Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168474.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_73, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125844
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
File 1 of 3
Found at i:361 original size:181 final size:182
Alignment explanation
Indices: 54--922 Score: 775
Period size: 181 Copynumber: 4.8 Consensus size: 182
44 TCTTAGTAAC
* * * * * * * *
54 TTATTCGGAATAAAGTAAAACAAATTTATTAATATTTCAAAACTTAACAAGCAAGAGATTTAAAA
1 TTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGCAAGAAATTTAAAA
* * * *
119 AATAATTCAGTTTGC-CTAACCAGTTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA
66 AATAAATCTGTTTACTCTAACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA
* ** * * * *
183 TCATTATGTTCTTTTATTTTGTCCTAAAACAAATGTTTTTGTACATATAAGT
131 TCACTATGACCTTTTGTTTTGTCCTAAAACAAATGTTTCTGTTCATACAAGT
* * *
235 TTATTCGAAATAAAATAATATTAATTTATTAATATTTTGAAAATTAAGAAGCAAGAAATTTAAAA
1 TTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGCAAGAAATTTAAAA
* * * * * *
300 AGTAAAACTGTTTACTC-AACCAATTCAATTAGTTATAACTATTTGAACAATTATTTATTTCAAA
66 AATAAATCTGTTTACTCTAACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA
* * * * * *
364 TCACTATGACCATTTGTATTGTCATAAAATAATTATTTCTGTTCATACAA-T
131 TCACTATGACCTTTTGTTTTGTCCTAAAACAAATGTTTCTGTTCATACAAGT
* * * * * *
415 CTTATTCGAAATAAAGTAATACTAATTTATCAATATTTT-GAAATTAATAAGTAATAGATTTAAA
1 -TTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGCAAGAAATTTAAA
* ** * * * * *
479 AAATGAATC-AATTAGC-CTGACCAGTTCAAATAGTTATGACTGTTTGAATAATTATCTATTTCA
65 AAATAAATCTGTTTA-CTCTAACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCA
* * * * ** * *
542 AATCATTATGACATTTTGTTTTATCAC-AAAACAATTGTTTCTGTTTGTACTAGC
129 AATCACTATGACCTTTTGTTTTGTC-CTAAAACAAATGTTTCTGTTCATACAAGT
* * * * *
596 TTATTTGAAATAATATAATTCTATTTTATTAATATTCTAAAAATTAATAAG--AG--ATTTAAAA
1 TTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGCAAGAAATTTAAAA
* * * * **
657 AATAAATATGTTTA-TC-AAACAAGTACAAATAATTATGACTATTTGAATAATTATCTATTTTTA
66 AATAAATCTGTTTACTCTAACCAA-TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAA
* *
720 ATCACTATAACCTTTTGTTTTGTCCTAAAACAAAAT-TTTCTATTCATACAAGT
130 ATCACTATGACCTTTTGTTTTGTCCTAAAAC-AAATGTTTCTGTTCATACAAGT
* * * * *
773 TTATTTC-AAATAAAATTATACAAATTTATTAATA-TTCAAACAAGTAATAAGTAA-AAGATTTA
1 TTA-TTCGAAATAAAATAATACTAATTTATTAATATTTTAAA-AATTAATAAGCAAGAA-ATTTA
* * ** * *
835 AAAAATAAATCTATTTA-TCAAATAAATTTAAATAATTATGACTATTTGAACAATTATTTTATTT
63 AAAAATAAATCTGTTTACTCTAACCAATTCAAATAATTATGACTATTTGAACAATTA-TCTATTT
*** *
899 CAAATTGTTATGACTTTTTGTTTT
127 CAAATCACTATGACCTTTTGTTTT
923 CTCATGACAC
Statistics
Matches: 547, Mismatches: 120, Indels: 41
0.77 0.17 0.06
Matches are distributed among these distances:
176 8 0.01
177 121 0.22
178 8 0.01
179 6 0.01
180 137 0.25
181 239 0.44
182 28 0.05
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.41
Consensus pattern (182 bp):
TTATTCGAAATAAAATAATACTAATTTATTAATATTTTAAAAATTAATAAGCAAGAAATTTAAAA
AATAAATCTGTTTACTCTAACCAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA
TCACTATGACCTTTTGTTTTGTCCTAAAACAAATGTTTCTGTTCATACAAGT
Found at i:716 original size:16 final size:17
Alignment explanation
Indices: 684--716 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
674 AACAAGTACA
684 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
