Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168471.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_70, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129858
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 1 of 4
Found at i:455 original size:181 final size:180
Alignment explanation
Indices: 1--891 Score: 804
Period size: 181 Copynumber: 4.9 Consensus size: 180
** * * ** * *
1 AAAATAAATGT-GTTTGTCGAATCAGTTTAAATAGTTAAAACTATTAGAATAATTATCTATTTCA
1 AAAATAAAT-TAGTTTACCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * * ** *** *
65 AATCATTTTGACCTTTTGTTTAATCATAAAATAATTGCTTCAACTCATACATTTTTATTTGAAAT
65 AATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTAGTTCATACAAGCTTATTCGAAAT
* * * * * *
130 AAAATAATACTAATGTATTAACATTAAAAAAATT-ATTAAGTAAGAAATTAGA
130 AAAATAATACTAATTTATTAATATTATAAAAATTAATAAATTAAG-ATTTA-A
* * *
182 AAAA-AAATCTA-TTTACCGAAT-AAGTTCAAATATTTTTGACTATTTGAACAATTATCTATTTA
1 AAAATAAAT-TAGTTTACCGAATCAA-TTCAAATAGTTATGACTATTTGAACAATTATCTATTTC
* * * * * *
244 AAATCGTTATGACCTTATATTTTATCATAAAACAAGTGTTTTAGTTCATAAAAGCTTATTTGAAA
64 AAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTAGTTCATACAAGCTTATTCGAAA
* * *
309 TAAAATAATATTACTTTATTAATATTATAAAAATTGATAAATTAGAGATTTAA
129 TAAAATAATACTAATTTATTAATATTATAAAAATTAATAAATTA-AGATTTAA
* * * * * * * * *
362 AACACAGATGACTTTATCGAATCAATTCAAATAATTATGGCCATTT-AAGCAATTATCTATTTCA
1 AAAATAAATTAGTTTACCGAATCAATTCAAATAGTTATGACTATTTGAA-CAATTATCTATTTCA
* * * *
426 AATCATTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCAG--CATACAAGCCTATTCAAA
65 AATCATTATGACCTTTTGTTTTATCATAAAACAATTG-TTTT-AGTTCATACAAGCTTATTCGAA
* * *
489 ATAAAATAATACTAATTTATTAATATT-TGAAATATTAATAAGTAAAAGATTTAA
128 ATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAAAT-TAAGATTTAA
* * * * *
543 AAAATAAATCT-GTTTATCGAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCC
1 AAAATAAAT-TAGTTTACCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA
* * * * * *
607 AATCGTTATAACATTTTGTTTTGTCATAAAACAATT-ATTTATCTTCATACAAGCTTATTCGAAA
65 AATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTA-GTTCATACAAGCTTATTCGAAA
* * * *
671 TAAAATAATACTAATCTAATAATATTATGAAATTTAAT-AATTGATAGATTTAA
129 TAAAATAATACTAATTTATTAATATTATAAAAATTAATAAATT-A-AGATTTAA
* * * *
724 AAAATAAATTTGTTTACCGAATCAATTCAAATAGTTA-AAGCTATATGAATAATTATCTATTTCA
1 AAAATAAATTAGTTTACCGAATCAATTCAAATAGTTATGA-CTATTTGAACAATTATCTATTTCA
* * * * **
788 AAT-AGTTATGACCTTTTGTTTTATCATAAAACAAATGTTTTCGTTCATATAAGTTTGCTCGAAA
65 AATCA-TTATGACCTTTTGTTTTATCATAAAACAATTGTTTTAGTTCATACAAGCTTATTCGAAA
*
852 TAAAATAATATTAATTTATTAATATT-TCAAAAATTAATAA
129 TAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAA
892 GAGATTTAAT
Statistics
Matches: 574, Mismatches: 110, Indels: 51
0.78 0.15 0.07
Matches are distributed among these distances:
178 1 0.00
179 4 0.01
180 137 0.24
181 414 0.72
182 16 0.03
183 2 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.40
Consensus pattern (180 bp):
AAAATAAATTAGTTTACCGAATCAATTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAA
ATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTAGTTCATACAAGCTTATTCGAAATA
AAATAATACTAATTTATTAATATTATAAAAATTAATAAATTAAGATTTAA
Found at i:696 original size:362 final size:360
Alignment explanation
Indices: 51--968 Score: 957
Period size: 362 Copynumber: 2.5 Consensus size: 360
41 CTATTAGAAT
* * * * *
51 AATTATCTATTTCAAATCATTTTGACCTTTTGTTTAATCATAAAATAATTG-CTTCAACTCATAC
1 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTC-A-GCATAC
** * * * * *
115 ATTTTTATTTGAAATAAAATAATACTAATGTATTAACATTAAAAAAATTATTAAGTAAGAA-A-T
64 AAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAA-AAGATT
* * * * *
178 TAGAAAAA-AAATCTATTTACCGAATAAGTTCAAATATTTTTGACTATTTGAACAATTATCTATT
128 TA-AAAAATAAATCTATTTA-CGAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATT
* * * * *
242 TAAAATCGTTATGACCTTATATTTTATCATAAAACAAGTGTTTTAGTTCATAAAAGCTTATTTGA
191 TCAAATCGTTATAACATTATATTTTATCATAAAACAAGTGTTTTACTTCATAAAAGCTTATTCGA
* * * * * * *
307 AATAAAATAATATTACTTTATTAATATTATAAAAATTGATAAATT-AGAGATTTAAAACACAGAT
256 AATAAAATAATACTAATCTAATAATATTATAAAAATTAAT-AATTGAGAGATTTAAAAAACAAAT
* ** *
371 GACTTTATCGAATCAATTCAAATAATTATGGCCAT-TTAAGC
320 GACTTTACCGAATCAATTCAAATAATTAAAGCCATATGAA-C
* *
412 AATTATCTATTTCAAATCATTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCAGCATACA
1 AATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTG-TTTTCAGCATACA
** * * *
477 AGCCTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAATATTAATAAGTAAAAGATTTA
65 AGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAAAAGATTTA
* *
542 AAAAATAAATCTGTTTATCGAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCC
130 AAAAATAAATCTATTTA-CGAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCA
* * * *
607 AATCGTTATAACATTTTGTTTTGTCATAAAACAA-T-TATTTATCTTCATACAAGCTTATTCGAA
194 AATCGTTATAACATTATATTTTATCATAAAACAAGTGT-TTTA-CTTCATAAAAGCTTATTCGAA
* * * * **
670 ATAAAATAATACTAATCTAATAATATTATGAAATTTAATAATTGATAGATTTAAAAAATAAATTT
257 ATAAAATAATACTAATCTAATAATATTATAAAAATTAATAATTGAGAGATTTAAAAAACAAATGA
* * * *
735 GTTTACCGAATCAATTCAAATAGTTAAAGCTATATGAAT
322 CTTTACCGAATCAATTCAAATAATTAAAGCCATATGAAC
*
774 AATTATCTATTTCAAAT-AGTTATGACCTTTTGTTTTATCATAAAACAAATGTTTTC-GTTCATA
1 AATTATCTATTTCAAATCA-TTATGACCTTTTGTTTTATCATAAAACAATTGTTTTCAG--CATA
* ** * *
837 TAAGTTTGCTCGAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAG----AGATT
63 CAAGTTTATTCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAAAAGATT
* * * * * * * *
898 TAATAAATAAATCTATTTAC-CATACTAGTTCAATTGGTTATAACAATTTGAATATTTATTTATT
128 TAAAAAATAAATCTATTTACGAAT-C-AGTTCAAATAGTTATGACTATTTGAATAATTATATATT
962 TCAAATC
191 TCAAATC
969 ATGCTAAATT
Statistics
Matches: 464, Mismatches: 79, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
356 2 0.00
357 2 0.00
358 60 0.13
360 4 0.01
361 118 0.25
362 272 0.59
363 6 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (360 bp):
AATTATCTATTTCAAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTCAGCATACAA
GTTTATTCGAAATAAAATAATACTAATTTATTAATATTTAAAAAATTAATAAGTAAAAGATTTAA
AAAATAAATCTATTTACGAATCAGTTCAAATAGTTATGACTATTTGAATAATTATATATTTCAAA
TCGTTATAACATTATATTTTATCATAAAACAAGTGTTTTACTTCATAAAAGCTTATTCGAAATAA
AATAATACTAATCTAATAATATTATAAAAATTAATAATTGAGAGATTTAAAAAACAAATGACTTT
ACCGAATCAATTCAAATAATTAAAGCCATATGAAC
Found at i:1235 original size:20 final size:19
Alignment explanation
Indices: 1210--1270 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 19
1200 GTACTTATAA
1210 TTAATTATTATTAATATTAT
1 TTAATTATTA-TAATATTAT
*
1230 TTAATTA-TATACTATTATT
1 TTAATTATTATAATATTA-T
1249 ATTATATGTATTATAATATTAT
1 -TTA-AT-TATTATAATATTAT
1271 AACTAATTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
18 7 0.21
19 3 0.09
20 10 0.29
21 2 0.06
22 3 0.09
23 9 0.26
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
TTAATTATTATAATATTAT
Found at i:1270 original size:17 final size:18
Alignment explanation
Indices: 1248--1289 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
1238 ATACTATTAT
*
1248 TATTATATGT-ATTATAA
1 TATTATATCTAATTATAA
*
1265 TATTATAACTAATTATAA
1 TATTATATCTAATTATAA
1283 T-TTATAT
1 TATTATAT
1290 AAAATAGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TATTATATCTAATTATAA
Found at i:1270 original size:33 final size:29
Alignment explanation
Indices: 1204--1324 Score: 92
Period size: 30 Copynumber: 4.1 Consensus size: 29
1194 ATTACAGTAC
*
1204 TTATAATTAATTATTATTAATATTATTTAA
1 TTATAACTAATTATTATT-ATATTATTTAA
1234 TTATATACT-ATTATTATTATATGTATTATAATA
1 TTATA-ACTAATTATTATTATAT-TATT-T-A-A
* *
1267 TTATAACTAATTATAATT-TA-TA-TAAA
1 TTATAACTAATTATTATTATATTATTTAA
*
1293 ATAGTAAC-AATTATTAATTATATTA-TTAA
1 TTA-TAACTAATTATT-ATTATATTATTTAA
1322 TTA
1 TTA
1325 AATATTTAAT
Statistics
Matches: 74, Mismatches: 7, Indels: 21
0.73 0.07 0.21
Matches are distributed among these distances:
26 9 0.12
27 8 0.11
28 2 0.03
29 12 0.16
30 20 0.27
31 3 0.04
32 6 0.08
33 14 0.19
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (29 bp):
TTATAACTAATTATTATTATATTATTTAA
Found at i:1323 original size:19 final size:18
Alignment explanation
Indices: 1301--1374 Score: 60
Period size: 20 Copynumber: 3.8 Consensus size: 18
1291 AAATAGTAAC
*
1301 AATTATTAATTATATTATT
1 AATTAATAATTA-ATTATT
*
1320 AATTAAATATTTAATTATT
1 AATT-AATAATTAATTATT
*
1339 AATTAAAATAATATGATTATTT
1 AATT--AATAAT-TAATTA-TT
1361 AATTAATAA-TAATT
1 AATTAATAATTAATT
1375 GTTATTTATT
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
18 4 0.09
19 14 0.30
20 17 0.37
21 5 0.11
22 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (18 bp):
AATTAATAATTAATTATT
Found at i:1395 original size:24 final size:24
Alignment explanation
Indices: 1302--1413 Score: 70
Period size: 24 Copynumber: 4.6 Consensus size: 24
1292 AATAGTAACA
* *
1302 ATTATTAATTATATTATTAATTAAAT
1 ATTATTAATTA-AAT-TTAAATAAAT
*
1328 A-T-TTAATTATTAATTAAAAT-AAT
1 ATTATTAATTA--AATTTAAATAAAT
* * * *
1351 ATGATT-ATTTAATTAATAATAATT
1 ATTATTAATTAAATTTA-AATAAAT
* *
1375 GTTATTTATTAAATTTAAATAAAT
1 ATTATTAATTAAATTTAAATAAAT
1399 ATTATTAATTAAATT
1 ATTATTAATTAAATT
1414 ATTATACATT
Statistics
Matches: 67, Mismatches: 13, Indels: 14
0.71 0.14 0.15
Matches are distributed among these distances:
22 6 0.09
23 7 0.10
24 39 0.58
25 14 0.21
26 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (24 bp):
ATTATTAATTAAATTTAAATAAAT
Found at i:2270 original size:179 final size:179
Alignment explanation
Indices: 1687--2371 Score: 794
Period size: 181 Copynumber: 3.8 Consensus size: 179
1677 TAATAATATA
** * * *
1687 TTAT-ACAAAACAAAAGGTCATAAGGATTTGAAATAGAA-AATTATTTAAATGGTCATAATTATT
1 TTATCACAAAACAAAAGGTCATAACTATTTGAAATA-AATAATTATTCAAATAGTCATAACTA-T
* * * *
1750 TTGAACGTGCTCAAAAAACAAATTTATTTTATATATTTTTACTTATTAATCTTTGGAATATTAGT
64 TTGAACATGCTCAAAAAACAAATTTATTTTTTAAATTTTTACTTATTAAT-TTTGGAATATTAAT
* *
1815 AAATTTATATTATTTTATTTGAAATAAGCTTGTATGAACAGAAACAATTGTT
128 AAATTTATATTATTTTATTTGAAATAAGCTTGTATGGACAGAAACAATTGGT
* * * * * * *
1867 TTATGACAAAAAAAAAGATCATAACTATTAGAAATAAAAAATTATTCAAACAGTTATAACTATTT
1 TTATCACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT
* * * * *
1932 -AAGCTTACTCAATAAATAAATTTATTTTTTAAATCTTTTACTTATTAATTGTTGGAATATTATT
66 GAA-CATGCTCAAAAAACAAATTTATTTTTTAAAT-TTTTACTTATTAATT-TTGGAATATTAAT
** * *
1996 AAA-TTAGTATTATTTTATTTTTAATAAGCTTATATAGACA-AAACAATTGGT
128 AAATTTA-TATTATTTTATTTGAAATAAGCTTGTATGGACAGAAACAATTGGT
* * * * *
2047 TCATCATAAAACAAAAAGGTCATAACTATTTGAAATAGATAATTGTTCAAATAGTCA-AATTTAT
1 TTATCACAAAAC-AAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCATAA-CTAT
* *
2111 TTGAACATGTTCAAAAAATAAATTTA-TTTTTAGAATTTTTACTTATTAAATTTTGGAATATTAA
64 TTGAACATGCTCAAAAAACAAATTTATTTTTTA-AATTTTTACTTATT-AATTTTGGAATATTAA
* * *
2175 TAAATTTA-ATTATTTTATTCGGAATAAGCTTGTATGGATAGAAACAATTGGT
127 TAAATTTATATTATTTTATTTGAAATAAGCTTGTATGGACAGAAACAATTGGT
* * * * *
2227 TTATCACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTGTTCAAATATTTAGAACTATTC
1 TTATCACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT
* * *
2292 GAACATGTTTAAAAAACAAATTTATTTTTTAAATTTTTACTTATTAAATTTTGGAATATTAATTA
