Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168470.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_7, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 26282861
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 74000 characters in sequence are not A, C, G, or T
File 93 of 133
Found at i:18174103 original size:22 final size:22
Alignment explanation
Indices: 18174078--18174127 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
18174068 ATATTTTGAT
18174078 TTTTTTATTT-ATTAATTT-ATAA
1 TTTTTTATTTGA--AATTTAATAA
*
18174100 TTTTATATTTGAAATTTAATAA
1 TTTTTTATTTGAAATTTAATAA
18174122 TTTTTT
1 TTTTTT
18174128 GTTGTTTTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 5 0.21
22 18 0.75
23 1 0.04
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (22 bp):
TTTTTTATTTGAAATTTAATAA
Found at i:18174447 original size:620 final size:604
Alignment explanation
Indices: 18173234--18174448 Score: 1672
Period size: 619 Copynumber: 2.0 Consensus size: 604
18173224 TGGGTAGTTT
* *
18173234 TTATTTAATTTTTTAATTAATTTTATTAAAATATAAATTTTTAATTTTTAATTTTTATAGATAAA
1 TTATTTAATTTTGTAATTAATTTTATTAAAATATAAATTTTTAATTTTAAATTTTTATAGATAAA
* * * *
18173299 ATTTAGTTAGAGGGATTGAGATTTTATAATTAAAAAAATTAAGAGATTAATAATTTAATATAATA
66 ATTTAGATAAAAGGATTGAGAATTTATAATTAAAAAAATTAAGAGATTAATAATTTAATATAATA
* * *
18173364 TATATAGGGATTTTAGATGAAACATTTTAATAAATTTTTTTATAAGTTAGATGAAAATAATTAAA
131 TATATAGGGATTTAAGATGAAAAATTTTAATAAATTTTTTTATAAGTTAGATGAAAATAATGAAA
*
18173429 ATTAAATATTACATTTTAATTTTGTTATTTATTAATTTATAATTTTATATTTAAAATTTAATAGT
196 ATTAAATATTACATTTTAATTTTGTTATTTATTAATTTATAATTTTATATTTAAAATTTAATAGA
* * *
18173494 TTTTTTGTGGTTTTGATATTTATATTGTTGTCATTTCTTTTACTATTAAATTGATTCGTATTAAT
261 TTTTTTGTGGTTTTGATATTTATATTGTTATCAATTCTTTTACTATTAAATTGAATC-TATTAAT
* * *
18173559 TTATTTTTATTTTTATTTTTGTGTAATTGTTGAATATTCTATTTATTATATAATATATTGAAAGT
325 TTATATTTATTTTTATTTTTGTGTAATTATTGAAGATTCTATTTATTATATAATATATTGAAAGT
* *
18173624 AATTTATGATAAAAAAAACTTTTACATCAATAAGTGTATCAAAAAGATTAAATTACTTAATAAAT
390 AATTTATGAT--AAAAAACTTTTACATCAATAAGTATATCAAAAAGATTAAATTACTTAAGAAAT
* * * * *
18173689 TTAACATTTTACGATCTATTAGTTTTAAGATTAAAAATTAAAAATTACAAAATTTAACATAGATT
453 TTAACATTTTACAATATATTACTTTTAAGATTAAAAAATAAAAATTAAAAAATTTAACATAGATT
*
18173754 CAATTTTAATGATGGAATAAGTAACATTAATATTTCTAAATATAAGTTTATTTTGTTTTTATACA
518 CAATTTTAATGATGGAATAAGTAACATTAATATTTCTAAATATAAATTTATTTTGTTTTTATACA
18173819 AAATAACAAGCATACCACTACG
583 AAATAACAAGCATACCACTACG
18173841 TTATTTAATTTTGTAATTAATTTTATTAAAATATAAATTTTAAAATTTGTAATTTTAAAATTTTT
1 TTATTTAATTTTGTAATTAATTTTATTAAAATATAAA---T----TTT-TAATTTT-AAA-TTTT
* *
18173906 TTTAGATAAAATTTAGATAAAAGGATTTAGAATTTATAATTGAAAAAAATTAAGAGATTAATAAT
56 TATAGATAAAATTTAGATAAAAGGATTGAGAATTTATAATT-AAAAAAATTAAGAGATTAATAA-
18173971 TTAATATGATATATATATATATAGGGATTTAAGATGAAAAATTTTAATAAAATTTTTTTGGTATA
119 TT--TA--ATATA-ATATATATAGGGATTTAAGATGAAAAATTTTAAT-AAA-TTTTTT--TATA
* * * *
18174036 AGTTAGATGAAAAATAATGAAAATTAAATGTTATATTTTGATTTTTTTATTTATTAATTTATAAT
175 AGTTAGATG-AAAATAATGAAAATTAAATATTACATTTTAATTTTGTTATTTATTAATTTATAAT
* * * * *
18174101 TTTATATTTGAAATTTAATA-ATTTTTTGTTGTTTTGGTATTTATGTTGTTATCAATTCTTTTGC
239 TTTATATTTAAAATTTAATAGATTTTTTGTGGTTTTGATATTTATATTGTTATCAATTCTTTTAC
*
18174165 TATTAAATT-AAT-TATT-A-TTA-ATTTATTTTTATTTTTGTGTAATTATTGAAGATTTTATTT
304 TATTAAATTGAATCTATTAATTTATATTTATTTTTATTTTTGTGTAATTATTGAAGATTCTATTT
* **** ** *
18174225 ATTATATAATATATT-AAATGTAATTTCTGAT-AATTTTTTTTACATCAATTGGTATATCAAAAT
369 ATTATATAATATATTGAAA-GTAATTTATGATAAAAAACTTTTACATCAATAAGTATATCAAAAA
* * * * *
18174288 GATTAAGTTATTTAAGGAATTTAGCATTTTATAATATATTACTTTTAAGATTAAAAAATAAAAAT
433 GATTAAATTACTTAAGAAATTTAACATTTTACAATATATTACTTTTAAGATTAAAAAATAAAAAT
* *
18174353 TAAAAAATTTAACGTAGATTTAATTTTTAATGATGGAATAAGTAACATTAATATTTCTAAATATA
498 TAAAAAATTTAACATAGATTCAA-TTTTAATGATGGAATAAGTAACATTAATATTTCTAAATATA
18174418 AATTTATTTTGTTTTTATACAAAATAACAAG
562 AATTTATTTTGTTTTTATACAAAATAACAAG
18174449 TGTGCCATAT
Statistics
Matches: 533, Mismatches: 51, Indels: 35
0.86 0.08 0.06
Matches are distributed among these distances:
607 36 0.07
610 1 0.00
614 3 0.01
615 7 0.01
616 2 0.00
617 39 0.07
618 22 0.04
619 101 0.19
620 71 0.13
621 5 0.01
622 62 0.12
623 8 0.02
624 33 0.06
625 7 0.01
626 6 0.01
627 2 0.00
628 59 0.11
629 69 0.13
ACGTcount: A:0.40, C:0.03, G:0.09, T:0.48
Consensus pattern (604 bp):
TTATTTAATTTTGTAATTAATTTTATTAAAATATAAATTTTTAATTTTAAATTTTTATAGATAAA
ATTTAGATAAAAGGATTGAGAATTTATAATTAAAAAAATTAAGAGATTAATAATTTAATATAATA
TATATAGGGATTTAAGATGAAAAATTTTAATAAATTTTTTTATAAGTTAGATGAAAATAATGAAA
ATTAAATATTACATTTTAATTTTGTTATTTATTAATTTATAATTTTATATTTAAAATTTAATAGA
TTTTTTGTGGTTTTGATATTTATATTGTTATCAATTCTTTTACTATTAAATTGAATCTATTAATT
TATATTTATTTTTATTTTTGTGTAATTATTGAAGATTCTATTTATTATATAATATATTGAAAGTA
ATTTATGATAAAAAACTTTTACATCAATAAGTATATCAAAAAGATTAAATTACTTAAGAAATTTA
ACATTTTACAATATATTACTTTTAAGATTAAAAAATAAAAATTAAAAAATTTAACATAGATTCAA
TTTTAATGATGGAATAAGTAACATTAATATTTCTAAATATAAATTTATTTTGTTTTTATACAAAA
TAACAAGCATACCACTACG
Found at i:18185531 original size:31 final size:31
Alignment explanation
Indices: 18185463--18185524 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
18185453 TTAGGGTTTT
* *
18185463 AAAGA-TTAAGAAGAGAATAGAGGAGAATTGA
1 AAAGACTTAAG-AGAGAACAGAGAAGAATTGA
18185494 AAAGACTTAAGAGAGAACAGAGAAGAATTGA
1 AAAGACTTAAGAGAGAACAGAGAAGAATTGA
18185525 GGAGACTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 23 0.82
32 5 0.18
ACGTcount: A:0.55, C:0.03, G:0.27, T:0.15
Consensus pattern (31 bp):
AAAGACTTAAGAGAGAACAGAGAAGAATTGA
Found at i:18191776 original size:5 final size:5
Alignment explanation
Indices: 18191766--18191797 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
18191756 CCATGACTGC
*
18191766 TTGGG TTGGG TTGGG TTGGG TTGGG TTAGG TT
1 TTGGG TTGGG TTGGG TTGGG TTGGG TTGGG TT
18191798 CTTACCTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.03, C:0.00, G:0.53, T:0.44
Consensus pattern (5 bp):
TTGGG
Found at i:18192731 original size:16 final size:16
Alignment explanation
Indices: 18192712--18192742 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
18192702 ATTGTTTACA
18192712 TATTTTTTAAATAATT
1 TATTTTTTAAATAATT
18192728 TATTTTTTAAATAAT
1 TATTTTTTAAATAAT
18192743 ATTAATATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TATTTTTTAAATAATT
Found at i:18192779 original size:23 final size:24
Alignment explanation
Indices: 18192727--18192781 Score: 62
Period size: 23 Copynumber: 2.4 Consensus size: 24
18192717 TTTAAATAAT
* *
18192727 TTATTT-TTTAAATAATATTAATA
1 TTATTTATTAAAATAATATTAAAA
*
18192750 -TAATTATTAAAAT-ATATTAAAA
1 TTATTTATTAAAATAATATTAAAA
18192772 TTATTTATTA
1 TTATTTATTA
18192782 TTAAAATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 12 0.46
23 14 0.54
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TTATTTATTAAAATAATATTAAAA
Found at i:18192790 original size:9 final size:9
Alignment explanation
Indices: 18192751--18192799 Score: 57
Period size: 9 Copynumber: 5.6 Consensus size: 9
18192741 ATATTAATAT
18192751 AATTATTAA
1 AATTATTAA
18192760 AATATATTAA
1 AAT-TATTAA
18192770 AATTATT--
1 AATTATTAA
*
18192777 TATTATTAA
1 AATTATTAA
18192786 AATTATTAA
1 AATTATTAA
*
18192795 TATTA
1 AATTA
18192800 AAAATAATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
7 6 0.18
9 19 0.56
10 9 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (9 bp):
AATTATTAA
Found at i:18192800 original size:15 final size:15
Alignment explanation
Indices: 18192763--18192843 Score: 65
Period size: 16 Copynumber: 5.0 Consensus size: 15
18192753 TTATTAAAAT
18192763 ATATTAAAATTATTTA
1 ATATTAAAATTA-TTA
*
18192779 TTATTAAAATTATTA
1 ATATTAAAATTATTA
*
18192794 ATATTAAAAATAATTA
1 ATATT-AAAATTATTA
*
18192810 TATTTTAATAATAATATTTA
1 -ATATTAA-AAT--TA-TTA
18192830 ATATTAAAA-TATTA
1 ATATTAAAATTATTA
18192844 TGTTAATATA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
14 3 0.06
15 9 0.17
16 22 0.42
17 7 0.13
18 2 0.04
19 7 0.13
20 3 0.06
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATATTAAAATTATTA
Found at i:18192808 original size:19 final size:20
Alignment explanation
Indices: 18192786--18192859 Score: 65
Period size: 19 Copynumber: 4.0 Consensus size: 20
18192776 TTATTATTAA
18192786 AATTA-TTAATATTAAAAAT
1 AATTATTTAATATTAAAAAT
* *
18192805 AATTA--T-ATTTTAATAAT
1 AATTATTTAATATTAAAAAT
18192822 AA-TATTTAATATT-AAAAT
1 AATTATTTAATATTAAAAAT
18192840 -ATTATGTTAATA-TAAAAAT
1 AATTAT-TTAATATTAAAAAT
18192859 A
1 A
18192860 TTTAAAATAA
Statistics
Matches: 44, Mismatches: 4, Indels: 13
0.72 0.07 0.21
Matches are distributed among these distances:
16 2 0.05
17 12 0.27
18 10 0.23
19 20 0.45
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (20 bp):
AATTATTTAATATTAAAAAT
Found at i:18192869 original size:15 final size:15
Alignment explanation
Indices: 18192793--18192878 Score: 57
Period size: 15 Copynumber: 5.5 Consensus size: 15
18192783 TAAAATTATT
* *
18192793 AATATTAAAAATAAT
1 AATATTTAAAATAAA
* * *
18192808 TATATTT-TAATAAT
1 AATATTTAAAATAAA
*
18192822 AATATTTAATATTAAA
1 AATATTTAA-AATAAA
*
18192838 ATATTATGTTAATATAAA
1 A-A-TAT-TTAAAATAAA
18192856 AATATTTAAAATAAA
1 AATATTTAAAATAAA
*
18192871 ATTATTTA
1 AATATTTA
18192879 CTATTCTTAT
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
14 12 0.22
15 21 0.38
16 8 0.15
17 2 0.04
18 8 0.15
19 4 0.07
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (15 bp):
AATATTTAAAATAAA
Found at i:18192898 original size:15 final size:15
Alignment explanation
Indices: 18192886--18193317 Score: 197
Period size: 15 Copynumber: 29.9 Consensus size: 15
18192876 TTACTATTCT
18192886 TATATTATTTATT-A
1 TATATTATTTATTAA
18192900 -ATA-TA-TTA-TAA
1 TATATTATTTATTAA
18192911 --TATTATTTATTAA
1 TATATTATTTATTAA
*
18192924 TA-A-TAGTTATTAA
1 TATATTATTTATTAA
* *
18192937 TATATTATATTAATAG
1 TATATTAT-TTATTAA
18192953 TATATTATTTATTAATAA
1 TATATTATTTA-T--TAA
*
18192971 TATATTATTTATTCA
1 TATATTATTTATTAA
18192986 TATATTA-TTA-TAA
1 TATATTATTTATTAA
*
18192999 TAT-TTATTAATTAAA
1 TATATTATTTATT-AA
18193014 GTAATATTA-TTATT-A
1 -T-ATATTATTTATTAA
18193029 TAATATTA-TTATT-A
1 T-ATATTATTTATTAA
18193043 -ATA-TA-TTA-TAA
1 TATATTATTTATTAA
18193054 -ATATTATTTATTAA
1 TATATTATTTATTAA
* * *
18193068 TGTATGATTTATGAA
1 TATATTATTTATTAA
18193083 TACAATATTATTTATTAA
1 T---ATATTATTTATTAA
* *
18193101 TAGTAATATATTAGT-A
1 TA-TATTAT-TTATTAA
18193117 TATATTTATTTA-TAA
1 TATA-TTATTTATTAA
18193132 TA-A-TATTTATT-A
1 TATATTATTTATTAA
18193144 TATATTATTTATTAA
1 TATATTATTTATTAA
18193159 TAT-TATATTTTATTAA
1 TATAT-TA-TTTATTAA
18193175 TATA-TA---A-TAA
1 TATATTATTTATTAA
*
18193185 TATATTA-TTAAT-A
1 TATATTATTTATTAA
*
18193198 TATTATTATTTATGAA
1 TA-TATTATTTATTAA
18193214 TATTATAATATTTATT-A
1 TA-TAT--TATTTATTAA
* * *
18193231 TAT-TTTTATTAATAG
1 TATATTAT-TTATTAA
18193246 TATATTATTTATTCATA
1 TATATTATTTATT-A-A
*
18193263 TATATTATTTA-TCA
1 TATATTATTTATTAA
* *
18193277 TATATT-GTAATATAA
1 TATATTATTTAT-TAA
18193292 TATA--ATTTATTAA
1 TATATTATTTATTAA
*
