Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168471.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_70, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 129858
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
File 2 of 4
Found at i:37789 original size:360 final size:362
Alignment explanation
Indices: 37296--38050 Score: 789
Period size: 360 Copynumber: 2.1 Consensus size: 362
37286 ATTCTATCCT
* * * *
37296 TTTGTTTAGTCATAAAACAATTATTTTAGTTCATACAAGCTTATTTGGAATAAAATAATACTAAT
1 TTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTGATTCGGAATAAAATAATACTAAT
* *
37361 TTATTAACATTCAAAAAATTAAAACAAGAGATTTAAAAAGATAAATCTGTTTACTAAACAATTTC
66 TTAATAACATTCAAAAAATTAAAACAAGAGATTTAAAAAGATAAATCTGTTTACTAAACAAGTTC
* * * **
37426 AAATAGATATGAGTATTTA-AACAATTATCTATTTAAAATTATTTTGA-CATTTTGTTTTGTCAT
131 AAATAGATAAGAGTA-TTAGAACAATTATCTATTTAAAATCATTCTGACCA-TTTGTTTAATCAT
* * * *
37489 AAAACAATTGTTTCAGTTAATAAAAACTTATCTGAA-ATAAAATAATACTACTTTATTAA-TATT
194 AAAACAATTATTTCAGTTAATAAAAACTTAT-TCAATAGAAAATAATACTAATTTATTAACT-TT
* * ** *
37552 TCAAAAATTATTAGGCAAGAGATTT-AAAAACTAAAGCTATTTTTCAAAGC-AGTTCTAATAGTT
257 TCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTATTTACCAAA-CAAGTTCAAATAGTT
*
37615 ATAAGTATTTAAACAAATAT-TAATCTCAAATCGTTATG-ATC
321 ATAAGTATTTAAACAAATATCT-ATCTAAAATCGTTATGAATC
* *
37656 TTTGTTTTGTCATAAAACAATTGTTTT-TTATCATATAAGCTGATTCGG-ATAAAAATAATACTA
1 TTTGTTTTGTCATAAAACAATTGTTTTAGT-TCATACAAGCTGATTCGGAAT-AAAATAATACTA
* *** * * ** * *
37719 ATTTAATAAGATTTTGAAAATTAATAAGTAAGAGATTTAAAAA-ATAAATGT-TTTTGTCGATC-
64 ATTTAATAACATTCAAAAAATTAA-AA-CAAGAGATTTAAAAAGATAAATCTGTTTACT-AAACA
* * * * *
37781 AGTTCAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCGTTCTGACCATTTGTTTAAT
126 AGTTCAAATAGATAAGAGTATTAGAACAATTATCTATTTAAAATCATTCTGACCATTTGTTTAAT
* * * *
37846 CATAAAATAATTATTTCAGTTCATACAAGCTTATTCAATAGAAAATAATACTAATTTATTAACTT
191 CATAAAACAATTATTTCAGTTAATAAAAACTTATTCAATAGAAAATAATACTAATTTATTAACTT
* * * * * ** *
37911 TTGAAAGATTAATAAGTAGGATATTTGAAAAACTAAATTTGTTTACCAAACAAGTTCAAATAGTT
256 TTCAAAAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTATTTACCAAACAAGTTCAAATAGTT
* * * * * * * *
37976 ATGATTATTTGAACAATTATCTATTTAAAATTGTTGTGAATT
321 ATAAGTATTTAAACAAATATCTATCTAAAATCGTTATGAATC
*
38018 TTTGTTTTGTCATAAAATAATTGTTTTAGTTCA
1 TTTGTTTTGTCATAAAACAATTGTTTTAGTTCA
38051 CAAAAGTTTA
Statistics
Matches: 321, Mismatches: 60, Indels: 26
0.79 0.15 0.06
Matches are distributed among these distances:
359 9 0.03
360 193 0.60
361 72 0.22
362 46 0.14
363 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.10, T:0.40
Consensus pattern (362 bp):
TTTGTTTTGTCATAAAACAATTGTTTTAGTTCATACAAGCTGATTCGGAATAAAATAATACTAAT
TTAATAACATTCAAAAAATTAAAACAAGAGATTTAAAAAGATAAATCTGTTTACTAAACAAGTTC
AAATAGATAAGAGTATTAGAACAATTATCTATTTAAAATCATTCTGACCATTTGTTTAATCATAA
AACAATTATTTCAGTTAATAAAAACTTATTCAATAGAAAATAATACTAATTTATTAACTTTTCAA
AAATTAATAAGCAAGAGATTTGAAAAACTAAAGCTATTTACCAAACAAGTTCAAATAGTTATAAG
TATTTAAACAAATATCTATCTAAAATCGTTATGAATC
Found at i:37875 original size:540 final size:539
Alignment explanation
Indices: 37103--38104 Score: 1331
Period size: 542 Copynumber: 1.9 Consensus size: 539
37093 ATAATTATAA
* * *
37103 TCAAATCATAATGATCTTTATTTTGTCATACAACAATTGTTTCCTTTCATACAAGCTTATTCATA
1 TCAAATCATAATGATCTTTATTTTGTCATAAAACAATTGTTTCCTTTCATACAAGCTGATTCAGA
* * * * *
37168 TTAAAATGATATTAATTTAATAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAATATGTTA
66 TAAAAATAATACTAATTTAATAAGATTTCAAAAAATAATAAGAGATTTAAAAAATAAATATGTTA
* *
37233 GCTGAACTAGTTCAAATAGTTAAGACTATCATAATAATTATCTATTTCAAATCATTCTATCCTTT
131 GCTGAACTAGTTCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCTATCCATT
* * *
37298 TGTTTAGTCATAAAACAATTATTTTAGTTCATACAAGCTTATTTGGAAT-AAAATAATACTAATT
196 TGTTTAATCATAAAACAATTATTTCAGTTCATACAAGCTTA-TT-CAATAAAAATAATACTAATT
* *
37362 TATTAACATTCAAAAAATTAA-AA-CAAGAGATTT-AAAAAGATAAATCTGTTTACTAAACAATT
259 TATTAACATTCAAAAAATTAATAAGCAAGAGATTTGAAAAA-ATAAATCTGTTTACCAAACAAGT
*
37424 TCAAATAGATATGAGTATTTAAACAATTATCTATTTAAAATTATTTTGACA-TTTTGTTTTGTCA
323 TCAAATAGATATGAGTATTTAAACAATTATCTATTTAAAATTATTGTGA-ATTTTTGTTTTGTCA
* **
37488 TAAAACAATTGTTTCAGTTAATAAAAACTTATCTGAAATAAAATAATACTAC-TTTATTAATATT
387 TAAAACAATTGTTTCAGTTAACAAAAACTTATCCAAAATAAAATAATACTACTTTTATTAATATT
37552 TCAAAAATTATTAGGCAAGAGATTTAAAAACTAAAGCTATTTTTCAAAGCAGTTCTAATAGTTAT
452 TCAAAAATTATTAGGCAAGAGATTTAAAAACTAAAGCTATTTTTCAAAGCAGTTCTAATAGTTAT
37617 AAGTATTTAAACAAATATTAATC
517 AAGTATTTAAACAAATATTAATC
* * * * * *
37640 TCAAATCGTTATGATCTTTGTTTTGTCATAAAACAATTGTTT-TTTATCATATAAGCTGATTCGG
1 TCAAATCATAATGATCTTTATTTTGTCATAAAACAATTGTTTCCTT-TCATACAAGCTGATTCAG
* *
37704 ATAAAAATAATACTAATTTAATAAGATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATG
65 ATAAAAATAATACTAATTTAATAAGA-TTTCAAAA--AATAA-TAAGAGATTTAAAAAATAAATA
* * * * * *
37769 TTTTTG-TCGATC-AGTTCAAATAGTTAAGATTATTAGAATAATTATCTATTTCAAATCGTTCTG
126 TGTTAGCT-GAACTAGTTCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCT-
*
37832 A-CCATTTGTTTAATCATAAAATAATTATTTCAGTTCATACAAGCTTATTCAATAGAAAATAATA
189 ATCCATTTGTTTAATCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAATA-AAAATAATA
* ** * * * * * *
37896 CTAATTTATTAACTTTTGAAAGATTAATAAGTAGGATATTTGAAAAACTAAATTTGTTTACCAAA
253 CTAATTTATTAACATTCAAAAAATTAATAAGCAAGAGATTTGAAAAAATAAATCTGTTTACCAAA
* * * *
37961 CAAGTTCAAATAGTTATGATTATTTGAACAATTATCTATTTAAAATTGTTGTGAATTTTTGTTTT
318 CAAGTTCAAATAGATATGAGTATTTAAACAATTATCTATTTAAAATTATTGTGAATTTTTGTTTT
* * * ** *
38026 GTCATAAAATAATTGTTTTAGTTCACAAAAGTTTATCCAAAATAAAATAATACTACTTTTCTTAA
383 GTCATAAAACAATTGTTTCAGTTAACAAAAACTTATCCAAAATAAAATAATACTACTTTTATTAA
**
38091 TATTTTGAAAATTA
448 TATTTCAAAAATTA
38105 AGAGATTTAA
Statistics
Matches: 396, Mismatches: 55, Indels: 22
0.84 0.12 0.05
Matches are distributed among these distances:
536 2 0.01
537 74 0.19
538 10 0.03
539 2 0.01
540 125 0.32
541 32 0.08
542 127 0.32
543 24 0.06
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.40
Consensus pattern (539 bp):
TCAAATCATAATGATCTTTATTTTGTCATAAAACAATTGTTTCCTTTCATACAAGCTGATTCAGA
TAAAAATAATACTAATTTAATAAGATTTCAAAAAATAATAAGAGATTTAAAAAATAAATATGTTA
GCTGAACTAGTTCAAATAGTTAAGACTATCAGAATAATTATCTATTTCAAATCATTCTATCCATT
TGTTTAATCATAAAACAATTATTTCAGTTCATACAAGCTTATTCAATAAAAATAATACTAATTTA
TTAACATTCAAAAAATTAATAAGCAAGAGATTTGAAAAAATAAATCTGTTTACCAAACAAGTTCA
AATAGATATGAGTATTTAAACAATTATCTATTTAAAATTATTGTGAATTTTTGTTTTGTCATAAA
ACAATTGTTTCAGTTAACAAAAACTTATCCAAAATAAAATAATACTACTTTTATTAATATTTCAA
AAATTATTAGGCAAGAGATTTAAAAACTAAAGCTATTTTTCAAAGCAGTTCTAATAGTTATAAGT
ATTTAAACAAATATTAATC
Found at i:38280 original size:20 final size:18
Alignment explanation
Indices: 38255--38304 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
38245 ATAATTCTTT
38255 AAATTATTTTAAAATAATTA
1 AAATTA-TTT-AAATAATTA
*
38275 AAATTATTTATATAATTA
1 AAATTATTTAAATAATTA
*
38293 AAATTAATTAAA
1 AAATTATTTAAA
38305 ATTAACTGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
18 18 0.67
19 3 0.11
20 6 0.22
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
AAATTATTTAAATAATTA
Found at i:38302 original size:10 final size:10
Alignment explanation
Indices: 38263--38323 Score: 56
Period size: 10 Copynumber: 6.4 Consensus size: 10
38253 TTAAATTATT
38263 TTAAAA-TAA
1 TTAAAATTAA
38272 TTAAAATT-A
1 TTAAAATTAA
* *
38281 TTTATA-TAA
1 TTAAAATTAA
38290 TTAAAATTAA
1 TTAAAATTAA
38300 TTAAAATTAA
1 TTAAAATTAA
* * *
38310 CTGAATTTAA
1 TTAAAATTAA
38320 TTAA
1 TTAA
38324 TTATTTTGGA
Statistics
Matches: 40, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
8 1 0.03
9 16 0.40
10 23 0.57
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (10 bp):
TTAAAATTAA
Found at i:40040 original size:181 final size:175
Alignment explanation
Indices: 39659--40095 Score: 498
Period size: 181 Copynumber: 2.4 Consensus size: 175
39649 AATAAGATAT
* * * * *
39659 TATTTCAAATCATTATCACCTTTTGTTTGGTCATATAACAATTGTTT-TTTATCATACATGATTA
1 TATTTCAAATCATTATAACCTTTTGTTT-GTCATAAAACAATT-TTTCTAT-TCATACAAGCTTA
* * * * * *
39723 TTCGAAATAAAATAATAATAATTTATTAATCTTTCAAAAATTAATAAGAGATTTAAAAAATGAAT
63 TTCGAAATAAAATAATAATAATCTAATAATATTCCAAAAAATAATAAGAGATTTAAAAAATAAAT
* * *
39788 CTATTTACCGAACCAATTCAAATAGTTATGACTATTTGAACAATTCTA
128 CTATTTACCGAACCAATTCAAATAGTTAAGACTATATGAACAATTATA
* * *
39836 TACTTCAAATCATTATAACCTTTTGTTATGTTATAAAACAATTATTTCTGTTCATACAAGCTTAT
1 TATTTCAAATCATTATAACCTTTTGTT-TGTCATAAAACAATT-TTTCTATTCATACAAGCTTAT
* * *
39901 TCAAAATAAAATAATACTAATCTAATAATATTCCAGAAATGAATAACTAAGGGATTTAAAAAATA
64 TCGAAATAAAATAATAATAATCTAATAATATTCCA-AAA--AATAA-TAAGAGATTTAAAAAATA
* * * *
39966 AATTTGTTTGCCGAACCAATTCAAATAGTTAAGACTATATGAACAATTATC
125 AATCTATTTACCGAACCAATTCAAATAGTTAAGACTATATGAACAATTATA
** * * * *
40017 TATTTCAAATTGTTATGACCTTTTGTCTTGTCATAAAATAATTTTCTCAATTCATACTAGCTTAT
1 TATTTCAAATCATTATAACCTTTTGT-TTGTCATAAAACAATTTT-TCTATTCATACAAGCTTAT
40082 TCGAAATAAAATAA
64 TCGAAATAAAATAA
40096 AATGAATTTA
Statistics
Matches: 218, Mismatches: 34, Indels: 12
0.83 0.13 0.05
Matches are distributed among these distances:
177 81 0.37
178 6 0.03
180 6 0.03
181 124 0.57
182 1 0.00
ACGTcount: A:0.41, C:0.13, G:0.08, T:0.39
Consensus pattern (175 bp):
TATTTCAAATCATTATAACCTTTTGTTTGTCATAAAACAATTTTTCTATTCATACAAGCTTATTC
GAAATAAAATAATAATAATCTAATAATATTCCAAAAAATAATAAGAGATTTAAAAAATAAATCTA
TTTACCGAACCAATTCAAATAGTTAAGACTATATGAACAATTATA
Found at i:40497 original size:18 final size:17
Alignment explanation
Indices: 40451--40499 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 17
40441 ATAGAGATTG
40451 TAATATTAATAA-TTTA
1 TAATATTAATAATTTTA
*
40467 -AATAGTAACTAATTTTA
1 TAATATTAA-TAATTTTA
40484 TAATAATTAATAATTT
1 TAAT-ATTAATAATTT
40500 AAATATCTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 7 0.26
16 3 0.11
17 4 0.15
18 9 0.33
19 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (17 bp):
TAATATTAATAATTTTA
Found at i:40707 original size:22 final size:22
Alignment explanation
Indices: 40679--40729 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 22
40669 TTTATTAATC
*
40679 TATAATTA-TAATTATGATTATT
1 TATAATTAGTAA-TATGATTATA
*
40701 TATAATTAGTAATATTATTATA
1 TATAATTAGTAATATGATTATA
40723 TA-AATTA
1 TATAATTA
40730 ATTAACTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 5 0.19
22 18 0.69
23 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
TATAATTAGTAATATGATTATA
Found at i:40897 original size:8 final size:9
Alignment explanation
Indices: 40880--40968 Score: 59
Period size: 9 Copynumber: 10.3 Consensus size: 9
40870 ATAATTATTT
40880 TATA-AATA
1 TATATAATA
40888 -ATATAATA
1 TATATAATA
40896 -ATATACATA
1 TATATA-ATA
40905 TATATAATA
1 TATATAATA
40914 TATATAGATA
1 TATATA-ATA
* *
40924 TATTTATTA
1 TATATAATA
*
40933 T-TATATTTA
1 TATATA-ATA
40942 TATATTAA-A
1 TATA-TAATA
40951 TATA-AAT-
1 TATATAATA
40958 TA-ATAATA
1 TATATAATA
40966 TAT
1 TAT
40969 GTTTAAATAA
Statistics
Matches: 66, Mismatches: 4, Indels: 21
0.73 0.04 0.23
Matches are distributed among these distances:
6 1 0.02
7 10 0.15
8 14 0.21
9 24 0.36
10 15 0.23
11 2 0.03
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (9 bp):
TATATAATA
Found at i:40906 original size:23 final size:25
Alignment explanation
Indices: 40880--40925 Score: 69
Period size: 23 Copynumber: 1.9 Consensus size: 25
40870 ATAATTATTT
40880 TATAAATAATATA-ATA-ATATACA
1 TATAAATAATATATATAGATATACA
*
40903 TATATATAATATATATAGATATA
1 TATAAATAATATATATAGATATA
40926 TTTATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 12 0.60
24 3 0.15
25 5 0.25
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
TATAAATAATATATATAGATATACA
Found at i:40913 original size:15 final size:14
Alignment explanation
Indices: 40880--40925 Score: 51
Period size: 15 Copynumber: 3.3 Consensus size: 14
40870 ATAATTATTT
40880 TATAA-ATAATATA
1 TATAATATAATATA
40893 -ATAATATACATATA
1 TATAATATA-ATATA
*
40907 TATAATATATATAGA
1 TATAATATA-ATATA
40922 TATA
1 TATA
40926 TTTATTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 4 0.14
13 3 0.11
14 5 0.18
15 16 0.57
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (14 bp):
TATAATATAATATA
Found at i:40967 original size:59 final size:59
Alignment explanation
Indices: 40837--40968 Score: 139
Period size: 59 Copynumber: 2.2 Consensus size: 59
40827 TATATTAGTT
* * *
40837 ATTAGATAATA-ACTAATATATATTGTTATATTTATAATTATTTTATAAATAATATAATA
1 ATTACATAATATA-TAATATATATAGATATATTTATAATTATTTTATAAATAATATAATA
* *
40896 ATATACAT-ATATATAATATATATAGATATATTTATTATTATATTTATATATTAA-AT-ATAA
1 AT-TACATAATATATAATATATATAGATATATTTATAATTAT-TTTATA-AATAATATAAT-A
40956 ATTA-ATAATATAT