66 GAACATGCTCAAAAAACAAATTTATTTTTTAAATTTTTACTTATT-AATTTTGGAATATTAATAA
2357 ATTTA-ATTATTTTAT
130 ATTTATATTATTTTAT
2372 GACAAAACAA
Statistics
Matches: 434, Mismatches: 56, Indels: 31
0.83 0.11 0.06
Matches are distributed among these distances:
179 143 0.33
180 119 0.27
181 170 0.39
182 2 0.00
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.41
Consensus pattern (179 bp):
TTATCACAAAACAAAAGGTCATAACTATTTGAAATAAATAATTATTCAAATAGTCATAACTATTT
GAACATGCTCAAAAAACAAATTTATTTTTTAAATTTTTACTTATTAATTTTGGAATATTAATAAA
TTTATATTATTTTATTTGAAATAAGCTTGTATGGACAGAAACAATTGGT
Found at i:2380 original size:141 final size:143
Alignment explanation
Indices: 2226--2515 Score: 363
Period size: 141 Copynumber: 2.0 Consensus size: 143
2216 AAACAATTGG
* *
2226 TTTATCACAAAACAAAAGGTCATAACT-ATTTGAAATAAATAATTGTTCAAATATTTAGAACTAT
1 TTTATCACAAAACAAAAGGTCATAA-TGATTTGAAATAAATAATTGTTCAAATAATCAGAACTAT
* * * *
2290 TCGAACATGTTTAAAAAACAAATTTA-TTTTTTAAAT-TTTTACTTATTAAATTTTGGAATATTA
65 TCAAACATGTTTAAAAAACAAATTTATTTTTTTAAATCTCTTACTCATTAAATTTTAGAATATTA
*
2353 ATTAATT-TAATTAT
130 ATAAATTATAA-TAT
* * **
2367 TTTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAATAATCATCACTATT
1 TTTATCACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAATCAGAACTATT
* * ** ** *
2432 TAAACTTGTTTAGTAAACGGATTTATTTTTTTAAATCTCTTACTCATTAATTTTTAGAATATTAA
66 CAAACATGTTTAAAAAACAAATTTATTTTTTTAAATCTCTTACTCATTAAATTTTAGAATATTAA
2497 TAAATTAGTAATAT
131 TAAATTA-TAATAT
2511 TTTAT
1 TTTAT
2516 TTTGAATAAG
Statistics
Matches: 126, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
140 1 0.01
141 75 0.60
142 10 0.08
143 29 0.23
144 8 0.06
145 3 0.02
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (143 bp):
TTTATCACAAAACAAAAGGTCATAATGATTTGAAATAAATAATTGTTCAAATAATCAGAACTATT
CAAACATGTTTAAAAAACAAATTTATTTTTTTAAATCTCTTACTCATTAAATTTTAGAATATTAA
TAAATTATAATAT
Found at i:3835 original size:354 final size:355
Alignment explanation
Indices: 3293--3942 Score: 807
Period size: 354 Copynumber: 1.8 Consensus size: 355
3283 TTTAAAATTT
** *
3293 TTATTAATTTTTGAAATATTAATAGATTAGTATTATTTTATTTCAAACAACCTTATATGAACAAA
1 TTATTAATTTCAGAAATATTAATAGATTAGTATTATTTTATTTCAAAAAACCTTATATGAACAAA
* *
3358 AACATTAGTTTTATGAAAAAAAAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAGTC
66 AACATTAGTTTTATG-AAAAAAAAAAGGTCATAACAATTTGAAATAGACAACTGCTCAAATAGTC
* * * **
3423 ATAATTATTTGAATTGGTTAGATATACAGAATTATTTTTTAATTCTCTTATTAATTTTTGAAATT
130 ATAACTATTTGAATTGGTTAGATAAACAGAATTATTTTTAAATTCTCTTATTAATTTTTGAAAGA
* * * * **
3488 TTAATAATTTA-TTTTATTTTA-TTCTAAATAAGCTAGTATGAATTGAAAATATTGTTTTATGAC
195 TTAATAAATTAGTATTATTTTATTTC-AAATAAGCTAGTATG-A-TAAAAAAATTGTCATATGAC
* * **
3551 AAAACAAAAAGTTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACTAG
257 AAAACAAAAAGTAAGAACAATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACTAG
3616 TTCGGCAAACAATTTTATTTTTTAAATCTCTTAG
322 TTCGGCAAACAATTTTATTTTTTAAATCTCTTAG
* * * * * *
3650 TTATTAATTTCAG-AATATTATTAGATTAGTTTTATTTTATTTGAAATAAAGCTTGTATGAATAG
1 TTATTAATTTCAGAAATATTAATAGATTAGTATTATTTTATTTCAAA-AAACCTTATATGAACA-
* * * * *
3714 AAATA-ATT-GTTTTATG-AAAAACAAAGGTTATAACAATTTG-AGTATACAACTGCTCTAATAG
64 AAA-ACATTAGTTTTATGAAAAAAAAAAGGTCATAACAATTTGAAATAGACAACTGCTCAAATAG
* *
3775 TCATAACTATTTGAATTGGTTTTG-TAAACA-TATTA-TTTTAAATCTCTACTTATTAATTTTTG
128 TCATAACTATTTGAATTGG-TTAGATAAACAGAATTATTTTTAAAT-TCT-CTTATTAATTTTTG
* *
3837 AAAGATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATGATAAAAAAATTGTCATATG
190 AAAGATTAATAAATTAGTATTATTTTATTTCAAATAAGCTAGTATGATAAAAAAATTGTCATATG
* *
3902 ACCAAACAAAAGGTAAGAACAATTTGAAATAGATAATTATT
255 ACAAAACAAAAAGTAAGAACAATTTGAAATAGATAATTATT
3943 GAAATGGCCA
Statistics
Matches: 248, Mismatches: 37, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
352 7 0.03
353 56 0.23
354 67 0.27
355 47 0.19
356 33 0.13
357 31 0.12
358 6 0.02
359 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (355 bp):
TTATTAATTTCAGAAATATTAATAGATTAGTATTATTTTATTTCAAAAAACCTTATATGAACAAA
AACATTAGTTTTATGAAAAAAAAAAGGTCATAACAATTTGAAATAGACAACTGCTCAAATAGTCA
TAACTATTTGAATTGGTTAGATAAACAGAATTATTTTTAAATTCTCTTATTAATTTTTGAAAGAT
TAATAAATTAGTATTATTTTATTTCAAATAAGCTAGTATGATAAAAAAATTGTCATATGACAAAA
CAAAAAGTAAGAACAATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACTAGTTCG
GCAAACAATTTTATTTTTTAAATCTCTTAG
Found at i:3979 original size:175 final size:178
Alignment explanation
Indices: 3293--3996 Score: 644
Period size: 176 Copynumber: 4.0 Consensus size: 178
3283 TTTAAAATTT
* * * *
3293 TTATTAATTTTTGAAATATTAATAGATTAGTATTATTTTATTTCAAACAACCTTATATG-A-ACA
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATACA
* * * *
3356 AAAACATTAGTTTTATGAAAAAAAAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAG
66 AAAA-ATT-GTTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGACAATTATTCAAATAG
* * * * * * * *
3421 TCATAATTATTTGAATTGGTTAGATATACAGAATTATTTTTTAAT-TCT-C
129 TCATAACTATTTGAACTGATTTGGTAAACA-TATTATTTTTAAATCTCTAC
* * * * **
3470 TTATTAATTTTTGAAATTTTAATAATTTA-TTTTATTTTA-TTCTAAATAAGCTAGTATGAATTG
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-AAATAAGCTTGTATGAATAC
* * ** * *
3533 AAAATATTGTTTTATGACAAAACAAAAAGTTATAATGATTTGAAATAGATAATTATTCATATAGT
65 AAAAAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGACAATTATTCAAATAGT
** * * * *
3598 TTTAACTATTTGAACT-AGTTCGGCAAACAATTTTATTTTTTAAATCTCTTAG
130 CATAACTATTTGAACTGA-TTTGGTAAAC-ATATTA-TTTTTAAATCTC-TAC
** * * * * *
3650 TTATTAATTTCAG-AATATTATTAGATTAGTTTTATTTTATTTGAAATAAAGCTTGTATGAATAG
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAAT-AAGCTTGTATGAATAC
* * * * ** *
3714 AAATAATTGTTTTATGA-AAAAC-AAAGGTTATAACAATTTG-AGTATACAACTGCTCTAATAGT
65 AAAAAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGACAATTATTCAAATAGT
* * *
3776 CATAACTATTTGAATTGGTTTTGTAAACATATTA-TTTTAAATCTCTAC
130 CATAACTATTTGAACTGATTTGGTAAACATATTATTTTTAAATCTCTAC
* *
3824 TTATTAATTTTTGAAAGATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTGTATG-ATA-A
1 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATACA
** * * * * * * *
3887 AAAAATTGTCATATGACCAAACAAAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGCC
66 AAAAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGACAATTATTCAAATAGTC
*
3952 ATAATTATTTGAACTGATTTGGTAAACATATTCACTTTTTAAATC
131 ATAACTATTTGAACTGATTTGGTAAACATATT-A-TTTTTAAATC
3997 ACTTATTTGA
Statistics
Matches: 415, Mismatches: 92, Indels: 39
0.76 0.17 0.07
Matches are distributed among these distances:
172 14 0.03
173 7 0.02
174 40 0.10
175 83 0.20
176 90 0.22
177 44 0.11
178 49 0.12
179 27 0.07
180 30 0.07
181 31 0.07
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (178 bp):
TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATACA
AAAAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAATAGACAATTATTCAAATAGTC
ATAACTATTTGAACTGATTTGGTAAACATATTATTTTTAAATCTCTAC
Found at i:3993 original size:353 final size:356
Alignment explanation
Indices: 3293--4001 Score: 787
Period size: 353 Copynumber: 2.0 Consensus size: 356
3283 TTTAAAATTT
** *
3293 TTATTAATTTTTGAAATATTAATAGATTAGTATTATTTTATTTCAAACAACCTTATATGAACAAA
1 TTATTAATTTCAGAAATATTAATAGATTAGTATTATTTTATTTCAAAAAACCTTATATGAACAAA
* *
3358 AACATTAGTTTTATGAAAAAAAAAAAGGTCATAACAATTTGAAATAGACAATTGTTCAAATAGTC
66 AACATTAGTTTTATG-AAAAAAAAAAGGTCATAACAATTTGAAATAGACAACTGCTCAAATAGTC
* * * **
3423 ATAATTATTTGAATTGGTTAGATATACAGAATTATTTTTTAATTCTCTTATTAATTTTTGAAATT
130 ATAACTATTTGAATTGGTTAGATAAACAGAATTATTTTTAAATTCTCTTATTAATTTTTGAAAGA
* * * * **
3488 TTAATAATTTATTTTATTTTATTCTAAATAAGCTAGTATGAATTGAAAATATTGTTTTATGACAA
195 TTAATAAATTATATTATTTTATTCTAAATAAGCTAGTATGAATTAAAAAAATTGTCATATGACAA
* * ** * ***
3553 AACAAAAAGTTATAATGATTTGAAATAGATAATTATTCATATAGTTTTAACTATTTGAACTAGTT
260 AACAAAAAGTAAGAACAATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTAGTT
* * *
3618 CGGCAAACAATTTTATTTTTTAAATCTCTTAG
325 CGGCAAACAATTTCACTTTTTAAATCACTTAG
* * * * * *
3650 TTATTAATTTCAG-AATATTATTAGATTAGTTTTATTTTATTTGAAATAAAGCTTGTATGAATAG
1 TTATTAATTTCAGAAATATTAATAGATTAGTATTATTTTATTTCAAA-AAACCTTATATGAACA-
* * * * *
3714 AAATA-ATT-GTTTTATG-AAAAACAAAGGTTATAACAATTTG-AGTATACAACTGCTCTAATAG
64 AAA-ACATTAGTTTTATGAAAAAAAAAAGGTCATAACAATTTGAAATAGACAACTGCTCAAATAG
* *
3775 TCATAACTATTTGAATTGGTTTTG-TAAACA-TATTA-TTTTAAATCTCTACTTATTAATTTTTG
128 TCATAACTATTTGAATTGG-TTAGATAAACAGAATTATTTTTAAAT-TCT-CTTATTAATTTTTG
* *
3837 AAAGATTAATAAATTAGTATTATTTTATT-TCGAATAAGCTTGTATG-A-TAAAAAAATTGTCAT
190 AAAGATTAATAAATTA-TATTATTTTATTCT-AAATAAGCTAGTATGAATTAAAAAAATTGTCAT
* * * * *
3899 ATGACCAAACAAAAGGTAAGAACAATTTGAAATAGATAATTATTGAAATGGCCATAATTATTTGA
253 ATGACAAAACAAAAAGTAAGAACAATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGA
* *
3964 ACT-GATTTGGTAAAC-ATATTCACTTTTTAAATCACTTA
318 ACTAG-TTCGGCAAACAAT-TTCACTTTTTAAATCACTTA
4002 TTTGAATTTG
Statistics
Matches: 293, Mismatches: 49, Indels: 24
0.80 0.13 0.07
Matches are distributed among these distances:
352 10 0.03
353 98 0.33
354 68 0.23
355 49 0.17
356 30 0.10
357 31 0.11
358 6 0.02
359 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.42
Consensus pattern (356 bp):
TTATTAATTTCAGAAATATTAATAGATTAGTATTATTTTATTTCAAAAAACCTTATATGAACAAA
AACATTAGTTTTATGAAAAAAAAAAGGTCATAACAATTTGAAATAGACAACTGCTCAAATAGTCA
TAACTATTTGAATTGGTTAGATAAACAGAATTATTTTTAAATTCTCTTATTAATTTTTGAAAGAT
TAATAAATTATATTATTTTATTCTAAATAAGCTAGTATGAATTAAAAAAATTGTCATATGACAAA
ACAAAAAGTAAGAACAATTTGAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTAGTTC
GGCAAACAATTTCACTTTTTAAATCACTTAG
Found at i:4004 original size:43 final size:44
Alignment explanation
Indices: 3956--4040 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 44
3946 ATGGCCATAA
*
3956 TTATTTGAA-CTGATTTGGTAAACATATTCA-CTTTTTAAATCAC
1 TTATTTGAATCTG-TTTGGTAAACAAATTCATCTTTTTAAATCAC
* * *
3999 TTATTTGAATTTGTTTGGTAAACAAATTTATTTTTTTAAATC
1 TTATTTGAATCTGTTTGGTAAACAAATTCATCTTTTTAAATC
4041 TCTTTCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 24 0.67
44 12 0.33
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.49
Consensus pattern (44 bp):
TTATTTGAATCTGTTTGGTAAACAAATTCATCTTTTTAAATCAC
Found at i:4459 original size:14 final size:16
Alignment explanation
Indices: 4442--4473 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
4432 TTATTGATTA
4442 AATATT-AATT-AATT
1 AATATTAAATTGAATT
4456 AATATTAAATTGAATT
1 AATATTAAATTGAATT
4472 AA
1 AA
4474 CAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.38
15 4 0.25
16 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
AATATTAAATTGAATT
Found at i:4666 original size:16 final size:17
Alignment explanation
Indices: 4645--4679 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
4635 GTTAATAATT
4645 ATTTAATT-ATTAATAA
1 ATTTAATTAATTAATAA
4661 ATTTAATTAATTAATAA
1 ATTTAATTAATTAATAA
4678 AT
1 AT
4680 AAATCATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTTAATTAATTAATAA
Found at i:5175 original size:16 final size:16
Alignment explanation
Indices: 5154--5193 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
5144 TATATAATCT
*
5154 TATATAAT-CTAATTAA
1 TATATAATAATAA-TAA
5170 TATATAATAATAATAA
1 TATATAATAATAATAA
5186 TATATAAT