702 AATAATTAT-CTATTT
1 AATAATTATACTATTT
717 TTAATCACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:1869 original size:26 final size:26
Alignment explanation
Indices: 1840--1906 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
1830 AATACTTATA
1840 ATTTATTATTAATTATTTGAA-TATTG
1 ATTT-TTATTAATTATTTGAATTATTG
* * *
1866 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATTTGAATTATTG
1893 ATTTTTATTAATTA
1 ATTTTTATTAATTA
1907 ATAGATATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.06
26 21 0.62
27 11 0.32
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (26 bp):
ATTTTTATTAATTATTTGAATTATTG
Found at i:2079 original size:16 final size:17
Alignment explanation
Indices: 2047--2079 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
2037 TGTTTAGGTC
2047 ATAATTATTTAAAATAA
1 ATAATTATTTAAAATAA
*
2064 ATAATT-TTTCAAATAA
1 ATAATTATTTAAAATAA
2080 TCACAATTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAATTATTTAAAATAA
Found at i:2299 original size:22 final size:22
Alignment explanation
Indices: 2271--2313 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
2261 TTATATTTAT
*
2271 AAATATTAAAATTATTATAATA
1 AAATATTAAAATTATAATAATA
**
2293 AAATATTGTAATTATAATAAT
1 AAATATTAAAATTATAATAAT
2314 TGTTTATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
AAATATTAAAATTATAATAATA
Found at i:2439 original size:25 final size:28
Alignment explanation
Indices: 2392--2444 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
2382 AATACTAATT
2392 TAATAATATTTCATAATAGTTA-TATTTG
1 TAATAATATTTCATAATA-TTATTATTTG
*
2420 TAATAATA-TTGATAAT-TTATTATTT
1 TAATAATATTTCATAATATTATTATTT
2445 ATATATTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 3 0.13
26 5 0.22
27 7 0.30
28 8 0.35
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.53
Consensus pattern (28 bp):
TAATAATATTTCATAATATTATTATTTG
Found at i:2549 original size:12 final size:13
Alignment explanation
Indices: 2517--2561 Score: 51
Period size: 12 Copynumber: 3.7 Consensus size: 13
2507 ATTATATATA
2517 ATATTAATAAA-T
1 ATATTAATAAATT
* *
2529 ATAAT-ATAATTT
1 ATATTAATAAATT
2541 ATA-TAATAAATT
1 ATATTAATAAATT
2553 ATATTAATA
1 ATATTAATA
2562 TAATGACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
11 5 0.19
12 17 0.63
13 5 0.19
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATTAATAAATT
Found at i:2564 original size:18 final size:18
Alignment explanation
Indices: 2483--2565 Score: 61
Period size: 18 Copynumber: 4.7 Consensus size: 18
2473 AATATTAACT
2483 TATTAATTATACATAT-ATA
1 TATTAA-TATA-ATATAATA
*
2502 TGTTAAT-T-ATAT-ATAA
1 TATTAATATAATATAAT-A
2518 TATTAATA-AATATAATA
1 TATTAATATAATATAATA
*
2535 TAATTTATATAATA-AATTA
1 T-ATTAATATAATATAA-TA
2554 TATTAATATAAT
1 TATTAATATAAT
2566 GACATTAAAT
Statistics
Matches: 53, Mismatches: 4, Indels: 15
0.74 0.06 0.21
Matches are distributed among these distances:
15 6 0.11
16 7 0.13
17 7 0.13
18 21 0.40
19 12 0.23
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (18 bp):
TATTAATATAATATAATA
Found at i:2790 original size:33 final size:33
Alignment explanation
Indices: 2700--2782 Score: 89
Period size: 33 Copynumber: 2.5 Consensus size: 33
2690 CTATCTCAAT
* * *
2700 TTATAATTATTAATAATAACTATATATTAATTATA
1 TTATAATAATTAA-AA-AACTATTTAATAATTATA
*
2735 TTATAATAATTAATAAACTATTTAATAATT-TA
1 TTATAATAATTAAAAAACTATTTAATAATTATA
*
2767 TTATTAT-ATTAAAAAA