1 ATTACATAATATAT
40969 GTTTAAATAA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
58 2 0.03
59 40 0.65
60 16 0.26
61 4 0.06
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (59 bp):
ATTACATAATATATAATATATATAGATATATTTATAATTATTTTATAAATAATATAATA
Found at i:40993 original size:19 final size:19
Alignment explanation
Indices: 40941--40996 Score: 55
Period size: 19 Copynumber: 3.0 Consensus size: 19
40931 TATTATATTT
*
40941 ATATATTAAATA-TAAATTA
1 ATATATTAAGTATTAAA-TA
*
40960 ATA-ATATATGT-TTAAATA
1 ATATAT-TAAGTATTAAATA
40978 ATATATTAAGTATTAAATA
1 ATATATTAAGTATTAAATA
40997 TAATAATACT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
18 11 0.37
19 19 0.63
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.43
Consensus pattern (19 bp):
ATATATTAAGTATTAAATA
Found at i:41108 original size:29 final size:28
Alignment explanation
Indices: 41076--41141 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 28
41066 GACTATTTTA
41076 ATTAATTAAAGATAATCATTATTAGTATT
1 ATTAATTAAAGATAAT-ATTATTAGTATT
**
41105 ATTAGGA-TAATTATAATATTATTAGTATT
1 ATTA--ATTAAAGATAATATTATTAGTATT
*
41134 ATAAATTA
1 ATTAATTA
41142 TTAAAATAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
27 1 0.03
28 2 0.06
29 19 0.61
30 8 0.26
31 1 0.03
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (28 bp):
ATTAATTAAAGATAATATTATTAGTATT
Found at i:41925 original size:30 final size:31
Alignment explanation
Indices: 41883--41942 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
41873 ATTGCTTGGA
41883 TAAATTTAAATAAATAATTTACT-AATTTAT
1 TAAATTTAAATAAATAATTTACTAAATTTAT
* *
41913 TAAAGTTT-AATAAGTAATTTATTAAATTTA
1 TAAA-TTTAAATAAATAATTTACTAAATTTA
41943 ATTGTTATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 17 0.65
31 9 0.35
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (31 bp):
TAAATTTAAATAAATAATTTACTAAATTTAT
Found at i:44086 original size:12 final size:12
Alignment explanation
Indices: 44069--44093 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
44059 AGTATACTAT
44069 ATAATTAAATTA
1 ATAATTAAATTA
44081 ATAATTAAATTA
1 ATAATTAAATTA
44093 A
1 A
44094 AAACTAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAATTAAATTA
Found at i:44145 original size:11 final size:11
Alignment explanation
Indices: 44103--44153 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
44093 AAAACTAATA
*
44103 ATAATTA-TAA
1 ATAATTATTAT
44113 ATAA-TATTAT
1 ATAATTATTAT
44123 ATAATTATTTAT
1 ATAATTA-TTAT
**
44135 ATTTTTATTAT
1 ATAATTATTAT
44146 ATAATTAT
1 ATAATTAT
44154 AACTTAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
9 2 0.06
10 10 0.30
11 12 0.36
12 9 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
ATAATTATTAT
Found at i:44195 original size:44 final size:43
Alignment explanation
Indices: 44103--44195 Score: 109
Period size: 44 Copynumber: 2.1 Consensus size: 43
44093 AAAACTAATA
* **
44103 ATAATTATAAATAATATTATATAATTATTTATATTTTTATTAT
1 ATAATTATAAATAATATTATATAATTATTTATAGTTAAATTAT
*
44146 ATAATTATAACTTAATATT-TAATAATTATTTTATAGTTAAATTAT
1 ATAATTATAA-ATAATATTAT-ATAATTA-TTTATAGTTAAATTAT
44191 -TAATT
1 ATAATT
44196 TTCATTTAGT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
43 11 0.26
44 19 0.44
45 13 0.30
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (43 bp):
ATAATTATAAATAATATTATATAATTATTTATAGTTAAATTAT
Found at i:44387 original size:26 final size:26
Alignment explanation
Indices: 44356--44405 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
44346 TAGATCTAAT
*
44356 TAATTATTAAT-AAATTAATTATTTTA
1 TAATTAATAATGAAATT-ATTATTTTA
*
44382 TAATTAATAATGATATTATTATTT
1 TAATTAATAATGAAATTATTATTT
44406 AAATTGATAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (26 bp):
TAATTAATAATGAAATTATTATTTTA
Found at i:44665 original size:11 final size:11
Alignment explanation
Indices: 44651--44689 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
44641 TTATCAATAG
44651 TATAATTATAA
1 TATAATTATAA
*
44662 TATATTTTATAA
1 TATA-ATTATAA
*
44674 TATAAATATAA
1 TATAATTATAA
44685 TATAA
1 TATAA
44690 GGTAATTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 14 0.58
12 10 0.42
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TATAATTATAA
Found at i:44782 original size:11 final size:10
Alignment explanation
Indices: 44766--44798 Score: 50
Period size: 9 Copynumber: 3.3 Consensus size: 10
44756 TAATAATAAG
44766 TTATAATATTA
1 TTATAATA-TA
44777 TTATAATATA
1 TTATAATATA
44787 -TATAATATA
1 TTATAATATA
44796 TTA
1 TTA
44799 ATAAATAATC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 9 0.43
10 4 0.19
11 8 0.38
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
TTATAATATA
Found at i:44895 original size:13 final size:12
Alignment explanation
Indices: 44879--44920 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
44869 CTTGTTAAAA
44879 TAATTAACATTAT
1 TAATTAA-ATTAT
*
44892 TAATT-AATTAA
1 TAATTAAATTAT
44903 TAATTAATATTAT
1 TAATTAA-ATTAT
44916 TAATT
1 TAATT
44921 CATTAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 9 0.36
12 2 0.08
13 14 0.56
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (12 bp):
TAATTAAATTAT
Found at i:44904 original size:24 final size:24
Alignment explanation
Indices: 44877--44927 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
44867 AACTTGTTAA
44877 AATAATTAACATTATTAATTAATT
1 AATAATTAACATTATTAATTAATT
* *
44901 AATAATTAATATTATTAATTCATT
1 AATAATTAACATTATTAATTAATT
44925 AAT
1 AAT
44928 TATGATACTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (24 bp):
AATAATTAACATTATTAATTAATT
Found at i:45282 original size:14 final size:14
Alignment explanation
Indices: 45263--45290 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
45253 TAAATAATTA
45263 ATTATATAATATTT
1 ATTATATAATATTT
45277 ATTATATAATATTT
1 ATTATATAATATTT
45291 TAATAATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTATATAATATTT
Found at i:45580 original size:180 final size:181
Alignment explanation
Indices: 45301--45642 Score: 402
Period size: 180 Copynumber: 1.9 Consensus size: 181
45291 TAATAATAAA
** * * ** *
45301 TTATATATTTAAAATCATTATGACCTTTTGTTTTATCATAAAACAATTGTTTTTGTTTAAACAAG
1 TTATATATTTAAAATCATTATGACCAATTGTTTCATCATAAAACAATTGTATAAGTTCAAACAAG
* ** * *
45366 CTTATTCAAACTAAAATAATATTAATTAATTAATATTTTGACAATTAAT-AATAAAAAATTTTAA
66 CTTATTCAAACTAAAATAATACTAATTAATTAATATTTCAAAAATTAATGAATAAAAAATTTAAA
* *
45430 AAATAAATATGTTTA-CAGAGAAAGTTCAAATACTCTTAACTATTTGAATAT
131 AAATAAATATATTTATC-GAAAAAGTTCAAATACTCTTAACTATTTGAATAT
* * * * * * *
45481 TTATCTATTTCAAATCGTTATGATCAATTGTTTCATCATAAAACAATTGTATAAGTTCATATAGG
1 TTATATATTTAAAATCATTATGACCAATTGTTTCATCATAAAACAATTGTATAAGTTCAAACAAG
* * * * *
45546 CTTATTTGAAA-TAAAATGATACTAATTTATTAATATTTCAAAAATTAATGAGTAAAAGATTTAA
66 CTTA-TTCAAACTAAAATAATACTAATTAATTAATATTTCAAAAATTAATGAATAAAAAATTTAA
*
45610 AAAATGAATATATTTATCGAAAAAGTTCAAATA
130 AAAATAAATATATTTATCGAAAAAGTTCAAATA
45643 GTTATGACTA
Statistics
Matches: 132, Mismatches: 27, Indels: 5
0.80 0.16 0.03
Matches are distributed among these distances:
180 87 0.66
181 44 0.33
182 1 0.01
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (181 bp):
TTATATATTTAAAATCATTATGACCAATTGTTTCATCATAAAACAATTGTATAAGTTCAAACAAG
CTTATTCAAACTAAAATAATACTAATTAATTAATATTTCAAAAATTAATGAATAAAAAATTTAAA
AAATAAATATATTTATCGAAAAAGTTCAAATACTCTTAACTATTTGAATAT
Found at i:45832 original size:18 final size:18
Alignment explanation
Indices: 45809--45848 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
45799 ATTAATATAT
*
45809 TTATAATTATATAATACA
1 TTATAATAATATAATACA
* *
45827 TTATAATAATATTATATA
1 TTATAATAATATAATACA
45845 TTAT
1 TTAT
45849 TAACTATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (18 bp):
TTATAATAATATAATACA
Found at i:45892 original size:32 final size:31
Alignment explanation
Indices: 45826--45891 Score: 84
Period size: 32 Copynumber: 2.2 Consensus size: 31
45816 TATATAATAC
45826 ATTATAATAATATTATATATTATTAACTATTT
1 ATTATAATAATA-TATATATTATTAACTATTT
*
45858 ATTATAATAATA-ACTTTATTA-TAACTA-TT
1 ATTATAATAATATA-TATATTATTAACTATTT
45887 ATTAT
1 ATTAT
45892 TTTTGTATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
29 7 0.22
30 7 0.22
31 6 0.19
32 12 0.38
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.52
Consensus pattern (31 bp):
ATTATAATAATATATATATTATTAACTATTT
Found at i:45984 original size:40 final size:39
Alignment explanation
Indices: 45843--45985 Score: 107
Period size: 40 Copynumber: 3.6 Consensus size: 39
45833 TAATATTATA
* * *
45843 TATTATTAACTATTTATT-ATAATAATAACTTTATTATAAC
1 TATTATTAAAT-TTTATTAATAATAATTA-TTTATTACAAC
* * * *
45883 TATTATT-ATTTTTGTATAATAATATTTATTTATTACAAA
1 TATTATTAAATTTTAT-TAATAATAATTATTTATTACAAC
45922 TAATTA-TACAATTAATTA-TAATAATAATTATTTATATA-AAC
1 T-ATTATTA-AATT--TTATTAATAATAATTATTTAT-TACAAC
45963 TATTATTAAATTGTTATTAATAA
1 TATTATTAAATT-TTATTAATAA
45986 ATTATATAAT
Statistics
Matches: 82, Mismatches: 11, Indels: 20
0.73 0.10 0.18
Matches are distributed among these distances:
38 4 0.05
39 17 0.21
40 33 0.40
41 24 0.29
42 2 0.02
43 2 0.02
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.50
Consensus pattern (39 bp):
TATTATTAAATTTTATTAATAATAATTATTTATTACAAC
Found at i:46352 original size:32 final size:30
Alignment explanation
Indices: 46290--46368 Score: 83
Period size: 32 Copynumber: 2.6 Consensus size: 30
46280 ATTCATAAAT
*
46290 TTATAATTATAAT--AATACTAAATTATTA
1 TTATAATTATAATAAAATACTAAATTACTA
*
46318 TTATAACTTATAATAAAATAACTTAATTACTA
1 TTATAA-TTATAATAAAAT-ACTAAATTACTA
46350 TTAATAATTA-AATTAAAAT
1 TT-ATAATTATAA-TAAAAT
46369 TAAAATATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
28 6 0.14
29 7 0.16
31 5 0.12
32 21 0.49
33 4 0.09
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (30 bp):
TTATAATTATAATAAAATACTAAATTACTA
Found at i:46374 original size:12 final size:12
Alignment explanation
Indices: 46349--46432 Score: 50
Period size: 11 Copynumber: 7.0 Consensus size: 12
46339 CTTAATTACT
46349 ATTAATAATTAA
1 ATTAATAATTAA
46361 ATTAA-AATTAA
1 ATTAATAATTAA
* *
46372 AAT-ATAATTAT
1 ATTAATAATTAA
* *
46383 ATCAAATAATTTA
1 AT-TAATAATTAA
46396 ATT-ATAACTTATA
1 ATTAATAA-TTA-A
*
46409 ATTAATCA-TAA
1 ATTAATAATTAA
*
46420 TATTAATAGTTAA
1 -ATTAATAATTAA
46433 TAGTTATTAT
Statistics
Matches: 53, Mismatches: 11, Indels: 15
0.67 0.14 0.19
Matches are distributed among these distances:
10 1 0.02
11 19 0.36
12 15 0.28
13 15 0.28
14 3 0.06
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (12 bp):
ATTAATAATTAA
Found at i:46540 original size:18 final size:18
Alignment explanation
Indices: 46517--46551 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
46507 GTCCAATTAA
46517 ATTATATAATAAATAATT
1 ATTATATAATAAATAATT
*
46535 ATTATATAATATATAAT
1 ATTATATAATAAATAAT
46552 ATACAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
ATTATATAATAAATAATT
Found at i:46552 original size:25 final size:25
Alignment explanation
Indices: 46519--46584 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
46509 CCAATTAAAT
*
46519 TATATAATAAATAATTATTATATA-A
1 TATATAATAAATAATTATAAT-TACA
* *
46544 TATATAATATACAATTATAATTACA
1 TATATAATAAATAATTATAATTACA
*
46569 TATTATAATAATTAAT
1 TA-TATAATAAATAAT
46585 ATGATTCATA
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
24 2 0.06
25 21 0.64
26 10 0.30
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (25 bp):
TATATAATAAATAATTATAATTACA
Found at i:46564 original size:13 final size:14
Alignment explanation
Indices: 46532--46578 Score: 57
Period size: 13 Copynumber: 3.6 Consensus size: 14
46522 ATAATAAATA
*
46532 ATTATTATATA-AT
1 ATTATAATATACAT
46545 A-TATAATATACA-
1 ATTATAATATACAT
46557 ATTATAAT-TACAT
1 ATTATAATATACAT
46570 ATTATAATA
1 ATTATAATA
46579 ATTAATATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
ATTATAATATACAT
Found at i:46691 original size:18 final size:19
Alignment explanation
Indices: 46668--46703 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
46658 AATTATTATA
46668 ATAAATAGTAA-TAATATT
1 ATAAATAGTAACTAATATT
*
46686 ATAAATATTAACTAATAT
1 ATAAATAGTAACTAATAT
46704 ATGACTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (19 bp):
ATAAATAGTAACTAATATT
Found at i:47452 original size:13 final size:14
Alignment explanation
Indices: 47415--47455 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
47405 TTAATTTATT
47415 AGTAATTTATTAATA
1 AGTAA-TTATTAATA
*
47430 AGTAA-AATTAATA
1 AGTAATTATTAATA
47443 A-TAATTATTAATA
1 AGTAATTATTAATA
47456 GTTAACATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 3 0.13
13 15 0.65
15 5 0.22
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (14 bp):