1 TATATAAT
5194 TTGAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
TATATAATAATAATAA
Found at i:6035 original size:17 final size:16
Alignment explanation
Indices: 5988--6103 Score: 54
Period size: 17 Copynumber: 7.4 Consensus size: 16
5978 TTAATTATTT
5988 TATATATATT-TATT-A
1 TATA-ATATTATATTAA
*
6003 TATAATAATATAATTAA
1 TATAATATTAT-ATTAA
6020 TATAATTATTATATTAA
1 TATAA-TATTATATTAA
* *
6037 -A-ATTGTTATA-T-A
1 TATAATATTATATTAA
6049 TATAATATTA-ATTCAA
1 TATAATATTATATT-AA
6065 -AT-ATATTATAATT-A
1 TATAATATTAT-ATTAA
* *
6079 TAATATTATTATCAATAA
1 T-ATAATATTAT-ATTAA
6097 TATAATA
1 TATAATA
6104 AACAATATAA
Statistics
Matches: 76, Mismatches: 10, Indels: 28
0.67 0.09 0.25
Matches are distributed among these distances:
12 1 0.01
13 3 0.04
14 23 0.30
15 8 0.11
16 10 0.13
17 24 0.32
18 7 0.09
ACGTcount: A:0.49, C:0.02, G:0.01, T:0.48
Consensus pattern (16 bp):
TATAATATTATATTAA
Found at i:6040 original size:14 final size:14
Alignment explanation
Indices: 6023--6090 Score: 50
Period size: 14 Copynumber: 4.6 Consensus size: 14
6013 TAATTAATAT
6023 AATTATTATATTAA
1 AATTATTATATTAA
* *
6037 AATTGTTATATATAT
1 AATTATTATAT-TAA
*
6052 AA-TATTA-ATTCA
1 AATTATTATATTAA
6064 AATATATTATAATTATA
1 AAT-TATTAT-ATTA-A
6081 ATATTATTAT
1 A-ATTATTAT
6091 CAATAATATA
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
12 3 0.07
13 2 0.05
14 19 0.46
15 4 0.10
16 3 0.07
17 8 0.20
18 2 0.05
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (14 bp):
AATTATTATATTAA
Found at i:6057 original size:28 final size:28
Alignment explanation
Indices: 5998--6087 Score: 89
Period size: 28 Copynumber: 3.2 Consensus size: 28
5988 TATATATATT
*
5998 TATTATA-TAATAATATAAT-TAATATAA
1 TATTATATTAA-AATATATTATAATATAA
*
6025 TTATTATATTAAAAT-TGTTATATATATAA
1 -TATTATATTAAAATATATTATA-ATATAA
*
6054 TATTA-ATTCAAATATATTATAATTATAA
1 TATTATATTAAAATATATTATAA-TATAA
6082 TATTAT
1 TATTAT
6088 TATCAATAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 11
0.78 0.06 0.16
Matches are distributed among these distances:
27 10 0.19
28 33 0.63
29 9 0.17
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (28 bp):
TATTATATTAAAATATATTATAATATAA
Found at i:6095 original size:28 final size:29
Alignment explanation
Indices: 6049--6104 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
6039 TTGTTATATA
*
6049 TATAATATTAATTCAAAT-ATATTATAAT
1 TATAATATTAATTCAAATAATATAATAAT
*
6077 TATAATATTATTATC-AATAATATAATAA
1 TATAATATTAAT-TCAAATAATATAATAA
6105 ACAATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 14 0.58
29 10 0.42
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (29 bp):
TATAATATTAATTCAAATAATATAATAAT
Found at i:6457 original size:18 final size:18
Alignment explanation
Indices: 6417--6458 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6407 TTAATTTTAA
* *
6417 ATAAATTATATACTAATT
1 ATAAATTATAAACAAATT
6435 ATAAATATATAAACAAATT
1 ATAAAT-TATAAACAAATT
6454 -TAAAT
1 ATAAAT
6459 CTTATTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAAATTATAAACAAATT
Found at i:6509 original size:18 final size:17
Alignment explanation
Indices: 6488--6521 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
6478 TGAATATATT
*
6488 AATATATAATTAATTATA
1 AATAAATAATT-ATTATA
6506 AATAAATAATTATTAT
1 AATAAATAATTATTAT
6522 TTAAAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAAATAATTATTATA
Found at i:6915 original size:15 final size:15
Alignment explanation
Indices: 6895--6944 Score: 57
Period size: 15 Copynumber: 3.3 Consensus size: 15
6885 TGAATTGTAA
*
6895 TATAATATTTTAT-AT
1 TATAAT-TTTAATAAT
*
6910 TATAATTATAATAAT
1 TATAATTTTAATAAT
*
6925 TATAATTTAAATAAT
1 TATAATTTTAATAAT
6940 TATAA
1 TATAA
6945 ATATATTATA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 4 0.13
15 26 0.87
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAATTTTAATAAT
Found at i:6923 original size:24 final size:25
Alignment explanation
Indices: 6887--6976 Score: 89
Period size: 24 Copynumber: 3.6 Consensus size: 25
6877 AATTTATATG
*
6887 AATTGTAATATAATATTTTATATTAT
1 AATTATAATAT-ATATTTTATATTAT
*
6913 AATTATAATAATTATAATTTA-A--AT
1 AATTATAAT-A-TATATTTTATATTAT
*
6937 AATTATAA-ATATATTATATATTAT
1 AATTATAATATATATTTTATATTAT
6961 AATTAATAATATATAT
1 AATT-ATAATATATAT
6977 AATTTGTTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 14
0.75 0.06 0.20
Matches are distributed among these distances:
21 7 0.13
22 2 0.04
24 16 0.30
25 4 0.08
26 15 0.28
27 8 0.15
28 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
AATTATAATATATATTTTATATTAT
Found at i:6925 original size:9 final size:9
Alignment explanation
Indices: 6911--6963 Score: 53
Period size: 9 Copynumber: 6.2 Consensus size: 9
6901 ATTTTATATT
6911 ATAATTATA
1 ATAATTATA
6920 ATAATTATA
1 ATAATTATA
6929 AT--TTA-A
1 ATAATTATA
6935 ATAATTATAA
1 ATAATTAT-A
6945 ATATATTAT-
1 ATA-ATTATA
6954 AT-ATTATA
1 ATAATTATA
6962 AT
1 AT
6964 TAATAATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
6 3 0.08
7 8 0.21
8 5 0.13
9 13 0.34
10 4 0.11
11 5 0.13
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
ATAATTATA
Found at i:7352 original size:17 final size:16
Alignment explanation
Indices: 7332--7375 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
7322 ATTTATAGTA
7332 TATTAATTAACGATTAT
1 TATTAATTAA-GATTAT
*
7349 TATTAATCTGAGATTAT
1 TATTAAT-TAAGATTAT
7366 TATTAGATTA
1 TATTA-ATTA
7376 TTTCATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (16 bp):
TATTAATTAAGATTAT
Found at i:7831 original size:18 final size:19
Alignment explanation
Indices: 7810--7893 Score: 61
Period size: 18 Copynumber: 4.4 Consensus size: 19
7800 ACAATTAACC
7810 AATTTAATTTAATTATT-T
1 AATTTAATTTAATTATTAT
*
7828 AATTAGTATTTCATAATTATTAT
1 AATT--TAATT--TAATTATTAT
*
7851 AATATAA-TTAATTATTAT
1 AATTTAATTTAATTATTAT
*
7869 AATATAA--T-ATTATATAT
1 AATTTAATTTAATTAT-TAT
7886 AATTTAAT
1 AATTTAAT
7894 AATAAATATT
Statistics
Matches: 55, Mismatches: 4, Indels: 14
0.75 0.05 0.19
Matches are distributed among these distances:
16 5 0.09
17 10 0.18
18 21 0.38
20 5 0.09
21 2 0.04
22 8 0.15
23 4 0.07
ACGTcount: A:0.45, C:0.01, G:0.01, T:0.52
Consensus pattern (19 bp):
AATTTAATTTAATTATTAT
Found at i:7864 original size:32 final size:30
Alignment explanation
Indices: 7826--7889 Score: 76
Period size: 32 Copynumber: 2.1 Consensus size: 30
7816 ATTTAATTAT
*
7826 TTAATTAGTAT-TTCATAATTATTATAATATAA
1 TTAATTAGTATAAT-ATAA-TATTAT-ATATAA
*
7858 TTAATTATTATAATATAATATTATATATAA
1 TTAATTAGTATAATATAATATTATATATAA
7888 TT
1 TT
7890 TAATAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 8 0.28
31 6 0.21
32 14 0.48
33 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
TTAATTAGTATAATATAATATTATATATAA
Found at i:7923 original size:24 final size:24
Alignment explanation
Indices: 7867--7917 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 24
7857 ATTAATTATT
*
7867 ATAATATAATATTATATATAATTTA
1 ATAATA-AATATTATATAGAATTTA
7892 ATAATAAATATTATATAGATATTTA
1 ATAATAAATATTATATAGA-ATTTA
7917 A
1 A
7918 ATTAAAGTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (24 bp):
ATAATAAATATTATATAGAATTTA
Found at i:7956 original size:28 final size:30
Alignment explanation
Indices: 7920--8005 Score: 83
Period size: 29 Copynumber: 3.0 Consensus size: 30
7910 ATATTTAAAT
*
7920 TAAAGTTATAA-TTAT-TAAACTATTA-ATA
1 TAAAATTATAATTTATAT-AACTATTATATA
* *
7948 TAAATTTATAATTTATATAATTATTATATA
1 TAAAATTATAATTTATATAACTATTATATA
*
7978 TAATAATTATAATTTA-ATTA-TATTATAT
1 TAA-AATTATAATTTATATAACTATTATAT
8006 TTTATTATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
28 10 0.20
29 19 0.38
30 10 0.20
31 11 0.22
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (30 bp):
TAAAATTATAATTTATATAACTATTATATA
Found at i:7999 original size:35 final size:35
Alignment explanation
Indices: 7810--8000 Score: 109
Period size: 35 Copynumber: 5.5 Consensus size: 35
7800 ACAATTAACC
* * *
7810 AATT-TAATTTAATTATTTAATTAGTATTTCATAAT
1 AATTATAATTTAATTATATAATTATTATAT-ATAAT
* * *
7845 TATTATAATATAATTA-ATTATTA-TA-ATATAAT
1 AATTATAATTTAATTATATAATTATTATATATAAT
* *
7877 ATTATATATAATTTAA-TA-ATAAATATTATATA-GAT
1 A--AT-TATAATTTAATTATATAATTATTATATATAAT
* * * *
7912 ATTTA-AATTAAAGT-TATAATTATTA-A-ACTATT
1 AATTATAATTTAATTATATAATTATTATATA-TAAT
7944 AA-TATAAATTTATAATTTATATAATTATTATATATAAT
1 AATTAT-AA-TT-TAA-TTATATAATTATTATATATAAT
7982 AATTATAATTTAATTATAT
1 AATTATAATTTAATTATAT
8001 TATATTTTAT
Statistics
Matches: 118, Mismatches: 19, Indels: 38
0.67 0.11 0.22
Matches are distributed among these distances:
30 1 0.01
31 9 0.08
32 19 0.16
33 4 0.03
34 13 0.11
35 30 0.25
36 17 0.14
37 13 0.11
38 8 0.07
39 4 0.03
ACGTcount: A:0.48, C:0.01, G:0.02, T:0.50
Consensus pattern (35 bp):
AATTATAATTTAATTATATAATTATTATATATAAT
Found at i:8611 original size:14 final size:14
Alignment explanation
Indices: 8594--8647 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
8584 ATAAGTTTTA
8594 AATTATTTTAATAT
1 AATTATTTTAATAT
* *
8608 AATTATTATATTAT
1 AATTATTTTAATAT
8622 AATT-TTTT--TAT
1 AATTATTTTAATAT
8633 AATATATTATTAATA
1 AAT-TATT-TTAATA
8648 GTATTATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
11 6 0.19
12 1 0.03
13 5 0.16
14 18 0.56
16 2 0.06
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
AATTATTTTAATAT
Found at i:8638 original size:30 final size:31
Alignment explanation
Indices: 8596--8688 Score: 86
Period size: 30 Copynumber: 3.0 Consensus size: 31
8586 AAGTTTTAAA
8596 TTATT-TTAATATAATTATTATATTATAATT
1 TTATTATTAATATAATTATTATATTATAATT
* * *
8626 TTTTTA-TAATATATTATTAATAGTATTATAA-A
1 TTATTATTAATATA--ATTATTA-TATTATAATT
*
8658 TTATTATTAACA-AATTATTAATATTATAATT
1 TTATTATTAATATAATTATT-ATATTATAATT
8689 ATAAATTTAT
Statistics
Matches: 49, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
30 24 0.49
31 1 0.02
32 12 0.24
33 12 0.24
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (31 bp):
TTATTATTAATATAATTATTATATTATAATT
Found at i:8646 original size:11 final size:11
Alignment explanation
Indices: 8632--8681 Score: 57
Period size: 11 Copynumber: 4.5 Consensus size: 11
8622 AATTTTTTTA
8632 TAATATATTAT
1 TAATATATTAT
8643 TAATAGTATTAT
1 TAATA-TATTAT
*
8655 AAAT-TATTAT
1 TAATATATTAT
* *
8665 TAACAAATTAT
1 TAATATATTAT
8676 TAATAT
1 TAATAT
8682 TATAATTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
10 8 0.26
11 14 0.45
12 9 0.29
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (11 bp):
TAATATATTAT
Found at i:8831 original size:6 final size:6
Alignment explanation
Indices: 8812--8875 Score: 71
Period size: 6 Copynumber: 10.8 Consensus size: 6
8802 TGTTATAAAT
* *
8812 TATTAA AATT-A TATTAA TATTAA TATTAA TA-TAA TTTTAA GTATTAA
1 TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA TATTAA -TATTAA
8859 TATTAA TTATTAA -ATTA
1 TATTAA -TATTAA TATTA
8876 GTTATGATTA
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
5 12 0.24
6 27 0.54
7 11 0.22
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (6 bp):
TATTAA
Found at i:8832 original size:17 final size:17
Alignment explanation
Indices: 8812--8872 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