1 TTATAATAATTAAAAAA
2783 ATCTATTTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
31 8 0.19
32 8 0.19
33 13 0.31
34 1 0.02
35 12 0.29
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (33 bp):
TTATAATAATTAAAAAACTATTTAATAATTATA
Found at i:3434 original size:44 final size:44
Alignment explanation
Indices: 3380--3470 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
3370 TGAATAAGAG
3380 ATTTAAAAATAAATAA-T-G-ATTAATTTATTTCAATTATAAATAAT
1 ATTTAAAAATAAATAATTGGAATTAA---ATTTCAATTATAAATAAT
* *
3424 ATTTATAAATAAATAATTGGAATTAAATTTCAATTATTAATAAT
1 ATTTAAAAATAAATAATTGGAATTAAATTTCAATTATAAATAAT
3468 ATT
1 ATT
3471 AGTAATTTTA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
44 35 0.83
45 1 0.02
46 1 0.02
47 5 0.12
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (44 bp):
ATTTAAAAATAAATAATTGGAATTAAATTTCAATTATAAATAAT
Found at i:3494 original size:26 final size:26
Alignment explanation
Indices: 3461--3515 Score: 94
Period size: 26 Copynumber: 2.1 Consensus size: 26
3451 TTTCAATTAT
3461 TAATAATATTAGTAATTTTAA-GCTTA
1 TAATAATATTA-TAATTTTAACGCTTA
3487 TAATAATATTATAATTTTAACGCTTA
1 TAATAATATTATAATTTTAACGCTTA
3513 TAA
1 TAA
3516 AATTTTAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 9 0.32
26 19 0.68
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.45
Consensus pattern (26 bp):
TAATAATATTATAATTTTAACGCTTA
Found at i:4430 original size:12 final size:12
Alignment explanation
Indices: 4364--4432 Score: 55
Period size: 12 Copynumber: 6.2 Consensus size: 12
4354 ATATAATAAC
4364 TATA-TATATTA
1 TATATTATATTA
*
4375 TATAGT-TATTA
1 TATATTATATTA
4386 -ATATTCATATTA
1 TATATT-ATATTA
4398 -ATA--AT-TTA
1 TATATTATATTA
4406 TATATTA-ATTTA
1 TATATTATA-TTA
4418 TATATTATATTA
1 TATATTATATTA
4430 TAT
1 TAT
4433 TGAATACTAC
Statistics
Matches: 48, Mismatches: 1, Indels: 17
0.73 0.02 0.26
Matches are distributed among these distances:
8 3 0.06
9 5 0.10
10 4 0.08
11 10 0.21
12 25 0.52
13 1 0.02
ACGTcount: A:0.42, C:0.01, G:0.01, T:0.55
Consensus pattern (12 bp):
TATATTATATTA
Found at i:5101 original size:17 final size:18
Alignment explanation
Indices: 5061--5101 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
5051 AATATATGAT
*
5061 TATAATTTTATTATAATA
1 TATAATTTTATCATAATA
5079 -ATTAATTTT-TCATAATA
1 TA-TAATTTTATCATAATA
5096 TATAAT
1 TATAAT
5102 CTTAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATAATTTTATCATAATA
Found at i:6005 original size:16 final size:17
Alignment explanation
Indices: 5986--6020 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
5976 AAATATTATT
5986 TATAAATAA-TAATATA
1 TATAAATAACTAATATA
*
6002 TATAAATAACTATTATA
1 TATAAATAACTAATATA
6019 TA
1 TA
6021 AGTTATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAAATAACTAATATA
Found at i:6044 original size:27 final size:29
Alignment explanation
Indices: 6014--6074 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
6004 TAAATAACTA
6014 TTATATAAG-T-TATTATTTTAAAAATAG
1 TTATATAAGATATATTATTTTAAAAATAG
* *
6041 TTATATTAGATAACTATTATTTTATAAATAG
1 TTATATAAGAT-A-TATTATTTTAAAAATAG
6072 TTA
1 TTA
6075 ATTTATATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 8 0.29
28 1 0.04
31 19 0.68
ACGTcount: A:0.43, C:0.02, G:0.07, T:0.49
Consensus pattern (29 bp):
TTATATAAGATATATTATTTTAAAAATAG
Found at i:6203 original size:18 final size:18
Alignment explanation
Indices: 6192--6233 Score: 52