AGTAATTATTAATA
Found at i:48138 original size:12 final size:12
Alignment explanation
Indices: 48116--48144 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
48106 ATAAATATTA
48116 TATTA-ATAACT
1 TATTATATAACT
48127 TATTATATAACT
1 TATTATATAACT
48139 TATTAT
1 TATTAT
48145 TTATTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (12 bp):
TATTATATAACT
Found at i:48494 original size:20 final size:18
Alignment explanation
Indices: 48471--48513 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
48461 TAAATTATAT
48471 TATTAATTTAAATATTAATA
1 TATTAA-TT-AATATTAATA
48491 TATTAA-TAATATTAATA
1 TATTAATTAATATTAATA
48508 -ATTAAT
1 TATTAAT
48514 ATTATTATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 10 0.45
18 1 0.05
20 6 0.27
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TATTAATTAATATTAATA
Found at i:48516 original size:45 final size:47
Alignment explanation
Indices: 48452--48539 Score: 121
Period size: 45 Copynumber: 1.9 Consensus size: 47
48442 ATAAATCTAG
48452 TAATATGAATAAATTATATTATTAATTT-A-AATATTAA-TATATTAA
1 TAATATGAATAAATTATATTATT-ATTTGATAATATTAACTATATTAA
*
48497 TAATATTAAT-AATTAATATTATTATTTGATAATATTAACTATA
1 TAATATGAATAAATT-ATATTATTATTTGATAATATTAACTATA
48540 ATGTTGTATT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
44 8 0.21
45 18 0.47
46 8 0.21
47 4 0.11
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (47 bp):
TAATATGAATAAATTATATTATTATTTGATAATATTAACTATATTAA
Found at i:48520 original size:9 final size:8
Alignment explanation
Indices: 48478--48520 Score: 54
Period size: 9 Copynumber: 5.4 Consensus size: 8
48468 TATTATTAAT
48478 TTAA-ATA
1 TTAATATA
48485 TTAATATA
1 TTAATATA
48493 TTAATAATA
1 TTAAT-ATA
48502 TTAATA-A
1 TTAATATA
48509 TTAATATTA
1 TTAATA-TA
48518 TTA
1 TTA
48521 TTTGATAATA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
7 11 0.34
8 9 0.28
9 12 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
TTAATATA
Found at i:48528 original size:29 final size:32
Alignment explanation
Indices: 48467--48534 Score: 88
Period size: 29 Copynumber: 2.2 Consensus size: 32
48457 TGAATAAATT
*
48467 ATATTATTAATTTAAATATTAATATATTAATA
1 ATATTAATAATTTAAATATTAATATATTAATA
* *
48499 ATATTAATAA-TT-AATATTATTAT-TTGATA
1 ATATTAATAATTTAAATATTAATATATTAATA
48528 ATATTAA
1 ATATTAA
48535 CTATAATGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 12 0.36
30 10 0.30
31 2 0.06
32 9 0.27
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (32 bp):
ATATTAATAATTTAAATATTAATATATTAATA
Found at i:48682 original size:14 final size:15
Alignment explanation
Indices: 48644--48699 Score: 55
Period size: 14 Copynumber: 3.8 Consensus size: 15
48634 GACTAGAATA
48644 ATATAA-TATATTATT
1 ATATAATTA-ATTATT
*
48659 CTAATAATTAATTATT
1 AT-ATAATTAATTATT
48675 AT-TAATTAA-TATT
1 ATATAATTAATTATT
*
48688 TTATAATTAATT
1 ATATAATTAATT
48700 TATAATTTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
13 5 0.15
14 14 0.41
15 2 0.06
16 11 0.32
17 2 0.06
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (15 bp):
ATATAATTAATTATT
Found at i:48691 original size:18 final size:19
Alignment explanation
Indices: 48660--48720 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 19
48650 TATATTATTC
48660 TAATAATTAATTATTATTAAT
1 TAATAATT--TTATTATTAAT
*
48681 TAAT-ATTTTATAATTAAT
1 TAATAATTTTATTATTAAT
* *
48699 TTATAATTTATATTATAAAT
1 TAATAATTT-TATTATTAAT
48719 TA
1 TA
48721 TTAAATATAA
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
18 13 0.39
19 4 0.12
20 12 0.36
21 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TAATAATTTTATTATTAAT
Found at i:48750 original size:29 final size:30
Alignment explanation
Indices: 48700--48771 Score: 80
Period size: 29 Copynumber: 2.5 Consensus size: 30
48690 ATAATTAATT
48700 TATAATT--TATATTATAAATTATT-A-AA
1 TATAATTAATATATTATAAATTATTAATAA
* *
48726 TATAATATAATATATTATGATTTATTAATAA
1 TATAAT-TAATATATTATAAATTATTAATAA
*
48757 TATAATTAAAATATT
1 TATAATTAATATATT
48772 TACTTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
26 6 0.16
27 1 0.03
29 14 0.37
30 9 0.24
31 8 0.21
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (30 bp):
TATAATTAATATATTATAAATTATTAATAA
Found at i:49164 original size:8 final size:8
Alignment explanation
Indices: 49153--49179 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
49143 TTTATAAATT
49153 ATATTATA
1 ATATTATA
49161 ATATTATA
1 ATATTATA
49169 ATATTATA
1 ATATTATA
49177 ATA
1 ATA
49180 GTTGATTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
ATATTATA
Found at i:49653 original size:19 final size:20
Alignment explanation
Indices: 49622--49660 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
49612 ATTCAAATAT
49622 TAAATTATAAATAA-TTGAA
1 TAAATTATAAATAACTTGAA
49641 TAAA-TATATAATAACTTGAA
1 TAAATTATA-AATAACTTGAA
49661 GCAGATATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.56, C:0.03, G:0.05, T:0.36
Consensus pattern (20 bp):
TAAATTATAAATAACTTGAA
Found at i:49722 original size:19 final size:20
Alignment explanation
Indices: 49700--49749 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 20
49690 AACTTAATTA
*
49700 TAATATAATTAT-TTAATGT
1 TAATATAATTATATTAATAT
49719 T-A-ATAATTATATTAATAT
1 TAATATAATTATATTAATAT
49737 TAATA-AATTATAT
1 TAATATAATTATAT
49750 ACTATATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 8 0.30
18 8 0.30
19 10 0.37
20 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATATAATTATATTAATAT
Found at i:50157 original size:21 final size:21
Alignment explanation
Indices: 50110--50164 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
50100 ATTTATAATA
50110 AACAATAATTTATTATATTCAT
1 AACAAT-ATTTATTATATTCAT
*
50132 -GCAATATTTATTATACTT-AT
1 AACAATATTTATTATA-TTCAT
50152 AACAATAGTTTAT
1 AACAATA-TTTAT
50165 ATAATAAACT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 12 0.43
21 11 0.39
22 5 0.18
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (21 bp):
AACAATATTTATTATATTCAT
Found at i:50359 original size:17 final size:17
Alignment explanation
Indices: 50337--50389 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
50327 ATATTTATAT
50337 TATATTTTAATTAATTA
1 TATATTTTAATTAATTA
*
50354 TATATTATAATTAAATTA
1 TATATTTTAATT-AATTA
* * *
50372 GAT-TATTATTTAATTA
1 TATATTTTAATTAATTA
50388 TA
1 TA
50390 AAAATTATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (17 bp):
TATATTTTAATTAATTA
Found at i:50360 original size:22 final size:23
Alignment explanation
Indices: 50332--50387 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
50322 TTTAAATATT
* *
50332 TATATTATATTTTAATTA-ATTA
1 TATATTATAATTAAATTAGATTA
50354 TATATTATAATTAAATTAGATTA
1 TATATTATAATTAAATTAGATTA
50377 T-TATT-TAATTA
1 TATATTATAATTA
50388 TAAAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TATATTATAATTAAATTAGATTA
Found at i:50396 original size:17 final size:18
Alignment explanation
Indices: 50376--50409 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
50366 AAATTAGATT
50376 ATTA-TTTAATTATAAAA
1 ATTATTTTAATTATAAAA
*
50393 ATTATTTTAATTTTAAA
1 ATTATTTTAATTATAAA
50410 TTAATAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATTTTAATTATAAAA
Found at i:50422 original size:30 final size:29
Alignment explanation
Indices: 50381--50477 Score: 83
Period size: 29 Copynumber: 3.2 Consensus size: 29
50371 AGATTATTAT
*
50381 TTAATTATAAAAATTATTTTAATTTTAAA
1 TTAATAATAAAAATTATTTTAATTTTAAA
50410 TTAATAAGTAAAAATT-TTAATTAATTTT-AA
1 TTAATAA-TAAAAATTATT--TTAATTTTAAA
* *
50440 TTATATAA-ATAAATTAGATTTAATATTTAAAA
1 TTA-ATAATAAAAATTA-TTTTAAT-TTT-AAA
50472 TTAATA
1 TTAATA
50478 TATATTATAG
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
29 19 0.34
30 16 0.29
31 16 0.29
32 5 0.09
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (29 bp):
TTAATAATAAAAATTATTTTAATTTTAAA
Found at i:51631 original size:360 final size:359
Alignment explanation
Indices: 50963--51633 Score: 788
Period size: 360 Copynumber: 1.9 Consensus size: 359
50953 ACAAAATATC
*
50963 TTTATTTTCTAAAATTTTACTCATTAATTTTTAGAATATTAATAAATTTATATTATTTTATTCAA
1 TTTATTTTCTAAAATTTTACTCATTAATTTTTAGAATATTAATAAATTTAAATTATTTTATTCAA
*
51028 AATACACTTGCATGAACAGAAACAATTGTTTTACAACAAATAAAATGTCATAACAATTTGAAATA
66 AATACACTTGCATGAACAGAAACAATTGGTTTACAACAAATAAAATGTCATAACAATTTGAAATA
* * * * *
51093 GATAATAGTTCAAATGGACATGACTATTTGAATTAGTTAGGTAAACTAATTAATTTTTTAAATCT
131 GATAATAGTTCAAATAGACATAACTATTTGAATTAGTTA-GAAAAATAATTAATTTTTTAAATAT
* * * *
51158 TCAACTTATTAATTTTTAGAATGTTAATATATTAGTACTATTTTATTCCAAATAAACTTGTATGA
195 TCAACTTATTAATTTTTAGAATATTAATAAATTAGTACTATTTTATTCAAAATAAACTTGCATGA
* **
51223 ATAGAAACAATTGTTTTATAACAAAACAAAAGATTGTAACGATTTGAAATAAATAATTATTCAAA
260 ACAGAAACAATTGTTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTATTCAAA
51288 CAACCATAACTATTTGAACTCACTCGGTAAATAAA
325 CAACCATAACTATTTGAACTCACTCGGTAAATAAA
* * * * * *
51323 TTTATTTTTTAAATCTTTTATTTATTAA-TTTTGGAATATTAATTAA-TTAGAATTATTTTATTC
1 TTTATTTTCTAAA-ATTTTACTCATTAATTTTTAGAATATTAATAAATTTA-AATTATTTTATTC
* ** * ** **
51386 CAAATA-AGCTTGTTTGAATAGAAACAATTGGTTTATGACAAA-ACAAATGGTCATAATGATTTG
64 AAAATACA-CTTGCATGAACAGAAACAATTGGTTTACAACAAATA-AAAT-GTCATAACAATTTG
* * * *
51449 AAATAGATAATTGTTCAAATAGTCATAACTATTTGAATGT-GTTCA-AAAAATAGCTTTATTTTT
126 AAATAGATAATAGTTCAAATAGACATAACTATTTGAAT-TAGTT-AGAAAAATA-ATTAATTTTT
* *
51512 TAAA-ATT-ATACTTATTAATTTTT-GAAATATTAATAAATTTA-TATTATTTTATTCAAAATAT
188 TAAATATTCA-ACTTATTAATTTTTAG-AATATTAATAAA-TTAGTACTATTTTATTCAAAATAA
* * * * * *
51573 GCTTGCATGAACAGAACCGATTGTTTTATGACAAAACAAAATG-TCATAATGTTTTGAAATA
250 ACTTGCATGAACAGAAACAATTGTTTTATAACAAAACAAAA-GATCATAACGATTTGAAATA
51634 GATTATTGTT
Statistics
Matches: 259, Mismatches: 40, Indels: 24
0.80 0.12 0.07
Matches are distributed among these distances:
359 7 0.03
360 174 0.67
361 76 0.29
362 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (359 bp):
TTTATTTTCTAAAATTTTACTCATTAATTTTTAGAATATTAATAAATTTAAATTATTTTATTCAA
AATACACTTGCATGAACAGAAACAATTGGTTTACAACAAATAAAATGTCATAACAATTTGAAATA
GATAATAGTTCAAATAGACATAACTATTTGAATTAGTTAGAAAAATAATTAATTTTTTAAATATT
CAACTTATTAATTTTTAGAATATTAATAAATTAGTACTATTTTATTCAAAATAAACTTGCATGAA
CAGAAACAATTGTTTTATAACAAAACAAAAGATCATAACGATTTGAAATAAATAATTATTCAAAC
AACCATAACTATTTGAACTCACTCGGTAAATAAA
Found at i:51692 original size:180 final size:181
Alignment explanation
Indices: 50963--51692 Score: 675
Period size: 180 Copynumber: 4.1 Consensus size: 181
50953 ACAAAATATC
* * *
50963 TTTATTTTCTAAA-ATTTTACTCATTAATTTTTAGAATATTAATAAATTTA-TATTATTTTATTC
1 TTTATTTTTTAAATATTATACTTATTAATTTTTAGAATATTAATAAA-TTAGTATTATTTTATTC
* * * *
51026 AAAATACACTTGCATGAACAGAAACAATTGTTTTACAAC-AAATAAAATGTCATAACAATTTGAA
65 AAAATAAACTTGCATGAACAGAAACAATTGTTTTATAACAAAACAAAATGTCATAACGATTTGAA
* * * * * * *
51090 ATAGATAATAGTTCAAATGGACATGACTATTTGAATT-AGTTAGGTAAACTAA
130 ATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGACTT-GATAAACAAA
* * * * *
51142 TTAATTTTTTAAATCTTCA-ACTTATTAATTTTTAGAATGTTAATATATTAGTACTATTTTATTC
1 TTTATTTTTTAAATATT-ATACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTC
* * * **
51206 CAAATAAACTTGTATGAATAGAAACAATTGTTTTATAACAAAACAAAA-GATTGTAACGATTTGA
65 AAAATAAACTTGCATGAACAGAAACAATTGTTTTATAACAAAACAAAATG-TCATAACGATTTGA
* * * ** * * * * *
51270 AATAAATAATTATTCAAACAACCATAACTATTTGAACTCACTCGGTAAATAAA
129 AATAGATAATTGTTCAAATAGTCATAACTATTTGAATTGACTTGATAAACAAA
* * * * * * *
51323 TTTATTTTTTAAATCTTTTATTTATTAA-TTTTGGAATATTAATTAATTAGAATTATTTTATTCC
1 TTTATTTTTTAAATATTATACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCA
* ** * * * *
51387 AAATAAGCTTGTTTGAATAGAAACAATTGGTTTATGACAAAAC-AAATGGTCATAATGATTTGAA
66 AAATAAACTTGCATGAACAGAAACAATTGTTTTATAACAAAACAAAAT-GTCATAACGATTTGAA
*
51451 ATAGATAATTGTTCAAATAGTCATAACTATTTGAATGTG--TTCA-AAA-AATA
130 ATAGATAATTGTTCAAATAGTCATAACTATTTGAAT-TGACTTGATAAACAA-A
51501 GCTTTATTTTTTAAA-ATTATACTTATTAATTTTT-GAAATATTAATAAATTTA-TATTATTTTA
1 --TTTATTTTTTAAATATTATACTTATTAATTTTTAG-AATATTAATAAA-TTAGTATTATTTTA
** * * * * *
51563 TTCAAAATATGCTTGCATGAACAGAACCGATTGTTTTATGACAAAACAAAATGTCATAATGTTTT
62 TTCAAAATAAACTTGCATGAACAGAAACAATTGTTTTATAACAAAACAAAATGTCATAACGATTT
* * * *
51628 GAAATAGATTATTGTTTAGATAGTCATAACTATTTCAACTTGA-TTGATAAGA-AAA
127 GAAATAGATAATTGTTCAAATAGTCATAACTATTTGAA-TTGACTTGATAA-ACAAA
*
51683 TTCATTTTTT
1 TTTATTTTTT
51693 TAATTCTATT
Statistics
Matches: 454, Mismatches: 76, Indels: 41
0.80 0.13 0.07
Matches are distributed among these distances:
177 2 0.00
178 4 0.01
179 30 0.07
180 318 0.70
181 92 0.20
182 5 0.01
183 3 0.01
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (181 bp):