8802 TGTTATAAAT
8812 TATTAAAATTATATTAA
1 TATTAAAATTATATTAA
*
8829 TATTAATATTA-ATATAA
1 TATTAAAATTATAT-TAA
* *
8846 TTTTAAGTATTAATATTAA
1 TATTAA-AATT-ATATTAA
8865 TTATTAAA
1 -TATTAAA
8873 TTAGTTATGA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
16 2 0.06
17 18 0.51
18 4 0.11
19 4 0.11
20 7 0.20
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (17 bp):
TATTAAAATTATATTAA
Found at i:8875 original size:18 final size:19
Alignment explanation
Indices: 8809--8875 Score: 81
Period size: 18 Copynumber: 3.7 Consensus size: 19
8799 AATTGTTATA
*
8809 AATTATTAAAATT-ATATT
1 AATTATTAATATTAATATT
8827 AA-TATTAATATTAATA-T
1 AATTATTAATATTAATATT
8844 AATT-TTAAGTATTAATATT
1 AATTATTAA-TATTAATATT
8863 AATTATTAA-ATTA
1 AATTATTAATATTA
8876 GTTATGATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
17 16 0.37
18 18 0.42
19 5 0.12
20 4 0.09
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (19 bp):
AATTATTAATATTAATATT
Found at i:8880 original size:12 final size:13
Alignment explanation
Indices: 8781--8871 Score: 67
Period size: 12 Copynumber: 7.5 Consensus size: 13
8771 AAATATGTAC
8781 ATATATAATTA-TA
1 ATAT-TAATTATTA
*
8794 ATATTAATTGTT-
1 ATATTAATTATTA
8806 ATA--AATTATTA
1 ATATTAATTATTA
*
8817 AAATT-A-TATTA
1 ATATTAATTATTA
8828 ATATTAA-TATTA
1 ATATTAATTATTA
8840 ATA-TAATT-TTA
1 ATATTAATTATTA
8851 AGTATTAA-TATTA
1 A-TATTAATTATTA
8864 ATTATTAA
1 A-TATTAA
8872 ATTAGTTATG
Statistics
Matches: 64, Mismatches: 5, Indels: 18
0.74 0.06 0.21
Matches are distributed among these distances:
10 6 0.09
11 18 0.28
12 22 0.34
13 18 0.28
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.49
Consensus pattern (13 bp):
ATATTAATTATTA
Found at i:9526 original size:19 final size:20
Alignment explanation
Indices: 9504--9546 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
9494 TATACTATCA
9504 AATAGTTAAT-ATTAATT-AT
1 AATA-TTAATAATTAATTAAT
9523 AATATTAATAATTAATTAAT
1 AATATTAATAATTAATTAAT
9543 AATA
1 AATA
9547 CTTATTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 5 0.23
19 11 0.50
20 6 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (20 bp):
AATATTAATAATTAATTAAT
Found at i:9605 original size:14 final size:13
Alignment explanation
Indices: 9583--9645 Score: 53
Period size: 13 Copynumber: 5.0 Consensus size: 13
9573 TATAAAAATG
*
9583 TATTTATTATTAA
1 TATTTATTATAAA
9596 TATTTGATTATAAA
1 TATTT-ATTATAAA
* *
9610 TATTTATAATAAT
1 TATTTATTATAAA
9623 TA-TTA--ATAAA
1 TATTTATTATAAA
9633 TAATTTA-TATAAA
1 T-ATTTATTATAAA
9646 CAAAAATAAT
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
10 5 0.12
11 1 0.02
12 6 0.14
13 18 0.43
14 12 0.29
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (13 bp):
TATTTATTATAAA
Found at i:9644 original size:13 final size:12
Alignment explanation
Indices: 9569--9645 Score: 50
Period size: 14 Copynumber: 6.0 Consensus size: 12
9559 TAAGTTATAT
*
9569 TATTTATAAAAA
1 TATTTATATAAA
*
9581 TGTATTTATTATTAA
1 --TATTTA-TATAAA
9596 TATTTGATTATAAA
1 TATTT-A-TATAAA
*
9610 TATTTATAATAAT
1 TATTTAT-ATAAA
9623 TA-TTA-ATAAA
1 TATTTATATAAA
9633 TAATTTATATAAA
1 T-ATTTATATAAA
9646 CAAAAATAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
10 5 0.10
11 1 0.02
12 7 0.13
13 17 0.33
14 18 0.35
15 4 0.08
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.49
Consensus pattern (12 bp):
TATTTATATAAA
Found at i:10249 original size:28 final size:29
Alignment explanation
Indices: 10199--10253 Score: 78
Period size: 28 Copynumber: 1.9 Consensus size: 29
10189 ATTTAGGATT
10199 TATTTGAAATTATTTATAAATATAAATAA
1 TATTTGAAATTATTTATAAATATAAATAA
*
10228 TATTT-AATTTATATTAT-AATATAAAT
1 TATTTGAAATTAT-TTATAAATATAAAT
10254 TATAATAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (29 bp):
TATTTGAAATTATTTATAAATATAAATAA
Found at i:10251 original size:24 final size:24
Alignment explanation
Indices: 10210--10259 Score: 59
Period size: 24 Copynumber: 2.1 Consensus size: 24
10200 ATTTGAAATT
10210 ATTTATAAATATAAATAATATT-TA
1 ATTTATAAATATAAATAA-ATTATA
*
10234 ATTTAT-ATTATAATATAAATTATA
1 ATTTATAAATATAA-ATAAATTATA
10258 AT
1 AT
10260 AATAATTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
23 9 0.39
24 14 0.61
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTTATAAATATAAATAAATTATA
Found at i:10492 original size:17 final size:17
Alignment explanation
Indices: 10472--10521 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
10462 ATTATAAACT
*
10472 TAATTATACTATATAAA
1 TAATTATAATATATAAA
* *
10489 TAATTATATTATAATTAA
1 TAATTATAATAT-ATAAA
10507 TATATTATAATATAT
1 TA-ATTATAATATAT
10522 TTTTTCAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 11 0.39
18 8 0.29
19 9 0.32
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATTATAATATATAAA
Found at i:10512 original size:14 final size:15
Alignment explanation
Indices: 10461--10517 Score: 62
Period size: 14 Copynumber: 3.6 Consensus size: 15
10451 TAAATATAAT
10461 TATTATAAACTTAATTA
1 TATTAT-AA-TTAATTA
*
10478 TACTATATAAATAATTA
1 TA-T-TATAATTAATTA
10495 TATTATAATTAA-TA
1 TATTATAATTAATTA
10509 TATTATAAT
1 TATTATAAT
10518 ATATTTTTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
14 11 0.31
15 8 0.22
16 1 0.03
17 10 0.28
18 3 0.08
19 3 0.08
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (15 bp):
TATTATAATTAATTA
Found at i:10582 original size:28 final size:28
Alignment explanation
Indices: 10550--10621 Score: 76
Period size: 28 Copynumber: 2.5 Consensus size: 28
10540 ATTGCAAAAT
*
10550 AATTATAATATTAATTA-TTTATATTATA
1 AATTATAATATTAATCATTTTATATT-TA
*
10578 AATTATAGT-TTAATCATTTTATATTTA
1 AATTATAATATTAATCATTTTATATTTA
*
10605 ATATTATTAATAATAAT
1 A-ATTA-TAATATTAAT
10622 AATGAATGCT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
27 9 0.25
28 20 0.56
29 3 0.08
30 4 0.11
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (28 bp):
AATTATAATATTAATCATTTTATATTTA
Found at i:11361 original size:21 final size:22
Alignment explanation
Indices: 11318--11364 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 22
11308 ATTTATTAGT
11318 TAATTTAACTAATAATAAGATTA
1 TAATTTAAC-AATAATAAGATTA
11341 TAATTTAA-AATATATAA-ATTA
1 TAATTTAACAATA-ATAAGATTA
11362 TAA
1 TAA
11365 AATTTTAATC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 11 0.48
22 4 0.17
23 8 0.35
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (22 bp):
TAATTTAACAATAATAAGATTA
Found at i:11615 original size:31 final size:34
Alignment explanation
Indices: 11579--11654 Score: 88
Period size: 31 Copynumber: 2.4 Consensus size: 34
11569 ATTATGTAAT
11579 ACAATTATATTAT-ATACTAA-TT-TATAAACTA
1 ACAATTATATTATAATACTAAGTTATATAAACTA
* * * *
11610 TCAATTATATAATAATATTAAGTTATATAAATTA
1 ACAATTATATTATAATACTAAGTTATATAAACTA
11644 AC-ATTATATTA
1 ACAATTATATTA
11655 ATTATTTTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
31 11 0.31
32 6 0.17
33 10 0.28
34 9 0.25
ACGTcount: A:0.49, C:0.07, G:0.01, T:0.43
Consensus pattern (34 bp):
ACAATTATATTATAATACTAAGTTATATAAACTA
Found at i:11782 original size:19 final size:18
Alignment explanation
Indices: 11741--11783 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
11731 TTAATTTTAA
*
11741 ATAAATTATATATTAATT
1 ATAAATTATATATAAATT
11759 ATAAATATATATAATAAATT
1 ATAAAT-TATAT-ATAAATT
11779 -TAAAT
1 ATAAAT
11784 CTTATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 6 0.27
19 10 0.45
20 6 0.27
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAAATTATATATAAATT
Found at i:11846 original size:21 final size:21
Alignment explanation
Indices: 11815--11855 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
11805 TGAATATATT
11815 AATATATAATTAATTATAAATA
1 AATATATAATTAATTA-AAATA
*
11837 AATA-ATAATTATTTAAAAT
1 AATATATAATTAATTAAAAT
11856 TATTTTGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 10 0.56
22 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATATATAATTAATTAAAATA
Found at i:12457 original size:9 final size:9
Alignment explanation
Indices: 12445--12478 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
12435 AGTATAATTA
12445 ATTATAAAT
1 ATTATAAAT
*
12454 ATTATTAAT
1 ATTATAAAT
*
12463 ATTATTAAT
1 ATTATAAAT
12472 ATTATAA
1 ATTATAA
12479 TTTAAGTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (9 bp):
ATTATAAAT
Found at i:13316 original size:21 final size:20
Alignment explanation
Indices: 13251--13316 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 20
13241 TATTAATAAA
13251 TAATTATTAATATAATTAATGT
1 TAATTATTAATATAATTAA--T
* * *
13273 TAATTATTATTATATTTGTAT
1 TAATTATTAATATAATT-AAT
*
13294 TAATTATTAAAATAATTACAT
1 TAATTATTAATATAATTA-AT
13315 TA
1 TA
13317 TAGATTATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
21 19 0.54
22 15 0.43
23 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.03, T:0.52
Consensus pattern (20 bp):
TAATTATTAATATAATTAAT
Found at i:14472 original size:177 final size:179
Alignment explanation
Indices: 14273--14660 Score: 415
Period size: 177 Copynumber: 2.2 Consensus size: 179
14263 TAAAATTTTT
* ** * *
14273 TACTTATTAATTGTCAAAATATTAACAAATTAGTATTATTTTAATCCAAAT-AAGCTTGTATAAA
1 TACTTATTAATTTTTGAAATATTAACAAATTAGTATTACTTTAATCCAAATGAA-CTTATATAAA
* * * * * * *
14337 TAGAAACAATTGTTTTATTATAGAACAAAAAGTCATAACGATTCGAAATAAATAATTACTCAAAT
65 CAAAAACAATTGTTTTATGACAAAACAAAAAGTAATAACGATTCGAAATAAATAATTACTCAAAC
* * * * *
14402 AGTCATAAATTTTTGAACTACTTTGATACATAGATTTATTTTTT-AA-ATC
130 AGT-ATAAATTTTTGAACTACTTAGATAAACAAAATTATTTTTTAAATATC
* * * *
14451 -ACTTATTAATTTTTGAAATATTAATAGATTAGTATTACTTTATTCCAAATGAACTTATATGAAC
1 TACTTATTAATTTTTGAAATATTAACAAATTAGTATTACTTTAATCCAAATGAACTTATATAAAC
* * * * **
14515 AAAAACATTTGTTTTATGACAAAACAAAAAGTAATAATGATTTGAAATATATAATTTTTCAAACA
66 AAAAACAATTGTTTTATGACAAAACAAAAAGTAATAACGATTCGAAATAAATAATTACTCAAACA
* * * ** *
14580 GTGTAATTTTTTGAATTGGTTAGGTAAACAAAATTATTTTTTAAATATC
131 GTATAAATTTTTGAACTACTTAGATAAACAAAATTATTTTTTAAATATC
*
14629 TTATTTATTAATTTTTGAAATATTAACAAATT
1 -TACTTATTAATTTTTGAAATATTAACAAATT
14661 CATTTTATTT
Statistics
Matches: 169, Mismatches: 36, Indels: 8
0.79 0.17 0.04
Matches are distributed among these distances:
176 29 0.17
177 108 0.64
178 5 0.03
180 27 0.16
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (179 bp):
TACTTATTAATTTTTGAAATATTAACAAATTAGTATTACTTTAATCCAAATGAACTTATATAAAC
AAAAACAATTGTTTTATGACAAAACAAAAAGTAATAACGATTCGAAATAAATAATTACTCAAACA
GTATAAATTTTTGAACTACTTAGATAAACAAAATTATTTTTTAAATATC
Found at i:15248 original size:7 final size:7
Alignment explanation
Indices: 15236--15273 Score: 53
Period size: 7 Copynumber: 5.6 Consensus size: 7
15226 TTATCTTTTA
15236 AATTAAT
1 AATTAAT
15243 AATTAAT
1 AATTAAT
15250 AATTAAAT
1 AATT-AAT
15258 AATT--T
1 AATTAAT
15263 AATTAAT
1 AATTAAT
15270 AATT
1 AATT
15274 TCATGATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
5 5 0.18
7 16 0.57
8 7 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
AATTAAT
Found at i:15783 original size:18 final size:19
Alignment explanation
Indices: 15755--15803 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
15745 TTGACCAGTG
*
15755 CAAACAGTTATGACTATTT
1 CAAACAATTATGACTATTT
15774 -AAACAATTAT--CTATTT