18193305 TATAATATTTATT
1 TATATTATTTATT
18193318 TTTAAGTAAA
Statistics
Matches: 328, Mismatches: 34, Indels: 111
0.69 0.07 0.23
Matches are distributed among these distances:
10 11 0.03
11 18 0.05
12 22 0.07
13 44 0.13
14 54 0.16
15 70 0.21
16 49 0.15
17 25 0.08
18 35 0.11
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:18192908 original size:11 final size:11
Alignment explanation
Indices: 18192894--18193205 Score: 134
Period size: 11 Copynumber: 27.5 Consensus size: 11
18192884 CTTATATTAT
18192894 TTATTAATATA
1 TTATTAATATA
18192905 TTA-TAATATTA
1 TTATTAATA-TA
18192916 TTTATTAATAATA
1 -TTATTAAT-ATA
18192929 GTTATTAATATA
1 -TTATTAATATA
18192941 TTATATTAATAGTA
1 -T-TATTAATA-TA
*
18192955 -TATT-ATTTA
1 TTATTAATATA
*
18192964 TTAATAATATA
1 TTATTAATATA
18192975 TTATTTATTCATATA
1 TTA-TTA---ATATA
18192990 TTATT-ATAATA
1 TTATTAAT-ATA
18193001 TTTATTAAT-TA
1 -TTATTAATATA
* *
18193012 -AAGTAATATTA
1 TTATTAATA-TA
18193023 TTATTATAATATTA
1 TTA-T-TAATA-TA
18193037 TTATTAATATA
1 TTATTAATATA
*
18193048 TTATAAATATTA
1 TTATTAATA-TA
*
18193060 TTTATTAATGTA
1 -TTATTAATATA
*
18193072 TGATT--TATGA
1 TTATTAATAT-A
* *
18193082 ATA-CAATATTA
1 TTATTAATA-TA
18193093 TTTATTAATAGTAA
1 -TTATTAATA-T-A
*
18193107 TATATTAGTATA
1 T-TATTAATATA
* *
18193119 -TATTTATTTA
1 TTATTAATATA
*
18193129 -TAATAATAT-
1 TTATTAATATA
18193138 TTATT-ATATA
1 TTATTAATATA
*
18193148 TTATTTAT-TA
1 TTATTAATATA
* *
18193158 ATATT-ATATT
1 TTATTAATATA
18193168 TTATTAATATA
1 TTATTAATATA
*
18193179 -TAATAATATA
1 TTATTAATATA
18193189 TTATTAATATA
1 TTATTAATATA
18193200 TTATTA
1 TTATTA
18193206 TTTATGAATA
Statistics
Matches: 230, Mismatches: 35, Indels: 72
0.68 0.10 0.21
Matches are distributed among these distances:
9 15 0.07
10 55 0.24
11 61 0.27
12 28 0.12
13 39 0.17
14 24 0.10
15 8 0.03
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TTATTAATATA
Found at i:18192960 original size:44 final size:42
Alignment explanation
Indices: 18192887--18193332 Score: 163
Period size: 44 Copynumber: 10.2 Consensus size: 42
18192877 TACTATTCTT
* *
18192887 ATATTATTTAT-TAATATATT-ATA-ATATTATTTATTAATA
1 ATATTATTAATATATTATATTAATATATATTATTTATTAATA
18192926 ATAGTTATTAATATATTATATTAATAGTATATTATTTATTAATA
1 ATA-TTATTAATATATTATATTAATA-TATATTATTTATTAATA
* * *
18192970 ATA-TATT-ATTTATTCATATATTATTATAATATTTATTAATTAAAGTA
1 ATATTATTAATATA-T--TATATTAATAT-ATA-TTATTTATT-AA-TA
* * * *
18193017 ATATTATT-AT-TATAATATTATTAT-TAATATATTATAAATA
1 ATATTATTAATATATTATATTAATATATATTAT-TTATTAATA
* * *
18193057 TTATTTATTAATGTATGATT-TATGAATACAATATTATTTATTAATA
1 ATA-TTATTAA--TAT-ATTATATTAATA-TATATTATTTATTAATA
* * *
18193103 GTAATATATTAGTATATATT-TATTTATA-ATAATATTTATTATATA
1 AT-AT-TATTA--ATATATTATATTAATATATATTATTTATTA-ATA
* * * * *
18193148 TTATTTATTAATATTATATTTTATTAATATATAATAATATATTATTA
1 ATA-TTATT-A-A-TATATTATATTAATATAT-ATTATTTATTAATA
* *
18193195 ATA-TATT-AT-TATT-TATGAATATTATAATATTTATT-ATA
1 ATATTATTAATATATTATATTAATA-TATATTATTTATTAATA
* * * *
18193233 TTTTTATTAATAGTATATTATTTATTCATATATATTATTTATCATATA
1 ATATTATT-A-A-TATATTA--TATTAATATATATTATTTATTA-ATA
* * *
18193281 TTGTAATATAATATAATT-TATTAATATAATATTTATTT-TTAAGTA
1 ATATTAT-TAATAT-ATTATATTAATAT-ATA-TTATTTATTAA-TA
*
18193326 AAATTAT
1 ATATTAT
18193333 GCTCAAAAGT
Statistics
Matches: 311, Mismatches: 46, Indels: 94
0.69 0.10 0.21
Matches are distributed among these distances:
38 3 0.01
39 21 0.07
40 18 0.06
41 23 0.07
42 16 0.05
43 2 0.01
44 74 0.24
45 41 0.13
46 51 0.16
47 37 0.12
48 23 0.07
49 2 0.01
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (42 bp):
ATATTATTAATATATTATATTAATATATATTATTTATTAATA
Found at i:18192965 original size:18 final size:18
Alignment explanation
Indices: 18192939--18193274 Score: 136
Period size: 18 Copynumber: 19.4 Consensus size: 18
18192929 GTTATTAATA
18192939 TATTATATTAATAGTATAT
1 TATT-TATTAATAGTATAT
*
18192958 TATTTATTAATAATATAT
1 TATTTATTAATAGTATAT
*
18192976 TATTTATTCATATATTATTAT
1 TATTTATT-A-ATAGTA-TAT
18192997 AATATTTATTAATTAAAGTAATAT
1 --TATTTATTAA-T--AGT-ATAT
*
18193021 TA-TTATT-ATAATATTAT
1 TATTTATTAATAGTA-TAT
* *
18193038 TATTAATATATTATA-AATAT
1 TATT--TAT-TAATAGTATAT
18193058 TATTTATTAAT-G--TAT
1 TATTTATTAATAGTATAT
* * **
18193073 GATTTATGAATACAATAT
1 TATTTATTAATAGTATAT
18193091 TATTTATTAATAGTA-A-
1 TATTTATTAATAGTATAT
18193107 TA--TA-T--TAGTATA-
1 TATTTATTAATAGTATAT
* *
18193119 TATTTATTTATA--ATAA
1 TATTTATTAATAGTATAT
18193135 TATTTA-T--TA-TATAT
1 TATTTATTAATAGTATAT
*
18193149 TATTTATTAATATTATA-
1 TATTTATTAATAGTATAT
18193166 T-TTTATTAATA-TATAAT
1 TATTTATTAATAGTAT-AT
* * * *
18193183 AATATATTATTAATATAT
1 TATTTATTAATAGTATAT
* *
18193201 TA-TTATTTAT-GAATAT
1 TATTTATTAATAGTATAT
* *
18193217 TATAATATT--TATTATAT
1 TAT-TTATTAATAGTATAT
18193234 T-TTTATTAATAGTATAT
1 TATTTATTAATAGTATAT
*
18193251 TATTTATTCATA-TATAT
1 TATTTATTAATAGTATAT
18193268 TATTTAT
1 TATTTAT
18193275 CATATATTGT
Statistics
Matches: 247, Mismatches: 29, Indels: 84
0.69 0.08 0.23
Matches are distributed among these distances:
11 5 0.02
12 3 0.01
13 3 0.01
14 13 0.05
15 25 0.10
16 28 0.11
17 46 0.19
18 67 0.27
19 9 0.04
20 16 0.06
21 11 0.04
22 7 0.03
23 8 0.03
24 5 0.02
25 1 0.00
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TATTTATTAATAGTATAT
Found at i:18192989 original size:85 final size:83
Alignment explanation
Indices: 18192886--18193161 Score: 237
Period size: 85 Copynumber: 3.2 Consensus size: 83
18192876 TTACTATTCT
* *
18192886 TATATTATTTATTAATATATTATAATATTATTTATTAA-TAATAGTTATTAATATATTA-TATTA
1 TATATTATTTATTAATATATTATAATAATATTTATTAATTAA-AG-TAAT-AT-TATTATTA-TA
*
18192949 ATAGTA-TATT-ATTTATTAATAA
61 ATAGTATTATTAATATATT-ATAA
* * *
18192971 TATATTATTTATTCATATATTATTATAATATTTATTAATTAAAGTAATATTATTATTATAATATT
1 TATATTATTTATTAATATATTATAATAATATTTATTAATTAAAGTAATATTATTATTATAATAGT
18193036 ATTATTAATATATTATAA
66 ATTATTAATATATTATAA
* *
18193054 -ATATTATTTATTAATGTATGATTTATGAATACA-ATATTATTTATTAATAGTAATA-TATTAGT
1 TATATTATTTATTAA--TAT-A-TTAT-AATA-ATAT-TTATTAATTAA-AGTAATATTATTATT
* *
18193116 AT-ATATTTATT-TATAATAATATTTATTA
58 ATAATA-GTATTAT-TAAT-ATA-TTATAA
18193144 TATATTATTTATTAATAT
1 TATATTATTTATTAATAT
18193162 TATATTTTAT
Statistics
Matches: 163, Mismatches: 11, Indels: 30
0.80 0.05 0.15
Matches are distributed among these distances:
82 25 0.15
83 12 0.07
84 12 0.07
85 38 0.23
86 7 0.04
87 9 0.06
88 28 0.17
89 13 0.08
90 5 0.03
91 14 0.09
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (83 bp):
TATATTATTTATTAATATATTATAATAATATTTATTAATTAAAGTAATATTATTATTATAATAGT
ATTATTAATATATTATAA
Found at i:18193039 original size:47 final size:45
Alignment explanation
Indices: 18192903--18193313 Score: 156
Period size: 47 Copynumber: 9.0 Consensus size: 45
18192893 TTTATTAATA
18192903 TATTATAATA-TTATTTATT-AATAATAGTTATTA--AT-ATATTA-
1 TATTATAATATTTA-TTATTAAATAATA-TTATTATTATAATATTAT
* *
18192944 TATTAATAGTATATTATTTATT-AATAATA-TATTATT-TATTCATATAT
1 TATT-ATAATAT-TTA-TTATTAAATAATATTATTATTATAAT-AT-TAT
18192991 TATTATAATATTTATTAATTAAAGTAATATTATTATTATAATATTAT
1 TATTATAATATTTATT-ATTAAA-TAATATTATTATTATAATATTAT
* *
18193038 TA-T-TAATA--TATTA-TAAATATTATTTATTAATGTATGAT-TTAT
1 TATTATAATATTTATTATTAAATAATA-TTATT-AT-TATAATATTAT
* * * *
18193080 GAATACAATA-TTATTTATTAATAGTAATA-TATTAGTAT-ATATTTATT
1 TATTATAATATTTA-TTATTAA-A-TAATATTATTATTATAATA-TTA-T
* * * * *
18193127 TATAATAATATTTATTA-TATATTAT-TTATTAATATTATATTTTAT
1 TATTATAATATTTATTATTAAATAATATTATTATTA-TA-ATATTAT
*
18193172 TAATATATAATAATATATTATT-AAT-ATATTATTATTTATGAATATTAT
1 T-AT-TATAAT-ATTTATTATTAAATAATATTATTA-TTAT-AATATTAT
*
18193220 AATATTTATTATATTT-TTATT-AATAGTATATTATTTATTCATATATATTATT
1 --TA-TTATAATATTTATTATTAAATA--ATATTA-TTATT-ATA-ATATTA-T
* * *
18193272 TATCAT-ATATTGTAATA-TAATATAAT-TTATTAATATAATATT
1 TATTATAATATT-TATTATTAA-ATAATATTATTATTATAATATT
18193314 TATTTTTAAG
Statistics
Matches: 289, Mismatches: 28, Indels: 102
0.69 0.07 0.24
Matches are distributed among these distances:
40 4 0.01
41 13 0.04
42 18 0.06
43 11 0.04
44 35 0.12
45 27 0.09
46 28 0.10
47 52 0.18
48 46 0.16
49 24 0.08
50 16 0.06
51 14 0.05
52 1 0.00
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (45 bp):
TATTATAATATTTATTATTAAATAATATTATTATTATAATATTAT
Found at i:18193239 original size:8 final size:9
Alignment explanation
Indices: 18193117--18193239 Score: 60
Period size: 10 Copynumber: 13.3 Consensus size: 9
18193107 TATATTAGTA
18193117 TATATTTAT
1 TATATTTAT
*
18193126 T-TA-TAAT
1 TATATTTAT
*
18193133 AATATTTAT
1 TATATTTAT
18193142 TATATATTAT
1 TATAT-TTAT
18193152 T-TATTAATAT
1 TATATT--TAT
18193162 TATATTTTAT
1 TATA-TTTAT
*
18193172 TAATATATAAT
1 T-ATAT-TTAT
*
18193183 AATATATTAT
1 TATAT-TTAT
*
18193193 TA-ATATAT
1 TATATTTAT
18193201 TATTATTTAT
1 TA-TATTTAT
*
18193211 GA-ATATTAT
1 TATAT-TTAT
*
18193220 AATATTTAT
1 TATATTTAT
18193229 TATATTT-T
1 TATATTTAT
18193237 TAT
1 TAT
18193240 TAATAGTATA
Statistics
Matches: 88, Mismatches: 13, Indels: 27
0.69 0.10 0.21
Matches are distributed among these distances:
7 3 0.03
8 16 0.18
9 28 0.32
10 31 0.35
11 8 0.09
12 2 0.02
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.59
Consensus pattern (9 bp):
TATATTTAT
Found at i:18193254 original size:20 final size:19
Alignment explanation
Indices: 18193109--18193272 Score: 73
Period size: 20 Copynumber: 7.9 Consensus size: 19
18193099 AATAGTAATA
* *
18193109 TATTAGTATATATTTATTTA
1 TATTAATATATA-TTATTTT
* * *
18193129 TAATAATATTTATTATATAT
1 TATTAATATATATTAT-TTT
*
18193149 TATTTAT-TAATATTATATTT
1 TATTAATAT-ATATTAT-TTT
* *
18193169 TATTAATATATAATAATATAT
1 TATTAATATAT-ATTAT-TTT
18193190 TATTAATATATTATTATTTAT
1 TATTAATATA-TATTATTT-T
*
18193211 GAATATTATAATATTTATTATATTTT
1 ---TA-T-TAATATATA-T-TATTTT
18193237 TATTAATAGTATATTA--TT
1 TATTAATA-TATATTATTTT
*
18193255 TATTCATATATATTATTT
1 TATTAATATATATTATTT
18193273 ATCATATATT
Statistics
Matches: 111, Mismatches: 17, Indels: 33
0.69 0.11 0.20
Matches are distributed among these distances:
17 7 0.06
18 9 0.08
19 6 0.05
20 35 0.32
21 29 0.26
22 5 0.05
23 2 0.02
24 2 0.02
25 3 0.03
26 8 0.07
27 5 0.05
ACGTcount: A:0.40, C:0.01, G:0.02, T:0.58
Consensus pattern (19 bp):
TATTAATATATATTATTTT
Found at i:18193267 original size:78 final size:75
Alignment explanation
Indices: 18192905--18193317 Score: 218
Period size: 76 Copynumber: 5.4 Consensus size: 75
18192895 TATTAATATA
* * * * * *
18192905 TTATAATATTATTTATTA-ATAATAGTTATT-A-A-TATATTATATTAATAGTATATTATTTATT
1 TTATAATAATATATATTATATATTATTTATTAATAGTATATTAT-TTATTAATATA-TA-TTATT
18192966 AATA-ATATATTAT
63 AATATATAT-TTAT
* *
18192979 TTAT--TCATATATTATTATAATATTTATTAATTAA-AGTAATATTA-TTATT-ATA-ATATTAT
1 TTATAATAATATA-TATTAT-ATA-TTATTTATTAATAGT-ATATTATTTATTAATATATATTAT
*
18193038 T-AT-TA-ATATA-
62 TAATATATATTTAT
* * * * * **
18193048 TTATAAATATTATTTATTAATGTATGATTTATGAATACAATATTATTTATTAATAGTA-ATATAT
1 TTAT-AATAATATATATT-ATATATTATTTATTAATAGTATATTATTTATTAATA-TATAT-TAT
*
18193112 TAGTATATATTTAT
62 TAATATATATTTAT
* *
18193126 TTATAATAATATTTATTATATATTATTTATTAATATTATATTTTATTAATATATAATAATATATT