TTTATTTTTTAAATATTATACTTATTAATTTTTAGAATATTAATAAATTAGTATTATTTTATTCA
AAATAAACTTGCATGAACAGAAACAATTGTTTTATAACAAAACAAAATGTCATAACGATTTGAAA
TAGATAATTGTTCAAATAGTCATAACTATTTGAATTGACTTGATAAACAAA
Found at i:52301 original size:27 final size:26
Alignment explanation
Indices: 52266--52316 Score: 84
Period size: 27 Copynumber: 1.9 Consensus size: 26
52256 ATAATATTTG
52266 ATTTATAGTATAATATAATATTATATA
1 ATTTATAGTATAATATAA-ATTATATA
*
52293 ATTTATAGTTTAATATAAATTATA
1 ATTTATAGTATAATATAAATTATA
52317 AGTACAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (26 bp):
ATTTATAGTATAATATAAATTATATA
Found at i:52397 original size:18 final size:18
Alignment explanation
Indices: 52376--52410 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
52366 TTAATCATTG
*
52376 TTAATTAATATTTTATAA
1 TTAATTAATAATTTATAA
*
52394 TTAATTTATAATTTATA
1 TTAATTAATAATTTATA
52411 TTATAAATCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAATTAATAATTTATAA
Found at i:53173 original size:27 final size:26
Alignment explanation
Indices: 53143--53209 Score: 73
Period size: 28 Copynumber: 2.5 Consensus size: 26
53133 TATCAAGACT
*
53143 TAATATTAAT-TAGTATATTAATTTAAA
1 TAATATTAATATA-TATATAAATTT-AA
53170 TAATAATTAATCATATATATAAATTTAA
1 TAAT-ATTAAT-ATATATATAAATTTAA
*
53198 TATTATTAATAT
1 TAATATTAATAT
53210 TTTAAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
26 2 0.06
27 10 0.29
28 11 0.31
29 10 0.29
30 2 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (26 bp):
TAATATTAATATATATATAAATTTAA
Found at i:53718 original size:16 final size:17
Alignment explanation
Indices: 53694--53726 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
53684 TGTTACTATG
*
53694 TTAATTTAA-ATTTATT
1 TTAAATTAATATTTATT
53710 TTAAATTAATATTTATT
1 TTAAATTAATATTTATT
53727 AAATAAATCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTAAATTAATATTTATT
Found at i:53962 original size:28 final size:27
Alignment explanation
Indices: 53910--53962 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
53900 TATTTAAATA
*
53910 TTATTAACTTATATAATATATAATATT
1 TTATTAACTTATATAATATAAAATATT
*
53937 TTATATAATTTATA-AATTATAAAATA
1 TTAT-TAACTTATATAA-TATAAAATA
53963 ATACAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 6 0.27
28 16 0.73
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (27 bp):
TTATTAACTTATATAATATAAAATATT
Found at i:54005 original size:33 final size:31
Alignment explanation
Indices: 53922--54005 Score: 80
Period size: 33 Copynumber: 2.6 Consensus size: 31
53912 ATTAACTTAT
* **
53922 ATAATATATAATATT-TTATATAATTTATAA
1 ATAATAAATAATATTATTATATAAACTATAA
* **
53952 ATTATAAAATAATACAATTATATTTAAACTATAA
1 ATAAT-AAATAATATTATTATA--TAAACTATAA
53986 ATAATAAATAATATTATTAT
1 ATAATAAATAATATTATTAT
54006 TTAATATATT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
30 4 0.10
31 7 0.17
32 5 0.12
33 13 0.32
34 12 0.29
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (31 bp):
ATAATAAATAATATTATTATATAAACTATAA
Found at i:54253 original size:9 final size:9
Alignment explanation
Indices: 54216--54259 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
54206 ATACTTTAAT
54216 ATAATTATA
1 ATAATTATA
*
54225 ATTATTATA
1 ATAATTATA
*
54234 ATTATT-TA
1 ATAATTATA
54242 ATAATTATA
1 ATAATTATA
*
54251 ATAAATATA
1 ATAATTATA
54260 TAAATTAGTA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
8 7 0.23
9 24 0.77
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (9 bp):
ATAATTATA
Found at i:54371 original size:37 final size:34
Alignment explanation
Indices: 54317--54397 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 34
54307 AAAATAATTA
54317 ATAGTTATTTATAGTTTA-TAAAATAATTATTATAACT
1 ATAG-TATTTATAGTTTATTAAAAT-ATT-TTATAA-T
* *
54354 ATAGTATTTAATTGTTTATTATAATATTTTATAAT
1 ATAGTATTT-ATAGTTTATTAAAATATTTTATAAT
54389 ATATGTATT
1 ATA-GTATT
54398 ATTAATAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
35 4 0.10
36 16 0.41
37 14 0.36
38 5 0.13
ACGTcount: A:0.40, C:0.01, G:0.06, T:0.53
Consensus pattern (34 bp):
ATAGTATTTATAGTTTATTAAAATATTTTATAAT
Found at i:54467 original size:16 final size:16
Alignment explanation
Indices: 54448--54495 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
54438 TTATTCATAA
54448 AACTAATTATAATTAT
1 AACTAATTATAATTAT
54464 AACTAATTATTAATTA-
1 AACTAATTA-TAATTAT
*
54480 AA-T-ATTTTAATTAT
1 AACTAATTATAATTAT
54494 AA
1 AA
54496 AATATTAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
13 6 0.21
14 5 0.17
15 1 0.03
16 11 0.38
17 6 0.21
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (16 bp):
AACTAATTATAATTAT
Found at i:54505 original size:14 final size:14
Alignment explanation
Indices: 54457--54521 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
54447 AAACTAATTA
54457 TAATTATAACTAATTAT
1 TAATTATAA--AA-TAT
* *
54474 TAATTA-AATATTT
1 TAATTATAAAATAT
54487 TAATTATAAAATAT
1 TAATTATAAAATAT
*
54501 TAATTA-ATAATAAT
1 TAATTATAAAAT-AT
54515 TAATTAT
1 TAATTAT
54522 TATCATAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
13 12 0.30
14 20 0.50
16 2 0.05
17 6 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.48
Consensus pattern (14 bp):
TAATTATAAAATAT
Found at i:54710 original size:8 final size:8
Alignment explanation
Indices: 54682--54743 Score: 54
Period size: 8 Copynumber: 7.2 Consensus size: 8
54672 CTATTATAGT
54682 TAATATTA
1 TAATATTA
*
54690 TCAA-ATAA
1 T-AATATTA
54698 TAATATTA
1 TAATATTA
54706 TAATAGTTA
1 TAATA-TTA
54715 TAATATTA
1 TAATATTA
54723 TCAAGTTATTA
1 T-AA--TATTA
*
54734 TACTATTA
1 TAATATTA
54742 TA
1 TA
54744 TATAAAATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
7 2 0.04
8 24 0.53
9 12 0.27
10 1 0.02
11 6 0.13
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (8 bp):
TAATATTA
Found at i:54731 original size:16 final size:16
Alignment explanation
Indices: 54682--54731 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
54672 CTATTATAGT
* *
54682 TAATATTATCAAATAA
1 TAATATTATCAAGTTA
*
54698 TAATATTATAATAGTTA
1 TAATATTATCA-AGTTA
54715 TAATATTATCAAGTTA
1 TAATATTATCAAGTTA
54731 T
1 T
54732 TATACTATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
16 16 0.55
17 13 0.45
ACGTcount: A:0.48, C:0.04, G:0.04, T:0.44
Consensus pattern (16 bp):
TAATATTATCAAGTTA
Found at i:54838 original size:17 final size:16
Alignment explanation
Indices: 54818--54856 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
54808 ATATACAATA
*
54818 TAATAATATAATATTAT
1 TAATAAGATAAT-TTAT
54835 TAATTAAGATAATTTAT
1 TAA-TAAGATAATTTAT
54852 TAATA
1 TAATA
54857 GCATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 2 0.10
17 10 0.50
18 8 0.40
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (16 bp):
TAATAAGATAATTTAT
Found at i:54928 original size:19 final size:18
Alignment explanation
Indices: 54885--54964 Score: 76
Period size: 17 Copynumber: 4.4 Consensus size: 18
54875 TTATTCTTAA
*
54885 ATATTTAATAGAA-TATTT
1 ATATTTAATA-AATTAATT
54903 A-ATTTAATTAAATTAATT
1 ATATTTAA-TAAATTAATT
*
54921 ATATTTAAT-AATTAAAT
1 ATATTTAATAAATTAATT
*
54938 ATACTTTAAGAAATTAATT
1 ATA-TTTAATAAATTAATT
*
54957 ATAATTAA
1 ATATTTAA
54965 AGGTTATTAA
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
17 18 0.35
18 18 0.35
19 16 0.31
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (18 bp):
ATATTTAATAAATTAATT
Found at i:55047 original size:15 final size:15
Alignment explanation
Indices: 55008--55061 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
54998 TGATTATTTA
55008 AAAT-TATT-ATATT
1 AAATATATTAATATT
*
55021 AAA-AAATATAATATT
1 AAATATAT-TAATATT
*
55036 AATTATATTAATATT
1 AAATATATTAATATT
55051 AAATATATTAA
1 AAATATATTAA
55062 ATTGTTAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 5 0.15
14 1 0.03
15 24 0.73
16 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AAATATATTAATATT
Found at i:55132 original size:26 final size:24
Alignment explanation
Indices: 55085--55134 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
55075 TATTAATTTT
55085 TTATTAATTATTAATACTAATATA
1 TTATTAATTATTAATACTAATATA
55109 TTATTATATCTATTAATA-TAA-ATA
1 TTATTA-AT-TATTAATACTAATATA
55133 TT
1 TT
55135 TCACATGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 11 0.46
25 5 0.21
26 8 0.33
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.52
Consensus pattern (24 bp):
TTATTAATTATTAATACTAATATA
Found at i:55258 original size:19 final size:20
Alignment explanation
Indices: 55218--55290 Score: 69
Period size: 19 Copynumber: 3.6 Consensus size: 20
55208 TACTTTATAA
55218 AATAATATTTTATTAATTTATT
1 AATAATA-TTTATTAA-TTATT
55240 AATAATATTTATTAA-TATT
1 AATAATATTTATTAATTATT
* ** *
55259 AATTATATTTTATTTGTTACT
1 AATAATA-TTTATTAATTATT
55280 AAT-ATATTTAT
1 AATAATATTTAT
55291 ATTATATAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
19 15 0.33
20 9 0.20
21 14 0.31
22 7 0.16
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (20 bp):
AATAATATTTATTAATTATT
Found at i:55368 original size:15 final size:16
Alignment explanation
Indices: 55348--55393 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
55338 TAAATAAATT
*
55348 ATATTATTAAT-TTAA
1 ATATTAATAATATTAA
55363 ATATTAATAATATT-A
1 ATATTAATAATATTAA
*
55378 ATAATTAATATTATTA
1 AT-ATTAATAATATTA
55394 TTTGATAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATTAATAATATTAA
Found at i:55733 original size:29 final size:28
Alignment explanation
Indices: 55671--55733 Score: 65
Period size: 29 Copynumber: 2.2 Consensus size: 28
55661 TAAAATTATA
* *
55671 AAATTATAATAATATTAATAAGTAATAG
1 AAATTATAATAATATTAATAAGAAATAC
*
55699 ATAATTA-AATAAATATTATATTAGAAATAC
1 A-AATTATAAT-AATATTA-ATAAGAAATAC
55729 AAATT
1 AAATT
55734 TCTTTAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 4 0.14
29 16 0.55
30 9 0.31
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.37
Consensus pattern (28 bp):
AAATTATAATAATATTAATAAGAAATAC
Found at i:56524 original size:17 final size:17
Alignment explanation
Indices: 56498--56536 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
56488 TCCATAGTGG
56498 TTAT-ATTATATATTTA
1 TTATAATTATATATTTA
56514 TTATAATTATATATTTA
1 TTATAATTATATATTTA
*
56531 TAATAA
1 TTATAA
56537 AATAATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
TTATAATTATATATTTA
Found at i:56630 original size:26 final size:22
Alignment explanation
Indices: 56573--56654 Score: 67
Period size: 26 Copynumber: 3.5 Consensus size: 22
56563 TATTCACATT
* * *
56573 ATATTTAATAATTATAATATAA
1 ATATTTAATTATAAAAATATAA
56595 A-ATTTTAATTATAACAAATATAA
1 ATA-TTTAATTATAA-AAATATAA
*
56618 TATTATTTGAATTAATTAAAATATAA
1 -A-TATTT-AATT-ATAAAAATATAA
56644 ATATTTAATTA
1 ATATTTAATTA
56655 AATTATTATT
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
21 1 0.02
22 11 0.22
23 11 0.22
24 6 0.12
25 4 0.08
26 13 0.27
27 3 0.06
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (22 bp):
ATATTTAATTATAAAAATATAA
Found at i:56687 original size:23 final size:25
Alignment explanation
Indices: 56639--56688 Score: 68
Period size: 23 Copynumber: 2.1 Consensus size: 25
56629 TTAATTAAAA
*
56639 TATAAATATTTAATTAAATTATTAT
1 TATAAATACTTAATTAAATTATTAT
*
56664 TATAAATACTT-A-TAATTTATTAT
1 TATAAATACTTAATTAAATTATTAT
56687 TA
1 TA
56689 ATTATCTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 12 0.52
24 1 0.04
25 10 0.43
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATAAATACTTAATTAAATTATTAT
Found at i:57479 original size:370 final size:360
Alignment explanation
Indices: 56930--57723 Score: 818
Period size: 370 Copynumber: 2.2 Consensus size: 360
56920 GTTTTATGGC
* * * * * * * * * ***
56930 AAAACAAAAGGTCATAATGATTTAAAATAGATAATTGTTCACATAGTCTTAACTACTTAAACCGG
1 AAAACAAAAGGTAATAATGATTTCAAATAAATAATTGATCAAATAGCCATAACTATTTGAACTAA
* * * * * * *
56995 TTC-AGCAAACA-AATTTATTTTTTAAATCTCTTAGTTATTAATTTTCAGAGTATTATTAGATTA
66 TTCGA-TAAACAGAA-TCATTTTTTAAATCACTTACTTATTAATTTTCAGAATATTAATAAATTA
* * *
57058 GTATTATTTTATTTCGAATAAGCTTGTATGAACATGAATAATTATTTTATGACAGAACAAAAATG
129 CTATTATTTTATTTCGAATAAGCTTGTATGAACATGAACAATTATTTTATGACAAAAC-AAAA-G
* * * *
57123 TTTATTTTTTAAAAAACTGATTTAAACTATACATTTGTTCAAATAGTCATAACTATTTAAACGAG
192 GTCA-----T----AA-TGATTTAAA-TAGACAATTGTTCAAATAGTCATAACTATTTAAACGAG
** * * * *
57188 TTTGATAAATAAATTTA-TTTTTTAAATTTCTTACTTATTAACTTTTGAAAGATTAA-TAATTAG
246 TTCAATAAACAAATTAATTTTTTTAAA-CTCTTACTTATTAACTTTTGAAAGATTAAGAAATTAG
57251 TATTATTTTATTTT-G-AAGCTTGTATG-A-T-AAA-AAATAATTGTTATATG
310 TATTATTTTATTTTGGAAAGCTTGTATGAACTGAAACAAAT--TTGTTATATG
* * * *
57298 ACCAAACAAAAGGTAATATTGATTTCAAATAGATAATTGATGAAATAGCCATAATTATTTGAACT
1 A--AAACAAAAGGTAATAATGATTTCAAATAAATAATTGATCAAATAGCCATAACTATTTGAACT