Period size: 16 Copynumber: 2.4 Consensus size: 18
6182 ATATTATTTA
6192 ATAATTAAATATCATATT
1 ATAATTAAATATCATATT
* *
6210 ATAATTAGATA--ATATC
1 ATAATTAAATATCATATT
6226 ATAATTAA
1 ATAATTAA
6234 TGATATTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 11 0.52
18 10 0.48
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (18 bp):
ATAATTAAATATCATATT
Found at i:6740 original size:13 final size:13
Alignment explanation
Indices: 6722--6746 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
6712 TATATAACTT
6722 TATTTAAATTTTC
1 TATTTAAATTTTC
6735 TATTTAAATTTT
1 TATTTAAATTTT
6747 AATATTATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTTAAATTTTC
Found at i:7286 original size:13 final size:12
Alignment explanation
Indices: 7247--7282 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
7237 ATATTTCTAT
7247 TTAAAT-ATTAA
1 TTAAATAATTAA
7258 TTCAAATAATTAA
1 TT-AAATAATTAA
7271 TTAAATAATTAA
1 TTAAATAATTAA
7283 ATTATTTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.09
12 14 0.61
13 7 0.30
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAAATAATTAA
Found at i:7346 original size:16 final size:15
Alignment explanation
Indices: 7325--7367 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
7315 TTTTAACTAC
7325 GTAATTATAATTATAT
1 GTAATTATAATTA-AT
*
7341 GTAATTATAA-CAAT
1 GTAATTATAATTAAT
*
7355 ATAATTATAATTA
1 GTAATTATAATTA
7368 CAATTTCTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 11 0.48
15 2 0.09
16 10 0.43
ACGTcount: A:0.49, C:0.02, G:0.05, T:0.44
Consensus pattern (15 bp):
GTAATTATAATTAAT
Found at i:7440 original size:14 final size:15
Alignment explanation
Indices: 7407--7447 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
7397 ATTTATTATT
*
7407 TAATTATAAATT-AA
1 TAATTATAATTTAAA
7421 TAATTATAATTTAAA
1 TAATTATAATTTAAA
*
7436 T-ATTATATTTTA
1 TAATTATAATTTA
7448 GTATGATTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 21 0.88
15 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TAATTATAATTTAAA
Found at i:7829 original size:24 final size:24
Alignment explanation
Indices: 7802--7847 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7792 CTTTATTTTG
7802 TTTATCT-AAATCTAATCAAATTAT
1 TTTATCTCAAAT-TAATCAAATTAT
* *
7826 TTTATTTCAAATTAATTAAATT
1 TTTATCTCAAATTAATCAAATT
7848 TAAATTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 15 0.79
25 4 0.21
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (24 bp):
TTTATCTCAAATTAATCAAATTAT
Found at i:8320 original size:27 final size:28
Alignment explanation
Indices: 8282--8335 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
8272 AATTGTTATA
* *
8282 AATTGGTATTAAATTATAATATTTAATT
1 AATTGGTATTAAATAATAATAATTAATT
8310 AATTGGT-TTAAATAATAATAATTAAT
1 AATTGGTATTAAATAATAATAATTAAT
8336 AAGTTTTGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.46, C:0.00, G:0.07, T:0.46
Consensus pattern (28 bp):
AATTGGTATTAAATAATAATAATTAATT
Found at i:8859 original size:21 final size:19
Alignment explanation
Indices: 8817--8868 Score: 50
Period size: 20 Copynumber: 2.6 Consensus size: 19
8807 AACTAACATT
*
8817 ATAATATTATATTTATAATA
1 ATAATATTA-ATTAATAATA
*
8837 ATTAATATTAATTAATTATTA
1 A-TAATATTAATTAA-TAATA
*
8858 ATAAAATTAAT
1 ATAATATTAAT
8869 ATATAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 14 0.52
21 13 0.48
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