1 TTATAATAATATATATTATATATTATTTATTAATAGTATA--TTATT--TAT-TAAT-ATATATT
18193191 ATTAATATAT-TATTAT
60 ATTAATATATAT-TTAT
* *
18193207 TTATGAATATTATAATATTTATTATATT-TTTATTAATAGTATATTATTTATTCATATATATTAT
1 TTAT-AATAATAT-ATA-TTA-TATATTATTTATTAATAGTATATTATTTATTAATATATATTAT
*
18193271 TTATCATATATTGTA-
62 TAAT-ATATATT-TAT
* * *
18193286 ATATAAT-ATAATTTATTAATATAATATTTATT
1 TTATAATAAT-ATATATT-ATATATTATTTATT
18193318 TTTAAGTAAA
Statistics
Matches: 263, Mismatches: 36, Indels: 77
0.70 0.10 0.20
Matches are distributed among these distances:
69 4 0.02
70 16 0.06
71 14 0.05
72 16 0.06
73 12 0.05
74 11 0.04
75 5 0.02
76 35 0.13
77 32 0.12
78 27 0.10
79 17 0.06
80 10 0.04
81 24 0.09
82 15 0.06
83 2 0.01
84 17 0.06
85 6 0.02
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (75 bp):
TTATAATAATATATATTATATATTATTTATTAATAGTATATTATTTATTAATATATATTATTAAT
ATATATTTAT
Found at i:18193322 original size:18 final size:18
Alignment explanation
Indices: 18192887--18193312 Score: 91
Period size: 18 Copynumber: 23.2 Consensus size: 18
18192877 TACTATTCTT
*
18192887 ATATTATTTATTAATATA
1 ATATAATTTATTAATATA
* *
18192905 TTATAATATTATTTAT-TA
1 ATATAAT-TTATTAATATA
*
18192923 ATA-ATAGTTATTAATAT-
1 ATATA-ATTTATTAATATA
18192940 AT-T-A--TATTAATAGT-
1 ATATAATTTATTAATA-TA
*
18192954 ATATTATTTATTAATA-A
1 ATATAATTTATTAATATA
*
18192971 TATATTATTTATTCATATATTA
1 -ATATAATTTATT-A-ATA-TA
*
18192993 TTATAATATTTATTAAT-TA
1 ATAT-A-ATTTATTAATATA
*
18193012 A-AGTAATATTATTATTATA
1 ATA-TAAT-TTATTAATATA
*
18193031 ATATTA-TTATTAATATA
1 ATATAATTTATTAATATA
* *
18193048 TTATAAATATTATTTAT-TA
1 ATAT-AAT-TTATTAATATA
* * *
18193067 ATGTATGATTTATGAATACA
1 A--TATAATTTATTAATATA
*
18193087 ATATTATTTATTAATAGTA
1 ATATAATTTATTAATA-TA
*
18193106 ATATATTAGTATATATTTATTTATA
1 ATATA--A-T-T-TA-TTA-ATATA
18193131 ATA-ATATTTATT-ATAT-
1 ATATA-ATTTATTAATATA
18193147 AT-T-ATTTATTAATAT-
1 ATATAATTTATTAATATA
*
18193162 -TATATTTTATTAATAT-
1 ATATAATTTATTAATATA
18193178 ATAATAATATATTATTAATATA
1 AT-AT-A-AT-TTATTAATATA
* * *
18193200 TTATTATTTATGAATAT-
1 ATATAATTTATTAATATA
*
18193217 -TATAA--TATT--TATT
1 ATATAATTTATTAATATA
*
18193230 ATAT-TTTTATTAATAGT-
1 ATATAATTTATTAATA-TA
*
18193247 ATATTATTTATTCATATATA
1 ATATAATTTATT-A-ATATA
* *
18193267 TTATTTATCATATATTGTAATATA
1 --A--TATAATTTA-T-TAATATA
18193291 ATATAATTTATTAATATA
1 ATATAATTTATTAATATA
18193309 ATAT
1 ATAT
18193313 TTATTTTTAA
Statistics
Matches: 307, Mismatches: 39, Indels: 124
0.65 0.08 0.26
Matches are distributed among these distances:
12 3 0.01
13 8 0.03
14 17 0.06
15 11 0.04
16 18 0.06
17 35 0.11
18 83 0.27
19 37 0.12
20 28 0.09
21 22 0.07
22 7 0.02
23 10 0.03
24 15 0.05
25 10 0.03
26 3 0.01
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (18 bp):
ATATAATTTATTAATATA
Found at i:18193474 original size:22 final size:21
Alignment explanation
Indices: 18193423--18193474 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
18193413 TTTTTAAAAA
* *
18193423 AATTATTTTTCATTGATTAAT
1 AATTTTTTTTCATTGACTAAT
* *
18193444 AAGTCTTTTTTCATTTACTAATT
1 AA-TTTTTTTTCATTGACTAA-T
18193467 AATTTTTT
1 AATTTTTT
18193475 ATCAAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
21 2 0.08
22 19 0.79
23 3 0.12
ACGTcount: A:0.29, C:0.08, G:0.04, T:0.60
Consensus pattern (21 bp):
AATTTTTTTTCATTGACTAAT
Found at i:18194102 original size:16 final size:16
Alignment explanation
Indices: 18194068--18194139 Score: 51
Period size: 16 Copynumber: 4.4 Consensus size: 16
18194058 AAATTAATAG
*
18194068 TATTTATGTACTT-TAT
1 TATTTATGTAATTAT-T
18194084 TATTTATGTAATTATT
1 TATTTATGTAATTATT
*
18194100 TATTTTAAT-TAATTACT
1 TA-TTT-ATGTAATTATT
* *
18194117 TAATTATG-AATATGTT
1 TATTTATGTAAT-TATT
18194133 TATTTAT
1 TATTTAT
18194140 TATAATCAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
15 5 0.11
16 25 0.56
17 13 0.29
18 2 0.04
ACGTcount: A:0.32, C:0.03, G:0.06, T:0.60
Consensus pattern (16 bp):
TATTTATGTAATTATT
Found at i:18194179 original size:23 final size:23
Alignment explanation
Indices: 18194131--18194179 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
18194121 TATGAATATG
***
18194131 TTTATTTATTATAATCAATTTTA
1 TTTATTTATTATAATCAATAAAA
18194154 TTTATTATATTA-AATCAATAAAA
1 TTTATT-TATTATAATCAATAAAA
18194177 TTT
1 TTT
18194180 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TTTATTTATTATAATCAATAAAA
Found at i:18197212 original size:29 final size:29
Alignment explanation
Indices: 18197144--18197228 Score: 75
Period size: 29 Copynumber: 2.9 Consensus size: 29
18197134 CATAAGGATT
* * *
18197144 AGCTTAGCAAAAATCTTTCATAAAGACTC
1 AGCTTAGCTAAAAGCCTTCATAAAGACTC
*
18197173 AGC-TCGACTAAAAGCCTTCATACAAG-CTC
1 AGCTTAG-CTAAAAGCCTTCATA-AAGACTC
**
18197202 AGCTTAGCTAAATTTCCTTCATAAAGA
1 AGCTTAGCTAAA-AGCCTTCATAAAGA
18197229 ATTAGTTAAG
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
28 2 0.05
29 29 0.66
30 13 0.30
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.27
Consensus pattern (29 bp):
AGCTTAGCTAAAAGCCTTCATAAAGACTC
Found at i:18198948 original size:7 final size:7
Alignment explanation
Indices: 18198896--18198949 Score: 58
Period size: 7 Copynumber: 7.6 Consensus size: 7
18198886 TATATAAAAG
18198896 TAAA-AA
1 TAAATAA
*
18198902 TATATAA
1 TAAATAA
18198909 TGAATATAA
1 T-AA-ATAA
18198918 T-AATAGA
1 TAAATA-A
18198925 TAAATAA
1 TAAATAA
18198932 TAAATAA
1 TAAATAA
18198939 TAAATAA
1 TAAATAA
18198946 TAAA
1 TAAA
18198950 AGCTTGGCCC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
6 6 0.15
7 25 0.61
8 5 0.12
9 5 0.12
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (7 bp):
TAAATAA
Found at i:18202898 original size:14 final size:13
Alignment explanation
Indices: 18202875--18202915 Score: 64
Period size: 14 Copynumber: 3.0 Consensus size: 13
18202865 GGTTAATGTG
18202875 CTTTCATTCTTAA
1 CTTTCATTCTTAA
18202888 CTTTGCATTCTTAA
1 CTTT-CATTCTTAA
18202902 CTTTACATTCTTAA
1 CTTT-CATTCTTAA
18202916 TCATACATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 4 0.15
14 22 0.85
ACGTcount: A:0.24, C:0.22, G:0.02, T:0.51
Consensus pattern (13 bp):
CTTTCATTCTTAA
Found at i:18208358 original size:21 final size:20
Alignment explanation
Indices: 18208312--18208359 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
18208302 TGGCATTGAA
* *
18208312 ATTAATTATTGTATGATAAG
1 ATTAATTATTGTATAAAAAG
*
18208332 ATTAATTATTGTAGTAAAAAT
1 ATTAATTATTGTA-TAAAAAG
18208353 ATTAATT
1 ATTAATT
18208360 TTTATAGCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (20 bp):
ATTAATTATTGTATAAAAAG
Found at i:18209317 original size:19 final size:19
Alignment explanation
Indices: 18209273--18209319 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
18209263 ATTTGATATA
18209273 AAATAATTTTTAAATTAAT
1 AAATAATTTTTAAATTAAT
* *
18209292 TATTAATTTTATAAATT-AT
1 AAATAATTTT-TAAATTAAT
18209311 AAATAATTT
1 AAATAATTT
18209320 AAAATTTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 17 0.74
20 6 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATAATTTTTAAATTAAT
Found at i:18214777 original size:298 final size:300
Alignment explanation
Indices: 18214218--18214802 Score: 1005
Period size: 298 Copynumber: 2.0 Consensus size: 300
18214208 AAGCTGCTGC
*
18214218 ATCTGTACTAAAGTAGGAATTTATGTCATTATTAGATAGCCCTAGGTTTAGAAGCATCTAACTTC
1 ATCTGTACTAAAGTAGGAATTTATGTCATTATTAGATAGCCCTAGGTTTAGAAGCATCCAACTTC
*
18214283 CAATCTTTCAGGAAGAAAACGGCTTGACATGGTATTTCAAAATATATTCTATCCAGCAACAGTAA
66 CAATCATTCAGGAAGAAAACGGCTTGACATGGTATTTCAAAATATATTCTATCCAGCAACAGTAA
* * * **
18214348 TAGGATATCCGGATATGTATGACATCTGTTTTTGGGCCATTACATGAAATTTATATTAAATTGTT
131 TAGGATATCCGAATACGTATGACACCTGTTTAGGGGCCATTACATGAAATTTATATTAAATTGTT
*
18214413 GTACTTTGATTTTTTAGCGTGAGGGTATCTTTGTTCGACATTTATCTGTACCAACTCGGAATGTT
196 GTACTTAGATTTTTTAGCGTGAGGGTATCTTTGTTCGACATTTATCTGTACCAACTCGGAATGTT
*
18214478 AGATTCCCTCCTCTTTAAGAGGGAGAAATTTATGTCATTT
261 AGATTCCCACCTCTTTAAGAGGGAGAAATTTATGTCATTT
*
18214518 ATCTGTACTAAAGTAGGAA-TT-TGTCATTATTAGATAGCCCTAGGTTTATAAGCATCCAACTTC
1 ATCTGTACTAAAGTAGGAATTTATGTCATTATTAGATAGCCCTAGGTTTAGAAGCATCCAACTTC
* * *
18214581 CAATCATTCAGGAAGAAAATGGCTTGACATGGTATTTCAAAATATATTCTATCCAGTAATAGTAA
66 CAATCATTCAGGAAGAAAACGGCTTGACATGGTATTTCAAAATATATTCTATCCAGCAACAGTAA
18214646 TAGGATATCCGAATACGTATGACACCTGTTTAGGGGCCATTACATGAAATTTATATTAAATTGTT
131 TAGGATATCCGAATACGTATGACACCTGTTTAGGGGCCATTACATGAAATTTATATTAAATTGTT
*
18214711 TTACTTAGATTTTTTAGCGTGAGGGTATCTTTGTTCGACATTTATCTGTACCAAC-CTGGAATGT
196 GTACTTAGATTTTTTAGCGTGAGGGTATCTTTGTTCGACATTTATCTGTACCAACTC-GGAATGT
*
18214775 TAGATTCCCACTTCTTTAAGAGGGAGAA
260 TAGATTCCCACCTCTTTAAGAGGGAGAA
18214803 CGTTCCAAAC
Statistics
Matches: 269, Mismatches: 15, Indels: 4
0.93 0.05 0.01
Matches are distributed among these distances:
297 1 0.00
298 247 0.92
299 2 0.01
300 19 0.07
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (300 bp):
ATCTGTACTAAAGTAGGAATTTATGTCATTATTAGATAGCCCTAGGTTTAGAAGCATCCAACTTC
CAATCATTCAGGAAGAAAACGGCTTGACATGGTATTTCAAAATATATTCTATCCAGCAACAGTAA
TAGGATATCCGAATACGTATGACACCTGTTTAGGGGCCATTACATGAAATTTATATTAAATTGTT
GTACTTAGATTTTTTAGCGTGAGGGTATCTTTGTTCGACATTTATCTGTACCAACTCGGAATGTT
AGATTCCCACCTCTTTAAGAGGGAGAAATTTATGTCATTT
Found at i:18215038 original size:24 final size:24
Alignment explanation
Indices: 18215010--18215057 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
18215000 CCAGAGTAAG
*
18215010 AGAAACTGGGAAAGGAATTAGTCT
1 AGAAACTGGGAAAGGAACTAGTCT
*
18215034 AGAAAGTGGGAAAGGAACTAGTCT
1 AGAAACTGGGAAAGGAACTAGTCT
18215058 TGGTTCTTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.42, C:0.08, G:0.31, T:0.19
Consensus pattern (24 bp):
AGAAACTGGGAAAGGAACTAGTCT
Found at i:18215794 original size:258 final size:257
Alignment explanation
Indices: 18215329--18215904 Score: 929
Period size: 258 Copynumber: 2.2 Consensus size: 257
18215319 GGTTAGGTGT
* * * *
18215329 TTGAGATGGTGTTGGTACATCTATGAGATGGTAGGATGGTGGTTGGGAATACGTCTATGAGATCA
1 TTGAGATGGTGTTGGTACATCTACGAGATGGTAGGATGGTGATTGAGAATATGTCTATGAGATCA
*
18215394 CCTCTTCATTCAAACAAGGTTGCTTCCAAGCCCATATTTTTATAATTGTTGGGGGTAAATTACAT
66 CCTCTTCATTCAAACAAGGTTGCTTACAAGCCCATATTTTTATAATTGTTGGGGGTAAATTACAT
* * *
18215459 GGTCGCCCTTTGGGGTTAGGTGTATCGATAGAAACTTCTCTCCAAATTTCTTTCAAGTATGTAAA
131 GGTCGCCCTTTGGGGTTAGGTGTATCAATAGAAACTTCTCTCCAAATTTCTATCAAGTATGCAAA
* * *
18215524 ATGGGTGTTTAACTAAAATTTCAATTAGTTTACATAAGCATGCATTAGATGGAAAGGATTATG
196 ATAGGCGTTTAACT-AAATTTCAATTAGTTTACATAAGCATGCATGAGATGGAAAGGATTATG
*
18215587 TTGAGATGGTGTTGGTACGTCTACGAGATGGTAGGATGGTGATTGAGAATATGTCTATGAGATCA
1 TTGAGATGGTGTTGGTACATCTACGAGATGGTAGGATGGTGATTGAGAATATGTCTATGAGATCA
* *
18215652 CCTCTTCATTCAAACGAGGTTGTTTACAAGCCCATATTTTTATAATTGTTGGGGGTAAATTACAT
66 CCTCTTCATTCAAACAAGGTTGCTTACAAGCCCATATTTTTATAATTGTTGGGGGTAAATTACAT
* *
18215717 GGTCGCCCTTTGGGGTTTGGTGTATCAATAGAAACTTCTCTCCAAATTTCTATCAAGTATGCCAA
131 GGTCGCCCTTTGGGGTTAGGTGTATCAATAGAAACTTCTCTCCAAATTTCTATCAAGTATGCAAA
* * * * *
18215782 GTAGGCGTTTAACTAAATTTCAATTAGTTTTCATGAGCATGCGTGAGGTGGAAAGGATTATG