* **
57363 AATTCGATAAACAGAATCATTTTTTAGATCACTTACTTATTAATTTTTGGAATATTAATAAATTA
64 AATTCGATAAACAGAATCATTTTTTAAATCACTTACTTATTAATTTTCAGAATATTAATAAATTA
*
57428 CTATTATTTTATTTCGAATAAGCTTGTATGAAC-TGAAACAATTGTTTTATGACAAAACAAAAGG
129 CTATTATTTTATTTCGAATAAGCTTGTATGAACATG-AACAATTATTTTATGACAAAACAAAAGG
* * ***
57492 TCATAATGATTTAAATAGATAATTGTTCAAATAGTCATAACTATTTGAATTTGTTCAATAAACAA
193 TCATAATGATTTAAATAGACAATTGTTCAAATAGTCATAACTATTTAAACGAGTTCAATAAACAA
* *
57557 ATTAATTTTTTTAAACTCTTACTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTT
258 ATTAATTTTTTTAAACTCTTACTTATTAACTTTTGAAAGATTAAGAAATTAGTATTATTTTATTT
* * * *
57622 TGGATAAGCTTTTATGAACTGAAACAAATTTTTTTTGTG
323 TGGA-AAGCTTGTATGAACTGAAACAAATTTGTTATATG
* * * *
57661 AAAACAAAAGGTCATAATGATTTTAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACT
1 AAAACAAAAGGTAATAATGATTTCAAATAAATAATTGATCAAATAGCCATAACTATTTGAACT
57724 TGATCAGTTA
Statistics
Matches: 355, Mismatches: 57, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
357 70 0.20
358 38 0.11
359 3 0.01
361 64 0.18
362 1 0.00
363 10 0.03
364 3 0.01
365 4 0.01
368 4 0.01
369 6 0.02
370 149 0.42
371 3 0.01
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (360 bp):
AAAACAAAAGGTAATAATGATTTCAAATAAATAATTGATCAAATAGCCATAACTATTTGAACTAA
TTCGATAAACAGAATCATTTTTTAAATCACTTACTTATTAATTTTCAGAATATTAATAAATTACT
ATTATTTTATTTCGAATAAGCTTGTATGAACATGAACAATTATTTTATGACAAAACAAAAGGTCA
TAATGATTTAAATAGACAATTGTTCAAATAGTCATAACTATTTAAACGAGTTCAATAAACAAATT
AATTTTTTTAAACTCTTACTTATTAACTTTTGAAAGATTAAGAAATTAGTATTATTTTATTTTGG
AAAGCTTGTATGAACTGAAACAAATTTGTTATATG
Found at i:57569 original size:181 final size:178
Alignment explanation
Indices: 57157--57748 Score: 676
Period size: 180 Copynumber: 3.3 Consensus size: 178
57147 AACTATACAT
* * ** * **
57157 TTGTTCAAATAGTCATAACTATTTAAACGAGTTTGATAAATAAATTTATTTTTTAAATTTCTTAC
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCAATAAACAAATTTATTTTTT-AATCACTTAC
* * **
57222 TTATTAACTTTTGAAAGATTAAT-AATTAGTATTATTTTATTTTG--AAGCTTGTATGATA-AAA
65 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGATAAGCTTGTATGA-ACTGA
* * * * *
57283 AATAATTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGATAA
129 AACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTT-AAATAGATAA
* * * * * * *
57334 TTGATGAAATAGCCATAATTATTTGAACTAATTCGATAAACAGAA-TCATTTTTTAGATCACTTA
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCAATAAACA-AATTTATTTTTTA-ATCACTTA
* * *
57398 CTTATTAATTTTTGGAATATTAATAAATTACTATTATTTTATTTCGAATAAGCTTGTATGAACTG
64 CTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTG-ATAAGCTTGTATGAACTG
57463 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAATAGATAA
128 AAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAATAGATAA
* * * * *
57514 TTGTTCAAATAGTCATAACTATTTGAATTTGTTCAATAAACAAATTAATTTTTTTAAACTCTTAC
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCAATAAACAAATTTA-TTTTTTAATCACTTAC
* *
57579 TTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGGATAAGCTTTTATGAACTGA
65 TTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTT-GATAAGCTTGTATGAACTGA
* ** *
57644 AACAAATT-TTTTTTGTGAAAACAAAAGGTCATAATGATTTTAAATAAATAA
129 AAC-AATTGTTTTATGACAAAACAAAAGGTCATAATGA-TTTAAATAGATAA
* * *
57695 TTGTTCAAATAGTCATAACTATTTGAACTTGATCAGTTAAA-AAATTTATTTTTT
1 TTGTTCAAATAGTCATAACTATTTGAACTAGTTCA-ATAAACAAATTTATTTTTT
57749 CATATATTTG
Statistics
Matches: 354, Mismatches: 48, Indels: 23
0.83 0.11 0.05
Matches are distributed among these distances:
176 1 0.00
177 68 0.19
178 21 0.06
179 2 0.01
180 147 0.42
181 111 0.31
182 4 0.01
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (178 bp):
TTGTTCAAATAGTCATAACTATTTGAACTAGTTCAATAAACAAATTTATTTTTTAATCACTTACT
TATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTTGATAAGCTTGTATGAACTGAAA
CAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTAAATAGATAA
Found at i:57829 original size:28 final size:27
Alignment explanation
Indices: 57783--57854 Score: 74
Period size: 28 Copynumber: 2.6 Consensus size: 27
57773 TGAATGTTAA
57783 TAATTAAAA-ATTATGAATTTTAAATATT
1 TAATTAAAATATT-T-AATTTTAAATATT
* *
57811 TAAATTAAAATATTTAATTTTTATTATT
1 T-AATTAAAATATTTAATTTTAAATATT
*
57839 TAATTATAGATATTTA
1 TAATTA-AAATATTTA
57855 TTAATAAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
27 5 0.13
28 21 0.55
29 9 0.24
30 3 0.08
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (27 bp):
TAATTAAAATATTTAATTTTAAATATT
Found at i:58031 original size:19 final size:18
Alignment explanation
Indices: 57979--58031 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 18
57969 AATAGATAAT
57979 TATTATT-AATATAATTA
1 TATTATTAAATATAATTA
*
57996 -ATTATTAACTAT--TTA
1 TATTATTAAATATAATTA
58011 TATTATTAAATATAATGTA
1 TATTATTAAATATAAT-TA
58030 TA
1 TA
58032 AGATATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 3 0.10
16 17 0.59
17 4 0.14
18 1 0.03
19 4 0.14
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
TATTATTAAATATAATTA
Found at i:58062 original size:16 final size:17
Alignment explanation
Indices: 58043--58076 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
58033 GATATTATTC
58043 AAATAATATTA-TTATA
1 AAATAATATTACTTATA
*
58059 AAATAGTATTACTTATA
1 AAATAATATTACTTATA
58076 A
1 A
58077 TTAATAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (17 bp):
AAATAATATTACTTATA
Found at i:58146 original size:20 final size:21
Alignment explanation
Indices: 58123--58168 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
58113 AATAATTAAA
58123 ATATTATTTGA-A-TATATAAT
1 ATATTATTT-ATATTATATAAT
58143 ATATT-TTTATATTATATAAT
1 ATATTATTTATATTATATAAT
*
58163 AAATTA
1 ATATTA
58169 ATAATATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
18 1 0.05
19 4 0.18
20 17 0.77
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
ATATTATTTATATTATATAAT
Found at i:58865 original size:181 final size:180
Alignment explanation
Indices: 58422--58901 Score: 565
Period size: 181 Copynumber: 2.6 Consensus size: 180
58412 CCATTTAAAC
*
58422 AATTATCTATTTCAAATC-ATTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTCATTATAC
1 AATTATCTATTTCAAATCGA-TATGACCTTTTGTTTTGTCATAAAACAATTGTTTTT-ATTATAC
* * *
58486 AAGCCTATTCAGAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTAGGAGATTT
64 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAACTAGGAGATTT
* * * * *
58551 AAAAAATAAATATGTTTATCGAATCAATTCAAATAGTTATGACTATTTGAAT
129 AAAAAATAAATATGTTTACCAAACCAATTCAAATAGTTAAGACTATATGAAT
* * * *
58603 AATTATATATTTTC-AATCGTTATAACCTTTTGTTTTGTCATAAAACAATTATTTATCT-TTATA
1 AATTATCTA-TTTCAAATCGATATGACCTTTTGTTTTGTCATAAAACAATTGTTT-T-TATTATA
* * * * *
58666 CAAGCTTATTCGAAATAAAATAATACTAATCTAGTAATATTATG-AAATTTAATAACT-GATAGA
63 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAACTAG-GAGA
* * *
58729 TTTAAAAAATAAATTTGTTTGCCAAACCAATTCAAATAGTTAAGGCTATATGAAT
126 TTTAAAAAATAAATATGTTTACCAAACCAATTCAAATAGTTAAGACTATATGAAT
* * * * * **
58784 AATTATCTATTTCAAATCGATATGACCTTTTATTTTATCGTAAAACAAATGTTTTTGTTCATGTA
1 AATTATCTATTTCAAATCGATATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATT-ATACA
* * * *
58849 AGTTTGTTCAAAATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAA
65 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAA
58902 GAGATTTAAT
Statistics
Matches: 250, Mismatches: 39, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
179 1 0.00
180 9 0.04
181 232 0.93
182 7 0.03
183 1 0.00
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.41
Consensus pattern (180 bp):
AATTATCTATTTCAAATCGATATGACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTATACAA
GCTTATTCAAAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAACTAGGAGATTTAA
AAAATAAATATGTTTACCAAACCAATTCAAATAGTTAAGACTATATGAAT
Found at i:60024 original size:164 final size:164
Alignment explanation
Indices: 59723--60060 Score: 491
Period size: 164 Copynumber: 2.0 Consensus size: 164
59713 CTTTTACTTA
* * * *
59723 TTAATTGTTGGAATATTATTAAATTAGTATTATTTTATTTTGAATAAGCTTATGTAGACAGAAAC
1 TTAATT-TTGAAATATTAATAAATTAG-ATTATTTTATTTCGAATAAGCTTATATAGACAGAAAC
* * * * *
59788 AATTGGTTCATTATAAAACAAATGGTCATAACTATTTGAAATAGATAATTGTTCAAATAATCAGA
64 AATTGGTTCATCACAAAACAAAAGGTCATAACCATTTGAAATAAATAATTGTTCAAATAATCAGA
*
59853 TCTATTTGAACATGTTCAAAAAACAAATTTATTTTT
129 ACTATTTGAACATGTTCAAAAAACAAATTTATTTTT
* *
59889 TTAATTTTGAAATATTAATAAATTTA-ATTATTTTA-TTCGAAATAAGCTTGTATGGACAGAAAC
1 TTAATTTTGAAATATTAATAAA-TTAGATTATTTTATTTCG-AATAAGCTTATATAGACAGAAAC
* *
59952 AATTGGTTTATCACAAAACAAAAGGTCATAACCATTTGAAATAAATAATTGTTCAAATAGTCAGA
64 AATTGGTTCATCACAAAACAAAAGGTCATAACCATTTGAAATAAATAATTGTTCAAATAATCAGA
60017 ACTATTTGAACATGTTCAAAAAACAAATTTATTTTT
129 ACTATTTGAACATGTTCAAAAAACAAATTTATTTTT
*
60053 TAAATTTT
1 TTAATTTT
60061 TACTCATTAA
Statistics
Matches: 155, Mismatches: 15, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
163 3 0.02
164 129 0.83
165 14 0.09
166 9 0.06
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.39
Consensus pattern (164 bp):
TTAATTTTGAAATATTAATAAATTAGATTATTTTATTTCGAATAAGCTTATATAGACAGAAACAA
TTGGTTCATCACAAAACAAAAGGTCATAACCATTTGAAATAAATAATTGTTCAAATAATCAGAAC
TATTTGAACATGTTCAAAAAACAAATTTATTTTT
Found at i:60701 original size:180 final size:180
Alignment explanation
Indices: 60210--61195 Score: 939
Period size: 180 Copynumber: 5.5 Consensus size: 180
60200 TTAATTTCTG
* * * * * * * * *
60210 TTCA-ACAAGCTTATTTAGAGTAAAATATTGCTAAATTAATAATATTCTAAACATTAATAAGTAA
1 TTCATACAAGCTTATTGA-AATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTTA
* * * * *
60274 G-GATTTAAAAAATAAATGTGTTTA-CTGAATCAGTTCAAATAGTTAAGACTATTAGAACAGTTA
65 GAGATTTAAAAAATAAATCTGTTTATC-GAATCAGTTCAAATAATTATGACTATTTGAACAATTA
* * * * **
60337 TCTATTTAAAATCATTTTAACCTTTTGTTTAGTCATAAAATAATTGCTTCAAC
129 TCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTG-TTTTAC
* * * *
60390 -TCATACATGCTTATTTGAAATAAAATAATACTAATTTATTAACATTCA-AAAAATTATTAAGTA
1 TTCATACAAGCTTA-TTGAAATAAAATAATACTAATTTATTAATATT-ATAAAAATTAATAAGTT
* * * ** * * *
60453 AGA-AATTAGAAAAAAAAATCTATTTGCCGAA-CAAGTTCAGATATTTTTGACTATTTGAACAAT
64 AGAGATTTA-AAAAATAAATCTGTTTATCGAATC-AGTTCAAATAATTATGACTATTTGAACAAT
* * * *
60516 TATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAACAATTGTTTTAG
127 TATCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTAC
* * *
60570 TTCATAAAAGCTTATCTGAAAT-AAATAATATTACTTTATTAATATTATAAAAATTAATAAGTTA
1 TTCATACAAGCTTAT-TGAAATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTTA
* * * * *
60634 GAGATTTAAAACATAAATCAGTTTATCGAATCAGTTCAAATAATTATGGCCATTTAAACAATTAT
65 GAGATTTAAAAAATAAATCTGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACAATTAT
* * *
60699 CTATTTCAAATCATTATGAACTTTTGTTTTGTCATAAAACAATTGTTTTTC
130 CTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTAC
* * *
60750 ATCATACAAGCCTATTCATAATAAAATAATACT-ATTTATTAATATT-TGAAAAATTAATAAG-T
1 TTCATACAAGCTTATTGA-AATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAAGTT
* *
60812 AGAAGATTTAAAAAATAAATCTGTTTATCGAATTAGTTCAAATAATTATGACTATTTGAATAATT
64 AG-AGATTTAAAAAATAAATCTGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACAATT
* ** * * *
60877 ATATATTTTCAATCGTTATAACCTTTTGTTTTGTCATAAAACAATT-ATTTATC
128 ATCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTA-C
* * * * * *
60930 TTTATACAAGTTTATTCAAAATAAAATAATACTAATTTAATAATATTATGAAATTTAATAA-TTG
1 TTCATACAAGCTTATT-GAAATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTT-
* * * * * * * * *
60994 ATAGATTTAAAAAATAAATTTGTTTAGCGAATCAATTCAAATAGTTAAGGCTATATGAATAATTA
64 AGAGATTTAAAAAATAAATCTGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACAATTA
* * * **
61059 TCTATTTCAAATCGTT-TGACCTTTTGTTTTGTCATAAAACAAATGTTTTTG
129 TCTATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTAC
* * * *
61110 TTCATATAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATATT-TCAAAAATTAAT-A---
1 TTCATACAAGCTTATT-GAAATAAAATAATACTAATTTATTAATATTAT-AAAAATTAATAAGTT
* *
61170 AGAGATTTAATAAATAAATCTATTTA
64 AGAGATTTAAAAAATAAATCTGTTTA
61196 CCATACTAGT
Statistics
Matches: 665, Mismatches: 117, Indels: 52
0.80 0.14 0.06
Matches are distributed among these distances:
176 22 0.03
179 15 0.02
180 415 0.62
181 210 0.32
182 3 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.40
Consensus pattern (180 bp):
TTCATACAAGCTTATTGAAATAAAATAATACTAATTTATTAATATTATAAAAATTAATAAGTTAG
AGATTTAAAAAATAAATCTGTTTATCGAATCAGTTCAAATAATTATGACTATTTGAACAATTATC
TATTTAAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTTAC
Found at i:60959 original size:361 final size:357
Alignment explanation
Indices: 60240--61249 Score: 1042
Period size: 361 Copynumber: 2.8 Consensus size: 357