ATAATATTAATTAATAATA
Found at i:9527 original size:16 final size:16
Alignment explanation
Indices: 9502--9532 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9492 TAACGATTTG
9502 AAATAGATAATTATTC
1 AAATAGATAATTATTC
*
9518 AAATATATAATTATT
1 AAATAGATAATTATT
9533 TGTATATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (16 bp):
AAATAGATAATTATTC
Found at i:9620 original size:30 final size:30
Alignment explanation
Indices: 9580--9646 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
9570 ATTAATCTAG
*
9580 TTAA-TATAATATAACTA-ATAATAATTCA
1 TTAATTATAATATAACTACATAATAATTAA
* *
9608 TATAATTATAATATAATTACTTAATAATTAA
1 T-TAATTATAATATAACTACATAATAATTAA
9639 TTAATTAT
1 TTAATTAT
9647 TATAACATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
28 1 0.03
29 3 0.09
30 19 0.58
31 10 0.30
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (30 bp):
TTAATTATAATATAACTACATAATAATTAA
Found at i:9917 original size:17 final size:17
Alignment explanation
Indices: 9859--9924 Score: 52
Period size: 17 Copynumber: 4.1 Consensus size: 17
9849 TATTAATATA
*
9859 AATTAA-AATAAT-TTT
1 AATTAATAATATTATTT
*
9874 AATT-TTAATATTA--T
1 AATTAATAATATTATTT
* *
9888 AATTTAATTATATTGTTT
1 AA-TTAATAATATTATTT
9906 AATTAATAATATTATTT
1 AATTAATAATATTATTT
9923 AA
1 AA
9925 ATTACTTATT
Statistics
Matches: 38, Mismatches: 7, Indels: 10
0.69 0.13 0.18
Matches are distributed among these distances:
14 3 0.08
15 11 0.29
16 6 0.16
17 15 0.39
18 3 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
AATTAATAATATTATTT
Found at i:9940 original size:33 final size:30
Alignment explanation
Indices: 9878--9955 Score: 72
Period size: 30 Copynumber: 2.6 Consensus size: 30
9868 AATTTTAATT
* *
9878 TTAATATTATAATTT-AATTATATTGTTTAA
1 TTAATAATAT-ATTTAAATTATATTATTTAA
9908 TTAATAATATTATTTAAATTACTTATTATTTAA
1 TTAATAATA-TATTTAAATTA--TATTATTTAA
*
9941 ATAA-AATA-ATTTAAA
1 TTAATAATATATTTAAA
9956 CAATTGTTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
30 19 0.46
31 6 0.15
32 4 0.10
33 12 0.29
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (30 bp):
TTAATAATATATTTAAATTATATTATTTAA
Found at i:10331 original size:182 final size:179
Alignment explanation
Indices: 9948--10380 Score: 460
Period size: 182 Copynumber: 2.4 Consensus size: 179
9938 TAAATAAAAT
* * * *
9948 AATTTAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTGTTTAA
1 AATTGAAACAATTGTTTTATGA-TAAA-AAAAGGTCATAATGATTTGAAATAGATAATTGTTCAA
* ** * * * *
10013 ATGGCCATAATTATTTAAACTGATTCGATAAACTGAGTTTTGTTTTAAATCTCTAACTTATCAAT
64 ATAGTAAAAAATATTTAAACTGATTCGACAAACTGAGTTTTGTTTTAAATCTCTAACTAATCAAT
* **
10078 TTTTATAATATTAATAAAGTAATATTATTTTATTTCAGATAAGCTTTTATG
129 TTTTATAATATTAATAAAGTAATATTATTTTATTTCAGATAAGCATCGATG
* *
10129 AATTGAAACAATTGTTTTATGATAAAATATAAGGTCATAACGATTTTAAATAGATAATTGTTCAA
1 AATTGAAACAATTGTTTTATGATAAAA-A-AAGGTCATAATGATTTGAAATAGATAATTGTTCAA
* * * * *
10194 ATAGTAAAAAATATTTAAACTTATTCGACAAA-TAGATTTTTTTTTTCTAATTTCTAACCTAAT-
64 ATAGTAAAAAATATTTAAACTGATTCGACAAACT-GAGTTTTGTTTT-AAATCTCTAA-CTAATC
* * * *
10257 AATTTTT-TGAATGTTAATGAATTAGTATTATTTTATTTC-GAATAAGCATCGATG
126 AATTTTTAT-AATATTAATAAAGTAATATTATTTTATTTCAG-ATAAGCATCGATG
* * * * * *
10311 AGTTGAAGCAATTATTTTATGACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTATTCTA
1 AATTGAAACAATTGTTTTATGA-TAAA-AAAAGGTCATAATGATTTGAAATAGATAATTGTTCAA
10376 ATAGT