196 ATAGGCGTTTAACTAAATTTCAATTAGTTTACATAAGCATGCATGAGATGGAAAGGATTATG
*
18215844 TTGAGATGGTGTTGGTACATCTACGAGATGGTAGGATGGCGGA-TGAGAATATGTCTATGAG
1 TTGAGATGGTGTTGGTACATCTACGAGATGGTAGGATGG-TGATTGAGAATATGTCTATGAG
18215905 TTTCTGATTG
Statistics
Matches: 294, Mismatches: 23, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
257 99 0.34
258 195 0.66
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.34
Consensus pattern (257 bp):
TTGAGATGGTGTTGGTACATCTACGAGATGGTAGGATGGTGATTGAGAATATGTCTATGAGATCA
CCTCTTCATTCAAACAAGGTTGCTTACAAGCCCATATTTTTATAATTGTTGGGGGTAAATTACAT
GGTCGCCCTTTGGGGTTAGGTGTATCAATAGAAACTTCTCTCCAAATTTCTATCAAGTATGCAAA
ATAGGCGTTTAACTAAATTTCAATTAGTTTACATAAGCATGCATGAGATGGAAAGGATTATG
Found at i:18217704 original size:30 final size:27
Alignment explanation
Indices: 18217660--18217739 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 27
18217650 TTGGGAAATG
*
18217660 GAAAA-AAGGGGAAAAAAGAAAAAAGAA
1 GAAAAGAAGGAGAAAAAAGAAAAAA-AA
* *
18217687 GAAAGGGGAAGGAG-AAAAAGAAAGAAAA
1 GAAA--AGAAGGAGAAAAAAGAAAAAAAA
18217715 GAAAAGAAGGAAGAAAAAAAGAAAA
1 GAAAAGAAGG-AG-AAAAAAGAAAA
18217740 GTAAAAAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
26 5 0.12
27 6 0.14
28 6 0.14
29 20 0.48
30 5 0.12
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (27 bp):
GAAAAGAAGGAGAAAAAAGAAAAAAAA
Found at i:18217720 original size:29 final size:29
Alignment explanation
Indices: 18217671--18217739 Score: 79
Period size: 29 Copynumber: 2.4 Consensus size: 29
18217661 AAAAAAGGGG
*
18217671 AAAAAAGAAAAAAGAAGAAAG-GGGAAGGA
1 AAAAAAGAAAAAAGAAGAAAGAAGGAA-GA
* *
18217700 GAAAAAGAAAGAA-AAGAAAAGAAGGAAGA
1 AAAAAAGAAAAAAGAAG-AAAGAAGGAAGA
18217729 AAAAAAGAAAA
1 AAAAAAGAAAA
18217740 GTAAAAAAGA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
28 3 0.09
29 26 0.79
30 4 0.12
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (29 bp):
AAAAAAGAAAAAAGAAGAAAGAAGGAAGA
Found at i:18217756 original size:25 final size:26
Alignment explanation
Indices: 18217694--18217745 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
18217684 GAAGAAAGGG
18217694 GAAGG-AGAAAAAGAAAGAAAAGAAAA
1 GAAGGAAG-AAAAGAAAGAAAAGAAAA
18217720 GAAGGAAGAAAA-AAAGAAAAGTAAAA
1 GAAGGAAGAAAAGAAAGAAAAG-AAAA
18217746 AAGAGGGAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 9 0.38
26 13 0.54
27 2 0.08
ACGTcount: A:0.73, C:0.00, G:0.25, T:0.02
Consensus pattern (26 bp):
GAAGGAAGAAAAGAAAGAAAAGAAAA
Found at i:18218590 original size:36 final size:37
Alignment explanation
Indices: 18218526--18218599 Score: 132
Period size: 36 Copynumber: 2.0 Consensus size: 37
18218516 GTTTATAAAT
*
18218526 TAGGCCTCTAATACTTGAACTTGTTAATAAGGTTTCA
1 TAGGCCCCTAATACTTGAACTTGTTAATAAGGTTTCA
18218563 TAGGCCCCTAATACTT-AACTTGTTAATAAGGTTTCA
1 TAGGCCCCTAATACTTGAACTTGTTAATAAGGTTTCA
18218599 T
1 T
18218600 CTGAACTTAC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 21 0.58
37 15 0.42
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.38
Consensus pattern (37 bp):
TAGGCCCCTAATACTTGAACTTGTTAATAAGGTTTCA
Found at i:18221281 original size:10 final size:10
Alignment explanation
Indices: 18221266--18221309 Score: 63
Period size: 10 Copynumber: 4.5 Consensus size: 10
18221256 ACATTAAAAG
18221266 AAAAATTTTA
1 AAAAATTTTA
18221276 AAAAA-TTTA
1 AAAAATTTTA
*
18221285 CAAAATTTTA
1 AAAAATTTTA
*
18221295 AAAAATTTGA
1 AAAAATTTTA
18221305 AAAAA
1 AAAAA
18221310 AATTTAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 8 0.27
10 22 0.73
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (10 bp):
AAAAATTTTA
Found at i:18221284 original size:9 final size:9
Alignment explanation
Indices: 18221266--18221309 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
18221256 ACATTAAAAG
*
18221266 AAAAATTTT
1 AAAAAATTT
18221275 AAAAAATTT
1 AAAAAATTT
*
18221284 ACAAAATTTT
1 A-AAAAATTT
18221294 AAAAAATTT
1 AAAAAATTT
18221303 GAAAAAA
1 -AAAAAA
18221310 AATTTAAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
9 16 0.53
10 14 0.47
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAAATTT
Found at i:18221308 original size:19 final size:19
Alignment explanation
Indices: 18221265--18221308 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
18221255 AACATTAAAA
18221265 GAAAAATTTTAAAAAATTT
1 GAAAAATTTTAAAAAATTT
18221284 -ACAAAATTTTAAAAAATTT
1 GA-AAAATTTTAAAAAATTT
18221303 GAAAAA
1 GAAAAA
18221309 AAATTTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
18 1 0.04
19 21 0.91
20 1 0.04
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (19 bp):
GAAAAATTTTAAAAAATTT
Found at i:18221360 original size:36 final size:35
Alignment explanation
Indices: 18221289--18221382 Score: 111
Period size: 35 Copynumber: 2.6 Consensus size: 35
18221279 AATTTACAAA
18221289 ATTTTAAAAAATTTGAAAAAAAATTTAAATATGAAAT
1 ATTTTAAAAAA-TT-AAAAAAAATTTAAATATGAAAT
* *
18221326 ATTTTAAAAAATTATAAAGAA-TTAAAGTATTGAAAT
1 ATTTTAAAAAATTAAAAAAAATTTAAA-TA-TGAAAT
*
18221362 A-TCTAAAAAATTAAAAAAAAT
1 ATTTTAAAAAATTAAAAAAAAT
18221383 ATTTTTAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
34 5 0.10
35 24 0.49
36 9 0.18
37 11 0.22
ACGTcount: A:0.61, C:0.01, G:0.05, T:0.33
Consensus pattern (35 bp):
ATTTTAAAAAATTAAAAAAAATTTAAATATGAAAT
Found at i:18224468 original size:3 final size:3
Alignment explanation
Indices: 18224460--18224494 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
18224450 AGGCATACAA
18224460 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
18224495 ATGAACACAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:18225751 original size:17 final size:17
Alignment explanation
Indices: 18225731--18225765 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18225721 ATAAAAATAT
18225731 ATAAAAAAAAAAACAAA
1 ATAAAAAAAAAAACAAA
* *
18225748 ATAAAAAATAAAATAAA
1 ATAAAAAAAAAAACAAA
18225765 A
1 A
18225766 CTACAATTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.86, C:0.03, G:0.00, T:0.11
Consensus pattern (17 bp):
ATAAAAAAAAAAACAAA
Found at i:18228123 original size:3 final size:3
Alignment explanation
Indices: 18228117--18228161 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
18228107 AATAACAATA
18228117 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
18228162 GTAGTGTTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:18230752 original size:21 final size:21
Alignment explanation
Indices: 18230728--18230768 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
18230718 TTGAGAACAA
18230728 AACAATACTTTTAATATTTTT
1 AACAATACTTTTAATATTTTT
** *
18230749 AACAATGTTTTTGATATTTT
1 AACAATACTTTTAATATTTT
18230769 CAATAATTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (21 bp):
AACAATACTTTTAATATTTTT
Found at i:18231342 original size:64 final size:65
Alignment explanation
Indices: 18231269--18231395 Score: 204
Period size: 65 Copynumber: 2.0 Consensus size: 65
18231259 GCCTTAAAAC
*
18231269 CTAATTAATTTAAAATAAAAA-TAATAACATTAGATTAAAA-TTTATTTATTAATTATATATAAA
1 CTAATTAATTTAAAATAAAAAGTAATAACATTA-ATAAAAATTTTATTTATTAATTATATATAAA
18231332 G
65 G
* *
18231333 CTAATTAATTTAAAATAAAAAGTTATAATATTAATAAAAATTTTATTTATTAATTATATATAA
1 CTAATTAATTTAAAATAAAAAGTAATAACATTAATAAAAATTTTATTTATTAATTATATATAA
18231396 TTTATATATA
Statistics
Matches: 58, Mismatches: 3, Indels: 3
0.91 0.05 0.05
Matches are distributed among these distances:
64 27 0.47
65 31 0.53
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (65 bp):
CTAATTAATTTAAAATAAAAAGTAATAACATTAATAAAAATTTTATTTATTAATTATATATAAAG
Found at i:18231772 original size:53 final size:54
Alignment explanation
Indices: 18231699--18231804 Score: 169
Period size: 53 Copynumber: 2.0 Consensus size: 54
18231689 GTAAGCATAA
*
18231699 TTTTAAATCCCAAGAACCATATGTGAATATTAAAACACTAAATTTAA-TAATAT
1 TTTTAAATCCCAAAAACCATATGTGAATATTAAAACACTAAATTTAATTAATAT
* * *
18231752 TTTTAAATCCTAAAAACCATATGTGATTATTAAAACACTAACTTTAATTAATA
1 TTTTAAATCCCAAAAACCATATGTGAATATTAAAACACTAAATTTAATTAATA
18231805 GATGATAAGC
Statistics
Matches: 48, Mismatches: 4, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
53 43 0.90
54 5 0.10
ACGTcount: A:0.46, C:0.13, G:0.05, T:0.36
Consensus pattern (54 bp):
TTTTAAATCCCAAAAACCATATGTGAATATTAAAACACTAAATTTAATTAATAT
Found at i:18240959 original size:2 final size:2
Alignment explanation
Indices: 18240954--18241046 Score: 73
Period size: 2 Copynumber: 47.0 Consensus size: 2
18240944 TGTGTGTGTG
* * * *
18240954 TA TA TA TA TA TA TA TA TA -A TG TA TG TA TA TA TG TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
18240995 TA TG TA TA TA TA TG TA TA TA -A GTT TA TA TA TG TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA
*
18241037 TA TA CA TA TA
1 TA TA TA TA TA
18241047 AAAGAGAGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 6
0.74 0.19 0.06
Matches are distributed among these distances:
1 2 0.03
2 68 0.97
ACGTcount: A:0.41, C:0.01, G:0.10, T:0.48
Consensus pattern (2 bp):
TA
Found at i:18242019 original size:14 final size:14
Alignment explanation
Indices: 18242002--18242030 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
18241992 AAATTTTGAT
18242002 ATAAATATTTTTAG
1 ATAAATATTTTTAG
18242016 ATAAATATTTTTAG
1 ATAAATATTTTTAG
18242030 A
1 A
18242031 AAAAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
ATAAATATTTTTAG
Found at i:18242036 original size:15 final size:14
Alignment explanation
Indices: 18242004--18242039 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
18241994 ATTTTGATAT
*
18242004 AAATATTTTTAGAT
1 AAATATTTTTAGAA
18242018 AAATATTTTTAGAAA
1 AAATATTTTTAG-AA
18242033 AAATATT
1 AAATATT
18242040 AATAGATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (14 bp):
AAATATTTTTAGAA
Found at i:18243023 original size:2 final size:2
Alignment explanation
Indices: 18243016--18243045 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
18243006 ACTTCCAGCA
18243016 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18243046 TTAACCCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:18243745 original size:81 final size:81
Alignment explanation
Indices: 18243648--18243808 Score: 268
Period size: 81 Copynumber: 2.0 Consensus size: 81
18243638 TTTTTGTTAA
* *
18243648 TTTGATACTTAAAATAATAAAATTTACGATTAAGCACATGAATTATCATTTCCTCATATACTTTC
1 TTTGATACTTAAAATAATAAAATTTACAAATAAGCACATGAATTATCATTTCCTCATATACTTTC
18243713 ATACTTTCAATTAGTG
66 ATACTTTCAATTAGTG
* * *
18243729 TTTGATACTTAAAATAATAAAATTTGCAAATAAGTACATGAATTATCATTTCCTTATATACTTTC
1 TTTGATACTTAAAATAATAAAATTTACAAATAAGCACATGAATTATCATTTCCTCATATACTTTC
*
18243794 ATACTTTTAATTAGT
66 ATACTTTCAATTAGT
18243809 ACCGTTAATC
Statistics
Matches: 74, Mismatches: 6, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.38, C:0.13, G:0.07, T:0.42
Consensus pattern (81 bp):
TTTGATACTTAAAATAATAAAATTTACAAATAAGCACATGAATTATCATTTCCTCATATACTTTC
ATACTTTCAATTAGTG
Found at i:18243951 original size:14 final size:15
Alignment explanation
Indices: 18243932--18243964 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
18243922 AAATTTCAAA
18243932 AAAATAT-AAAAATT
