGGCACCCAATGAAATTTAAGCTTAGTTTAGCTAACACCCAATGAAG
Found at i:17624187 original size:16 final size:15
Alignment explanation
Indices: 17624168--17624222 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
17624158 CTAAAAAATA
*
17624168 ATAAAAAAGATAAAAG
1 ATAAAAAA-AGAAAAG
17624184 ATAAGAAAAAGAAAAG
1 ATAA-AAAAAGAAAAG
* *
17624200 ATAAAAACAAAAAAAC
1 ATAAAAA-AAGAAAAG
17624216 ATAAAAA
1 ATAAAAA
17624223 TAAAGAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
15 3 0.09
16 27 0.79
17 4 0.12
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (15 bp):
ATAAAAAAAGAAAAG
Found at i:17624193 original size:11 final size:12
Alignment explanation
Indices: 17624172--17624205 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
17624162 AAAATAATAA
17624172 AAAAGATAAAAG
1 AAAAGATAAAAG
*
17624184 ATAAGA-AAAAG
1 AAAAGATAAAAG
17624195 AAAAGATAAAA
1 AAAAGATAAAA
17624206 ACAAAAAAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.76, C:0.00, G:0.15, T:0.09
Consensus pattern (12 bp):
AAAAGATAAAAG
Found at i:17624221 original size:23 final size:22
Alignment explanation
Indices: 17624172--17624240 Score: 63
Period size: 23 Copynumber: 3.1 Consensus size: 22
17624162 AAAATAATAA
* *
17624172 AAAAGATAAAAGATAAGAAAA-AG
1 AAAAGATAAAA-A-AAAAAAACAT
17624195 AAAAGATAAAAACAAAAAAACAT
1 AAAAGATAAAAA-AAAAAAACAT
*
17624218 AAAA-ATAAAGAAAAAAAAC-T
1 AAAAGATAAAAAAAAAAAACAT
17624238 AAA
1 AAA
17624241 CTAAACCAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 4 0.10
21 8 0.20
22 13 0.32
23 16 0.39
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (22 bp):
AAAAGATAAAAAAAAAAAACAT
Found at i:17624231 original size:20 final size:18
Alignment explanation
Indices: 17624161--17624280 Score: 73
Period size: 19 Copynumber: 6.3 Consensus size: 18
17624151 ATAAAAACTA
* *
17624161 AAAAATAATAAAAAAGAT
1 AAAAATAAAAAAAAAAAT
*
17624179 AAAAGATAAGAAAAAGAAAAG
1 AAAA-ATAA-AAAAA-AAAAT
* *
17624200 ATAAAA-ACAAAAAAACAT
1 A-AAAATAAAAAAAAAAAT
17624218 AAAAATAAAGAAAAAAAACT
1 AAAAATAAA-AAAAAAAA-T
* *
17624238 -AAACTAAACCAAAAAAAT
1 AAAAATAAA-AAAAAAAAT
*
17624256 ACAAAACAAAAAAAAAACAT
1 A-AAAATAAAAAAAAAA-AT
17624276 AAAAA
1 AAAAA
17624281 ATTTTTAGGA
Statistics
Matches: 78, Mismatches: 14, Indels: 19
0.70 0.13 0.17
Matches are distributed among these distances:
17 4 0.05
18 11 0.14
19 40 0.51
20 15 0.19
21 5 0.06
22 3 0.04
ACGTcount: A:0.78, C:0.07, G:0.05, T:0.09
Consensus pattern (18 bp):
AAAAATAAAAAAAAAAAT
Found at i:17624696 original size:27 final size:28
Alignment explanation
Indices: 17624657--17624731 Score: 100
Period size: 27 Copynumber: 2.7 Consensus size: 28
17624647 AAATCATTAC
*
17624657 ATAAAAAACAAATAAAAATATAT-AATA
1 ATAAAAAACAAATAAAAATATATAAAAA
*
17624684 ATAAATAAA-AAATATAAATATATAAAAA
1 ATAAA-AAACAAATAAAAATATATAAAAA
17624712 ATATAAAAACAAATAAAAAT
1 ATA-AAAAACAAATAAAAAT
17624732 GTTATACAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 18 0.44
28 12 0.29
29 11 0.27
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (28 bp):
ATAAAAAACAAATAAAAATATATAAAAA
Found at i:17624698 original size:19 final size:18
Alignment explanation
Indices: 17624661--17624730 Score: 79
Period size: 19 Copynumber: 3.8 Consensus size: 18
17624651 CATTACATAA
*
17624661 AAAACAAATAAAAATATAT
1 AAAATAAATAAAAA-ATAT
17624680 AATAATAAATAAAAAATAT
1 AA-AATAAATAAAAAATAT
*
17624699 -AAATATATAAAAAATAT
1 AAAATAAATAAAAAATAT
*
17624716 AAAAACAAATAAAAA
1 -AAAATAAATAAAAA