64 ATAGT
10381 CTTAACTATT
Statistics
Matches: 210, Mismatches: 33, Indels: 17
0.81 0.13 0.07
Matches are distributed among these distances:
179 1 0.00
180 5 0.02
181 89 0.42
182 105 0.50
183 9 0.04
184 1 0.00
ACGTcount: A:0.40, C:0.08, G:0.11, T:0.41
Consensus pattern (179 bp):
AATTGAAACAATTGTTTTATGATAAAAAAAGGTCATAATGATTTGAAATAGATAATTGTTCAAAT
AGTAAAAAATATTTAAACTGATTCGACAAACTGAGTTTTGTTTTAAATCTCTAACTAATCAATTT
TTATAATATTAATAAAGTAATATTATTTTATTTCAGATAAGCATCGATG
Found at i:11184 original size:15 final size:15
Alignment explanation
Indices: 11151--11193 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 15
11141 ATAATTTAGA
11151 TATAA-ATTAATTA-
1 TATAATATTAATTAT
11164 -ATAATATTAATTAT
1 TATAATATTAATTAT
11178 TATAATATTAATTAT
1 TATAATATTAATTAT
11193 T
1 T
11194 TAAATTTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
12 4 0.15
13 8 0.30
15 15 0.56
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TATAATATTAATTAT
Found at i:11516 original size:19 final size:19
Alignment explanation
Indices: 11494--11533 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
11484 ATAACAATTA
11494 TATTAATAATAATATTAAT
1 TATTAATAATAATATTAAT
* * *
11513 TATTTATATTAATATTTAT
1 TATTAATAATAATATTAAT
11532 TA
1 TA
11534 ATTTATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAATAATAATATTAAT
Found at i:11528 original size:12 final size:12
Alignment explanation
Indices: 11491--11531 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
11481 CTTATAACAA
*
11491 TTATATTAATAA
1 TTATATTAATAT
*
11503 TAATATTAATTAT
1 TTATATTAA-TAT
11516 TTATATTAATAT
1 TTATATTAATAT
11528 TTAT
1 TTAT
11532 TAATTTATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
12 15 0.60
13 10 0.40
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
TTATATTAATAT
Found at i:11806 original size:17 final size:16
Alignment explanation
Indices: 11785--11823 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
11775 TAACGATAAT
11785 TTATAATTTAAATATTAA
1 TTATAA-TTAAA-ATTAA
11803 -TATAATTAAAATTAA
1 TTATAATTAAAATTAA
11818 TTATAA
1 TTATAA
11824 ATAGTTATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 5 0.25
16 10 0.50
17 5 0.25
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTATAATTAAAATTAA
Found at i:12089 original size:16 final size:16
Alignment explanation
Indices: 12049--12090 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
12039 TTTATATTTA
12049 ATTAATAAT-TAAATT
1 ATTAATAATATAAATT
*
12064 ATT-ATAAATATCAATT
1 ATTAAT-AATATAAATT
12080 ATTAATAATAT
1 ATTAATAATAT
12091 TTTATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 6 0.26
16 13 0.57
17 2 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTAATAATATAAATT
Found at i:13388 original size:181 final size:180
Alignment explanation
Indices: 12943--13940 Score: 926
Period size: 181 Copynumber: 5.5 Consensus size: 180
12933 TAACAAATAC
* * * ** ** * *
12943 ATTTATTTTTTAAATCTCTTACTTATTACTTTTTAGAATATTAATAGTTTAGCAATATTTTA-CT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTGA-AATATTAATAAATTAATATTATTTTATTT
* * * *
13007 CAGAATAAG-TTTGTATGGATAGAAACAATTATTTTATGACAAAAC-AAAGATCATACCGATTTG
65 C-GAATAAGCTTT-TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTG
* * * * *
13070 AGATAGATAATTATTCAAA-ATGTCATAGCTATTTGAA-TTGGTCCGATAAACAA
128 AAATAGATAATTATTCAAATA-GTCATAACTATTTGAACTT-ATTCGGTAAACAA
* * * * * *