1 AAAATATCAAAAATT
*
18243946 AAAATATCTAAAATT
1 AAAATATCAAAAATT
18243961 AAAA
1 AAAA
18243965 AATTTTATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (15 bp):
AAAATATCAAAAATT
Found at i:18244130 original size:16 final size:16
Alignment explanation
Indices: 18244111--18244161 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
18244101 ATTATCTCAT
18244111 ATTTGAATTATTTTAA
1 ATTTGAATTATTTTAA
* *
18244127 ATTTGAATAATTTAAAA
1 ATTTGAATTATTT-TAA
18244144 ATTTGAATTA-TTTAA
1 ATTTGAATTATTTTAA
18244159 ATT
1 ATT
18244162 AAATATTCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 5 0.17
16 14 0.47
17 11 0.37
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (16 bp):
ATTTGAATTATTTTAA
Found at i:18244147 original size:17 final size:17
Alignment explanation
Indices: 18244111--18244159 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
18244101 ATTATCTCAT
*
18244111 ATTTGAATTATTT-TAA
1 ATTTGAATTATTTAAAA
*
18244127 ATTTGAATAATTTAAAA
1 ATTTGAATTATTTAAAA
18244144 ATTTGAATTATTTAAA
1 ATTTGAATTATTTAAA
18244160 TTAAATATTC
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
16 12 0.41
17 17 0.59
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (17 bp):
ATTTGAATTATTTAAAA
Found at i:18244173 original size:22 final size:22
Alignment explanation
Indices: 18244138--18244183 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
18244128 TTTGAATAAT
*
18244138 TTAAAAATTTGAATTATTTAAA
1 TTAAAAATTCGAATTATTTAAA
* * *
18244160 TTAAATATTCGAATTGTTTGAA
1 TTAAAAATTCGAATTATTTAAA
18244182 TT
1 TT
18244184 TGGATAATCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.41, C:0.02, G:0.09, T:0.48
Consensus pattern (22 bp):
TTAAAAATTCGAATTATTTAAA
Found at i:18245066 original size:28 final size:29
Alignment explanation
Indices: 18245010--18245075 Score: 82
Period size: 28 Copynumber: 2.3 Consensus size: 29
18245000 TTGAAGTAAA
18245010 AATTTATTTAGATACAAATAAAAGATAAT
1 AATTTATTTAGATACAAATAAAAGATAAT
* **
18245039 AGTTTATTT-GAATAC-AATAAACTATAAT
1 AATTTATTTAG-ATACAAATAAAAGATAAT
18245067 AATTTATTT
1 AATTTATTT
18245076 TAAAAAGTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 20 0.62
29 12 0.38
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.41
Consensus pattern (29 bp):
AATTTATTTAGATACAAATAAAAGATAAT
Found at i:18247141 original size:10 final size:11
Alignment explanation
Indices: 18247113--18247150 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
18247103 CACAATAAAG
*
18247113 ATAATTAAGAA
1 ATAAATAAGAA
18247124 ATAAATAA-AA
1 ATAAATAAGAA
*
18247134 ATATATAAGAA
1 ATAAATAAGAA
18247145 ATAAAT
1 ATAAAT
18247151 CATTAAATAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.26
Consensus pattern (11 bp):
ATAAATAAGAA
Found at i:18247488 original size:31 final size:32
Alignment explanation
Indices: 18247417--18247495 Score: 99
Period size: 32 Copynumber: 2.5 Consensus size: 32
18247407 GTCTGGGTTC
* * *
18247417 AAAAATGAAATTACTTAGATTGAGTCGAAATT
1 AAAAATGAAATGACTTAGATTGAGTCCAAAGT
* *
18247449 TAAAATGAAATGATTTAGATTGAG-CCAAAGT
1 AAAAATGAAATGACTTAGATTGAGTCCAAAGT
18247480 AAAAATG-AATGACTTA
1 AAAAATGAAATGACTTA
18247496 AATTAAACAC
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
30 8 0.20
31 11 0.28
32 21 0.52
ACGTcount: A:0.48, C:0.06, G:0.16, T:0.29
Consensus pattern (32 bp):
AAAAATGAAATGACTTAGATTGAGTCCAAAGT
Found at i:18248597 original size:13 final size:14
Alignment explanation
Indices: 18248566--18248596 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
18248556 GAAAACTAGC
*
18248566 AAAATTATAAAATA
1 AAAATAATAAAATA
18248580 AAAATAATAAAATA
1 AAAATAATAAAATA
18248594 AAA
1 AAA
18248597 TGGAATTTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAATAAAATA
Found at i:18248970 original size:10 final size:10
Alignment explanation
Indices: 18248942--18249002 Score: 77
Period size: 10 Copynumber: 5.9 Consensus size: 10
18248932 TATTCTTCCC
18248942 AAACCCAATAA
1 AAACCCAA-AA
18248953 AAACCCAAAA
1 AAACCCAAAA
*
18248963 AAATCCAAAA
1 AAACCCAAAA
18248973 AAACCCAAAA
1 AAACCCAAAA
**
18248983 AGGCCCAAAA
1 AAACCCAAAA
18248993 AAACCTCAAA
1 AAACC-CAAA
18249003 CCTTCCCAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
10 31 0.72
11 12 0.28
ACGTcount: A:0.64, C:0.28, G:0.03, T:0.05
Consensus pattern (10 bp):
AAACCCAAAA
Found at i:18249450 original size:3 final size:3
Alignment explanation
Indices: 18249442--18249599 Score: 108
Period size: 3 Copynumber: 52.7 Consensus size: 3
18249432 AAAAAATGAA
*
18249442 AAT AAT AAT AGT AAT AAT AAT -AT AAT AAT AAT -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * * *
18249488 AAT AAT AGT AGT AGT AGT AAT AAT ACT AAT AAT AAT AAT GAT GAT ACT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
18249536 AAT AAT AGT -AT ACCAT AAT ATT ATAT TAT AAT ATAT ACT -AT AAT AAT
1 AAT AAT AAT AAT A--AT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT AAT
* * *
18249583 AAC AAA AAT ACT AAT AA
1 AAT AAT AAT AAT AAT AA
18249600 CAAAAGAAAT
Statistics
Matches: 124, Mismatches: 23, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
2 6 0.05
3 111 0.90
4 4 0.03
5 3 0.02
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:18249555 original size:13 final size:12
Alignment explanation
Indices: 18249531--18249580 Score: 55
Period size: 13 Copynumber: 3.9 Consensus size: 12
18249521 AATAATGATG
18249531 ATACTAATAATAGT
1 ATACT-ATAATA-T
*
18249545 ATACCATAATATT
1 ATACTATAATA-T
*
18249558 ATATTATAATAT
1 ATACTATAATAT
18249570 ATACTATAATA
1 ATACTATAATA
18249581 ATAACAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
12 11 0.35
13 16 0.52
14 4 0.13
ACGTcount: A:0.50, C:0.08, G:0.02, T:0.40
Consensus pattern (12 bp):
ATACTATAATAT
Found at i:18249978 original size:120 final size:120
Alignment explanation
Indices: 18249744--18250077 Score: 370
Period size: 120 Copynumber: 2.8 Consensus size: 120
18249734 TAAATCTGAA
* * * * * * **
18249744 AAATGATCTGGACTGAGTCAAGATTAGGTGACTGGGACGAAACCACGAGTC-AAAATGAAGCGAC
1 AAATGATATGGACTGAGCCAAGATCAGATGACTGGGATGAAACCACGGGTCAAAAATGAAATGAC
* *
18249808 CAGGATTGAGTCGAA-GTAAAAAATAAATGACCGAGACAAAACCACAAATCATAA-
66 CAGGATCGAGTC-AAGGTAAAAAATAAATGACCAAGACAAAACCACAAATCATAAT
* *
18249862 AGAATGATATGGATTGAGCCAAGATCAAATGACTGGGATGAAACCACGGGTCAAAAATGAAATGA
1 A-AATGATATGGACTGAGCCAAGATCAGATGACTGGGATGAAACCACGGGTCAAAAATGAAATGA
* * * * **
18249927 CCATGACCGAGTTAAGGTAAAAAATAAATGACTAAGACAAAACCATGAATCATAAT
65 CCAGGATCGAGTCAAGGTAAAAAATAAATGACCAAGACAAAACCACAAATCATAAT
* * * * **
18249983 ATATGATTTGGACTGAGCCAAGATCAGATGACCGAGATGAAACCATAGGTCAAAAAT-AAAGTGA
1 AAATGATATGGACTGAGCCAAGATCAGATGACTGGGATGAAACCACGGGTCAAAAATGAAA-TGA
* * *
18250047 CCAGGATCGAGTCGAGATTAAAAATAAATGA
65 CCAGGATCGAGTCAAGGTAAAAAATAAATGA
18250078 TTGGAGTAAA
Statistics
Matches: 179, Mismatches: 32, Indels: 8
0.82 0.15 0.04
Matches are distributed among these distances:
118 1 0.01
119 47 0.26
120 130 0.73
121 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.22, T:0.18
Consensus pattern (120 bp):
AAATGATATGGACTGAGCCAAGATCAGATGACTGGGATGAAACCACGGGTCAAAAATGAAATGAC
CAGGATCGAGTCAAGGTAAAAAATAAATGACCAAGACAAAACCACAAATCATAAT
Found at i:18250197 original size:109 final size:109
Alignment explanation
Indices: 18249993--18250190 Score: 252
Period size: 109 Copynumber: 1.8 Consensus size: 109
18249983 ATATGATTTG
* * ** * ** * *
18249993 GACTGAGCCAAGATCAGATGACCGAGATGAAACCATAGGTCAAAAATAAAGTGACCAGGATCGAG
1 GACTGAGCCAAGATCAGATAACCAAGACAAAACCACAGGTCAAAAATAAAGCAACCAGGACCAAG
* *
18250058 TCGAGATTAAAAATAAATGATTGGAGTAAAACCATGATAATCTA
66 TAGAGATCAAAAATAAATGATTGGAGTAAAACCATGATAATCTA
* * * *
18250102 GACTGAGCCAAGATTAGGTAACCAAGACAAAACCACGGGTCAAAAATGAAGCAACCAGGACCAAG
1 GACTGAGCCAAGATCAGATAACCAAGACAAAACCACAGGTCAAAAATAAAGCAACCAGGACCAAG
*
18250167 TAGAGGTCAAAAATAAATGATTGG
66 TAGAGATCAAAAATAAATGATTGG
18250191 GATAAAATCA
Statistics
Matches: 73, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
109 73 1.00
ACGTcount: A:0.44, C:0.16, G:0.23, T:0.17
Consensus pattern (109 bp):
GACTGAGCCAAGATCAGATAACCAAGACAAAACCACAGGTCAAAAATAAAGCAACCAGGACCAAG
TAGAGATCAAAAATAAATGATTGGAGTAAAACCATGATAATCTA
Found at i:18260569 original size:42 final size:42
Alignment explanation
Indices: 18260511--18260595 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
18260501 AAAAAAAAAC
* *
18260511 AAATGAGTAATTAAGCAAGTATAAACAATGAAAAAGAATAAA
1 AAATGAATAATAAAGCAAGTATAAACAATGAAAAAGAATAAA
* * * *
18260553 AAATGAATAATAAAGCACGTATTAGCAATGAAAAGGAATAAA
1 AAATGAATAATAAAGCAAGTATAAACAATGAAAAAGAATAAA
18260595 A
1 A
18260596 TAATTTCAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.60, C:0.06, G:0.15, T:0.19
Consensus pattern (42 bp):
AAATGAATAATAAAGCAAGTATAAACAATGAAAAAGAATAAA
Found at i:18261531 original size:13 final size:14
Alignment explanation
Indices: 18261500--18261530 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
18261490 GAAAACCAGC
*
18261500 AAAATTATAAAATA
1 AAAATAATAAAATA
18261514 AAAATAATAAAATA
1 AAAATAATAAAATA
18261528 AAA
1 AAA
18261531 TGAAATCTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAATAATAAAATA
Found at i:18262446 original size:3 final size:3
Alignment explanation
Indices: 18262440--18262553 Score: 81
Period size: 3 Copynumber: 37.7 Consensus size: 3
18262430 AATGAAAAAA
* *
18262440 AAT AAT AGT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AAT AAT GAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
18262487 ACT AAT AAT AGT -AT ACCAT AAT ATT ATAT TAT AAT ATAT ACT -AT AAT
1 AAT AAT AAT AAT AAT A--AT AAT AAT A-AT AAT AAT A-AT AAT AAT AAT
* * *
18262534 AAT AAC AAA AAT ACT AAT AA
1 AAT AAT AAT AAT AAT AAT AA
18262554 CAAAATAAAT
Statistics
Matches: 85, Mismatches: 19, Indels: 14
0.72 0.16 0.12
Matches are distributed among these distances:
2 4 0.05
3 74 0.87
4 4 0.05
5 3 0.04
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:18262535 original size:15 final size:13
Alignment explanation
Indices: 18262448--18262538 Score: 85
Period size: 13 Copynumber: 6.7 Consensus size: 13
18262438 AAAATAATAG
18262448 TAATAATAATAATA
1 TAATAATAAT-ATA
18262462 TAATAATAATA-A
1 TAATAATAATATA
18262474 TAATAATAATGATA
1 TAATAATAAT-ATA
*
18262488 CTAATAATAGTATA
1 -TAATAATAATATA
** *
18262502 CCATAATATTATA
1 TAATAATAATATA
*
18262515 TTATAATATATACTA
1 TAATAATA-ATA-TA
18262530 TAATAATAA
1 TAATAATAA
18262539 CAAAAATACT
Statistics
Matches: 64, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
12 11 0.17
13 18 0.28
14 17 0.27
15 18 0.28
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.37
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:18262664 original size:33 final size:34
Alignment explanation
Indices: 18262620--18262707 Score: 110
Period size: 33 Copynumber: 2.6 Consensus size: 34
18262610 GTTAAGATTG
* *
18262620 AAAAATAATATGGCTTGGACTTGGCTAAAGTG-A
1 AAAAATGATATGGCTTGGACTTAGCTAAAGTGCA
*
18262653 AAAAATGATATGACTTAGG-CTTAGCTAAAGTGCA
1 AAAAATGATATGGCTT-GGACTTAGCTAAAGTGCA
*
18262687 AAAAATGATATTGCTT-GACTT
1 AAAAATGATATGGCTTGGACTT