1 CAAACAATTATGACTATTT
15790 CAAATC-ATTATGAC
1 CAAA-CAATTATGAC
15804 CTTTTGTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 8
0.74 0.03 0.24
Matches are distributed among these distances:
16 6 0.24
17 8 0.32
18 10 0.40
19 1 0.04
ACGTcount: A:0.41, C:0.16, G:0.06, T:0.37
Consensus pattern (19 bp):
CAAACAATTATGACTATTT
Found at i:15954 original size:180 final size:175
Alignment explanation
Indices: 15457--16030 Score: 496
Period size: 181 Copynumber: 3.2 Consensus size: 175
15447 ATTTTGTCAT
* * * *
15457 AAAACAAATGTTTTTGTTCATATAAGTTTATTTGGAATAAAATAATAT-TAATTTATTAATATTT
1 AAAACAATTGTTTTTGTTCATACAAGCTTA-TTCGAAT-AAATAAT-TCTAATTTATTAATATTT
* * ** *
15521 CAAAAATTAATATGTAAGAGATTTAAAAAATAAATCCGTTTGCC-ATACCAA-TTCAATTAGTTA
63 CAAAAATTAATAAGT-AGAGATTTAAAAAATGAATTTGTTTGCCGA-A-CAAGTTCAAATAGTTA
* * * * * * *
15584 TAACTATTTGACCAAATATTTATTTCAAATTGTTATGACCATTTG-TTTTATC
125 TGACTATTTAAACAATTATCTATTTCAAA-TATTATGACCTTTTGTTTTTA-C
* * * *
15636 ATAAATCAATTGTTTCTGTTCATATAATCTTATTCGAAATAAAGTAATGCTAATTTATTAATATT
1 A-AAA-CAATTGTTTTTGTTCATACAAGCTTATTCG-AATAAA-TAATTCTAATTTATTAATATT
* * * * * * * * *
15701 TTAAAAATTAATAAGTAAAGGATTTAGAAAATGTATCTT-TTGGCTTG-ACCAGTGCAAACAGTT
62 TCAAAAATTAATAAGTAGA-GATTTAAAAAATGAAT-TTGTTTGC-CGAACAAGTTCAAATAGTT
15764 ATGACTATTTAAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTCTTAC
124 ATGACTATTTAAACAATTATCTATTTCAAAT-ATTATGACCTTTTGTTT-TTAC
* * *
15818 AAAACAATTGTTTTTGTTCATACAAGCTTATTCAGATTAACATAATTCTAATTTATTCATATTCC
1 AAAACAATTGTTTTTGTTCATACAAGCTTATTC-GAATAA-ATAATTCTAATTTATTAATATTTC
* * *
15883 AAAAATTAATAAGTGAGAGATTTAAAAAATGAATTTGTTTACCGAACAAGTTCAAATAATTATGG
64 AAAAATTAATAAGT-AGAGATTTAAAAAATGAATTTGTTTGCCGAACAAGTTCAAATAGTTATGA
* * * * * *
15948 CTATTTAAACAATTATCTAGTTGAAATTTCTATAACCTTGTGTATTGTTAT
128 CTATTTAAACAATTATCTATTTCAAATAT-TATGACCTTTTGT-TT-TTAC
* *
15999 AAAATAATT-TTTTCTATTCATACAAGCTTATT
1 AAAACAATTGTTTT-TGTTCATACAAGCTTATT
16031 TCAAATCTGT
Statistics
Matches: 319, Mismatches: 55, Indels: 40
0.77 0.13 0.10
Matches are distributed among these distances:
179 5 0.02
180 149 0.47
181 158 0.50
182 4 0.01
183 3 0.01
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (175 bp):
AAAACAATTGTTTTTGTTCATACAAGCTTATTCGAATAAATAATTCTAATTTATTAATATTTCAA
AAATTAATAAGTAGAGATTTAAAAAATGAATTTGTTTGCCGAACAAGTTCAAATAGTTATGACTA
TTTAAACAATTATCTATTTCAAATATTATGACCTTTTGTTTTTAC
Found at i:16275 original size:255 final size:255
Alignment explanation
Indices: 15820--16285 Score: 578
Period size: 255 Copynumber: 1.8 Consensus size: 255
15810 TTTCTTACAA
* * *
15820 AACAATTGTTTTTGTTCATACAAGCTTATTCAGATTAACATAATTCTAATTTATTCATATTCCAA
1 AACAATTATTTTTGTTCATACAAGCTTATTCAGATTAAAATAATTCTAATTTATTAATATTCCAA
* * * * * **
15885 AAATTAATAAGTGAGAGATTTAAAAAATGAATTTGTTTACCGAACAAGTTCAAATAATTATGGCT
66 AAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACT
* * * *** * * * *
15950 ATTTAAACAATTATCTAGTTGAAATTTCTATAACCTTGTGTATTGTTATAAAATAATTTTTTCTA
131 ATCTAAACAATTATCTAGTTCAAATGTCTATAACCTTGTGTATTACCATAAAACAATTATATCAA
16015 TTCATACAAGCTTATTTCAAATCTGTTTACTGAATAATTTTGAATAGTTATGACTATTGG
196 TTCATACAAGCTTATTTCAAATCTGTTTACTGAATAATTTTGAATAGTTATGACTATTGG
** *
16075 AACAATTATTTTTGTTCATATTAGCTTATTCAGATTAAAATAATAT-TAATTTATTAATATTTCA
1 AACAATTATTTTTGTTCATACAAGCTTATTCAGATTAAAATAAT-TCTAATTTATTAATATTCCA
* * *
16139 ACAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACTGAACAAGTTCAAATAGTAATAAC
65 AAAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAAC
* * * * * *
16204 TATCTGAATAATTATTTATTTCAAATCGT-TATGACCTTTTGT-TTCACCATAAAACAATTATAT
130 TATCTAAACAATTATCTAGTTCAAAT-GTCTATAACCTTGTGTATT-ACCATAAAACAATTATAT
* *
16267 CAATTCATATAGGCTTATT
193 CAATTCATACAAGCTTATT
16286 CGAAATAAAA
Statistics
Matches: 174, Mismatches: 34, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
254 2 0.01
255 170 0.98
256 2 0.01
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.41
Consensus pattern (255 bp):
AACAATTATTTTTGTTCATACAAGCTTATTCAGATTAAAATAATTCTAATTTATTAATATTCCAA
AAATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACT
ATCTAAACAATTATCTAGTTCAAATGTCTATAACCTTGTGTATTACCATAAAACAATTATATCAA
TTCATACAAGCTTATTTCAAATCTGTTTACTGAATAATTTTGAATAGTTATGACTATTGG
Found at i:18341 original size:16 final size:15
Alignment explanation
Indices: 18320--18366 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 15
18310 ATTAATATTT
18320 TTAATATTACTAATAA
1 TTAATATTA-TAATAA
*
18336 TTAATATTATTATAA
1 TTAATATTATAATAA
18351 TATAATACTTATAATA
1 T-TAATA-TTATAATA
18367 TTTTTATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 6 0.22
16 14 0.52
17 7 0.26
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATATTATAATAA
Found at i:18353 original size:11 final size:11
Alignment explanation
Indices: 18337--18380 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
18327 TACTAATAAT
18337 TAATATTATTA
1 TAATATTATTA
18348 TAATATAATACTTA
1 TAATAT--TA-TTA
*
18362 TAATATTTTTA
1 TAATATTATTA
18373 TAATATTA
1 TAATATTA
18381 GTAATTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
11 16 0.57
12 1 0.04
13 2 0.07
14 9 0.32
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (11 bp):
TAATATTATTA
Found at i:18722 original size:19 final size:18
Alignment explanation
Indices: 18698--18747 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
18688 TATTTGAAAT
18698 ATTAATAATTAATATTTTA
1 ATTAATAATTAAT-TTTTA
*
18717 ATTAATAATTTATTTTTA
1 ATTAATAATTAATTTTTA
18735 A-TAA-AA-TAATTTT
1 ATTAATAATTAATTTT
18748 AATATTCGAC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
15 6 0.21
16 2 0.07
17 3 0.10
18 6 0.21
19 12 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATTAATAATTAATTTTTA
Found at i:18725 original size:22 final size:22
Alignment explanation
Indices: 18683--18725 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
18673 TCTCTTACTT
*
18683 ATTAATATTTGAAATATTAATA
1 ATTAATATTTGAAATAATAATA
* *
18705 ATTAATATTTTAATTAATAAT
1 ATTAATATTTGAAATAATAAT
18726 TTATTTTTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
ATTAATATTTGAAATAATAATA
Found at i:19601 original size:23 final size:22
Alignment explanation
Indices: 19575--19634 Score: 54
Period size: 25 Copynumber: 2.7 Consensus size: 22
19565 TAATTATGTT
*
19575 TATTTAATTATATATATATTAAC
1 TATTTAATTATATATAT-TTAAA
*
19598 TATTGTTAAGTATAT-TATTTAAA
1 TA-T-TTAATTATATATATTTAAA
19621 TATTT-ATTA-ATATA
1 TATTTAATTATATATA
19635 AATAATTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 9
0.72 0.07 0.21
Matches are distributed among these distances:
19 2 0.06
20 5 0.16
21 2 0.06
22 1 0.03
23 8 0.26
24 4 0.13
25 9 0.29
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (22 bp):
TATTTAATTATATATATTTAAA
Found at i:19778 original size:20 final size:20
Alignment explanation
Indices: 19749--19786 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
19739 GGTTATGTAT
* *
19749 ATATATTTAAAACTTTATTA
1 ATATACTTAAAAATTTATTA
19769 ATATACTTAAAAATTTAT
1 ATATACTTAAAAATTTAT
19787 ATATTATTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATACTTAAAAATTTATTA
Found at i:19884 original size:13 final size:12
Alignment explanation
Indices: 19848--19905 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 12
19838 TTAATTAATT
19848 TAATA-ATTAT-
1 TAATATATTATA
19858 TAATATATTCATA
1 TAATATATT-ATA
19871 TAATTATATTATA
1 TAA-TATATTATA
*
19884 TAA-AT-TTAAA
1 TAATATATTATA
*
19894 TAGTATATTATA
1 TAATATATTATA
19906 ACTATTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
10 11 0.28
11 7 0.18
12 6 0.15
13 9 0.23
14 6 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (12 bp):
TAATATATTATA
Found at i:19998 original size:15 final size:15
Alignment explanation
Indices: 19978--20020 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
19968 ATTTTTACTA
19978 TAATTAATAATATAT
1 TAATTAATAATATAT
19993 TAATT-ATAAATATAT
1 TAATTAAT-AATATAT
*
20008 T-ATAAATAATATA
1 TAATTAATAATATA
20021 ATTATCTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
TAATTAATAATATAT
Found at i:20141 original size:19 final size:18
Alignment explanation
Indices: 20108--20146 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
20098 TAATTAAGTG
*
20108 TAATAATAAATACTATAT
1 TAATAAGAAATACTATAT
20126 TAATAAGAAGATACTATAT
1 TAATAAGAA-ATACTATAT
20145 TA
1 TA
20147 TAGTATTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.54, C:0.05, G:0.05, T:0.36
Consensus pattern (18 bp):
TAATAAGAAATACTATAT
Found at i:21823 original size:21 final size:21
Alignment explanation
Indices: 21793--21874 Score: 119
Period size: 21 Copynumber: 3.9 Consensus size: 21
21783 AATTAATAAA
21793 TCTTCAAATGAAAATCTTTGAG
1 TCTT-AAATGAAAATCTTTGAG
** *
21815 TGATAAATGAGAATCTTTGAG
1 TCTTAAATGAAAATCTTTGAG
21836 TCTTAAATGAAAATCTTTGAG
1 TCTTAAATGAAAATCTTTGAG
*
21857 TCTTAAATGAGAATCTTT
1 TCTTAAATGAAAATCTTT
21875 AAGAAATTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
21 51 0.96
22 2 0.04
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (21 bp):
TCTTAAATGAAAATCTTTGAG
Found at i:21844 original size:42 final size:43
Alignment explanation
Indices: 21793--21874 Score: 139
Period size: 42 Copynumber: 1.9 Consensus size: 43
21783 AATTAATAAA
*
21793 TCTTCAAATGAAAATCTTTGAGTGATAAATGAGAATCTTTGAG
1 TCTTCAAATGAAAATCTTTGAGTCATAAATGAGAATCTTTGAG
*
21836 TCTT-AAATGAAAATCTTTGAGTCTTAAATGAGAATCTTT
1 TCTTCAAATGAAAATCTTTGAGTCATAAATGAGAATCTTT
21875 AAGAAATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
42 33 0.89
43 4 0.11
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (43 bp):
TCTTCAAATGAAAATCTTTGAGTCATAAATGAGAATCTTTGAG
Found at i:21923 original size:14 final size:13
Alignment explanation
Indices: 21857--21945 Score: 66
Period size: 11 Copynumber: 7.1 Consensus size: 13
21847 AATCTTTGAG
21857 TCTTAAATGAGAA
1 TCTTAAATGAGAA
*
21870 TCTTTAA-GA-AA
1 TCTTAAATGAGAA
*
21881 TTTTGAAATGAGAA
1 TCTT-AAATGAGAA
*
21895 TCTTTAA-GA-AA
1 TCTTAAATGAGAA
21906 TCTTGAAATGAGAA
1 TCTT-AAATGAGAA
21920 TCTT---TGAGAAA
1 TCTTAAATGAG-AA
21931 TCCTTAAATGAGAA
1 T-CTTAAATGAGAA
21945 T
1 T
21946 TTTTGATATG
Statistics
Matches: 59, Mismatches: 6, Indels: 21
0.69 0.07 0.24
Matches are distributed among these distances:
10 4 0.07
11 14 0.24
12 11 0.19
13 12 0.20
14 14 0.24
15 4 0.07
ACGTcount: A:0.43, C:0.08, G:0.16, T:0.34
Consensus pattern (13 bp):
TCTTAAATGAGAA
Found at i:21926 original size:15 final size:15
Alignment explanation
Indices: 21861--21926 Score: 62
Period size: 12 Copynumber: 5.1 Consensus size: 15
21851 TTTGAGTCTT
21861 AAATGAGAATCTTT-
1 AAATGAGAATCTTTG
21875 -AA-GA-AAT-TTTG
1 AAATGAGAATCTTTG
21886 AAATGAGAATCTTT-
1 AAATGAGAATCTTTG
21900 -AA-GA-AATC-TTG
1 AAATGAGAATCTTTG
21911 AAATGAGAATCTTTG
1 AAATGAGAATCTTTG
21926 A
1 A
21927 GAAATCCTTA
Statistics
Matches: 42, Mismatches: 0, Indels: 19
0.69 0.00 0.31
Matches are distributed among these distances:
10 5 0.12
11 7 0.17
12 8 0.19
13 8 0.19
14 7 0.17
15 7 0.17
ACGTcount: A:0.44, C:0.06, G:0.17, T:0.33
Consensus pattern (15 bp):
AAATGAGAATCTTTG
Found at i:21951 original size:25 final size:25
Alignment explanation
Indices: 21819--21945 Score: 137
Period size: 25 Copynumber: 5.4 Consensus size: 25