17624731 TGTTATACAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
17 15 0.34
18 1 0.02
19 17 0.39
20 11 0.25
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (18 bp):
AAAATAAATAAAAAATAT
Found at i:17624708 original size:17 final size:17
Alignment explanation
Indices: 17624666--17624718 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 17
17624656 CATAAAAAAC
17624666 AAATAAAAATATATAATAAT
1 AAATAAAAA-ATAT-A-AAT
17624686 AAATAAAAAATATAAAT
1 AAATAAAAAATATAAAT
*
17624703 ATATAAAAAATATAAA
1 AAATAAAAAATATAAA
17624719 AACAAATAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 18 0.56
18 1 0.03
19 4 0.12
20 9 0.28
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATAAAAAATATAAAT
Found at i:17624727 original size:10 final size:10
Alignment explanation
Indices: 17624660--17624731 Score: 53
Period size: 10 Copynumber: 7.6 Consensus size: 10
17624650 TCATTACATA
*
17624660 AAAAACAAAT
1 AAAAATAAAT
*
17624670 AAAAATATAT
1 AAAAATAAAT
*
17624680 AATAATAAAT
1 AAAAATAAAT
17624690 --AAA-AAAT
1 AAAAATAAAT
* *
17624697 ATAAATATAT
1 AAAAATAAAT
*
17624707 AAAAA-ATAT
1 AAAAATAAAT
*
17624716 AAAAACAAAT
1 AAAAATAAAT
17624726 AAAAAT
1 AAAAAT
17624732 GTTATACAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 8
0.74 0.14 0.12
Matches are distributed among these distances:
7 4 0.08
8 2 0.04
9 12 0.24
10 31 0.63
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:17624769 original size:19 final size:19
Alignment explanation
Indices: 17624664--17624776 Score: 76
Period size: 19 Copynumber: 6.1 Consensus size: 19
17624654 TACATAAAAA
17624664 ACAAATAAAA-ATATATAAT
1 ACAAATAAAATATATAT-AT
* * *
17624683 AATAAATAAAAAATATAAAT
1 -ACAAATAAAATATATATAT
* *
17624703 ATATAA-AAAATATA-A-AA
1 ACA-AATAAAATATATATAT
*
17624720 ACAAATAAAA-ATGT-TAT
1 ACAAATAAAATATATATAT
*
17624737 ACAAATTCAAATATATATAT
1 ACAAA-TAAAATATATATAT
*
17624757 ACAAATAAAATATAAATAT
1 ACAAATAAAATATATATAT
17624776 A
1 A
17624777 TAAAAAATAA
Statistics
Matches: 74, Mismatches: 11, Indels: 17
0.73 0.11 0.17
Matches are distributed among these distances:
16 4 0.05
17 13 0.18
18 5 0.07
19 26 0.35
20 21 0.28
21 5 0.07
ACGTcount: A:0.67, C:0.04, G:0.01, T:0.27
Consensus pattern (19 bp):
ACAAATAAAATATATATAT
Found at i:17628431 original size:22 final size:23
Alignment explanation
Indices: 17628388--17628431 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
17628378 AAACTTTTTT
*
17628388 TGTTTTTAGCTTCTTTTTCTTTA
1 TGTTTTTAGCTTCTTTTGCTTTA
17628411 TGTTTTT-GCTT-TCTTTGCTTT
1 TGTTTTTAGCTTCT-TTTGCTTT
17628432 TTACTGGAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 11 0.58
23 7 0.37
ACGTcount: A:0.05, C:0.14, G:0.11, T:0.70
Consensus pattern (23 bp):
TGTTTTTAGCTTCTTTTGCTTTA
Found at i:17628968 original size:144 final size:143
Alignment explanation
Indices: 17628772--17629037 Score: 383
Period size: 144 Copynumber: 1.9 Consensus size: 143
17628762 TCATTTTTGG
*
17628772 GATTTTAAAATACCAAAAATTATAAAACATTATGAAATTAAGATTTGAAAAGTTTCATGAAAATT
1 GATTTTAAAATACCAAAAATTATAAAACATTATAAAATTAAGATTTGAAAAGTTTCATGAAAATT
*
17628837 CAAGCTC-GAGAAGGCCAAATTACAAAAAACCCCTAT-AAGGGTATTTTGGTAATTTCACCCTTC
66 CAAGCTCGGA-AAGGCCAAATTACAAAAAA-CCCTATAAAGGGTATTTTAGTAATTTCACCCTTC
17628900 TCAGGGTGCTACTAT
129 TCAGGGTGCTACTAT
* * * *
17628915 GATTTTAAATATACTAAAAATTATGAAATATTATAAAATTAAGATTTGAAAAGTTTCATGAAATT
1 GATTTTAAA-ATACCAAAAATTATAAAACATTATAAAATTAAGATTTGAAAAGTTTCATGAAAAT
** * * * *
17628980 TTGATCTCGGAAAGGTCAAATTACAAAATACCCTTTAAAGGGTATTTTAGTAATTTCA