18262708 TAGTCGAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
32 1 0.02
33 29 0.62
34 17 0.36
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (34 bp):
AAAAATGATATGGCTTGGACTTAGCTAAAGTGCA
Found at i:18262873 original size:64 final size:64
Alignment explanation
Indices: 18262754--18262874 Score: 145
Period size: 64 Copynumber: 1.9 Consensus size: 64
18262744 TAGAGTTGAT
* *
18262754 AATGAAAGTGACCGGATCGAACCAAGGTAAAAAATGAAGGTGACTAGATTAAGCCAATATCAAG
1 AATGAAAGTGACCAGATCGAACCAAGGTAAAAAATGAAGGTGACAAGATTAAGCCAATATCAAG
* * * ** * *
18262818 AATGAAAGTGACTAGATTGAACCAAGTTTGAAAATGAATGTGA-AAGAATTGAGCCAA
1 AATGAAAGTGACCAGATCGAACCAAGGTAAAAAATGAAGGTGACAAG-ATTAAGCCAA
18262875 GTTCAAAATT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
63 2 0.04
64 45 0.96
ACGTcount: A:0.45, C:0.12, G:0.23, T:0.20
Consensus pattern (64 bp):
AATGAAAGTGACCAGATCGAACCAAGGTAAAAAATGAAGGTGACAAGATTAAGCCAATATCAAG
Found at i:18262947 original size:32 final size:32
Alignment explanation
Indices: 18262754--18263004 Score: 110
Period size: 32 Copynumber: 7.8 Consensus size: 32
18262744 TAGAGTTGAT
* * * *
18262754 AATGAAAGTGACCGGATCGAACCAAGGTAAAA
1 AATGAAGGTGACTGGATTGAGCCAAGGTAAAA
* * ** * *
18262786 AATGAAGGTGACTAGATTAAGCCAATATCAAG
1 AATGAAGGTGACTGGATTGAGCCAAGGTAAAA
* * * * **
18262818 AATGAAAGTGACTAGATTGAACCAAGTTTGAA
1 AATGAAGGTGACTGGATTGAGCCAAGGTAAAA
* ** * * *
18262850 AATGAATGTGAAAGAATTGAGCCAAGTTCAAA
1 AATGAAGGTGACTGGATTGAGCCAAGGTAAAA
* * * * * *
18262882 ATTGAGGGTGA-TCGAATTAAACCAAGGTTAAA
1 AATGAAGGTGACT-GGATTGAGCCAAGGTAAAA
* *
18262914 AATGAATGTGATTGGATTGAGCCAAGGTAAAA
1 AATGAAGGTGACTGGATTGAGCCAAGGTAAAA
* ** * * *
18262946 AATAAGAGGTGACCAGACTAAGCCAAAGTAAAAA
1 AATGA-AGGTGACTGGATTGAGCCAAGGT-AAAA
* *
18262980 AATGAAGATGA-TCAGATTGAGCCAA
1 AATGAAGGTGACT-GGATTGAGCCAA
18263005 AGTTGAAATA
Statistics
Matches: 160, Mismatches: 54, Indels: 9
0.72 0.24 0.04
Matches are distributed among these distances:
32 120 0.75
33 32 0.20
34 8 0.05
ACGTcount: A:0.45, C:0.11, G:0.24, T:0.20
Consensus pattern (32 bp):
AATGAAGGTGACTGGATTGAGCCAAGGTAAAA
Found at i:18263003 original size:33 final size:32
Alignment explanation
Indices: 18262911--18263007 Score: 90
Period size: 33 Copynumber: 3.0 Consensus size: 32
18262901 AACCAAGGTT
** *
18262911 AAAAATGAATG-TGATTGGATTGAGCCAAGGTA
1 AAAAATGAA-GATGATCAGATTGAGCCAAAGTA
* * *
18262943 AAAAAT-AAGAGGTGACCAGACTAAGCCAAAGTAA
1 AAAAATGAAGA--TGATCAGATTGAGCCAAAGT-A
18262977 AAAAATGAAGATGATCAGATTGAGCCAAAGT
1 AAAAATGAAGATGATCAGATTGAGCCAAAGT
18263008 TGAAATAAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
30 1 0.02
31 2 0.04
32 6 0.12
33 31 0.61
34 7 0.14
35 4 0.08
ACGTcount: A:0.47, C:0.10, G:0.24, T:0.19
Consensus pattern (32 bp):
AAAAATGAAGATGATCAGATTGAGCCAAAGTA
Found at i:18263090 original size:32 final size:32
Alignment explanation
Indices: 18263054--18263143 Score: 90
Period size: 32 Copynumber: 2.8 Consensus size: 32
18263044 TGAAGACAAT
* **
18263054 TGGACCGAACCAAGTTTGAAAATGAAGGTTAC
1 TGGACCGAACCAAGGTAAAAAATGAAGGTTAC
* *
18263086 TGGACTGAACCAAGGTAAAAAATGAAGGTGAC
1 TGGACCGAACCAAGGTAAAAAATGAAGGTTAC
** ** *
18263118 CAGATTGAACCAAGGTAAAAAGTGAA
1 TGGACCGAACCAAGGTAAAAAATGAA
18263144 TGCGATTGAT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 49 1.00
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.18
Consensus pattern (32 bp):
TGGACCGAACCAAGGTAAAAAATGAAGGTTAC
Found at i:18263225 original size:32 final size:33
Alignment explanation
Indices: 18263184--18263258 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 33
18263174 AGGTGATCAG
18263184 ACTGAGCTAAAG-TTGAAAATGAAAGTGACTGA
1 ACTGAGCTAAAGTTTGAAAATGAAAGTGACTGA
* *
18263216 ACTGAGCT-AAGTTTGAAAATGGAAGTGACTGG
1 ACTGAGCTAAAGTTTGAAAATGAAAGTGACTGA
18263248 ACTGAG-TAAAG
1 ACTGAGCTAAAG
18263259 ATCGAAATAG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
31 4 0.10
32 35 0.90
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (33 bp):
ACTGAGCTAAAGTTTGAAAATGAAAGTGACTGA
Found at i:18263479 original size:32 final size:31
Alignment explanation
Indices: 18263417--18263501 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 31
18263407 GTGATCAGAA
* *
18263417 TAAGCC-AAGTCAAAATGAAGATGACTAAAC
1 TAAGCCAAAGTCAAAATGAAGATAACCAAAC
* * *
18263447 TAGGCCTAAGTCAAAGATGAAGGTAACCAAAC
1 TAAGCCAAAGTCAAA-ATGAAGATAACCAAAC
18263479 TAAGCCAAAGT-AGAAATGAAGAT
1 TAAGCCAAAGTCA-AAATGAAGAT
18263502 GATTTGATTG
Statistics
Matches: 45, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
30 5 0.11
31 16 0.36
32 24 0.53
ACGTcount: A:0.48, C:0.15, G:0.20, T:0.16
Consensus pattern (31 bp):
TAAGCCAAAGTCAAAATGAAGATAACCAAAC
Found at i:18263556 original size:32 final size:31
Alignment explanation
Indices: 18263484--18263561 Score: 77
Period size: 32 Copynumber: 2.5 Consensus size: 31
18263474 CAAACTAAGC
* ** *
18263484 CAAAGTAGAAATGAAGATGATTTGATTGAGT
1 CAAAGTCGAAATGAAGATGATCGGACTGAGT
*
18263515 C-AAGATCGAATATGAAGGTGATCGGACTGAGT
1 CAAAG-TCGAA-ATGAAGATGATCGGACTGAGT
18263547 CAAAGTCGAAGATGA
1 CAAAGTCGAA-ATGA
18263562 CTAGGTTTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
30 3 0.08
31 5 0.13
32 27 0.71
33 3 0.08
ACGTcount: A:0.40, C:0.09, G:0.28, T:0.23
Consensus pattern (31 bp):
CAAAGTCGAAATGAAGATGATCGGACTGAGT
Found at i:18263985 original size:34 final size:33
Alignment explanation
Indices: 18263942--18264015 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 33
18263932 AATGAATGCC
*
18263942 ATGCTAATAATGCTAATGTCTTC-TAAATGATGCAA
1 ATGC-AATAATGCAAAT-TC-TCATAAATGATGCAA
*
18263977 ATGCAATAATTCAAATTCTCATTAAATGATGCAA
1 ATGCAATAATGCAAATTCTCA-TAAATGATGCAA
18264011 ATGCA
1 ATGCA
18264016 TGTGCTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
32 2 0.06
33 2 0.06
34 27 0.77
35 4 0.11
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (33 bp):
ATGCAATAATGCAAATTCTCATAAATGATGCAA
Found at i:18267198 original size:21 final size:22
Alignment explanation
Indices: 18267156--18267198 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
18267146 TTATTTAAAT
* **
18267156 AAAAGACTCATTTTTTTGAAAA
1 AAAAAACTCATTTTTTACAAAA
18267178 AAAAAACT-ATTTTTTACAAAA
1 AAAAAACTCATTTTTTACAAAA
18267199 TTTAAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.51, C:0.09, G:0.05, T:0.35
Consensus pattern (22 bp):
AAAAAACTCATTTTTTACAAAA
Found at i:18269659 original size:24 final size:23
Alignment explanation
Indices: 18269632--18269676 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
18269622 TGAATTCTTG
18269632 TCCTCACCCATACTTTTATTTCTA
1 TCCTCACCCATACTTTT-TTTCTA
*
18269656 TCCTCACCTATACTTTTTTTC
1 TCCTCACCCATACTTTTTTTC
18269677 AACTCTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.18, C:0.33, G:0.00, T:0.49
Consensus pattern (23 bp):
TCCTCACCCATACTTTTTTTCTA
Found at i:18269905 original size:29 final size:29
Alignment explanation
Indices: 18269863--18269921 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
18269853 AAATTGGGTT
*
18269863 TTTAAGCTTAGACCCAAATTGGATCCTAA
1 TTTAAGCTTAGACCCAAAATGGATCCTAA
*
18269892 TTTAAGCTTAGACCTAAAATGGATCCTAA
1 TTTAAGCTTAGACCCAAAATGGATCCTAA
18269921 T
1 T
18269922 AATATAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.32
Consensus pattern (29 bp):
TTTAAGCTTAGACCCAAAATGGATCCTAA
Found at i:18271933 original size:42 final size:43
Alignment explanation
Indices: 18271883--18271968 Score: 115
Period size: 42 Copynumber: 2.0 Consensus size: 43
18271873 TTAAATATGT
*
18271883 CATATTTTTCTTCT-ATTCTTTATTACAA-AA-TCAAAATACAAA
1 CATATTTTTCTT-TAATTATTTATTACAAGAACT-AAAATACAAA
*
18271925 CATATTTTTGTTTAATTATTTATTACAAGAACTAAAATACAAA
1 CATATTTTTCTTTAATTATTTATTACAAGAACTAAAATACAAA
18271968 C
1 C
18271969 TATAGTGTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
41 1 0.03
42 24 0.62
43 13 0.33
44 1 0.03
ACGTcount: A:0.42, C:0.14, G:0.02, T:0.42
Consensus pattern (43 bp):
CATATTTTTCTTTAATTATTTATTACAAGAACTAAAATACAAA
Found at i:18275704 original size:143 final size:144
Alignment explanation
Indices: 18275456--18275809 Score: 445
Period size: 143 Copynumber: 2.5 Consensus size: 144
18275446 GATTTTAAAA
* * *
18275456 CACCAAAAATCATGAAATATTAT-AGAATTTAGATCTGAAAAGTTTCATAAAAATTTGAGCTCGG
1 CACCAAAAATCATGAAATATTATGA-AATTAAGATCTGAAAAGTTTCATGAAAATCTGAGCTCGG
* * *
18275520 GAAGGTGAAATTACAAAAATACCTATATAGGAGATTTTGGTAATTTCACACTTTTCGGGGTACTA
65 GAAGCTGAAATTACAAAAATACCTATAAAGGAGATTTTGGTAATTTCACACTTTTC-GAGTACTA
18275585 CTGTGATTTCAAATG-
129 CTGTGATTTCAAATGT
* * * * *
18275600 CACCAAAAATTATGAAAAATTATGAAATTGAGATCT-AGATA-TTTCATGAAAATCTGAGCTTGG
1 CACCAAAAATCATGAAATATTATGAAATTAAGATCTGA-AAAGTTTCATGAAAATCTGAGCTCGG
* *
18275663 GAATGCT-AAATTAC-AAAATATCCTTATAAAGG-TATTTTGGTAATTTCACATTTTTCGAGTAC
65 GAA-GCTGAAATTACAAAAATA-CC-TATAAAGGAGATTTTGGTAATTTCACACTTTTCGAGTAC
**
18275725 TGTTGTGATTTCAAATGT
127 TACTGTGATTTCAAATGT
* *
18275743 C-CTAAAAATCATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATCTAAGCTCGGG
1 CACCAAAAATCATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATCTGAGCTCGGG
18275807 AAG
66 AAG
18275810 GGCCAAATTA
Statistics
Matches: 181, Mismatches: 21, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
142 59 0.33
143 79 0.44
144 42 0.23
145 1 0.01
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (144 bp):
CACCAAAAATCATGAAATATTATGAAATTAAGATCTGAAAAGTTTCATGAAAATCTGAGCTCGGG
AAGCTGAAATTACAAAAATACCTATAAAGGAGATTTTGGTAATTTCACACTTTTCGAGTACTACT
GTGATTTCAAATGT
Found at i:18279730 original size:21 final size:22
Alignment explanation
Indices: 18279697--18279770 Score: 91
Period size: 21 Copynumber: 3.5 Consensus size: 22
18279687 ATGCATTCAT
18279697 ATCATGTCATTCATGTTTAACC
1 ATCATGTCATTCATGTTTAACC
** * *
18279719 ATCATG-CATTCATCATTCA-T
1 ATCATGTCATTCATGTTTAACC
18279739 ATCATGTCATTCATGTTTAACC
1 ATCATGTCATTCATGTTTAACC
18279761 ATCATG-CATT
1 ATCATGTCATT
18279771 TGTCATATTA
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
20 6 0.14
21 24 0.57
22 12 0.29
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (22 bp):
ATCATGTCATTCATGTTTAACC
Found at i:18279737 original size:42 final size:42
Alignment explanation
Indices: 18279690--18279770 Score: 162
Period size: 42 Copynumber: 1.9 Consensus size: 42
18279680 AATTACCATG
18279690 CATTCATATCATGTCATTCATGTTTAACCATCATGCATTCAT
1 CATTCATATCATGTCATTCATGTTTAACCATCATGCATTCAT
18279732 CATTCATATCATGTCATTCATGTTTAACCATCATGCATT
1 CATTCATATCATGTCATTCATGTTTAACCATCATGCATT
18279771 TGTCATATTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.28, C:0.23, G:0.07, T:0.41
Consensus pattern (42 bp):
CATTCATATCATGTCATTCATGTTTAACCATCATGCATTCAT
Found at i:18280675 original size:19 final size:19
Alignment explanation
Indices: 18280644--18280685 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
18280634 TTGTTTTCTT
*
18280644 AAAAAATGGAAAAATTA-A
1 AAAAAATGAAAAAATTAGA
18280662 AAAAAATTGAAAAAATTAGA
1 AAAAAA-TGAAAAAATTAGA
18280682 AAAA
1 AAAA
18280686 TGAAAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 10 0.48
20 5 0.24
ACGTcount: A:0.74, C:0.00, G:0.10, T:0.17