13123 ATATAGTTTTTAAATC---T-CTTATTAATTTTCATAATATTAATAAATTAGTGTGATTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTTTGA-AATATTAATAAATTAATATTATTTTATTT
* * * * * *
13184 TGAATAA-TTTTGTATGCATAGAAACAATTGTTTTATTACAAAAC-GAAGGATCAAAACGATTTG
65 CGAATAAGCTTT-TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTG
* * * * * * * *
13247 AAATAAATAATTATTTAAATAGTTATAATTATTTAAACTCACTCGTTAAACAA
128 AAATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
* *
13300 ATTTATTTTTTAAATATTTTACTTATTAATTTCTGAAATTTTAATAAATTAATATTATTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAATTT-TGAAATATTAATAAATTAATATTATTTTATTT
*
13365 CGAATAAGCTTTTATGAATAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAACGATTTGAA
65 CGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * **
13430 ATAGATAATTATTCAAATGGTCATAATTATTTTGAACATGTTC-AAAAAGCAA
130 ATAGATAATTATTCAAATAGTCATAACTA-TTTGAACTTATTCGGTAAA-CAA
* * * * * *
13482 ATTTATTTTATATAT-TTTTACTTATTAATCTTTGGAATATTAGTAAGTTTATATTATTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAAT-TTTGAAATATTAATAAATTAATATTATTTTATTT
* * *
13546 -GAAATAAGCTTGTATGAATAGAAACAATTGTTTTATGGCAAAACAAAAGGTCATAACAATTTGA
65 CG-AATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGA
* * * * *
13610 AATAGATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATAG
129 AATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
* * * * * * *
13662 ATTTATTTTTTAAATCTCTTACTTATTAATTTTTGGAATAGTAATAAGTTAGTGTTACTTTATTT
1 ATTTATTTTTTAAATCTTTTACTTATTAA-TTTTGAAATATTAATAAATTAATATTATTTTATTT
* * * * * * ** * *
13727 TGAATAAGCCTATATGAATTGATATAATTGTTTTATGATGAAACAAAAGGTCATAACGGTTTAAA
65 CGAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAA
* * * * * * * * *
13792 ATAAACAATTATTCAGATAGTTATTACTATTTAAACTTTTTTGGTAAACAT
130 ATAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
*
13843 ATTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATT
1 ATTTATTTTTTAAATCTTTTACTTATTAATT-TTGAAATATTAATAAATTAATATTATTTTATTT
** * * *
13908 CGAATAAGCTAATATGAACAAAAATAATTGTTT
65 CGAATAAGCTTTTATGAATAGAAACAATTGTTT
13941 CAATAGTCAT
Statistics
Matches: 674, Mismatches: 123, Indels: 41
0.80 0.15 0.05
Matches are distributed among these distances:
176 74 0.11
177 63 0.09
178 2 0.00
180 43 0.06
181 455 0.68
182 37 0.05
ACGTcount: A:0.39, C:0.08, G:0.11, T:0.42
Consensus pattern (180 bp):
ATTTATTTTTTAAATCTTTTACTTATTAATTTTGAAATATTAATAAATTAATATTATTTTATTTC
GAATAAGCTTTTATGAATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAA
TAGATAATTATTCAAATAGTCATAACTATTTGAACTTATTCGGTAAACAA
Found at i:14327 original size:182 final size:182
Alignment explanation
Indices: 14097--14432 Score: 460
Period size: 182 Copynumber: 1.8 Consensus size: 182
14087 TTCGGTAAAT
* * ***
14097 AGATTCATTTTTTAAATCTCTCACTTATTAATTTTTGGAATATTAATAAATTAGAATTA-TGTTA
1 AGATACATTTTCTAAATCTCTCACTTATTAATTTTCAAAATATTAATAAATTAGAATTACT-TTA
* * *
14161 TTTTGAATAAGATTGTATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGCTCATAACAATTT
65 TTCTGAATAAGATTATATGAACAAAAACAATTGTTTTATGAGAAAACAAAAGCTCATAACAATTT
* *
14226 GAAATAGATAATTGTTCAAATAGTTTTTTTATTTTTGCACTAGTCAAGCCAAA
130 GAAATAAATAATTGGTCAAATAGTTTTTTTATTTTTGCACTAGTCAAGCCAAA
* *
14279 AGATACATTTTCTAAATC-CATTACTTATTAATTTTCAAAATATTAATAAATTAGCATTACTTTA
1 AGATACATTTTCTAAATCTC-TCACTTATTAATTTTCAAAATATTAATAAATTAGAATTACTTTA
* * ** * * *
14343 TTCTGAATAAGATTATATGAATAGAAGTAATTGTTTTATGATAAAACAAATGGTCATAACAATTT