21809 TTTGAGTGAT
*
21819 AAATGAGAATCTTT--G-AGTCTT-
1 AAATGAGAATCTTTAAGAAATCTTG
* *
21840 AAATGAAAATCTTT--G-AGTCTT-
1 AAATGAGAATCTTTAAGAAATCTTG
*
21861 AAATGAGAATCTTTAAGAAATTTTG
1 AAATGAGAATCTTTAAGAAATCTTG
21886 AAATGAGAATCTTTAAGAAATCTTG
1 AAATGAGAATCTTTAAGAAATCTTG
*
21911 AAATGAGAATCTTTGAGAAATCCTT-
1 AAATGAGAATCTTTAAGAAAT-CTTG
21936 AAATGAGAAT
1 AAATGAGAAT
21946 TTTTGATATG
Statistics
Matches: 95, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
21 33 0.35
23 1 0.01
24 4 0.04
25 54 0.57
26 3 0.03
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.34
Consensus pattern (25 bp):
AAATGAGAATCTTTAAGAAATCTTG
Found at i:22057 original size:43 final size:42
Alignment explanation
Indices: 21976--22059 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 42
21966 AAATTTATTG
* * *
21976 GATGTGAATCTTCAAACTCGAATGAGAAGCTTTGAACTTTTA
1 GATGTGAATCTTAAAACTCGAATGAAAAGCTTTAAACTTTTA
* *
22018 GATGTGAATCTCTAAAATTTGAATGAAAAAGC-TTAAACTTTT
1 GATGTGAATCT-TAAAACTCGAATG-AAAAGCTTTAAACTTTT
22060 TGGATATGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 11 0.31
43 19 0.54
44 5 0.14
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.35
Consensus pattern (42 bp):
GATGTGAATCTTAAAACTCGAATGAAAAGCTTTAAACTTTTA
Found at i:22455 original size:43 final size:42
Alignment explanation
Indices: 22371--22461 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 42
22361 ATGATTGTCA
* * *
22371 AGGAGCCTTTTATTTTTTTAAAGTTGTTGTGCCTCTGTTTAG
1 AGGAGCCATTTATTTTTTTAAAGTTGTTGAGCCTCTATTTAG
*
22413 ATGAGCCATTTATTTTTTTCAAAGTTGTTGAGCC-CTTATTTAG
1 AGGAGCCATTTATTTTTTT-AAAGTTGTTGAGCCTC-TATTTAG
22456 AGGAGC
1 AGGAGC
22462 TTTGTTTACT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 18 0.43
43 24 0.57
ACGTcount: A:0.21, C:0.13, G:0.21, T:0.45
Consensus pattern (42 bp):
AGGAGCCATTTATTTTTTTAAAGTTGTTGAGCCTCTATTTAG
Found at i:23361 original size:5 final size:6
Alignment explanation
Indices: 23339--23371 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
23329 AAATTTTAAA
23339 AAAAATT AAAAAT AAAAAT AAAAAT -AAAAT AAA
1 AAAAA-T AAAAAT AAAAAT AAAAAT AAAAAT AAA
23372 GTTTGGGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 5 0.20
6 15 0.60
7 5 0.20
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAAAT
Found at i:24513 original size:22 final size:21
Alignment explanation
Indices: 24480--24532 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 21
24470 ATTAAATTAG
24480 TATTATTAATTACAATAA-TTAAA
1 TATTATT-ATTA-AA-AATTTAAA
24503 TATTATTATTAAAAATTTTAAA
1 TATTATTATTAAAAA-TTTAAA
24525 TATTATTA
1 TATTATTA
24533 AAATTATTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
20 2 0.07
21 2 0.07
22 17 0.61
23 7 0.25
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTATTATTAAAAATTTAAA
Found at i:24528 original size:19 final size:20
Alignment explanation
Indices: 24506--24545 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
24496 AATTAAATAT
24506 TATTATTAAAAAT-TTTAAA
1 TATTATTAAAAATATTTAAA
*
24525 TATTATTAAAATTATTTAAA
1 TATTATTAAAAATATTTAAA
24545 T
1 T
24546 TAATTAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTATTAAAAATATTTAAA
Found at i:24551 original size:19 final size:19
Alignment explanation
Indices: 24510--24552 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
24500 AAATATTATT
*
24510 ATTAAAAATTTTAAATATT
1 ATTAAAAATTTTAAATATA
*
24529 ATTAAAATTATTTAAAT-TA
1 ATTAAAAAT-TTTAAATATA
24548 ATTAA
1 ATTAA
24553 TACTCAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
ATTAAAAATTTTAAATATA
Found at i:24646 original size:36 final size:35
Alignment explanation
Indices: 24565--24646 Score: 87
Period size: 36 Copynumber: 2.3 Consensus size: 35
24555 CTCAACTAAT
24565 TTATAAATAATAAATTATAAATTATTACTAATATGA
1 TTATAAAT-ATAAATTATAAATTATTACTAATATGA
* * *
24601 TTATTAATAT-AGTTATAAATTATATATGTAATATTG-
1 TTATAAATATAAATTATAAATTAT-TA-CTAATA-TGA
24637 TTATAAATAT
1 TTATAAATAT
24647 TATAAGCTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 12 0.31
35 4 0.10
36 21 0.54
37 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.46
Consensus pattern (35 bp):
TTATAAATATAAATTATAAATTATTACTAATATGA
Found at i:24896 original size:33 final size:32
Alignment explanation
Indices: 24818--24897 Score: 83
Period size: 33 Copynumber: 2.4 Consensus size: 32
24808 AATAATTAGT
*
24818 ATTTAATAAAAATTAATAATATAAATATATTATA
1 ATTTAATAAATA-T-ATAATATAAATATATTATA
* *
24852 A-TTAATGAATATATAAT-TTAATATATTATAA
1 ATTTAATAAATATATAATATAAATATATTAT-A
24883 GATTTAATAAATATA
1 -ATTTAATAAATATA
24898 GTTAATTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
30 11 0.28
31 6 0.15
32 2 0.05
33 19 0.49
34 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (32 bp):
ATTTAATAAATATATAATATAAATATATTATA
Found at i:24935 original size:16 final size:18
Alignment explanation
Indices: 24905--24938 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
24895 ATAGTTAATT
24905 ATTATAAACATATATTAA
1 ATTATAAACATATATTAA
24923 ATTAT-AACA-ATATTAA
1 ATTATAAACATATATTAA
24939 CATGATTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 4 0.25
18 5 0.31
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (18 bp):
ATTATAAACATATATTAA
Found at i:24995 original size:14 final size:14
Alignment explanation
Indices: 24973--25094 Score: 53
Period size: 14 Copynumber: 8.8 Consensus size: 14
24963 ATTATAATAC
24973 AATTAAATTAATATT
1 AATT-AATTAATATT
24988 AATTAATTAATTATT
1 AATTAATTAA-TATT
* **
25003 AA-TATTTAGCATT
1 AATTAATTAATATT
25016 CAA-T-A-T-AT-TT
1 -AATTAATTAATATT
*
25026 AATTTAATTAATTTT
1 AA-TTAATTAATATT
25041 AATTAAATTAAT-TCT
1 AATT-AATTAATAT-T
* * *
25056 -ATTCATTATTGTT
1 AATTAATTAATATT
*
25069 AATTAATAAATATT
1 AATTAATTAATATT
25083 AATTAAATTAAT
1 AATT-AATTAAT
25095 GTAACTATAA
Statistics
Matches: 81, Mismatches: 13, Indels: 26
0.68 0.11 0.22
Matches are distributed among these distances:
9 2 0.02
10 2 0.02
11 1 0.01
12 2 0.02
13 10 0.12
14 36 0.44
15 28 0.35
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (14 bp):
AATTAATTAATATT
Found at i:25051 original size:19 final size:19
Alignment explanation
Indices: 25024--25094 Score: 52
Period size: 19 Copynumber: 3.5 Consensus size: 19
25014 TTCAATATAT
*
25024 TTAATTTAATTAATTTTAA
1 TTAAATTAATTAATTTTAA
* *
25043 TTAAATTAATTCTATTCATTAT
1 TTAAATTAATT-AATT--TTAA
* * *
25065 TGTTAATTAATAAATATTAA
1 T-TAAATTAATTAATTTTAA
25085 TTAAATTAAT
1 TTAAATTAAT
25095 GTAACTATAA
Statistics
Matches: 39, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
19 18 0.46
20 7 0.18
22 6 0.15
23 8 0.21
ACGTcount: A:0.44, C:0.03, G:0.01, T:0.52
Consensus pattern (19 bp):
TTAAATTAATTAATTTTAA
Found at i:26558 original size:25 final size:25
Alignment explanation
Indices: 26525--26594 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
26515 TATATGAATT
**
26525 TATTCAAATATT-TTATATAATTATAG
1 TATT-AAATATTATTA-ATAAAAATAG
26551 TATTAAATATTATTAATAAAAATAG
1 TATTAAATATTATTAATAAAAATAG
*
26576 TAATAATATATTACTTAAT
1 TATTAA-ATATTA-TTAAT
26595 TAATATAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
25 20 0.53
26 13 0.34
27 5 0.13
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (25 bp):
TATTAAATATTATTAATAAAAATAG
Found at i:26603 original size:21 final size:20
Alignment explanation
Indices: 26578--26616 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26568 AAAAATAGTA
26578 ATAATATATTACTTAATTAAT
1 ATAATATA-TACTTAATTAAT
*
26599 ATAATATATATTTAATTA
1 ATAATATATACTTAATTA
26617 TAACATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATAATATATACTTAATTAAT
Found at i:26690 original size:49 final size:49
Alignment explanation
Indices: 26577--26698 Score: 126
Period size: 49 Copynumber: 2.5 Consensus size: 49
26567 TAAAAATAGT
*
26577 AATAATAT-ATTACTTAATTAATATAATATATATTTAATTATAACATTA
1 AATAATATAATTATTTAATTAATATAATATATATTTAATTATAACATTA
* * * *
26625 AATAGTCATAACTATTTGAATTAGTATATTATATATTTTAA-TAT-AC-TTA
1 AATAAT-ATAATTATTT-AATTAATATAATATATA-TTTAATTATAACATTA
26674 AATAAATATAATTATTTAATCTAAT
1 AAT-AATATAATTATTTAAT-TAAT
26699 TTATTATTAT
Statistics
Matches: 60, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
48 8 0.13
49 20 0.33
50 9 0.15
51 18 0.30
52 5 0.08
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (49 bp):
AATAATATAATTATTTAATTAATATAATATATATTTAATTATAACATTA
Found at i:26841 original size:21 final size:20
Alignment explanation
Indices: 26781--26850 Score: 54
Period size: 21 Copynumber: 3.5 Consensus size: 20
26771 AATTATATAG
*
26781 TTAATTAATAAT-TAATTAAT
1 TTAATT-ATAATATAATTAAA
* **
26801 TTTATTATAATATTTGTTAAA
1 TTAATTATAATA-TAATTAAA
26822 TTAATTAGTAATATAATT-AA
1 TTAATTA-TAATATAATTAAA
*
26842 TTTATTATA
1 TTAATTATA
26851 TAATTTATAT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
19 7 0.18
20 13 0.33
21 14 0.36
22 5 0.13
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (20 bp):
TTAATTATAATATAATTAAA
Found at i:26962 original size:25 final size:24
Alignment explanation
Indices: 26917--27020 Score: 72
Period size: 25 Copynumber: 4.3 Consensus size: 24
26907 CTATTATACT
* * *
26917 TAAATATAATATATTGTTATTTATC
1 TAAATATATTATATT-ATATTTATA
26942 TAAATATATTATAATTATA-TTATA
1 TAAATATATTAT-ATTATATTTATA
*
26966 TATATA-ATTATATTATTATTTA-A
1 TAAATATATTATATTA-TATTTATA
* * *
26989 TTAATAATAATATATTGATA-CTATA
1 TAAAT-ATATTATATT-ATATTTATA
27014 TAAATAT
1 TAAATAT
27021 TAAAATAAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
22 4 0.06
23 11 0.17
24 17 0.27
25 27 0.43
26 4 0.06
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (24 bp):
TAAATATATTATATTATATTTATA
Found at i:26993 original size:20 final size:17
Alignment explanation
Indices: 26945--26991 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
26935 ATTTATCTAA
26945 ATATATTATAATTATATT
1 ATATA-TATAATTATATT
26963 ATATATATAATTATATT
1 ATATATATAATTATATT
*
26980 AT-TATTTAATTA
1 ATATATATAATTA
26992 ATAATAATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
16 9 0.32
17 14 0.50
18 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATATATATAATTATATT
Found at i:27014 original size:48 final size:46
Alignment explanation
Indices: 26908--27015 Score: 114
Period size: 48 Copynumber: 2.3 Consensus size: 46
26898 TAAGATAAAC
* * *
26908 TATTATACT-TAAATATAATATATTGTTATTTATCTAAATATATTA
1 TATTATACTATATATATAATATATTATTATTTATCTAAATATAATA
*
26953 TAATTATATTATATATATAATTATATTATTATTTAAT-T-AATAATAATA
1 T-ATTATACTATATATATAA-TATATTATTATTT-ATCTAAAT-ATAATA
27001 TATTGATACTATATA
1 TATT-ATACTATATA
27016 AATATTAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
45 1 0.02
46 7 0.13
47 14 0.27
48 28 0.54
49 2 0.04
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (46 bp):
TATTATACTATATATATAATATATTATTATTTATCTAAATATAATA
Found at i:27126 original size:15 final size:15
Alignment explanation
Indices: 27106--27136 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27096 AAATCCTAAT
27106 TAAAATAAATAATAA
1 TAAAATAAATAATAA
*
27121 TAAAATATATAATAA
1 TAAAATAAATAATAA
27136 T
1 T
27137 TATATTAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
TAAAATAAATAATAA
Found at i:27155 original size:24 final size:25