Consensus pattern (19 bp):
AAAAAATGAAAAAATTAGA
Found at i:18281679 original size:38 final size:38
Alignment explanation
Indices: 18281635--18281728 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
18281625 GGAGTTGGAA
*
18281635 ATAATAAGATAATACATGCACTACGTCTCATCCACATC
1 ATAATAAGATAATACATGCACTACATCTCATCCACATC
* * * * * *
18281673 TTAATAAGATAGTGCATGCACTCCATCTCATGCATATC
1 ATAATAAGATAATACATGCACTACATCTCATCCACATC
*
18281711 ATAAT-AGA-CATACATGCA
1 ATAATAAGATAATACATGCA
18281729 TTCCATTTTA
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
36 7 0.16
37 3 0.07
38 35 0.78
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (38 bp):
ATAATAAGATAATACATGCACTACATCTCATCCACATC
Found at i:18281734 original size:36 final size:37
Alignment explanation
Indices: 18281660--18281782 Score: 106
Period size: 36 Copynumber: 3.4 Consensus size: 37
18281650 ATGCACTACG
* * * * *
18281660 TCTCATCCACATCTTAATAAGATAGTGCATGCACTCCA
1 TCTCATGCACATCATAAT-AGACAGTACATGCATTCCA
*
18281698 TCTCATGCATATCATAATAGACA-TACATGCATTCCA
1 TCTCATGCACATCATAATAGACAGTACATGCATTCCA
* * ** * * *
18281734 TTTTATGCACATTTTAATAGATAGTA-TTGGATTCCA
1 TCTCATGCACATCATAATAGACAGTACATGCATTCCA
18281770 TCTCATGCACATC
1 TCTCATGCACATC
18281783 TTAGTGGTAA
Statistics
Matches: 67, Mismatches: 17, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
36 46 0.69
37 6 0.09
38 15 0.22
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (37 bp):
TCTCATGCACATCATAATAGACAGTACATGCATTCCA
Found at i:18283899 original size:25 final size:26
Alignment explanation
Indices: 18283852--18283900 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
18283842 TCATCTACAA
18283852 GAAAAGAGCATTGGCATTTGCATTAT
1 GAAAAGAGCATTGGCATTTGCATTAT
18283878 GAAAA-AGTCATT-GCATTTGCATT
1 GAAAAGAG-CATTGGCATTTGCATT
18283901 GAGTATTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 13 0.59
26 9 0.41
ACGTcount: A:0.35, C:0.12, G:0.20, T:0.33
Consensus pattern (26 bp):
GAAAAGAGCATTGGCATTTGCATTAT
Found at i:18284453 original size:31 final size:31
Alignment explanation
Indices: 18284415--18284551 Score: 116
Period size: 31 Copynumber: 4.4 Consensus size: 31
18284405 AAAAAAAATC
* * **
18284415 AGAATTAAGCCTAGTCTAGTTGGCATCGAGG
1 AGAATTAAGCCTAGTCTAGTTGGCACCAAAA
* * *
18284446 AGAATTAAGGCCGA-TTTAGTTGGAACCAAAA
1 AGAATTAA-GCCTAGTCTAGTTGGCACCAAAA
* * *
18284477 AGAATTAAGCCCAGTTTAGTTGGCATCGAAAA
1 AGAATTAAGCCTAGTCTAGTTGGCA-CCAAAA
* * **
18284509 A-AATTAAGCTTAGTCTAGCTGGCACCAAGG
1 AGAATTAAGCCTAGTCTAGTTGGCACCAAAA
18284539 AGAATTAAGCCTA
1 AGAATTAAGCCTA
18284552 CTTTAACTAG
Statistics
Matches: 84, Mismatches: 18, Indels: 8
0.76 0.16 0.07
Matches are distributed among these distances:
30 8 0.10
31 66 0.79
32 10 0.12
ACGTcount: A:0.36, C:0.16, G:0.23, T:0.24
Consensus pattern (31 bp):
AGAATTAAGCCTAGTCTAGTTGGCACCAAAA
Found at i:18284536 original size:62 final size:62
Alignment explanation
Indices: 18284415--18284549 Score: 146
Period size: 62 Copynumber: 2.2 Consensus size: 62
18284405 AAAAAAAATC
* ** * * *
18284415 AGAATTAAGCCTAGTCTAGTTGGCATCGAGGAGAATTAAGGCCGATTTAGTTGGAACCAAAA
1 AGAATTAAGCCCAGTCTAGTTGGCATCGAAAAAAATTAAGGCCGATCTAGCTGGAACCAAAA
* ** * **
18284477 AGAATTAAGCCCAGTTTAGTTGGCATCGAAAAAAATTAA-GCTTAGTCTAGCTGGCACCAAGG
1 AGAATTAAGCCCAGTCTAGTTGGCATCGAAAAAAATTAAGGCCGA-TCTAGCTGGAACCAAAA
18284539 AGAATTAAGCC
1 AGAATTAAGCC
18284550 TACTTTAACT
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 3 0.05
62 57 0.95
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (62 bp):
AGAATTAAGCCCAGTCTAGTTGGCATCGAAAAAAATTAAGGCCGATCTAGCTGGAACCAAAA
Found at i:18284590 original size:31 final size:31
Alignment explanation
Indices: 18284508--18284596 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 31
18284498 GGCATCGAAA
* * * *
18284508 AAAATTAAGCTTAGTCTAGCTGGCACCAAGG
1 AAAATTAAGCCTACTCTAACTAGCACCAAGG
* *
18284539 AGAATTAAGCCTACTTTAACTAGCACCAAGG
1 AAAATTAAGCCTACTCTAACTAGCACCAAGG
* *
18284570 AAAATTTAGCCCTA-TCTAACTAACACC
1 AAAATTAAG-CCTACTCTAACTAGCACC
18284597 TATGAAGATT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
31 43 0.91
32 4 0.09
ACGTcount: A:0.38, C:0.24, G:0.15, T:0.24
Consensus pattern (31 bp):
AAAATTAAGCCTACTCTAACTAGCACCAAGG
Found at i:18284702 original size:31 final size:32
Alignment explanation
Indices: 18284596--18284703 Score: 100
Period size: 32 Copynumber: 3.5 Consensus size: 32
18284586 TAACTAACAC
* *
18284596 CTATGAAGATTTAAGTCCAGTCCAGCTGGCA-
1 CTATGAAGATTTAAGTCCAATCTAGCTGGCAT
* * * *
18284627 CCAAGAA-AATTAAG-CATAATCTAGCTGGCAT
1 CTATGAAGATTTAAGTC-CAATCTAGCTGGCAT
*
18284658 CTATGAAGATTTAAGTCCAATCTAGCTGGTAT
1 CTATGAAGATTTAAGTCCAATCTAGCTGGCAT
18284690 -TGATG-AGATTTAAG
1 CT-ATGAAGATTTAAG
18284704 CTCAGCTTAG
Statistics
Matches: 61, Mismatches: 11, Indels: 10
0.74 0.13 0.12
Matches are distributed among these distances:
29 1 0.02
30 17 0.28
31 20 0.33
32 22 0.36
33 1 0.02
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (32 bp):
CTATGAAGATTTAAGTCCAATCTAGCTGGCAT
Found at i:18284733 original size:33 final size:33
Alignment explanation
Indices: 18284691--18284773 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
18284681 AGCTGGTATT
*
18284691 GATGAGATTTAAG-CTCAGCTTAGCTAGCACCAA
1 GATGAGATTTAAGCCTAAG-TTAGCTAGCACCAA
* *
18284724 GATGAGATTTAAGCCTAAGTTAGTTGGCACCAA
1 GATGAGATTTAAGCCTAAGTTAGCTAGCACCAA
18284757 GATGAGATCATTAAGCC
1 GATGAGAT--TTAAGCC
18284774 CAATGAAATT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 33 0.75
34 4 0.09
35 7 0.16
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (33 bp):
GATGAGATTTAAGCCTAAGTTAGCTAGCACCAA
Found at i:18284937 original size:29 final size:29
Alignment explanation
Indices: 18284880--18284937 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
18284870 GAATGAAGGG
* * * * *
18284880 TGGACAATGATGATGAAATAATGAGTAAA
1 TGGAAAATGATGAAGAAAGAATAAATAAA
18284909 TGGAAAATGATGAAGAAAGAATAAATAAA
1 TGGAAAATGATGAAGAAAGAATAAATAAA
18284938 GATAAATGAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.55, C:0.02, G:0.22, T:0.21
Consensus pattern (29 bp):
TGGAAAATGATGAAGAAAGAATAAATAAA
Found at i:18285436 original size:48 final size:47
Alignment explanation
Indices: 18285373--18285734 Score: 341
Period size: 48 Copynumber: 7.5 Consensus size: 47
18285363 AACCAAACTT
* *
18285373 CCTTTTCCAATTGAGATTTTTAAAGTTCCCTGCTTATGTTTATAGAAG
1 CCTTTT-CAAATGAGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
* * * *
18285421 CCTTTTCAACATGAGATTTTTAAAGTTCCCTACCTATGTTTTTAAAAA
1 CCTTTTCAA-ATGAGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
* * *
18285469 CCTTTTCGAAAAGAAGATTTTTAAAGTTCCATGCCTATGTTTATAGGAG
1 CCTTTTC-AAATG-AGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
* * * * *
18285518 CTTTTTTCAAAGTGAAAATTTTAAAGTTCCCTACCTATGTTTATAAAAG
1 C-CTTTTCAAA-TGAGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
* * * *
18285567 CCTTTTCAAAGTGAAATTTTTAAAGTTTCTTGCCTATGTTTATAGGAG
1 CCTTTTCAAA-TGAGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
* * * * *
18285615 CCTTTTCAAAAGGAGATTTTTAAAGTTACTTG-TTGATGTTCATATG-AG
1 CCTTTTC-AAATGAGATTTTTAAAGTTCCCTGCCT-ATGTTTATA-GAAG
* * * * *
18285663 CCTTTTCAAAAGGAGATTTTTAAAGTTACTTGCCAATGTTTATAAAAG
1 CCTTTTC-AAATGAGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
*
18285711 CTTTTTCCAAATGAGATTTTTAAA
1 CCTTTT-CAAATGAGATTTTTAAA
18285735 ATTTCTTAGC
Statistics
Matches: 264, Mismatches: 39, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
47 4 0.02
48 184 0.70
49 70 0.27
50 6 0.02
ACGTcount: A:0.31, C:0.14, G:0.14, T:0.41
Consensus pattern (47 bp):
CCTTTTCAAATGAGATTTTTAAAGTTCCCTGCCTATGTTTATAGAAG
Found at i:18285780 original size:12 final size:12
Alignment explanation
Indices: 18285763--18285809 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
18285753 TTCAAGACTT
18285763 AAAAAAAAAAAC
1 AAAAAAAAAAAC
*
18285775 AAAAAAGAAAAC
1 AAAAAAAAAAAC
*
18285787 AAACAAAAAAAGAG
1 AAA-AAAAAAA-AC
18285801 AAAAAAAAA
1 AAAAAAAAA
18285810 GCAAGCGACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
12 14 0.47
13 12 0.40
14 4 0.13
ACGTcount: A:0.87, C:0.06, G:0.06, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:18285790 original size:16 final size:14
Alignment explanation
Indices: 18285763--18285797 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 14
18285753 TTCAAGACTT
18285763 AAAAAAAAAAACAA
1 AAAAAAAAAAACAA
18285777 AAAAGAAAACAAACAA
1 AAAA-AAAA-AAACAA
18285793 AAAAA
1 AAAAA
18285798 GAGAAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 5 0.26
16 10 0.53
ACGTcount: A:0.89, C:0.09, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAA
Found at i:18286527 original size:143 final size:143
Alignment explanation
Indices: 18286380--18286638 Score: 312
Period size: 142 Copynumber: 1.8 Consensus size: 143
18286370 TCCCATAAGA
* * * *
18286380 GTATTTTTATAATTTGACCTTTTTGAA-GTTGGCTTTTCATG-AAATGCCTT-AGATCATGATTT
1 GTATTTGTATAATTTGACCTTCTT-AAGGTT-GATTTT-ATGTAAATG-CTTCAAATCATG-TTT
* * *
18286442 T-ATATTATTTCATGATTTTTAGTGTCTTAAAAACCTTGA-CGCACCTCGAAAGGTGTGAAATAA
61 TCACATTATTTCATGATTTTTAGTATATTAAAAACCTTGATCGCACCTCGAAAGGTGTGAAATAA
18286505 AAAAAATGCCTTAAAGGG
126 AAAAAATGCCTTAAAGGG
* *
18286523 GTATTTGTGTAATTTGACCTTCTTAAGGTTGATTTTTTGTAAATGCTTCAAATCATGTTTTCACA
1 GTATTTGTATAATTTGACCTTCTTAAGGTTGATTTTATGTAAATGCTTCAAATCATGTTTTCACA
* * * * *
18286588 TTATTTGATGATTTTTGGTATATTAAAAACTTTGATTGCACTTCGAAAGGT
66 TTATTTCATGATTTTTAGTATATTAAAAACCTTGATCGCACCTCGAAAGGT
18286639 ATAACTCAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
141 9 0.09
142 51 0.53
143 37 0.38
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (143 bp):
GTATTTGTATAATTTGACCTTCTTAAGGTTGATTTTATGTAAATGCTTCAAATCATGTTTTCACA
TTATTTCATGATTTTTAGTATATTAAAAACCTTGATCGCACCTCGAAAGGTGTGAAATAAAAAAA
ATGCCTTAAAGGG
Found at i:18288204 original size:19 final size:19
Alignment explanation
Indices: 18288168--18288204 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
18288158 TTTCCCATAT
*
18288168 AATCCCAAATCACCATCCA
1 AATCCCAAACCACCATCCA
*
18288187 AATCCCAAACCACTATCC
1 AATCCCAAACCACCATCC
18288205 CAACCAAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.43, G:0.00, T:0.16
Consensus pattern (19 bp):
AATCCCAAACCACCATCCA
Found at i:18289150 original size:2 final size:2
Alignment explanation
Indices: 18289143--18289167 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
18289133 ACATTGCAAC
18289143 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
18289168 GAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:18289608 original size:10 final size:8
Alignment explanation
Indices: 18289580--18289618 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
18289570 ATTTTATTAT
18289580 TATTTTTA
1 TATTTTTA
18289588 TATTTTTA
1 TATTTTTA
18289596 TATTATATTA
1 TATT-T-TTA
18289606 TATTTTTA
1 TATTTTTA
18289614 T-TTTT
1 TATTTT
18289619 ATTTACATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 4 0.14
8 16 0.55
9 2 0.07
10 7 0.24
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (8 bp):