60230 TAAAATATTG
* * * * *
60240 CTAAATTAATAATATTCTAAACATTAATAAGTAAG-GATTTAAAAAATAAATGTGTTTACTGAAT
1 CTAATTTAATAATATTATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTAC-GAAT
* * * * *
60304 CAGTTCAAATAGTTAAGACTA-TTAGAACAGTTATCTATTTAAAATCATTTTAACCTTTTGTTTA
65 CAGTTCAAATAGTTAAGGCTATTTA-AACAATTATCTATTTCAAATCATTTGAA-CTTTTGTTTT
* * * *
60368 GTCATAAAATAATTG--CTTCAACTCATACATGCTTATTTGAAATAAAATAATACTAATTTATTA
128 GTCATAAAACAATTGTTTTTC-A-TCATACAAGCTTA-TTCAAATAAAATAATACTAATTTATTA
* * * * * * *
60431 ACATTCAAAAAATTATTAAGTAAGAA-A-TTAGAAAAAAAAATCTATTTGCCGAACAAGTTCAGA
190 ATATTTAAAAAATTAATAAGT-AGAAGATTTA-AAAAATAAATCTATTT-ACGAACTAGTTCAAA
* * * * ** * *
60494 TATTTTTGACTATTTGAACAATTATCTATTTAAAATCATTATGACCTTATATTTTATCATAAAAC
252 TAATTATGACTATTTGAATAATTATATATTTTCAATCGTTATAACCTTATATTTTATCATAAAAC
* * *
60559 AATTGTTTTAGTTCATAAAAGCTTATCTGAAATAAATAATA
317 AATTATTTTACTTCATAAAAGCTTATCTAAAATAAATAATA
* * * * *
60600 TTACTTTATTAATATTATAAAAATTAATAAGTTAGAGATTTAAAACATAAATCAGTTTATCGAAT
1 CTAATTTAATAATATTATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTA-CGAAT
* * *
60665 CAGTTCAAATAATTATGGCCATTTAAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTG
65 CAGTTCAAATAGTTAAGGCTATTTAAACAATTATCTATTTCAAATCATT-TGAACTTTTGTTTTG
*
60730 TCATAAAACAATTGTTTTTCATCATACAAGCCTATTCATAATAAAATAATACT-ATTTATTAATA
129 TCATAAAACAATTGTTTTTCATCATACAAGCTTATTCA-AATAAAATAATACTAATTTATTAATA
* * *
60794 TTTGAAAAATTAATAAGTAGAAGATTTAAAAAATAAATCTGTTTATCGAATTAGTTCAAATAATT
193 TTTAAAAAATTAATAAGTAGAAGATTTAAAAAATAAATCTATTTA-CGAACTAGTTCAAATAATT
* * *
60859 ATGACTATTTGAATAATTATATATTTTCAATCGTTATAACCTTTTGTTTTGTCATAAAACAATTA
257 ATGACTATTTGAATAATTATATATTTTCAATCGTTATAACCTTATATTTTATCATAAAACAATTA
* * *
60924 -TTTATCTTTATACAAGTTTAT-TCAAAATAAAATAATA
322 TTTTA-CTTCATAAAAGCTTATCT-AAAAT-AAATAATA
* * * *
60961 CTAATTTAATAATATTATGAAATTTAATAA-TTGATAGATTTAAAAAATAAATTTGTTTAGCGAA
1 CTAATTTAATAATATTATAAAAATTAATAAGTT-AGAGATTTAAAAAATAAATCTGTTTA-CGAA
* * * * * *
61025 TCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCGTTTGACCTTTTGTTTTG
64 TCAGTTCAAATAGTTAAGGCTATTTAAACAATTATCTATTTCAAATCATTTGAACTTTTGTTTTG
* ** * * * *
61090 TCATAAAACAAATGTTTTTGTTCATATAAGTTTGTTCGAAATAAAATAATATTAATTTATTAATA
129 TCATAAAACAATTGTTTTTCATCATACAAGCTTATTC-AAATAAAATAATACTAATTTATTAATA
* * * * *
61155 TTTCAAAAATTAAT-A--AG-AGATTTAATAAATAAATCTATTTACCATACTAGTTCAATTAGTT
193 TTTAAAAAATTAATAAGTAGAAGATTTAAAAAATAAATCTATTTACGA-ACTAGTTCAAATAATT
* * * *
61216 ATAACAATTTGAATATTTATTTA-TTTCAAATCGT
257 ATGACTATTTGAATAATTATATATTTTC-AATCGT
61250 ACTAAATTAA
Statistics
Matches: 544, Mismatches: 88, Indels: 39
0.81 0.13 0.06
Matches are distributed among these distances:
356 6 0.01
357 60 0.11
358 2 0.00
359 9 0.02
360 216 0.40
361 240 0.44
362 8 0.01
363 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (357 bp):
CTAATTTAATAATATTATAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTGTTTACGAATC
AGTTCAAATAGTTAAGGCTATTTAAACAATTATCTATTTCAAATCATTTGAACTTTTGTTTTGTC
ATAAAACAATTGTTTTTCATCATACAAGCTTATTCAAATAAAATAATACTAATTTATTAATATTT
AAAAAATTAATAAGTAGAAGATTTAAAAAATAAATCTATTTACGAACTAGTTCAAATAATTATGA
CTATTTGAATAATTATATATTTTCAATCGTTATAACCTTATATTTTATCATAAAACAATTATTTT
ACTTCATAAAAGCTTATCTAAAATAAATAATA
Found at i:61476 original size:10 final size:10
Alignment explanation
Indices: 61461--61529 Score: 52
Period size: 10 Copynumber: 6.7 Consensus size: 10
61451 ATAGTTTAAG
61461 ATTATTACTA
1 ATTATTACTA
61471 ATTATTACATTA
1 ATTATTAC--TA
* * *
61483 CTTATAATTA
1 ATTATTACTA
*
61493 ATTATTATTA
1 ATTATTACTA
61503 A-TATTACTTA
1 ATTATTAC-TA
61513 ATTATATACT-
1 ATTAT-TACTA
61523 ATTATTA
1 ATTATTA
61530 TATGTATTAT
Statistics
Matches: 48, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
9 7 0.15
10 27 0.56
11 4 0.08
12 10 0.21
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTATTACTA
Found at i:61513 original size:20 final size:18
Alignment explanation
Indices: 61489--61564 Score: 68
Period size: 18 Copynumber: 4.1 Consensus size: 18
61479 ATTACTTATA
61489 ATTAATTATTATTAATATT
1 ATTAATTATTA-TAATATT
*
61508 ACTTAATTA-TATACTATT
1 A-TTAATTATTATAATATT
61526 ATTATATGTATTATAATATT
1 ATTA-AT-TATTATAATATT
*
61546 A-TAACTAATTATAAT-TT
1 ATTAA-TTATTATAATATT
61563 AT
1 AT
61565 ATAAAATAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
17 6 0.12
18 18 0.38
19 8 0.17
20 16 0.33
ACGTcount: A:0.42, C:0.04, G:0.01, T:0.53
Consensus pattern (18 bp):
ATTAATTATTATAATATT
Found at i:61547 original size:17 final size:18
Alignment explanation
Indices: 61525--61566 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
61515 TATATACTAT
*
61525 TATTATATGT-ATTATAA
1 TATTATATCTAATTATAA
*
61542 TATTATAACTAATTATAA
1 TATTATATCTAATTATAA
61560 T-TTATAT
1 TATTATAT
61567 AAAATAGTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (18 bp):
TATTATATCTAATTATAA
Found at i:61927 original size:5 final size:5
Alignment explanation
Indices: 61905--61952 Score: 51
Period size: 5 Copynumber: 8.8 Consensus size: 5
61895 TATGTTAATC
*
61905 ATATT ACATT ACTAATT ATATT ATTATT ATTATT ATATT ATATT ATAT
1 ATATT ATATT A-T-ATT ATATT A-TATT A-TATT ATATT ATATT ATAT
61953 AAAACAAAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
5 22 0.58
6 12 0.32
7 4 0.11
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:62367 original size:13 final size:14
Alignment explanation
Indices: 62344--62381 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
62334 TAATAATAGT
62344 TAATAAATTAAA-TA
1 TAAT-AATTAAATTA
*
62358 TAATAGTTAAATTA
1 TAATAATTAAATTA
62372 TAATAATTAA
1 TAATAATTAA
62382 TAAGTAAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
13 6 0.29
14 15 0.71
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (14 bp):
TAATAATTAAATTA
Found at i:62440 original size:12 final size:13
Alignment explanation
Indices: 62423--62469 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
62413 ATTTATTTAA
62423 TTATATAAAAT-T
1 TTATATAAAATAT
*
62435 TTATATTAAATAT
1 TTATATAAAATAT
* *
62448 TTAAATTAAATAT
1 TTATATAAAATAT
62461 TTATTATAA
1 TTA-TATAA
62470 TATAATAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 10 0.34
13 16 0.55
14 3 0.10
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
TTATATAAAATAT
Found at i:62443 original size:21 final size:20
Alignment explanation
Indices: 62414--62452 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
62404 ATATATTTAA
*
62414 TTTATTTAATTATATAAAAT
1 TTTATTTAAATATATAAAAT
*
62434 TTTATATTAAATATTTAAA
1 TTTAT-TTAAATATATAAA
62453 TTAAATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTATTTAAATATATAAAAT
Found at i:62450 original size:13 final size:13
Alignment explanation
Indices: 62423--62464 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
62413 ATTTATTTAA
*
62423 TTATATAAAAT-T
1 TTATATTAAATAT
62435 TTATATTAAATAT
1 TTATATTAAATAT
*
62448 TTAAATTAAATAT
1 TTATATTAAATAT
62461 TTAT
1 TTAT
62465 TATAATATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTATATTAAATAT
Found at i:62508 original size:17 final size:18
Alignment explanation
Indices: 62486--62531 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
62476 AAATATTATA
*
62486 TAATTATATTATTAAT-T
1 TAATTATATTAATAATAT
62503 TAATTATA-TAATAATAT
1 TAATTATATTAATAATAT
*
62520 TAATTTTATTAA
1 TAATTATATTAA
62532 AAATTGAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.24
17 16 0.64
18 3 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TAATTATATTAATAATAT
Found at i:62530 original size:22 final size:25
Alignment explanation
Indices: 62479--62530 Score: 74
Period size: 22 Copynumber: 2.2 Consensus size: 25
62469 ATATAATAAA
62479 TATTATATAATTATATTATTAATTT
1 TATTATATAATTATATTATTAATTT
*
62504 AATTATATAA-TA-A-TATTAATTT
1 TATTATATAATTATATTATTAATTT
62526 TATTA
1 TATTA
62531 AAAATTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 13 0.52
23 1 0.04
24 2 0.08
25 9 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (25 bp):
TATTATATAATTATATTATTAATTT
Found at i:62595 original size:13 final size:14
Alignment explanation
Indices: 62577--62625 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
62567 AATATTTAGA
62577 TAATTAA-TAATAT
1 TAATTAATTAATAT
62590 TAATTAATTAATAT
1 TAATTAATTAATAT
*
62604 TCTATTATATTAA-A-
1 T-AATTA-ATTAATAT
62618 TAATTAAT
1 TAATTAAT
62626 AAGAATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 11 0.35
14 8 0.26
15 5 0.16
16 5 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:63481 original size:182 final size:180
Alignment explanation
Indices: 63024--63592 Score: 647
Period size: 182 Copynumber: 3.2 Consensus size: 180
63014 ATAAATTTAC
* * *
63024 TTTTTAAATTTCTTACTTATTAACTTTTGAAAGATTAATAAATTAGTATTATTTTATTTTG---A
1 TTTTTAAACTT-TTACTTATTAATTTTTGAAATATTAA-AAATTAGTATTATTTTATTTTGAATA
* * * * * *
63086 AGCTTGTATGATA-AAAAACAATTGTTATATGACCAAACAAAAGGTAATATTGATTTCAAATAGA
64 AGCTTGTATGA-ACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGA
* * * ** * *
63150 TAATTGTTGAAATAGCCATAATTATTTGAACTAATTCGATAAAC-AA--AATTA
128 TAATTGTTCAAATAGTCATAACTATTTGAACTTGTTAG-TAAACAAATTAATTT
* * * *
63201 TTTTTAAA---TCACTTATTAATTTTTGAAATATTAATAATTACTATTATTTTATTTCGAATAAG
1 TTTTTAAACTTTTACTTATTAATTTTTGAAATATTAAAAATTAGTATTATTTTATTTTGAATAAG
*
63263 CTTGTATAAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
66 CTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
*
63328 TTGTTCAAATAGTCATAACTATTTGAATTTGTTAAGTAAACAAATTAATTT
131 TTGTTCAAATAGTCATAACTATTTGAACTTGTT-AGTAAACAAATTAATTT
*
63379 TTTTTAAACTTTTGCTTATTAATTTTTGAAATATTAAGAAATTAGTATTATTTTATTTTGAATAA
1 TTTTTAAACTTTTACTTATTAATTTTTGAAATATTAA-AAATTAGTATTATTTTATTTTGAATAA
* ** * * *
63444 GCTTTTATGAACTGCAACAATTGTTTTTTGTCAAAACAAAAGGTCATAATGATTTTAAATAAATA
65 GCTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATA
* ** * *
63509 ATTGTTTAAATAGTCATAACTATTTGAACTTGATCGGTAAACAGATTTA-TT
130 ATTGTTCAAATAGTCATAACTATTTGAACTTG-TTAGTAAACAAATTAATTT
* * *
63560 TTTTCATATCTTTTGCTTATTAATTTTTTGAAA
1 TTTTTA-AACTTTTACTTATTAA-TTTTTGAAA
63593 GTTAATAATT
Statistics
Matches: 336, Mismatches: 41, Indels: 24
0.84 0.10 0.06
Matches are distributed among these distances:
172 19 0.06
173 23 0.07
174 1 0.00
175 91 0.27
176 3 0.01
177 8 0.02
178 12 0.04
181 31 0.09
182 138 0.41
183 10 0.03
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (180 bp):
TTTTTAAACTTTTACTTATTAATTTTTGAAATATTAAAAATTAGTATTATTTTATTTTGAATAAG
CTTGTATGAACTAAAACAATTGTTTTATGACAAAACAAAAGGTCATAATGATTTTAAATAGATAA
TTGTTCAAATAGTCATAACTATTTGAACTTGTTAGTAAACAAATTAATTT
Found at i:64063 original size:23 final size:22
Alignment explanation
Indices: 64034--64086 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 22
64024 TTAAACTTAA
64034 TAATTATTT-GAATAATTATAAAT
1 TAATTATTTAGAAT-ATTA-AAAT
*
64057 TAATTATTTATAATATTAAAAT
1 TAATTATTTAGAATATTAAAAT
64079 TATATTAT
1 TA-ATTAT
64087 AAATTAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
22 6 0.22
23 18 0.67
24 3 0.11
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
TAATTATTTAGAATATTAAAAT
Found at i:64081 original size:18 final size:18
Alignment explanation
Indices: 64048--64093 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
64038 TATTTGAATA
64048 ATTATAAATT--AATTAT
1 ATTATAAATTAAAATTAT
64064 -TTATAATATTAAAATTAT
1 ATTATAA-ATTAAAATTAT
64082 ATTATAAATTAA
1 ATTATAAATTAA
64094 TATAATATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 6 0.23
16 3 0.12
18 11 0.42
19 6 0.23
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
ATTATAAATTAAAATTAT
Found at i:64082 original size:29 final size:29
Alignment explanation
Indices: 64047--64114 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
64037 TTATTTGAAT
* *
64047 AATTATAAATTAATTATTTATAATAT-TAA
1 AATTATAAATAAATTA-ATATAATATATAA
* *
64076 AATTATATTATAAATTAATATAATATATTA
1 AATTATA-AATAAATTAATATAATATATAA
64106 AATTATAAA
1 AATTATAAA
64115 ATTTACTTTA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 16 0.50
30 16 0.50
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (29 bp):
AATTATAAATAAATTAATATAATATATAA
Found at i:64101 original size:18 final size:17
Alignment explanation
Indices: 64048--64110 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 17
64038 TATTTGAATA
64048 ATTATAAATTAAT-TAT
1 ATTATAAATTAATATAT
*
64064 -TTATAATATTAAAATTAT
1 ATTATAA-ATTAATA-TAT
64082 ATTATAAATTAATATA-
1 ATTATAAATTAATATAT
64098 ATATATTAAATTA
1 AT-TA-TAAATTA
64111 TAAAATTTAC
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
15 6 0.15
16 7 0.18
17 4 0.10
18 16 0.41
19 6 0.15
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATAAATTAATATAT
Found at i:64348 original size:26 final size:24
Alignment explanation
Indices: 64306--64356 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 24
64296 TATTGTTACT
64306 TAATATTTAAATTATAAAACTTAA
1 TAATATTTAAATTATAAAACTTAA
*
64330 TAATATTATAACATTATAATACTTAA
1 TAATATT-TAA-ATTATAAAACTTAA
64356 T
1 T
64357 TTAAACAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 7 0.29
25 3 0.12
26 14 0.58
ACGTcount: A:0.51, C:0.06, G:0.00, T:0.43
Consensus pattern (24 bp):
TAATATTTAAATTATAAAACTTAA
Found at i:65343 original size:17 final size:18
Alignment explanation
Indices: 65308--65349 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
65298 ATTTAATAAT
*
65308 TTAATTTAATTTAAGTTA
1 TTAATTAAATTTAAGTTA
* *
65326 -TAATTAAATTTTATTTA
1 TTAATTAAATTTAAGTTA
65343 TTAATTA
1 TTAATTA
65350 TAACAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TTAATTAAATTTAAGTTA
Found at i:66293 original size:27 final size:28
Alignment explanation
Indices: 66234--66293 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
66224 CAAAATGTTA
* *
66234 CAATTATAATTATAAATTATAATTTTTT
1 CAATAATAATTATAAATTATAATTTTAT
* * *
66262 AAATAATAA-TATTAATTGTAATTTTAT
1 CAATAATAATTATAAATTATAATTTTAT
66289 CAATA
1 CAATA
66294 TTACATTTCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (28 bp):
CAATAATAATTATAAATTATAATTTTAT
Found at i:66342 original size:16 final size:16
Alignment explanation
Indices: 66307--66349 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
66297 CATTTCTAAT
* *
66307 TATATTATTATTATTAA
1 TATATTA-TACTAATAA
66324 TATATTATACTAATAA
1 TATATTATACTAATAA
66340 TATATTATAC
1 TATATTATAC
66350 AAAACAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 17 0.71
17 7 0.29
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (16 bp):
TATATTATACTAATAA
Found at i:66852 original size:31 final size:32
Alignment explanation
Indices: 66816--66915 Score: 96
Period size: 38 Copynumber: 2.9 Consensus size: 32
66806 TATCATTATA
66816 ATATATTTA-ATTTATTTAATTATATAATATT
1 ATATATTTATATTTATTTAATTATATAATATT
*
66847 ATATATTAAATATTTATTATAA-TATAATAAATATT
1 ATATATT-TATATTTATT-TAATTAT-AT-AATATT
*
66882 ATATAATTATTATTATTAATTTAATTATATAATA
1 ATAT-A-T-TTA-TATTTATTTAATTATATAATA
66916 ATATTAATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
31 7 0.12
32 1 0.02
33 10 0.18
34 5 0.09
35 10 0.18
36 5 0.09
37 7 0.12
38 11 0.20
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (32 bp):
ATATATTTATATTTATTTAATTATATAATATT
Found at i:66887 original size:14 final size:14
Alignment explanation
Indices: 66816--66921 Score: 66
Period size: 14 Copynumber: 8.1 Consensus size: 14
66806 TATCATTATA
*
66816 ATATATTTAAT-TT
1 ATATAATTAATATT
*
66829 ATTTAATT-ATA-T
1 ATATAATTAATATT
66841 A-AT-ATTATATATT
1 ATATAATTA-ATATT
* * * *
66854 AAATATTTATTATA
1 ATATAATTAATATT
*
66868 ATATAATAAATATT
1 ATATAATTAATATT
*
66882 ATATAATTATTATT
1 ATATAATTAATATT
*
66896 AT-TAATTTA-ATT
1 ATATAATTAATATT
66908 ATATAA-TAATATT
1 ATATAATTAATATT
66921 A
1 A
66922 ATTTTATTAA
Statistics
Matches: 69, Mismatches: 16, Indels: 16
0.68 0.16 0.16
Matches are distributed among these distances:
10 3 0.04
11 1 0.01
12 14 0.20
13 20 0.29
14 28 0.41
15 3 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (14 bp):
ATATAATTAATATT
Found at i:66996 original size:13 final size:14
Alignment explanation
Indices: 66978--67026 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
66968 AATATTTAAA
66978 TAATTAA-TAATAT
1 TAATTAATTAATAT
66991 TAATTAATTAATAT
1 TAATTAATTAATAT
*
67005 TCTATTATATTAA-A-
1 T-AATTA-ATTAATAT
67019 TAATTAAT
1 TAATTAAT
67027 AAGAATTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
12 2 0.06
13 11 0.35
14 8 0.26
15 5 0.16
16 5 0.16
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (14 bp):
TAATTAATTAATAT
Found at i:66998 original size:17 final size:18
Alignment explanation
Indices: 66967--67003 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
66957 TTTATCAAAC
66967 TAATATTTAAATAATTAA
1 TAATATTTAAATAATTAA
*
66985 TAATA-TTAATTAATTAA
1 TAATATTTAAATAATTAA
67002 TA
1 TA
67004 TTCTATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (18 bp):
TAATATTTAAATAATTAA
Found at i:67003 original size:24 final size:25
Alignment explanation
Indices: 66976--67028 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
66966 CTAATATTTA
*
66976 AATAATT-AATAATATTAATTAATT
1 AATAATTCAATAATATTAAATAATT
* *
67000 AAT-ATTCTATTATATTAAATAATT
1 AATAATTCAATAATATTAAATAATT
67024 AATAA
1 AATAA
67029 GAATTTATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
23 3 0.12
24 20 0.83
25 1 0.04
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
AATAATTCAATAATATTAAATAATT
Found at i:67869 original size:25 final size:25
Alignment explanation
Indices: 67823--68023 Score: 114
Period size: 25 Copynumber: 7.7 Consensus size: 25
67813 CAGCACTTAT
67823 TTATTAA-A-TTA-TATATTAAATAA
1 TTATTAATATTTATTATATT-AATAA
*
67846 TTATTAATATTTATTATATTAATAT
1 TTATTAATATTTATTATATTAATAA
67871 TTATT-ATAATTGATAGTTTAATATTAATAA
1 TTATTAAT-ATT--TA--TT-ATATTAATAA
* *
67901 ATATTAATATTTATTATATTAATAGT
1 TTATTAATATTTATTATATTAATA-A
* *
67927 TTAATATAATATTTA-TATTTTTAT-A
1 TT-AT-TAATATTTATTATATTAATAA
*
67952 TTAATATATATATAATATTTATATTAATATA
1 TT-AT-TA-ATAT-TTA-TTATATTAATA-A
*
67983 ATATT-ATATTTTATTATATT-ATAA
1 TTATTAATA-TTTATTATATTAATAA
*
68007 -TATTAATAATTATTATA
1 TTATTAATATTTATTATA
68024 GTTTAATATA
Statistics
Matches: 143, Mismatches: 14, Indels: 42
0.72 0.07 0.21
Matches are distributed among these distances:
23 19 0.13
24 7 0.05
25 35 0.24
26 20 0.14
27 18 0.13
28 12 0.08
29 10 0.07
30 18 0.13
31 4 0.03
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (25 bp):
TTATTAATATTTATTATATTAATAA
Found at i:67875 original size:4 final size:5
Alignment explanation
Indices: 67847--68141 Score: 76
Period size: 5 Copynumber: 58.4 Consensus size: 5
67837 ATTAAATAAT
67847 TATTAA TATT- TATTA TATTAA TATT- TATTA TAATTGA TAGTTTAA TATTA
1 TATT-A TATTA TATTA TATT-A TATTA TATTA T-ATT-A TA--TT-A TATTA
* * *
67897 -ATAAA TATTAA TATT- TATTA TATTAA TAGTT- TAATA TAATA T-TTA
1 TAT-TA TATT-A TATTA TATTA TATT-A TA-TTA TATTA TATTA TATTA
* *
67942 TATT- T-TTA TATTAA TATATA TATAA TATTTA TATTAA TATAA TATTA
1 TATTA TATTA TATT-A TAT-TA TATTA TA-TTA TATT-A TATTA TATTA
* * * *
67989 TATTT TATTA TATTA TA--A TATTA -ATAA TTATTA TAGTT- TAATA TAATA
1 TATTA TATTA TATTA TATTA TATTA TATTA -TATTA TA-TTA TATTA TATTA
* * *
68037 GT-TTA TAGTTTA TAGTT- T-TAA TATCA TATT- TATTA AATTAA TATTAA
1 -TATTA TA--TTA TA-TTA TATTA TATTA TATTA TATTA TATT-A TATT-A
* * *
68084 TAGTT- TAATA TAATA T-TTA TATTTA TATTA TATTA -ATAA T-TTA -ATTA
1 TA-TTA TATTA TATTA TATTA TA-TTA TATTA TATTA TATTA TATTA TATTA
68131 TATT- TATTA TA
1 TATTA TATTA TA
68142 ATTGATAGTT
Statistics
Matches: 221, Mismatches: 25, Indels: 87
0.66 0.08 0.26
Matches are distributed among these distances:
3 6 0.03
4 46 0.21
5 90 0.41
6 62 0.28
7 12 0.05
8 5 0.02
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (5 bp):
TATTA
Found at i:67893 original size:39 final size:39
Alignment explanation
Indices: 67861--68128 Score: 154
Period size: 40 Copynumber: 6.8 Consensus size: 39
67851 AATATTTATT
*
67861 ATATTAATATTTATTATAATTGATAGTTTAATATTAATAA
1 ATATTAATATTTATTAT-ATTAATAGTTTAATATTAATAA
67901 ATATTAATATTTATTATATTAATAGTTTAATA-TAAT--
1 ATATTAATATTTATTATATTAATAGTTTAATATTAATAA
* *
67937 AT-TT-ATATTT-TTATATTAATATATATATAATATTTATATTA
1 ATATTAATATTTATTATATTAATA-GT-T-TAATA-TTA-ATAA
*
67978 ATA-TAATATTATATTTTATT-ATA-TTATAATATTAATAA
1 ATATTAATATT-TATTATATTAATAGTT-TAATATTAATAA
* * *
68016 TTATT-ATAGTTTAATATAATAGTTTATAGTTT-ATAGTT--TTA
1 ATATTAATA-TTT-AT-T-ATA-TTAATAGTTTAATA-TTAATAA
* *
68057 ATA-TCATATTTATTAAATTAATA--TTAATAGTTTAATATA
1 ATATTAATATTTATTATATTAATAGTTTAATA--TTAATA-A
* *
68096 ATATTTATATTTATATTATATTAATAATTTAAT
1 ATATTAATA-TT-TATTATATTAATAGTTTAAT
68129 TATATTTATT
Statistics
Matches: 182, Mismatches: 14, Indels: 60
0.71 0.05 0.23
Matches are distributed among these distances:
33 11 0.06
34 9 0.05
35 6 0.03
36 14 0.08
37 2 0.01
38 17 0.09
39 30 0.16
40 33 0.18
41 15 0.08
42 22 0.12
43 10 0.05
44 13 0.07
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (39 bp):
ATATTAATATTTATTATATTAATAGTTTAATATTAATAA
Found at i:67930 original size:23 final size:22
Alignment explanation
Indices: 67820--68180 Score: 106
Period size: 24 Copynumber: 16.2 Consensus size: 22
67810 TCACAGCACT
* *
67820 TATTTATTAAATTATATATTAAA
1 TATTTATTATATTA-ATATTTAA
* *
67843 TAATTATTAATATTTATTATATTAA
1 TATTTATT-ATA-TTAATAT-TTAA
*
67868 TATTTATTATAATTGATAGTTTAA
1 TATTTATTAT-ATTAATA-TTTAA
67892 TA-TTA--ATA--AATA-TTAA
1 TATTTATTATATTAATATTTAA
67908 TATTTATTATATTAATAGTTTAA
1 TATTTATTATATTAATA-TTTAA
* *
67931 TA--TA--ATATTTATATTTTTA
1 TATTTATTATATTAATA-TTTAA
*
67950 TATTAATATATATATAATATTT-A
1 TATTTAT-TATAT-TAATATTTAA
* *
67973 TATTAATATAATATT-ATATTTTAT
1 TATT--TATTATATTAATA-TTTAA
* *
67997 TATATTATAATATTAATAATTATTA
1 TAT-TTATTATATTAAT-ATT-TAA
68022 TAGTTTA--ATA-TAATAGTTT-A
1 TA-TTTATTATATTAATA-TTTAA
* *
68042 TAGTTTA-TAGTTTTAATA--TCA
1 TA-TTTATTA-TATTAATATTTAA
*
68063 TATTTATTAAATTAATA-TTAA
1 TATTTATTATATTAATATTTAA
68084 TAGTTTA--ATA-TAATATTT-A
1 TA-TTTATTATATTAATATTTAA
68103 TATTTATATTATATTAATAATTTAATTA
1 TA-TT-TATTATATTAAT-ATTT-A--A
*
68131 TATTTATTATAATTGATAGTTTAA
1 TATTTATTAT-ATTAATA-TTTAA
* * *
68155 TATTAATAAATATTAATAGTT-A
1 TATTTAT-TATATTAATATTTAA
68177 TATT
1 TATT
68181 AAAATAAAAT
Statistics
Matches: 261, Mismatches: 29, Indels: 97
0.67 0.07 0.25
Matches are distributed among these distances:
16 6 0.02
17 3 0.01
18 3 0.01
19 27 0.10
20 26 0.10
21 21 0.08
22 22 0.08
23 48 0.18
24 52 0.20
25 31 0.12
26 9 0.03
27 10 0.04
28 3 0.01
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (22 bp):
TATTTATTATATTAATATTTAA
Found at i:67968 original size:31 final size:31
Alignment explanation
Indices: 67857--68019 Score: 119
Period size: 34 Copynumber: 5.2 Consensus size: 31
67847 TATTAATATT
*
67857 TATTATATTAATATTTAT-TATAATTGATAGTTTAA
1 TATTATA-TAATATTTATAT-TTATT-ATA--TTAA
*
67892 TATTA-ATAAATATTAATATTTATTATATTAA
1 TATTATAT-AATATTTATATTTATTATATTAA
67923 TAGTTTAATATAATATTTATATTT-TTATATTAA
1 TA--TT-ATATAATATTTATATTTATTATATTAA
67956 TATATATATAATATTTATA-TTA--ATA-TAA
1 TAT-TATATAATATTTATATTTATTATATTAA
** *
67984 TATTATATTTTA-TTATA-TTATAATATTAA
1 TATTATATAATATTTATATTTATTATATTAA
68013 TAATTAT
1 T-ATTAT
68020 TATAGTTTAA
Statistics
Matches: 111, Mismatches: 5, Indels: 29
0.77 0.03 0.20
Matches are distributed among these distances:
26 8 0.07
27 7 0.06
28 9 0.08
29 7 0.06
30 7 0.06
31 21 0.19
32 1 0.01
33 17 0.15
34 26 0.23
35 8 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (31 bp):
TATTATATAATATTTATATTTATTATATTAA
Found at i:68031 original size:46 final size:49
Alignment explanation
Indices: 67917--68143 Score: 125
Period size: 46 Copynumber: 4.4 Consensus size: 49
67907 ATATTTATTA
*
67917 TATTAATAGTTTAATATAATATTTATATTTTTATATTAATATATATATAATATT
1 TATT-ATAGTTTAATATAATATTT-TA---TTATATTAATATATATATAATAAT
* * *
67971 TA-TATTAATATAATATTATATTTTATTATATT-ATA-ATAT-TAATAAT
1 TATTA-TAGTTTAATATAATATTTTATTATATTAATATATATATAATAAT
68017 TATTATAGTTTAATATAATAGTTTATAGTTTATAGTTTTAATATCATATTTATTAAATTAA-
1 TATTATAGTTTAATATAATA-TTT-TA--TTATA---TTAATAT-ATA--TA-T-AA-TAAT
68078 TATTAATAGTTTAATATAATA-TTTA-TAT-TT-ATAT-TATATTAATAATT
1 TATT-ATAGTTTAATATAATATTTTATTATATTAATATATATA-TAATAA-T
*
68125 TAATTATA-TTTATTATAAT
1 T-ATTATAGTTTAATATAAT
68144 TGATAGTTTA
Statistics
Matches: 143, Mismatches: 8, Indels: 52
0.70 0.04 0.26
Matches are distributed among these distances:
45 3 0.02
46 32 0.22
47 17 0.12
48 8 0.06
49 9 0.06
50 5 0.03
51 4 0.03
52 5 0.03
53 18 0.13
54 5 0.03
56 6 0.04
58 1 0.01
59 2 0.01
60 3 0.02
61 6 0.04
62 19 0.13
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (49 bp):
TATTATAGTTTAATATAATATTTTATTATATTAATATATATATAATAAT
Found at i:68120 original size:36 final size:34
Alignment explanation
Indices: 68039--68137 Score: 96
Period size: 36 Copynumber: 2.8 Consensus size: 34
68029 ATATAATAGT
*
68039 TTATAGTTTATAGTTTTAATATCATA-TT-TATTAAA
1 TTATA-TTAATAG-TTTAATAT-ATATTTATATTAAA
*
68074 TTAATATTAATAGTTTAATATAATATTTATATTTATA
1 TT-ATATTAATAGTTTAATAT-ATATTTATA-TTAAA
*
68111 TTATATTAATAATTTAAT-TATATTTAT
1 TTATATTAATAGTTTAATATATATTTAT
68138 TATAATTGAT
Statistics
Matches: 56, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
34 19 0.34
35 11 0.20
36 20 0.36
37 6 0.11
ACGTcount: A:0.40, C:0.01, G:0.03, T:0.56
Consensus pattern (34 bp):
TTATATTAATAGTTTAATATATATTTATATTAAA