Alignment explanation
Indices: 27118--27168 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
27108 AAATAAATAA
*
27118 TAATAAAATATATAATAA-TTATAT
1 TAATAAAATATATAATAAGTTAAAT
* *
27142 TAATATAATTTATAATAAGTTAAAT
1 TAATAAAATATATAATAAGTTAAAT
27167 TA
1 TA
27169 TTAATTGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (25 bp):
TAATAAAATATATAATAAGTTAAAT
Found at i:27451 original size:15 final size:16
Alignment explanation
Indices: 27420--27467 Score: 55
Period size: 15 Copynumber: 3.0 Consensus size: 16
27410 TGTATTCAAA
27420 TAATATATTAATAATT
1 TAATATATTAATAATT
*
27436 TAATAT-TTAATTATT
1 TAATATATTAATAATT
27451 T-ATCATAATTAATAATT
1 TAAT-AT-ATTAATAATT
27468 ATTTATATCA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 2 0.07
15 11 0.41
16 6 0.22
17 8 0.30
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATATATTAATAATT
Found at i:27868 original size:14 final size:15
Alignment explanation
Indices: 27842--27870 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27832 TACTTATTTT
27842 TTAATATAATAATTG
1 TTAATATAATAATTG
27857 TTAATA-AATAATTG
1 TTAATATAATAATTG
27871 ATTTAAGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTAATATAATAATTG
Found at i:28048 original size:25 final size:26
Alignment explanation
Indices: 27992--28055 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 26
27982 ATTATTATTT
* *
27992 ATAATTTATAATAAATATATATAATTA
1 ATAATTTAT-ATTAATATATATAAATA
*
28019 A-AATTTATATTAATA-ATTTAAATA
1 ATAATTTATATTAATATATATAAATA
*
28043 ATAATTAATATTA
1 ATAATTTATATTA
28056 TATGATTATA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
24 8 0.25
25 16 0.50
26 7 0.22
27 1 0.03
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (26 bp):
ATAATTTATATTAATATATATAAATA
Found at i:28556 original size:14 final size:15
Alignment explanation
Indices: 28537--28601 Score: 64
Period size: 14 Copynumber: 4.5 Consensus size: 15
28527 GGAAATATTA
28537 TAATATATTTAT-AT
1 TAATATATTTATAAT
28551 TAATATA-TTATAAT
1 TAATATATTTATAAT
* *
28565 TAATAAAATTATTAA-
1 TAATATATTTA-TAAT
* *
28580 TATTAAATTTATAAT
1 TAATATATTTATAAT
28595 TAATATA
1 TAATATA
28602 AATTGACAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
13 4 0.10
14 18 0.43
15 17 0.40
16 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATATATTTATAAT
Found at i:28603 original size:32 final size:32
Alignment explanation
Indices: 28542--28605 Score: 96
Period size: 30 Copynumber: 2.0 Consensus size: 32
28532 TATTATAATA
*
28542 TATTTATATTAATATATTATAATTAATAAAAT
1 TATTAATATTAATATATTATAATTAATAAAAT
28574 TATTAATATTAA-AT-TTATAATTAATATAAAT
1 TATTAATATTAATATATTATAATTAATA-AAAT
28605 T
1 T
28606 GACAAATATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 12 0.40
31 7 0.23
32 11 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (32 bp):
TATTAATATTAATATATTATAATTAATAAAAT
Found at i:28614 original size:32 final size:32
Alignment explanation
Indices: 28547--28615 Score: 88
Period size: 32 Copynumber: 2.2 Consensus size: 32
28537 TAATATATTT
**
28547 ATATTAATATATTATAATTAATAAAATTATTA
1 ATATTAATATATTATAATTAATAAAATTACAA
28579 ATATTAA-AT-TTATAATTAATATAAATTGACAA
1 ATATTAATATATTATAATTAATA-AAATT-ACAA
28611 ATATT
1 ATATT
28616 TTTATTTGTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
30 12 0.36
31 7 0.21
32 14 0.42
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (32 bp):
ATATTAATATATTATAATTAATAAAATTACAA
Found at i:28668 original size:4 final size:4
Alignment explanation
Indices: 28661--28701 Score: 55
Period size: 4 Copynumber: 9.5 Consensus size: 4
28651 TATTAATTTA
28661 AATT AATT AATT AATT AATTT AATT AATT ATATAT AATT AA
1 AATT AATT AATT AATT AA-TT AATT AATT A-AT-T AATT AA
28702 AATATTTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
4 24 0.71
5 8 0.24
6 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (4 bp):
AATT
Found at i:28683 original size:17 final size:18
Alignment explanation
Indices: 28652--28690 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
28642 ATTAATATTT
28652 ATTAATTTAAATTAATTA
1 ATTAATTTAAATTAATTA
*
28670 ATTAA-TTAATTTAATTA
1 ATTAATTTAAATTAATTA
28687 ATTA
1 ATTA
28691 TATATAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 15 0.75
18 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTAATTTAAATTAATTA
Found at i:29240 original size:18 final size:19
Alignment explanation
Indices: 29217--29264 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
29207 TATTTATTCT
*
29217 ATTAATTATCTATTTTA-A
1 ATTAATTATCTATTTGATA
29235 ATTAATTAAT-TATTTGATA
1 ATTAATT-ATCTATTTGATA
29254 ATATAATTATC
1 AT-TAATTATC
29265 AAATCTTACT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 13 0.52
19 7 0.28
20 5 0.20
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (19 bp):
ATTAATTATCTATTTGATA
Found at i:29321 original size:15 final size:16
Alignment explanation
Indices: 29255--29331 Score: 72
Period size: 15 Copynumber: 4.9 Consensus size: 16
29245 TATTTGATAA
*
29255 TATAATTATCAA-ATCT
1 TATAATTAT-AATATAT
29271 TACTAATT-TAATACTA-
1 TA-TAATTATAATA-TAT
* *
29287 TATTATTCTAATATAT
1 TATAATTATAATATAT
29303 TATAATTATAATA-AT
1 TATAATTATAATATAT
29318 TATAATTATAATAT
1 TATAATTATAATAT
29332 TACAAAAGGA
Statistics
Matches: 51, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
15 23 0.45
16 22 0.43
17 6 0.12
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (16 bp):
TATAATTATAATATAT
Found at i:30096 original size:182 final size:181
Alignment explanation
Indices: 29590--30132 Score: 593
Period size: 182 Copynumber: 3.0 Consensus size: 181
29580 TTAATAAGAT
* * * * * *
29590 AATTAATAAGTAAAAG-ATTTAAAAAATAAATCTATTTATCGAACAAATTCAAATTGTTATGATT
1 AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * *
29654 ATCTGAATAATTATTTATTTCAAATTC-TTATGACTTTTTTGTTTTGTCATAAAACAATTGTTTC
66 ATCTTAATAATTATCTATTTCAAA-TCATTATAAC-ATTTTGTTTTGTCATAAAACAATTGTTTC
** * * * * * * *
29718 CGTCCATATGAGCTTATTCGAATTAAAATAATATTGATTTATTAATATTTCAAC
129 AATTCATATAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
* * * *
29772 AATTAATAAA-TAAAAGATTTAAAAAAAT-AA---GTTTACCAAACAAGTTCAAATAGTCATGAC
1 AATTAA-AAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGAC
* * * * *
29832 TAT-TTGAATAATTATCAACTTCAAATCATTGTAACATTTTGTTTTGTAATAAACCAATTGTTTC
65 TATCTT-AATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTC
* *
29896 AATTCATGTTAGCTTATTTGAAATAAAATAATACTAATTTATTAATATTCCAAA
129 AATTCATATAAGCTTATTTGAAATAAAATAATA-TAATTTATTAATATTCCAAA
*
29950 AATTAAAAAGTAAGAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
1 AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
* * * *
30015 ATCTTAATAATTATCTATTTCAAAACATTACAACCTTTTGTTTTGTCATAAAACAATTGGTTT-T
66 ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATT-GTTTCA
* * *
30079 ATTCAT-TCAACCTTATTTTAAATAAAATAATATAAATTTATTAATGTTCCAAA
130 ATTCATAT-AAGCTTATTTGAAATAAAATAATAT-AATTTATTAATATTCCAAA
30132 A
1 A
30133 CCAATTGTTT
Statistics
Matches: 300, Mismatches: 48, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
177 3 0.01
178 94 0.31
179 49 0.16
181 2 0.01
182 135 0.45
183 17 0.06
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AATTAAAAAGTAAAAGAATTAAAAAAATAAATCTGTTTATCGAACAAGTTCAAATAGTTATGACT
ATCTTAATAATTATCTATTTCAAATCATTATAACATTTTGTTTTGTCATAAAACAATTGTTTCAA
TTCATATAAGCTTATTTGAAATAAAATAATATAATTTATTAATATTCCAAA
Found at i:31001 original size:182 final size:176
Alignment explanation
Indices: 30659--31229 Score: 561
Period size: 182 Copynumber: 3.2 Consensus size: 176
30649 TTTTTAAATA
* * *
30659 AATTTA-TTTTTAAAAT-TTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTATTTTAT
1 AATTTATTTTTTTAAATCTTTTACTTATTAAATTTTGGAATATTAATAAA-TTATATTATTTTAT
* * * * * **
30722 TTGAAATAAGCTTGAATGAATGAACCAATTGTTTTATGACAAAACAAAAGGTTGTAATGTTTTGA
65 TTCAAATAAGC-TAAATGAATGAAACAATTGTTTTATGACAAAACAAAAAGCTAAAATG--TTGA
30787 AATAGATAATTATT-AAGATAGTCATAACTATTTGAACTTGTTCTATAAAC
127 AATAGATAATTATTCAA-ATAGTCATAACTATTTGAACTTGTTCTATAAAC
* * *
30837 ATATTTATTTTTTTAATTCTCTTACTTTTTAAATTTTGGAATATTAATAAATTAGTATTATTTTA
1 A-ATTTATTTTTTTAAATCTTTTACTTATTAAATTTTGGAATATTAATAAATTA-TATTATTTTA
* * *
30902 TTTCAAATAAGCTAACATGAATTTAAACAATTGTTTTATTACAAAACAAAATGCTAAAATGATGT
64 TTTCAAATAAGCTAA-ATGAA-TGAAACAATTGTTTTATGACAAAACAAAAAGCTAAAATG-T-T
* * * *
30967 GAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTATT-TGGTAAAC
125 GAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCT-ATAAAC
* *
31019 ---TTATTTTTTTAAAATCTTTTACTTATT-AATTGTTGAAATATTAATAAATCAATATTATTTT
1 AATTTATTTTTTT-AAATCTTTTACTTATTAAATT-TTGGAATATTAATAAAT-TATATTATTTT
* * * **
31080 AATCCGAATAAGCTCGTATGGACA-GAAACAATTGTTTTATGACAAAACAAAAAAGTCATAAGAA
63 ATTTCAAATAAGCT-AAAT-GA-ATGAAACAATTGTTTTATGACAAAAC-AAAAAG-C-TAA-AA
* * * * * *
31144 T-TTGAAATAAATAATTATTCAGATAGTCATAACGATTTGAATTTGTTCGATAAAT
121 TGTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCTATAAAC
31199 AGATTTA-TTTTTTAAATCTTTTACTTATTAA
1 A-ATTTATTTTTTTAAATCTTTTACTTATTAA
31230 TTGTCCTATT
Statistics
Matches: 325, Mismatches: 43, Indels: 45
0.79 0.10 0.11
Matches are distributed among these distances:
178 15 0.05
179 78 0.24
180 63 0.19
181 59 0.18
182 95 0.29
183 12 0.04
184 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (176 bp):
AATTTATTTTTTTAAATCTTTTACTTATTAAATTTTGGAATATTAATAAATTATATTATTTTATT
TCAAATAAGCTAAATGAATGAAACAATTGTTTTATGACAAAACAAAAAGCTAAAATGTTGAAATA
GATAATTATTCAAATAGTCATAACTATTTGAACTTGTTCTATAAAC
Found at i:31242 original size:179 final size:177
Alignment explanation
Indices: 30653--31244 Score: 533
Period size: 179 Copynumber: 3.3 Consensus size: 177
30643 CATTAATTTT
* * * *
30653 TAAATAAATTTATTTTTAAAAT-TTTTACTTATTAATTTTTGGAACATTAATAAATTTATATTAT
1 TAAATATATTTATTTTTAAAATCTTTTACTTATTAA--TTTGTAATATTAATAAATTAATATTAT
* * * * *
30717 TTT-ATTTGAAATAAGCTTGAAT-GAATGAACCAATTGTTTTATGACAAAACAAAAGGTTGTAAT
64 TTTAATTCG-AATAAGCTAGAATGGAA-GAAACAATTGTTTTATGACAAAACAAAAAG-TCTAA-
* * *
30780 G-TTTTGAAATAGATAATTATTAAGATAGTCATAACTATTTGAACTTGTTCTA
125 GAATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTGAACTTGTTCGA
* * * * * * *
30832 TAAACATATTTATTTTTTTAATTCTCTTACTTTTTAAATTTTGGAATATTAATAAATTAGTATTA
1 TAAATATATTTA-TTTTTAAAATCTTTTACTTATT-AA-TTTGTAATATTAATAAATTAATATTA
* * * * *
30897 TTTTATTTCAAATAAGCTA-ACAT-GAATTTAAACAATTGTTTTATTACAAAACAAAATG-CTAA
63 TTTTAATTCGAATAAGCTAGA-ATGGAA--GAAACAATTGTTTTATGACAAAACAAAAAGTCTAA
* * * * * *
30959 -AATGATGTGAAGTAGATAATTATTCAAATAGTCATGACTATTTGAACTTATTTGG
125 GAAT--T-TGAAATAGATAATTATTCAGATAGTCATAACTATTTGAACTTGTTCGA
* *
31014 TAAACT-TA-TT-TTTTTAAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATCAATATTA
1 TAAA-TATATTTATTTTTAAAATCTTTTACTTATTAA-T-TTGTAATATTAATAAATTAATATTA
* * *
31076 TTTTAATCCGAATAAGCTCGTATGGACAGAAACAATTGTTTTATGACAAAACAAAAAAGTCATAA
63 TTTTAATTCGAATAAGCTAGAATGGA-AGAAACAATTGTTTTATGACAAAAC-AAAAAGTC-TAA
* * *
31141 GAATTTGAAATAAATAATTATTCAGATAGTCATAACGATTTGAATTTGTTCGA
125 GAATTTGAAATAGATAATTATTCAGATAGTCATAACTATTTGAACTTGTTCGA
* * **
31194 TAAATAGATTTATTTTTTAAATCTTTTACTTATTAA-TTGTCCTATTAATAA
1 TAAATATATTTATTTTTAAAATCTTTTACTTATTAATTTGTAATATTAATAA
31245 CTATTTATAA
Statistics