TATTTTTA
Found at i:18289608 original size:18 final size:19
Alignment explanation
Indices: 18289571--18289641 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 19
18289561 ATAATGTGTA
*
18289571 TTTTATTATTATTTTTATAT
1 TTTTA-TATTATTATTATAT
18289591 TTTTATATTA-TATTATAT
1 TTTTATATTATTATTATAT
*
18289609 TTTTAT-TT-TTATT-TACA
1 TTTTATATTATTATTATA-T
18289626 TTTTACTATTATTATT
1 TTTTA-TATTATTATT
18289642 TTTTTATTGC
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
16 2 0.05
17 11 0.25
18 14 0.32
19 7 0.16
20 10 0.23
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTATATTATTATTATAT
Found at i:18290014 original size:23 final size:22
Alignment explanation
Indices: 18289980--18290028 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
18289970 TGTACTTTGC
*
18289980 TGAGATTTTAGGTTT-GAGTTTT
1 TGAGATTCTAGGTTTGGA-TTTT
18290002 TGAGAATTCTAGGTTTGGATTTT
1 TGAG-ATTCTAGGTTTGGATTTT
18290025 TGAG
1 TGAG
18290029 TTTTTGGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 4 0.17
23 18 0.75
24 2 0.08
ACGTcount: A:0.20, C:0.02, G:0.29, T:0.49
Consensus pattern (22 bp):
TGAGATTCTAGGTTTGGATTTT
Found at i:18290545 original size:7 final size:6
Alignment explanation
Indices: 18290501--18290554 Score: 58
Period size: 6 Copynumber: 9.2 Consensus size: 6
18290491 TTTTTAAAGC
* * *
18290501 TTTTTA -TTTTA -TTTTA TTCTTC TTTTTA TTTTTA TTTTCA TTTTTCA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT-A
18290548 TTTTTA T
1 TTTTTA T
18290555 GTTATTGATT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
5 10 0.25
6 24 0.60
7 6 0.15
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:18290550 original size:19 final size:18
Alignment explanation
Indices: 18290507--18290554 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
18290497 AAGCTTTTTA
18290507 TTTTA-TTTTATTCTTCT
1 TTTTATTTTTATTCTTCT
18290524 TTTTATTTTTATT-TTCAT
1 TTTTATTTTTATTCTTC-T
18290542 TTTTCATTTTTAT
1 TTTT-ATTTTTAT
18290555 GTTATTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.29
18 12 0.43
19 8 0.29
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTTATTTTTATTCTTCT
Found at i:18302385 original size:55 final size:55
Alignment explanation
Indices: 18302292--18302410 Score: 150
Period size: 55 Copynumber: 2.2 Consensus size: 55
18302282 CTTGTGATTT
* * * * *
18302292 AATCCTAGTTGTTCGATCTCAGCTTAGTTCAGAACATTTGTCTAACTAG-CAGTTC
1 AATCCTGGTTGTTCAATCTCAGCTCAATCCAGAACATTTGTCTAACTAGCCA-TTC
* * *
18302347 AATCCTGGTTGTTCAATCTCAGCTCAATCCAGATCATTTTTCTAACTTGCCATTC
1 AATCCTGGTTGTTCAATCTCAGCTCAATCCAGAACATTTGTCTAACTAGCCATTC
18302402 AATCCTGGT
1 AATCCTGGT
18302411 CATTCGATCT
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
55 53 0.96
56 2 0.04
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.37
Consensus pattern (55 bp):
AATCCTGGTTGTTCAATCTCAGCTCAATCCAGAACATTTGTCTAACTAGCCATTC
Found at i:18302776 original size:3 final size:3
Alignment explanation
Indices: 18302768--18302861 Score: 66
Period size: 3 Copynumber: 31.3 Consensus size: 3
18302758 AAATAATTTG
18302768 TAT TAT TAT CT-T TAT TAT TAT T-T CTAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT
* * * * * * * * * *
18302813 TGT TGT TGT TGT TGT TGT TGT TAT TAT TAT TGT TAT TGT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
18302861 T
1 T
18302862 TTCTTTCCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 8
0.83 0.08 0.08
Matches are distributed among these distances:
2 2 0.03
3 75 0.95
4 2 0.03
ACGTcount: A:0.20, C:0.02, G:0.11, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:18302788 original size:6 final size:6
Alignment explanation
Indices: 18302779--18302861 Score: 78
Period size: 6 Copynumber: 13.8 Consensus size: 6
18302769 ATTATTATCT
* * * * * *
18302779 TTATTA TTATT- TCTATTA TTATTA TTATTA TTATTG TTGTTG TTGTTG
1 TTATTG TTATTG T-TATTG TTATTG TTATTG TTATTG TTATTG TTATTG
* *
18302827 TTGTTG TTATTA TTATTG TTATTG TTATTG TTATT
1 TTATTG TTATTG TTATTG TTATTG TTATTG TTATT
18302862 TTCTTTCCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
5 1 0.01
6 68 0.97
7 1 0.01
ACGTcount: A:0.19, C:0.01, G:0.12, T:0.67
Consensus pattern (6 bp):
TTATTG
Found at i:18303220 original size:23 final size:23
Alignment explanation
Indices: 18303184--18303229 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
18303174 GTACTTTGTT
*
18303184 GGAATTTTAAGTTT-GAGTTTTTG
1 GGAATTCTAAGTTTGGA-TTTTTG
*
18303207 GGAATTCTAGGTTTGGATTTTTG
1 GGAATTCTAAGTTTGGATTTTTG
18303230 ACTTTTTTGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 18 0.90
24 2 0.10
ACGTcount: A:0.20, C:0.02, G:0.28, T:0.50
Consensus pattern (23 bp):
GGAATTCTAAGTTTGGATTTTTG
Found at i:18307517 original size:25 final size:25
Alignment explanation
Indices: 18307488--18307535 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
18307478 AAATAAAGCC
18307488 ATCTATAATAGCCATATTGTTCAAA
1 ATCTATAATAGCCATATTGTTCAAA
* *
18307513 ATCTATAGTAGCCATCTTGTTCA
1 ATCTATAATAGCCATATTGTTCA
18307536 CACTTCATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (25 bp):
ATCTATAATAGCCATATTGTTCAAA
Found at i:18309472 original size:33 final size:33
Alignment explanation
Indices: 18309434--18309506 Score: 137
Period size: 33 Copynumber: 2.2 Consensus size: 33
18309424 TTAAAAACTA
18309434 AATTTCTTATGTTTTTAAAGATTGTTTATATTT
1 AATTTCTTATGTTTTTAAAGATTGTTTATATTT
*
18309467 AATTTCTTATGTTTTTAAAGATTGTTTATCTTT
1 AATTTCTTATGTTTTTAAAGATTGTTTATATTT
18309500 AATTTCT
1 AATTTCT
18309507 AGCTTTGTTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.26, C:0.05, G:0.08, T:0.60
Consensus pattern (33 bp):
AATTTCTTATGTTTTTAAAGATTGTTTATATTT
Found at i:18317644 original size:15 final size:16
Alignment explanation
Indices: 18317621--18317653 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
18317611 AAATACTGCT
*
18317621 ATATTAAGATT-TATA
1 ATATAAAGATTGTATA
18317636 ATATAAAGATTGTATA
1 ATATAAAGATTGTATA
18317652 AT
1 AT
18317654 TTGTTGAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (16 bp):
ATATAAAGATTGTATA
Found at i:18325656 original size:22 final size:21
Alignment explanation
Indices: 18325631--18325673 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
18325621 TTTTTTGAAA
*
18325631 TTTAAAATTTATAGATCTTATT
1 TTTAAAAATTATA-ATCTTATT
*
18325653 TTTAAAAATTATAATTTTATT
1 TTTAAAAATTATAATCTTATT
18325674 AAAAAATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
TTTAAAAATTATAATCTTATT
Found at i:18327677 original size:17 final size:17
Alignment explanation
Indices: 18327652--18327687 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
18327642 TTTCAAAACC
*
18327652 ATCATGATAATTTCATT
1 ATCAAGATAATTTCATT
*
18327669 ATCAAGATAATTTTATT
1 ATCAAGATAATTTCATT
18327686 AT
1 AT
18327688 TATAGTGATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (17 bp):
ATCAAGATAATTTCATT
Found at i:18327772 original size:22 final size:23
Alignment explanation
Indices: 18327730--18327772 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
18327720 ATTTTATTTG
* *
18327730 ATTAAAAATCATTAATTTTTGTA
1 ATTAAAAATCACTAATATTTGTA
18327753 ATTAAAAATCACT-ATATTTG
1 ATTAAAAATCACTAATATTTG
18327773 GTGAAGAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (23 bp):
ATTAAAAATCACTAATATTTGTA
Found at i:18329995 original size:31 final size:31
Alignment explanation
Indices: 18329939--18330034 Score: 97
Period size: 31 Copynumber: 3.1 Consensus size: 31
18329929 AATTTTGGGT
* * *
18329939 TTTTCGATCAATTTTCTTGCT-AGGTTTGAAC
1 TTTTAGATCAATTTT-TTGATGAGGTTTGAAA
* *
18329970 TTTTAGATTAATTTTTTGGTGAGGTTTGAAA
1 TTTTAGATCAATTTTTTGATGAGGTTTGAAA
** *
18330001 TTTTTTATCAATTTTTTGATTAGGTTT-AAA
1 TTTTAGATCAATTTTTTGATGAGGTTTGAAA
18330031 TTTT
1 TTTT
18330035 CTTGTAGGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
30 11 0.20
31 44 0.80
ACGTcount: A:0.23, C:0.06, G:0.16, T:0.55
Consensus pattern (31 bp):
TTTTAGATCAATTTTTTGATGAGGTTTGAAA
Found at i:18330717 original size:12 final size:12
Alignment explanation
Indices: 18330702--18330730 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
18330692 TATTTAACCT
18330702 TGTATTTTATTA
1 TGTATTTTATTA
18330714 TGTATTTTATTA
1 TGTATTTTATTA
18330726 T-TATT
1 TGTATT
18330731 ATGAATTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (12 bp):
TGTATTTTATTA
Found at i:18330745 original size:18 final size:18
Alignment explanation
Indices: 18330701--18330745 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
18330691 GTATTTAACC
* *
18330701 TTGTATTTTATTATGTAT
1 TTGTATATTATTATGAAT
18330719 TT-TATTATTATTATGAAT
1 TTGTA-TATTATTATGAAT
18330737 TTGTATATT
1 TTGTATATT
18330746 TAAATTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 2 0.09
18 19 0.83
19 2 0.09
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (18 bp):
TTGTATATTATTATGAAT
Found at i:18343145 original size:38 final size:38
Alignment explanation
Indices: 18343103--18343175 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
18343093 ATTCATCTGC
18343103 TTACTTGTTAATTTTCAATTTATTACATTTAATTTATT
1 TTACTTGTTAATTTTCAATTTATTACATTTAATTTATT
* *
18343141 TTACTTGTTAATTTTCATTTTATTGCATTTAATTT
1 TTACTTGTTAATTTTCAATTTATTACATTTAATTT
18343176 GTTACATTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.26, C:0.08, G:0.04, T:0.62
Consensus pattern (38 bp):
TTACTTGTTAATTTTCAATTTATTACATTTAATTTATT
Found at i:18347679 original size:43 final size:42
Alignment explanation
Indices: 18347604--18347720 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 42
18347594 ATAGAATGAG
* **
18347604 CTTTTTAAATTTTTAAAAAGTTGTTAAACCTCTAATGAAATTAA
1 CTTTTTAAATTTTT--AAAGTTGTTAAGCCTCTAATGAAAGGAA
* *
18347648 CTTTTTAAATTTTTCAAAGTTGTTAAGCCTCTATTTAAAGGAA
1 CTTTTTAAATTTTT-AAAGTTGTTAAGCCTCTAATGAAAGGAA
* * *
18347691 GTTTTT-AATTTTTAAAATTGTTGAGCCTCT
1 CTTTTTAAATTTTTAAAGTTGTTAAGCCTCT
18347721 GTTTAGAGGA
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
41 15 0.23
42 7 0.11
43 28 0.44
44 14 0.22
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.46
Consensus pattern (42 bp):
CTTTTTAAATTTTTAAAGTTGTTAAGCCTCTAATGAAAGGAA
Found at i:18347771 original size:44 final size:44
Alignment explanation
Indices: 18347648--18347825 Score: 154
Period size: 43 Copynumber: 4.1 Consensus size: 44
18347638 ATGAAATTAA
* * ** * *
18347648 CTTTT-TAAATTTTTCAAAGTTGTTAAGCCTCTATTTAAAGGAAG
1 CTTTTGTATATTTTTAAAAGTCATTAAGCCTCTGTTTAGAGG-AG
** *
18347692 -TTTT-TA-ATTTTTAAAA-TTGTTGAGCCTCTGTTTAGAGGAG
1 CTTTTGTATATTTTTAAAAGTCATTAAGCCTCTGTTTAGAGGAG
* **
18347732 CCTTTTGTAT-TTTTTAAAAGTCATTAAGCCCCTGTTTAGAATAG
1 -CTTTTGTATATTTTTAAAAGTCATTAAGCCTCTGTTTAGAGGAG
* *
18347776 CTTTT-TATATTTTTAAAAGTCTTTAAACCTCTGTTTAGAGGAG
1 CTTTTGTATATTTTTAAAAGTCATTAAGCCTCTGTTTAGAGGAG
18347819 TCTTTTG
1 -CTTTTG
18347826 GGGAAAAAAA
Statistics
Matches: 111, Mismatches: 15, Indels: 15
0.79 0.11 0.11
Matches are distributed among these distances:
40 2 0.02
41 19 0.17
42 16 0.14
43 51 0.46
44 23 0.21
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (44 bp):
CTTTTGTATATTTTTAAAAGTCATTAAGCCTCTGTTTAGAGGAG
Done.