65 TCAAGCTCGGAAAGGCCAAATTACAAAAAACCCTATAAAGGGTATTTTAGTAATTTCA
17629038 TACTTTTTGA
Statistics
Matches: 108, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
143 14 0.13
144 92 0.85
145 2 0.02
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (143 bp):
GATTTTAAAATACCAAAAATTATAAAACATTATAAAATTAAGATTTGAAAAGTTTCATGAAAATT
CAAGCTCGGAAAGGCCAAATTACAAAAAACCCTATAAAGGGTATTTTAGTAATTTCACCCTTCTC
AGGGTGCTACTAT
Found at i:17629059 original size:144 final size:144
Alignment explanation
Indices: 17628772--17629068 Score: 377
Period size: 144 Copynumber: 2.1 Consensus size: 144
17628762 TCATTTTTGG
*
17628772 GATTTTAAA-ATACCAAAAATTATAAAACATTATGAAATTAAGATTTGAAAAGTTTCATGAAAAT
1 GATTTTAAATATACCAAAAATTATAAAACATTATAAAATTAAGATTTGAAAAGTTTCATGAAAAT
* *
17628836 TCAAGCTCGAGAAGGCCAAATTACAAAAAACCCCTATAAGGGTATTTTGGTAATTTCACCCTTCT
66 TCAAGCTCGAGAAGGCCAAATTACAAAAAACCCCTATAAGGGTATTTTAGTAATTTCAACCTTCT
*
17628901 CAGGGTGCTACTAT
131 CAGGGTACTACTAT
* * * *
17628915 GATTTTAAATATACTAAAAATTATGAAATATTATAAAATTAAGATTTGAAAAGTTTCATGAAATT
1 GATTTTAAATATACCAAAAATTATAAAACATTATAAAATTAAGATTTGAAAAGTTTCATGAAAAT
** * * * * *
17628980 TTGATCTCG-GAAAGGTCAAATTACAAAATA-CCCTTTAAAGGGTATTTTAGTAATTTCATACTT
66 TCAAGCTCGAG-AAGGCCAAATTACAAAAAACCCCTAT-AAGGGTATTTTAGTAATTTCA-ACCT
* * *
17629043 TTTGA-GGTACTGCTAT
128 TCTCAGGGTACTACTAT
17629059 GATTTTAAAT
1 GATTTTAAAT
17629069 GTATCTGAAA
Statistics
Matches: 132, Mismatches: 18, Indels: 7
0.84 0.11 0.04
Matches are distributed among these distances:
143 15 0.11
144 112 0.85
145 5 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (144 bp):
GATTTTAAATATACCAAAAATTATAAAACATTATAAAATTAAGATTTGAAAAGTTTCATGAAAAT
TCAAGCTCGAGAAGGCCAAATTACAAAAAACCCCTATAAGGGTATTTTAGTAATTTCAACCTTCT
CAGGGTACTACTAT
Found at i:17630662 original size:19 final size:19
Alignment explanation
Indices: 17630602--17630701 Score: 58
Period size: 19 Copynumber: 5.2 Consensus size: 19
17630592 GTAAATCCTA
* *
17630602 AAACCCTAAATGAAACCCCA
1 AAACCCTAAAT-AAAACCCT
** * * *
17630622 AAACCCTAGGTGAATCCTT
1 AAACCCTAAATAAAACCCT
17630641 AAACCCTAAATAAAACCCT
1 AAACCCTAAATAAAACCCT
* ** *
17630660 AAACCAT-AAGCAAACCTCA
1 AAACCCTAAATAAAACC-CT
*
17630679 AAACCCTAACATGAAACCCT
1 AAACCCTAA-ATAAAACCCT
17630699 AAA
1 AAA
17630702 TTCATTCGAA
Statistics
Matches: 58, Mismatches: 19, Indels: 6
0.70 0.23 0.07
Matches are distributed among these distances:
18 7 0.12
19 31 0.53
20 14 0.24
21 6 0.10
ACGTcount: A:0.48, C:0.31, G:0.06, T:0.15
Consensus pattern (19 bp):
AAACCCTAAATAAAACCCT
Found at i:17630714 original size:18 final size:18
Alignment explanation
Indices: 17630691--17630726 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
17630681 ACCCTAACAT
*
17630691 GAAACCCTAAATTCATTC
1 GAAACCCTAAAATCATTC
*
17630709 GAAACCTTAAAATCATTC
1 GAAACCCTAAAATCATTC
17630727 CAAGATTCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.25, G:0.06, T:0.28
Consensus pattern (18 bp):
GAAACCCTAAAATCATTC
Found at i:17633036 original size:30 final size:29
Alignment explanation
Indices: 17633002--17633069 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
17632992 ATTTAAAATA
17633002 AAATTTTTTGAATTTTCAAAATCTTATAT
1 AAATTTTTTGAATTTTCAAAATCTTATAT
** * ** *
17633031 CAAATTGCTTGAATTTTTAATGTCTTATGT
1 -AAATTTTTTGAATTTTCAAAATCTTATAT
17633061 AAATTTTTT
1 AAATTTTTT
17633070 AAATCAAGAT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.53
Consensus pattern (29 bp):
AAATTTTTTGAATTTTCAAAATCTTATAT
Done.