genome.fa.s647.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168472.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_71, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  128422

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3668--4039	193	1.9	192	95	1	665	36	15	11	36	1.84
4104--4133	12	2.5	12	94	0	51	30	0	0	70	0.88
4180--4979	209	3.9	204	88	5	1141	33	13	8	44	1.74
5733--5770	18	2.0	20	85	10	53	13	5	13	68	1.37
5864--5908	23	2.0	22	83	8	56	26	15	13	44	1.83
6028--6062	11	3.2	11	84	15	54	2	0	14	82	0.77
6745--6864	8	14.9	8	68	11	66	19	2	28	50	1.61
6746--6864	16	7.4	15	73	11	94	18	2	28	50	1.60
8923--8981	3	19.3	3	85	3	82	72	0	0	27	0.84
9821--9870	5	9.8	5	83	12	66	24	0	0	76	0.80
9819--9884	10	6.3	10	74	20	55	27	0	0	72	0.85
9847--9879	15	2.1	16	88	5	50	33	0	0	66	0.92
11315--11378	20	3.2	20	80	13	78	18	0	10	70	1.16
12264--12293	16	1.9	16	93	6	53	16	0	6	76	0.99
12614--12663	26	2.0	25	84	11	66	46	6	10	38	1.62
14697--14726	15	2.0	15	100	0	60	33	6	20	40	1.78
23185--23212	2	14.0	2	100	0	56	50	0	0	50	1.00
27046--27103	28	2.1	28	86	0	80	39	15	12	32	1.84
27498--27535	20	1.9	20	84	10	51	31	26	0	42	1.56
34874--34942	36	1.9	35	82	2	84	37	17	13	31	1.88
38183--38481	153	1.9	154	88	4	453	40	8	6	44	1.61
38927--38977	23	2.2	23	83	13	61	58	5	1	33	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41100--41144	22	2.0	22	86	0	63	53	0	11	35	1.37
41157--41243	22	4.0	21	79	8	86	56	8	3	32	1.45
41154--41303	65	2.3	66	75	14	157	54	6	7	32	1.53
41287--41347	22	2.8	22	80	7	70	47	4	6	40	1.51
41813--42472	22	29.9	22	68	11	170	46	7	9	36	1.64
42347--42520	66	2.6	66	79	1	170	46	8	7	37	1.62
42368--42516	22	6.8	21	76	10	104	47	6	6	39	1.54
42368--42516	44	3.4	44	83	3	149	47	6	6	39	1.54
42434--42549	22	5.3	21	72	9	63	46	6	10	37	1.63
42792--42870	22	3.5	22	81	5	88	46	6	10	36	1.63
42792--42845	23	2.4	23	90	3	83	46	7	9	37	1.64
42899--42949	22	2.3	22	86	0	66	52	7	1	37	1.42
42999--43116	22	5.4	22	76	8	107	45	8	5	40	1.56
42986--43112	44	2.9	43	77	6	130	44	8	6	40	1.60
42986--43149	22	7.5	22	76	2	105	47	9	5	37	1.59
49346--49387	18	2.3	18	84	8	50	28	4	2	64	1.26
49791--49840	25	2.0	25	92	0	82	12	20	38	30	1.88
50705--50780	9	9.4	8	71	17	59	14	0	7	77	0.98
50709--50738	13	2.3	13	94	0	51	10	0	3	86	0.67
50705--50780	17	4.2	17	83	8	71	14	0	7	77	0.98
50735--50790	17	3.2	17	85	9	69	16	0	10	73	1.10
50705--50790	17	5.4	16	79	16	65	15	0	8	76	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50946--50974	10	2.7	11	94	5	51	0	10	0	89	0.48
50946--50977	12	2.7	12	90	0	55	0	9	0	90	0.45
51068--51458	49	8.0	49	82	4	423	37	21	13	27	1.91
51068--51458	100	4.0	97	82	4	439	37	21	13	27	1.91
59448--59532	42	2.0	42	97	0	161	16	18	17	47	1.84
62119--62148	5	6.2	5	92	7	53	0	0	20	80	0.72
63337--63374	12	3.3	12	89	7	53	36	0	0	63	0.95
64013--64064	25	2.1	25	85	0	68	3	19	46	30	1.68
64933--64979	24	2.0	24	91	0	76	17	0	6	76	0.98
64943--64980	17	2.2	17	90	0	58	15	0	7	76	1.01
68104--68180	17	4.6	16	78	13	75	49	36	0	14	1.43
68092--68164	34	2.1	35	82	9	98	46	34	0	19	1.50
68141--68189	17	2.8	17	84	3	62	53	36	0	10	1.35
68252--68304	14	3.5	15	80	19	58	47	35	0	16	1.48