Found at i:68586 original size:182 final size:179
Alignment explanation
Indices: 68182--68976 Score: 646
Period size: 182 Copynumber: 4.4 Consensus size: 179
68172 AGTTATATTA
** ** * * *
68182 AAATAAAATAATA-CCATGTTATTAATATTCTGAAAATTAATAATTAAGAGATTTAAAAAATGAA
1 AAATAAAATAATATAAAT-TTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAA
* * * * * * ** *
68246 TCTATTTA-CCAAACAAGTTTAAATAATTATGGCCATTTGAACAATTAT-TGATTTGGAATCGCA
65 T-TATTTATCGAAA-AAGTTCAAATAGTTATGACTATTTGAATAATTATCT-ATTTCAAATC-TA
* * * * ** *** *
68309 ATAACCTTTTGGTTTGTCATATAATGATT-TTATTTGTTCATATAAGCTTACTTTG
126 ATGACTTTTTGTTTTGTCATAAAACAATTGTT-TCAATTCATACAAGCTTA-TTTG
*
68364 -AATAAAATAATACAAATTTATTAATATT--AAGACAATTAATAAGTAAAAGATTTAAAAAATAA
1 AAATAAAATAATATAAATTTATTAATATTCCAA-A-AATTAATAAGTAAAAGATTTAAAAAATAA
* * * *
68426 ATCTATTTATTGAAAAAATTCAAATCGTTATGACTATTTGAATAATTATTTATTTCAAATTCTAA
64 AT-TATTTATCGAAAAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAA-TCTAA
* * ** * *
68491 TGACTTTTTTGTTTTGTCATAAAATAACTGTTTCCGTCCATACGAGCTTATTTG
127 TGAC-TTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTTG
* * * * * *
68545 GATTAAAATAATATTAATTTATTAATATTTCAACAATTAATAAGTAAAAGATTT-AAAAATATAT
1 AAATAAAATAATATAAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
* * * * *
68609 AAGTTTA-CCAAACAAGTTCAAATAGTCATGACTATTTGAATAATTATCTACTTCAAATC-ATTG
66 TA-TTTATCGAAA-AAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCTAATG
* * ***
68672 TAACATTTTT-TTTTATAATAAAACAATTGTTTCAATTCATGTTAGCTTATTTG
129 --AC-TTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTTG
* * * * *
68725 AAATAAAATGATATTAATTTATTAATATTCCAAAAATTAAAAAGTAAGAGAATTAAAAAAATAAA
1 AAATAAAATAATATAAATTTATTAATATTCCAAAAATTAATAAGTAAAAG-ATTTAAAAAATAAA
* * * *
68790 TATGTTTATCGAACAAGTTCAAATAGTTATGACTATCTT-AATAATTATCTATTTCAAAACATTA
65 T-TATTTATCGAAAAAGTTCAAATAGTTATGACTAT-TTGAATAATTATCTATTTCAAATC-TAA
** * * * * *
68854 CAACCTTTTGTTTTGTCATAAAACAATTGGTTCTATTCATTCAAGCTTATTTC
127 TGACTTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTTG
* * *
68907 AAATAAACTAATATAAATTTATTAAT-TTCCAAAAATTAATAAGTAAAA-ATTTTATAAATAAAG
1 AAATAAAATAATATAAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAA-
68970 TTATTTA
65 TTATTTA
68977 AAAATTAATG
Statistics
Matches: 497, Mismatches: 92, Indels: 51
0.78 0.14 0.08
Matches are distributed among these distances:
179 20 0.04
180 84 0.17
181 186 0.37
182 198 0.40
183 7 0.01
184 2 0.00
ACGTcount: A:0.43, C:0.09, G:0.08, T:0.40
Consensus pattern (179 bp):
AAATAAAATAATATAAATTTATTAATATTCCAAAAATTAATAAGTAAAAGATTTAAAAAATAAAT
TATTTATCGAAAAAGTTCAAATAGTTATGACTATTTGAATAATTATCTATTTCAAATCTAATGAC
TTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTTG
Found at i:69685 original size:181 final size:179
Alignment explanation
Indices: 69027--70146 Score: 651
Period size: 181 Copynumber: 6.2 Consensus size: 179
69017 AATTATTCAG
* * *
69027 AATAAAATAATACTATTTTATTACTATTTTG-AAAATTAATAAG----AGATTTAAAAACTAAAT
1 AATAAAATAATACTAATTTATTAATA-TTTGAAAAATTAATAAGTCAAAGATTTAAAAAATAAAT
** * * * * * * * * **
69087 CTCTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCCAATTGTTATG
65 CAGTTTATCGAATCAGTTCAAATAATCATGACCATTTAAACAATTATCTATTTCAAATCATTATG
* * * * * * *
69152 A-TTTTTGTTTTGTCCTAAAACATTTAATTTCTATTCA-ACAAGCTTAGTC-AG
130 ACCTTTTGTTTTATCATAAAACAATT-ATTTC-A-TCATAAAAGCCTA-TCTAA
* * * * * *
69203 AGTAAAATATTGCTAAATTAATAATATTCT-AAACATTAATAAGT-AAAGATTTAAAAAATAAAT
1 AATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAAGTCAAAGATTTAAAAAATAAAT
** * * * * * * * * *
69266 GTGTTT-GCTGAATTAGTTTAAATAGTTAAGACTA-TTAGAACAATTATCTATTTCAAATCGTTT
65 CAGTTTATC-GAATCAGTTCAAATAATCATGACCATTTA-AACAATTATCTATTTCAAATCATTA
* * *
69329 TGACCTTTTG-TTTAGTCATAAAATAATTATTTCAACTCATACAAGCTTAT-TCAA
128 TGACCTTTTGTTTTA-TCATAAAACAATTATTTC-A-TCATAAAAGCCTATCT-AA
* * * * * *
69383 AA-AAAATAACACTAACTTATTAACA-TTCAGAAAATTATTAAGT--AAGAAATTAGAAAAA-AA
1 AATAAAATAATACTAATTTATTAATATTTGA-AAAATTAATAAGTCAAAG-ATTTA-AAAAATAA
* ** * * *
69443 ATC--TATTA-CTGAA-CAAGTTCAAATATTTTTAACTATTTAAACAATTATCTATTTAAAATCA
63 ATCAGT-TTATC-GAATC-AGTTCAAATAATCATGACCATTTAAACAATTATCTATTTCAAATCA
* * * *
69504 TTATGACCTTATATTTTATCATAAAACAATTATTTCAGTTCGTAAAAGCTTATCTAA
125 TTATGACCTTTTGTTTTATCATAAAACAATTATTTCA--TCATAAAAGCCTATCTAA
** * * * * *
69561 AATAAAATAATGTTACTTTATTAATATTAT-AAAAATTGATAAGTTAGAGATTTAAAACATAAAT
1 AATAAAATAATACTAATTTATTAATATT-TGAAAAATTAATAAGTCAAAGATTTAAAAAATAAAT
*
69625 CAGTTTATCGAATCAGTTCAAATAATCATGGCCATTTAAACAATTATCTATTTCAAATCATTATG
65 CAGTTTATCGAATCAGTTCAAATAATCATGACCATTTAAACAATTATCTATTTCAAATCATTATG
* * * ** * **
69690 AACTTTTGTTTTATCATAAAATAATTGTTTTTCATCATTCAAGCCTATTTCG
130 ACCTTTTGTTTTATCATAAAACAA-T-TATTTCATCATAAAAGCCTATCTAA
*
69742 AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTCAAAGATTTAAAAAATAAATT
1 AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTCAAAGATTTAAAAAATAAATC
* * ** * * * * *
69807 TGTTTATCGAATCAGTTCAAATAGTTGTGACTATTTGAACAATTATATATTTCCAATCATTATAA
66 AGTTTATCGAATCAGTTCAAATAATCATGACCATTTAAACAATTATCTATTTCAAATCATTATGA
* * *
69872 CCTTTTGTTTTGTCATAAAACAATTATTT-ATCTTCACACAAGCTTATTCT-A
131 CCTTTTGTTTTATCATAAAACAATTATTTCATCAT-A-A-AAGCCTA-TCTAA
* * * * * *
69923 AATAAAATACTACTAATCTAGTAATA-TT-AAGAAATTTAATAACTGATAGATTTAAAAAATAAA
1 AATAAAATAATACTAATTTATTAATATTTGAA-AAA-TTAATAAGTCAAAGATTTAAAAAATAAA
** * * * * * * * * * * * * *
69986 TTTGTTTACCAAACCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCCTTAT
64 TCAGTTTATCGAATCAGTTCAAATAATCATGACCATTTAAACAATTATCTATTTCAAATCATTAT
* * * * ** * ** * *
70051 GACTTTTTGTTTTGTTATAAAACAAATGTTTTTGTTCATATAAGTTTGT-TCGA
129 GACCTTTTGTTTTATCATAAAAC-AAT-TATTTCATCATAAAAGCCTATCT-AA
* * *
70104 AATAAAATAATATTAATTTATTAATATTTCAAAATTTAATAAG
1 AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAG
70147 AGATTTAATA
Statistics
Matches: 749, Mismatches: 146, Indels: 93
0.76 0.15 0.09
Matches are distributed among these distances:
175 2 0.00
176 31 0.04
177 3 0.00
178 97 0.13
179 161 0.21
180 50 0.07
181 376 0.50
182 13 0.02
183 13 0.02
184 3 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (179 bp):
AATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTCAAAGATTTAAAAAATAAATC
AGTTTATCGAATCAGTTCAAATAATCATGACCATTTAAACAATTATCTATTTCAAATCATTATGA
CCTTTTGTTTTATCATAAAACAATTATTTCATCATAAAAGCCTATCTAA
Found at i:69917 original size:362 final size:355
Alignment explanation
Indices: 69026--70224 Score: 1063
Period size: 362 Copynumber: 3.3 Consensus size: 355
69016 AAATTATTCA
* * ** *
69026 GAATAAAATAATACTATTTTATTACTATTTTGAAAATTAATAAG--AGATTTAAAAACTAAATCT
1 GAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATTTAAAAAATAAATCT
* **
69089 CTTTACCGAACCAGTTCAAATAGTTATGACTATTTGAACAATTATCTATCTCCAATTGTTATGA-
66 -TTTA-CGAA-CAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCCAATCATTATGAC
* * * * * * *
69153 TTTTTGTTTTGTCCTAAAACATTTAATTTCTATTCAACAAGCTTAGTC-AGAGTAAAATATTGCT
128 CTTTTGTTTTGTCATAAAACAATT-ATTTATATTCAACAAGCTTAGTCTAAAATAAAATAATGCT
* * * * * * *
69217 AAATTAATAATATTCTAAACATTAATAAG-TAAAGATTTAAAAAATAAATGTGTTTGCTGAATTA
192 AATTTAATAATATTATAAAAATTAATAAGTTAAAGATTTAAAAAATAAATCTGTTTACCGAATCA
* * * * *
69281 GTTTAAATAGTTAAGACTA-TTAGAACAATTATCTATTTCAAATCGTTTTGACCTTTTG-TTTAG
257 GTTCAAATAGTTAAGGCTATTTA-AACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTA-
* *
69344 TCATAAAATAAT-TATTTCAACTCATACAAGCT-TATTC
320 TCATAAAATAATGTTTTTC-A-TCATTCAAGCTAT-TTC
* * * * * * *
69381 AAAAAAAATAACACTAACTTATTAACA-TTCAGAAAATTATTAAGTAAGAAATTAGAAAAA-AAA
1 GAATAAAATAATACTAATTTATTAATATTTCA-AAAATTAATAAGTAAG-ATTTA-AAAAATAAA
* * * * * **
69444 TCTATTACTGAACAAGTTCAAATATTTTTAACTATTTAAACAATTATCTATTTAAAATCATTATG
63 TCTTTTAC-GAAC-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCCAATCATTATG
* * * *
69509 ACCTTATATTTTATCATAAAACAATTATTTCA-GTTCGTAA-AAGCTTA-TCTAAAATAAAATAA
126 ACCTTTTGTTTTGTCATAAAACAATTATTT-ATATTC--AACAAGCTTAGTCTAAAATAAAATAA
* * * * * * * *
69571 TGTTACTTTATTAATATTATAAAAATTGATAAGTTAGAGATTTAAAACATAAATCAGTTTATCGA
188 TGCTAATTTAATAATATTATAAAAATTAATAAGTTAAAGATTTAAAAAATAAATCTGTTTACCGA
* * * *
69636 ATCAGTTCAAATAATCATGGCCATTTAAACAATTATCTATTTCAAATCATTATGAACTTTTGTTT
253 ATCAGTTCAAATAGTTAAGGCTATTTAAACAATTATCTATTTCAAATCATTATGAACTTTTGTTT
69701 TATCATAAAATAATTGTTTTTCATCATTCAAGCCTATTTC
318 TATCATAAAATAA-TGTTTTTCATCATTCAAG-CTATTTC
*
69741 GAATAAAATAATACTAATTTATTAATATTTGAAAAATTAATAAGTCAAAGATTTAAAAAATAAAT
1 GAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGT--AAGATTTAAAAAATAAAT
* * * *
69806 TTGTTTATCGAATCAGTTCAAATAGTTGTGACTATTTGAACAATTATATATTTCCAATCATTATA
64 CT-TTTA-CGAA-CAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCCAATCATTATG
* * * *
69871 ACCTTTTGTTTTGTCATAAAACAATTATTTATCTTCACACAAGCTTATTCT-AAATAAAATACTA
126 ACCTTTTGTTTTGTCATAAAACAATTATTTATATTCA-ACAAGCTTAGTCTAAAATAAAATAATG
* * * * * * * *
69935 CTAATCTAGTAATATTA-AGAAATTTAATAACTGATAGATTTAAAAAATAAATTTGTTTACCAAA
190 CTAATTTAATAATATTATA-AAAATTAATAAGTTAAAGATTTAAAAAATAAATCTGTTTACCGAA
* * * * * *
69999 CCAATTCAAATAGTTAAGGCTATATGAATAATTATCTATTTCAAATCCTTATG-ACTTTTTGTTT
254 TCAGTTCAAATAGTTAAGGCTATTTAAACAATTATCTATTTCAAATCATTATGAAC-TTTTGTTT
* * * ** *
70063 TGTTATAAAACAAATGTTTTTGTTCATAT-AAG-TTTGTTC
318 TATCATAAAA-TAATGTTTTTCATCAT-TCAAGCTAT-TTC
* * *
70102 GAAATAAAATAATATTAATTTATTAATATTTCAAAATTTAATAAG--AGATTTAATAAATAAATC
1 G-AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATTTAAAAAATAAATC
* * * * * * *
70165 TATTTACCATACTAGTTCAATTAGTTATAACAATTTGAACATTTATTTATTTCAAATCAT
65 T-TTTACGA-AC-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCCAATCAT
70225 ACTAAATTAA
Statistics
Matches: 679, Mismatches: 127, Indels: 73
0.77 0.14 0.08
Matches are distributed among these distances:
354 2 0.00
355 31 0.05
356 2 0.00
357 63 0.09
358 132 0.19
359 97 0.14
360 56 0.08
361 27 0.04
362 261 0.38
363 8 0.01
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.40
Consensus pattern (355 bp):
GAATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAAGATTTAAAAAATAAATCT
TTTACGAACAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCCAATCATTATGACCTT
TTGTTTTGTCATAAAACAATTATTTATATTCAACAAGCTTAGTCTAAAATAAAATAATGCTAATT
TAATAATATTATAAAAATTAATAAGTTAAAGATTTAAAAAATAAATCTGTTTACCGAATCAGTTC
AAATAGTTAAGGCTATTTAAACAATTATCTATTTCAAATCATTATGAACTTTTGTTTTATCATAA
AATAATGTTTTTCATCATTCAAGCTATTTC
Found at i:70968 original size:180 final size:181
Alignment explanation
Indices: 70504--71153 Score: 526
Period size: 181 Copynumber: 3.6 Consensus size: 181
70494 TAAAGATTTG
* * * * * * * *
70504 TTTTGTCATAAAACAATTGTTTTTGTTAATATAAGTTTGTTT-GAAATAAAATAATATTGTTTTA
1 TTTTATCATAAAACAATTGGTTATGTTCATACAAGCTTATTTAG-AATAAAATAATATTGATTTA
* * ** * * *
70568 TTAATATTTAGAAACTCAATCTGTAAGAGATTTAAAAAAAAAATCTACTTATCAAACCATTTCAA
65 ATAATATTTAGAAACTTAATAAGTAAGAGATTTAAAAAATAAATCTAATTATCAAACCAGTTCAA
** * *
70633 ATAGTTTTGACTATTTCAATAATTATTTATTTCAAATCATTATAACATTTTA
130 ATAGTTAAGACTATATCAATAATTATCTATTTCAAATCATTATAACATTTTA
* * ** * *
70685 TTTTATCATCAAACAATTGGTTATGTTCATACTATTTTATTTAGAATAAAATAATACTAATTTAA
1 TTTTATCATAAAACAATTGGTTATGTTCATACAAGCTTATTTAGAATAAAATAATATTGATTTAA
** * * * **
70750 TAATATTTAGAAACTTAATAACCAAGAAAATTAAAAAATAAATCTAATTGTTGAACCAGTTCAAA
66 TAATATTTAGAAACTTAATAAGTAAGAGATTTAAAAAATAAATCTAATTATCAAACCAGTTCAAA
* * * * * *
70815 TAGTTAAGACTCTATGAATTATTATCTATTTCAAATCATTATGACCTTTTC
131 TAGTTAAGACTATATCAATAATTATCTATTTCAAATCATTATAACATTTTA
* * * ** * *
70866 TTTTAAT-GTAAAATAATT-GTTTTGTTTGTACAAGCTTATTTGGATTAAAATAATATTGATTTA
1 TTTT-ATCATAAAACAATTGGTTATGTTCATACAAGCTTATTTAGAATAAAATAATATTGATTTA
* * * ** *
70929 ATAATATTTTGAAAATTAATAAGTAAGAGATTTAAAAAATAAATTTGTTTA-CTAAATCAGTTCA
65 ATAATATTTAGAAACTTAATAAGTAAGAGATTTAAAAAATAAATCTAATTATC-AAACCAGTTCA
* * * * * * *
70993 AATGGTTAAAATTAT-TAGAATAATTATCTATTTCATATCATTTTGATC-TTTT-
129 AATAGTTAAGACTATAT-CAATAATTATCTATTTCAAATCATTAT-AACATTTTA
* ** * * * *
71045 GTTTAGTCATAAAACAATTATTTCA-GTTCATATAAGCTTATTCAGAATAAATTAATATTAATTT
1 TTTTA-TCATAAAACAATTGGTT-ATGTTCATACAAGCTTATTTAGAATAAAATAATATTGATTT
* * * * * *
71109 ATTAACATATGGAAA-TTAATATGAAAGAGATTTAAAAAAATAAAT
64 AATAATATTTAGAAACTTAATAAGTAAGAGATTT-AAAAAATAAAT
71154 TTGTTTACCG
Statistics
Matches: 369, Mismatches: 90, Indels: 20
0.77 0.19 0.04
Matches are distributed among these distances:
178 1 0.00
179 5 0.01
180 149 0.40
181 211 0.57
182 3 0.01
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (181 bp):
TTTTATCATAAAACAATTGGTTATGTTCATACAAGCTTATTTAGAATAAAATAATATTGATTTAA
TAATATTTAGAAACTTAATAAGTAAGAGATTTAAAAAATAAATCTAATTATCAAACCAGTTCAAA
TAGTTAAGACTATATCAATAATTATCTATTTCAAATCATTATAACATTTTA
Done.