Matches: 334, Mismatches: 57, Indels: 44
0.77 0.13 0.10
Matches are distributed among these distances:
178 4 0.01
179 103 0.31
180 63 0.19
181 58 0.17
182 103 0.31
183 3 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.43
Consensus pattern (177 bp):
TAAATATATTTATTTTTAAAATCTTTTACTTATTAATTTGTAATATTAATAAATTAATATTATTT
TAATTCGAATAAGCTAGAATGGAAGAAACAATTGTTTTATGACAAAACAAAAAGTCTAAGAATTT
GAAATAGATAATTATTCAGATAGTCATAACTATTTGAACTTGTTCGA
Found at i:31483 original size:15 final size:15
Alignment explanation
Indices: 31463--31492 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31453 CCTTTTGTAA
31463 TATTATAATTATAAT
1 TATTATAATTATAAT
31478 TATTATAATTATAAT
1 TATTATAATTATAAT
31493 AGATAGAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTATAATTATAAT
Found at i:31703 original size:19 final size:19
Alignment explanation
Indices: 31676--31716 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
31666 TTAATTGTTG
* *
31676 TTTATAATAGTAAATATTA
1 TTTAAAATAGTAAATAATA
*
31695 TTTAAAATAGTTAATAATA
1 TTTAAAATAGTAAATAATA
31714 TTT
1 TTT
31717 TGAACATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTAAAATAGTAAATAATA
Found at i:31832 original size:16 final size:16
Alignment explanation
Indices: 31811--31847 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
31801 GAAGATTTTA
31811 TATTATTA-AGTATTAT
1 TATTATTATA-TATTAT
31827 TATTATTATATATTAT
1 TATTATTATATATTAT
31843 TATTA
1 TATTA
31848 CCGATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTATTATATATTAT
Found at i:31845 original size:13 final size:13
Alignment explanation
Indices: 31809--31847 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
31799 ATGAAGATTT
*
31809 TATATTATTAAGTA
1 TATATTATT-ATTA
31823 T-TATTATTATTA
1 TATATTATTATTA
31835 TATATTATTATTA
1 TATATTATTATTA
31848 CCGATAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 4 0.17
13 18 0.78
14 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
TATATTATTATTA
Found at i:32126 original size:4 final size:4
Alignment explanation
Indices: 32112--32142 Score: 53
Period size: 4 Copynumber: 7.5 Consensus size: 4
32102 AATTGTATAC
32112 AATT AATTT AATT AATT AATT AATT AATT AA
1 AATT AA-TT AATT AATT AATT AATT AATT AA
32143 AATTAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 22 0.85
5 4 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
AATT
Found at i:32692 original size:22 final size:21
Alignment explanation
Indices: 32661--32709 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
32651 ACAAAACTAT
32661 TTAATATATAATAATTATAATA
1 TTAATATATAATAATTA-AATA
* * *
32683 TTAATTTATAATTATTAACTA
1 TTAATATATAATAATTAAATA
32704 TTAATA
1 TTAATA
32710 ATGATAAGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAATATATAATAATTAAATA
Found at i:32806 original size:22 final size:22
Alignment explanation
Indices: 32774--32816 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
32764 TATAAACAAT
*
32774 TATTATTGTATTAATTT-AATAA
1 TATTATAGTATT-ATTTGAATAA
32796 TATTATAGTATTATTTGAATA
1 TATTATAGTATTATTTGAATA
32817 TAACTAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TATTATAGTATTATTTGAATAA
Found at i:33044 original size:12 final size:12
Alignment explanation
Indices: 32988--33045 Score: 55
Period size: 12 Copynumber: 4.6 Consensus size: 12
32978 TATTTTTAAT
32988 TTATTAAAATAA
1 TTATTAAAATAA
* *
33000 TAATTAATAAATTGA
1 TTATT-A-AAA-TAA
33015 TTATTAAAAT-A
1 TTATTAAAATAA
33026 TTCATTAAAATAA
1 TT-ATTAAAATAA
33039 TTATTAA
1 TTATTAA
33046 TATTTATAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
11 3 0.08
12 18 0.47
13 7 0.18
14 4 0.11
15 6 0.16
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (12 bp):
TTATTAAAATAA
Found at i:33044 original size:27 final size:27
Alignment explanation
Indices: 32988--33044 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
32978 TATTTTTAAT
*
32988 TTATTAAAATAATAATTAATAAATTGA
1 TTATTAAAATAATAATTAAAAAATTGA
* *
33015 TTATTAAAATATTCATTAAAATAATT-A
1 TTATTAAAATAATAATTAAAA-AATTGA
33042 TTA
1 TTA
33045 ATATTTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
TTATTAAAATAATAATTAAAAAATTGA
Found at i:33070 original size:31 final size:31
Alignment explanation
Indices: 33035--33305 Score: 100
Period size: 29 Copynumber: 8.9 Consensus size: 31
33025 ATTCATTAAA
33035 ATAATTATTAATATTTATAATTTAAATATAT
1 ATAATTATTAATATTTATAATTTAAATATAT
* * *
33066 ATAATAATTAATTATTT-TATTTTAATTATA-
1 ATAATTATTAA-TATTTATAATTTAAATATAT
* * *
33096 ATAAATTA-TAATTTTTTTAATTATAAAT-GA-
1 AT-AATTATTAATATTTATAATT-TAAATATAT
* * *
33126 ATAAGT-TTAATA-TAATAATATTAAATGTAAT
1 ATAATTATTAATATTTATAAT-TTAAATAT-AT
* *
33157 TTAGATTATTATATATTATATTTATATTAAA-ATAT
1 ATA-ATTATTA-ATATT-TA-TAAT-TTAAATATAT
*
33192 -T-ATTTTTAAATTATTTA-AA-TTAAAT-TAT
1 ATAATTATT-AA-TATTTATAATTTAAATATAT
33220 A-AA-TATTGTAATATATTATAA-TT-AATAT-T
1 ATAATTA-T-TAATAT-TTATAATTTAAATATAT
* *
33249 ATAA-AATTAATA-TTATAATTT-AATTTAT
1 ATAATTATTAATATTTATAATTTAAATATAT
* *
33277 ATAATTATTTATA-TTATAATATTATATAT
1 ATAATTATTAATATTTATAAT-TTAAATAT
33306 TTGAACAATT
Statistics
Matches: 182, Mismatches: 27, Indels: 62
0.67 0.10 0.23
Matches are distributed among these distances:
26 6 0.03
27 6 0.03
28 32 0.18
29 38 0.21
30 25 0.14
31 34 0.19
32 15 0.08
33 8 0.04
34 4 0.02
35 3 0.02
36 2 0.01
37 9 0.05
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (31 bp):
ATAATTATTAATATTTATAATTTAAATATAT
Found at i:33095 original size:27 final size:25
Alignment explanation
Indices: 33069--33121 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
33059 AATATATATA
*
33069 ATAATTAATTAT--TTTATTTTAATT
1 ATAATAAATTATAATTT-TTTTAATT
33093 ATAATAAATTATAATTTTTTTAATT
1 ATAATAAATTATAATTTTTTTAATT
33118 ATAA
1 ATAA
33122 ATGAATAAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 11 0.42
25 12 0.46
26 3 0.12
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (25 bp):
ATAATAAATTATAATTTTTTTAATT
Found at i:33245 original size:14 final size:14
Alignment explanation
Indices: 33228--33306 Score: 58
Period size: 14 Copynumber: 5.6 Consensus size: 14
33218 ATAAATATTG
33228 TAATATATTATAAT
1 TAATATATTATAAT
*
33242 TAATAT-TATAAAAT
1 TAATATAT-TATAAT
33256 T-A-ATATTATAATT
1 TAATATATTATAA-T
*
33269 TAATTTA-TATAAT
1 TAATATATTATAAT
*
33282 TATTTATATTATAAT
1 TA-ATATATTATAAT
*
33297 ATTATATATT
1 -TAATATATT
33307 TGAACAATTA
Statistics
Matches: 50, Mismatches: 7, Indels: 15
0.69 0.10 0.21
Matches are distributed among these distances:
12 6 0.12
13 8 0.16
14 21 0.42
15 14 0.28
16 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
TAATATATTATAAT
Found at i:33263 original size:26 final size:25
Alignment explanation
Indices: 33231--33302 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
33221 AATATTGTAA
33231 TATATTATAATTAATATTATAAAAT
1 TATATTATAATTAATATTATAAAAT
*
33256 TAATATTATAATTTAAT-TTATATAAT
1 T-ATATTATAA-TTAATATTATAAAAT
*
33282 TAT-TTATATTATAATATTATA
1 TATATTATAAT-TAATATTATA
33303 TATTTGAACA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
23 1 0.02
24 9 0.22
25 8 0.20
26 18 0.44
27 5 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (25 bp):
TATATTATAATTAATATTATAAAAT
Found at i:33632 original size:16 final size:16
Alignment explanation
Indices: 33593--33641 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
33583 TAGATAATAA
33593 TATTAATAATAACTAAAT
1 TATTAAT-ATAA-TAAAT
*
33611 TAATTAATATAATTAAT
1 T-ATTAATATAATAAAT
*
33628 TATTAATTTAATAA
1 TATTAATATAATAA
33642 TCAAAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 11 0.41
17 5 0.19
18 5 0.19
19 6 0.22
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTAATATAATAAAT
Found at i:36234 original size:21 final size:19
Alignment explanation
Indices: 36193--36237 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 19
36183 ATTTTATTTG
36193 ATTATTATTTAAAATAATA
1 ATTATTATTTAAAATAATA
*
36212 ATTATTAATTTAATAATACTA
1 ATTATT-ATTTAA-AATAATA
36233 ATTAT
1 ATTAT
36238 GATAGTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.26
20 6 0.26
21 11 0.48
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTATTATTTAAAATAATA
Found at i:37493 original size:180 final size:177
Alignment explanation
Indices: 37123--38050 Score: 693
Period size: 180 Copynumber: 5.2 Consensus size: 177
37113 ATGATCTTTA
* ** *** * * * *
37123 TTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTCATATTAAAATGATATTAATTTAA
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTAT
* * *
37188 TAATATTTCAAAAATT--AATAAGAGATTTAAAAAATAAATATG-TTAGCTGAACTAGTTCAAAT
66 TAACA-TTCAAAAATTAAAATAAGAGATTTAAAAAATAAATCTGTTTA-CTAAAC-AGTTCAAAT
* * * * * *
37250 AGTTAAGACTA-TCATAATAATTATCTATTTCAAATCATTCT-ATCCTTTTG
128 AGTTATGAGTATTTA-AACAATTATCTATTTCAAATCGTTCTGA-CATTTTG
* * *
37300 TTTAGTCATAAAACAATTATTTTAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTAT
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTAT
* *
37365 TAACATTCAAAAAATTAAAACAAGAGATTTAAAAAGATAAATCTGTTTACTAAACAATTTCAAAT
66 TAACATTC-AAAAATTAAAATAAGAGATTTAAAAA-ATAAATCTGTTTACTAAAC-AGTTCAAAT
* * ** *
37430 AGATATGAGTATTTAAACAATTATCTATTTAAAATTATTTTGACATTTTG
128 AGTTATGAGTATTTAAACAATTATCTATTTCAAATCGTTCTGACATTTTG
* * * * * *
37480 TTTTGTCATAAAACAATTGTTTCAGTTAATAAAAACTTATCTGAAATAAAATAATACTACTTTAT
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTAT
* *** * * * * *
37545 TAATATTTCAAAAATTATTAGGCAAGAGATTTAAAAACTAAAGCTATTT-TTCAAAGCAGTTCTA
66 TAACA-TTCAAAAATTA--AAATAAGAGATTTAAAAAATAAATCTGTTTACT-AAA-CAGTTCAA
* * * *
37609 ATAGTTATAAGTATTTAAACAAATAT-TAATCTCAAATCGTTATG--ATCTTTG
126 ATAGTTATGAGTATTTAAACAATTATCT-ATTTCAAATCGTTCTGACAT-TTTG
** * * *
37660 TTTTGTCATAAAACAATTGTTT-TTTATCATATAAGCTGATTCGG-ATAAAAATAATACTAATTT
1 TTTTGTCATAAAACAATTGTTTCAGT-TCATACAAGCTTATTTGGAAT-AAAATAATACTAATTT
* * ** * ** * *
37723 AATAAGATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATGT-TTTTGTCGATCAGTTCA
64 ATTAACA-TTCAAAAATTAA-AA-TAAGAGATTTAAAAAATAAATCTGTTTACT-AAACAGTTCA
* * *
37787 AATAGTTAAGATTA-TTAGAATAATTATCTATTTCAAATCGTTCTGACCA-TTTG
125 AATAGTTATGAGTATTTA-AACAATTATCTATTTCAAATCGTTCTGA-CATTTTG
** * * *
37840 TTTAATCATAAAATAATTATTTCAGTTCATACAAGCTTA-TT-CAATAGAAAATAATACTAATTT
1 TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGGAAT--AAAATAATACTAATTT
* * * * * * * *
37903 ATTAACTTTTGAAAGATTAATAAGTAGGATATTTGAAAAACTAAATTTGTTTACCAAACAAGTTC
64 ATTAAC-ATTCAAAAATTAA-AA-TAAGAGATTT-AAAAAATAAATCTGTTTACTAAAC-AGTTC
* * * * *
37968 AAATAGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTGTGA-ATTTTTG
124 AAATAGTTATGAGTATTTAAACAATTATCTATTTCAAATCGTTCTGACA-TTTTG
* *
38022 TTTTGTCATAAAATAATTGTTTTAGTTCA
1 TTTTGTCATAAAACAATTGTTTCAGTTCA
38051 CAAAAGTTTA
Statistics
Matches: 596, Mismatches: 121, Indels: 63
0.76 0.16 0.08
Matches are distributed among these distances:
176 3 0.01
177 63 0.11
178 4 0.01
179 65 0.11
180 292 0.49
181 74 0.12
182 93 0.16
183 2 0.00
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.40
Consensus pattern (177 bp):
TTTTGTCATAAAACAATTGTTTCAGTTCATACAAGCTTATTTGGAATAAAATAATACTAATTTAT
TAACATTCAAAAATTAAAATAAGAGATTTAAAAAATAAATCTGTTTACTAAACAGTTCAAATAGT
TATGAGTATTTAAACAATTATCTATTTCAAATCGTTCTGACATTTTG
Done.