68254--68315	30	2.1	29	85	8	81	51	33	0	14	1.43
73456--73495	19	2.2	18	90	4	62	87	7	5	0	0.66
75358--76039	121	5.7	121	92	2	1042	30	15	16	37	1.90
76130--76196	21	3.1	21	84	4	89	26	25	20	26	1.99
76132--76219	23	4.0	23	82	4	101	26	25	20	28	1.99
76022--76343	153	2.1	155	90	2	508	26	22	18	32	1.97
76285--76351	23	3.0	23	95	2	118	22	26	23	26	2.00
76151--76458	132	2.4	131	89	1	465	26	22	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76422--76502	22	3.7	22	71	15	69	27	20	19	32	1.97
76414--76501	43	2.0	43	84	4	115	27	21	19	31	1.97
76571--76652	23	3.6	23	91	4	123	26	23	19	30	1.98
77011--77044	11	3.2	11	87	4	52	29	50	8	11	1.69
77248--77300	6	8.7	6	82	10	54	83	11	5	0	0.81
77248--77299	20	2.5	20	84	3	68	82	11	5	0	0.82
77248--77298	26	2.0	26	88	0	75	82	11	5	0	0.83
78351--78419	35	2.0	35	85	5	95	49	37	0	13	1.42
78390--78428	8	4.8	8	81	6	51	58	33	0	7	1.26
78350--78420	17	4.1	17	80	8	90	50	36	0	12	1.41
78491--78519	14	2.0	15	93	6	51	48	41	0	10	1.37
78493--78542	16	3.3	15	81	15	50	50	36	2	12	1.51
79875--79923	20	2.5	20	86	0	71	55	10	12	22	1.66
84825--84886	27	2.3	26	83	5	79	30	4	1	62	1.25
84915--84954	16	2.5	16	88	8	55	7	0	12	80	0.91
85682--85708	11	2.5	11	100	0	54	7	0	14	77	0.97
85783--85936	54	2.8	55	86	7	206	42	5	11	40	1.66
85994--86026	14	2.3	15	94	5	59	60	6	0	33	1.21
89215--89632	60	6.9	57	82	10	478	32	13	8	45	1.74
89651--89707	27	2.1	27	87	6	80	73	0	10	15	1.09
89673--89726	17	3.2	17	73	17	58	74	3	9	12	1.20
89749--89790	22	1.9	22	85	9	59	80	2	2	14	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90715--90849	3	42.7	3	71	22	66	63	3	0	32	1.12
90663--90852	50	3.6	55	71	16	150	65	4	0	29	1.17
91039--91089	1	51.0	1	80	0	57	0	0	9	90	0.46
91039--91089	10	5.3	10	86	6	70	0	0	9	90	0.46
91039--91089	14	3.4	16	81	13	72	0	0	9	90	0.46
91039--91088	21	2.4	20	87	9	73	0	0	10	90	0.47
91042--91081	11	3.6	11	90	10	64	0	0	10	90	0.47
91096--91434	41	8.1	41	87	7	436	37	22	17	23	1.94
91096--91434	83	4.1	81	88	5	457	37	22	17	23	1.94
92638--92738	24	4.4	23	76	17	86	5	15	0	78	0.94
92667--92711	13	3.5	13	85	14	58	0	13	0	86	0.57
92640--92711	8	9.1	8	80	8	67	4	15	0	80	0.86
92678--92712	9	3.9	9	92	0	61	0	11	0	88	0.51
92678--92711	17	1.9	18	94	5	61	0	11	0	88	0.52
92651--92738	29	3.1	27	76	14	70	5	14	0	79	0.91
92675--92738	15	4.3	15	77	16	53	4	12	0	82	0.81
96585--96996	57	6.9	60	80	12	426	32	12	8	46	1.72
97014--97080	6	11.7	6	74	17	54	79	0	4	16	0.90
97014--97138	14	8.7	14	73	11	76	76	3	3	17	1.06
97013--97056	24	1.9	22	90	9	70	72	0	9	18	1.10
97106--97145	20	2.0	20	95	0	71	87	5	0	7	0.66
97152--97182	5	6.2	5	92	0	53	3	38	38	19	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97612--97663	25	2.1	25	85	7	70	36	17	5	40	1.73
100072--100325	43	5.9	43	77	9	171	24	13	21	40	1.89
100087--100274	86	2.2	86	81	7	227	25	14	21	38	1.91
100610--100646	19	1.9	19	88	0	56	21	2	2	72	1.09
100533--100640	27	3.9	27	78	11	105	27	4	1	65	1.22
100918--100961	21	2.1	21	86	0	61	29	0	15	54	1.42
101495--101747	137	1.9	132	82	10	320	46	7	12	33	1.70
101657--101691	15	2.4	15	90	4	54	65	8	0	25	1.21
101563--101749	70	2.7	68	74	13	177	47	8	13	31	1.73
101688--101908	61	3.7	60	76	14	156	47	7	14	29	1.73

Tables:   1   2