65 TTCTGAATAAGATTATATGAACAAAAACAATTGTTTTATGAGAAAACAAAAGCTCATAACAATTT
*
14408 GAAATAAATATTTGGTCAAATAGTT
130 GAAATAAATAATTGGTCAAATAGTT
14433 ATAACTAATT
Statistics
Matches: 132, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
181 1 0.01
182 130 0.98
183 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (182 bp):
AGATACATTTTCTAAATCTCTCACTTATTAATTTTCAAAATATTAATAAATTAGAATTACTTTAT
TCTGAATAAGATTATATGAACAAAAACAATTGTTTTATGAGAAAACAAAAGCTCATAACAATTTG
AAATAAATAATTGGTCAAATAGTTTTTTTATTTTTGCACTAGTCAAGCCAAA
Found at i:14602 original size:16 final size:17
Alignment explanation
Indices: 14581--14613 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14571 TAACAATTTG
14581 AAATAG-ATAATTATTC
1 AAATAGCATAATTATTC
14597 AAATAGTCATAATTATT
1 AAATAG-CATAATTATT
14614 TGAAATAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTATTC
Found at i:14621 original size:19 final size:18
Alignment explanation
Indices: 14576--14622 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
14566 AGTAATAACA
14576 ATTTGAAATAG-ATAATT
1 ATTTGAAATAGTATAATT
*
14593 A-TTCAAATAGTCATAATT
1 ATTTGAAATAGT-ATAATT
14611 ATTTGAAATAGT
1 ATTTGAAATAGT
14623 TTTGTAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 8 0.32
17 1 0.04
18 7 0.28
19 9 0.36
ACGTcount: A:0.45, C:0.04, G:0.11, T:0.40
Consensus pattern (18 bp):
ATTTGAAATAGTATAATT
Found at i:15501 original size:181 final size:181
Alignment explanation
Indices: 14853--17322 Score: 1829
Period size: 181 Copynumber: 13.8 Consensus size: 181
14843 AAAAATAGCT
* * * * * *
14853 CTAATTTATTAATATACCAAAAATTAATGAGTAAGAGAATTAAAAAAAATTGAATATGTTTA-CG
1 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAG-ATT-TAAAAAA-TAAATCTGTTTATCG
* * * * * *
14917 AAACAAGTTCAAATAGTTATAACTATCTAAATAATTATCTATTTCAAAACATTATGACCATTTGT
63 -AACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGT
* * * *
14982 TTTGTCATAAAATAATTGGTTCTATTCATGCAAG-TTATTTCG-AACAAAATAATA
127 TTTGTCATAAAACAATTGTTTCTATTCATACAAGTTTA-TTCGAAATAAAATAATA
* * * * * * * * * * *
15036 -TAAATGTATTAAAACTCCAAAAATTAATAAATAA-AAATTTAAAAAATAATTATGTTTTTTGGA
1 CT-AATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
** **
15099 CACA-TTC-AATAGTTATGACTATTTGAACAATTATCTATTTCAAATTGTTATGACAATTTGTTT
65 CA-AGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * * * *
15162 TGTCATAAACCAATTATTTCTGTTCATACAAGCTTATTCAAAATAAAATAATA
129 TGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* * * * *
15215 TTAA-TTATTAATATTTCT-AAAATTAATAAGTAAAAGATTTAAATAATAAATTTGTTTATCGAG
1 CTAATTTATTAATA-TTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
* * * *
15278 CAAGTTCAAATAGTTATTACTATTTGAACAATTATATATTTCAAATCTTTATGATCTTTTGTTTT
65 CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* *
15343 GTCATAAAACAATTGTTTCTATTCACACAAGTTTATTCGGAATAAAATAATA
130 GTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* * *
15395 CTAATTTATTATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATTTGTTTATCGAAC
1 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC
* * * * *** * * * *
15460 AAGTTTAAATAGTCATGTCCATTTGAATTGTTATTTATTTCAAATCATTATGACATTTAGTTTTA
66 AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTG
* * * * ** *
15525 TTAT-AAATAATTATTTTTATTCATACAAAATTATTCAAAATAAAATAATA
131 TCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* * * *
15575 CCAACTTATTAGTATT-TCAAAAA-T--TAA-TAAG-GATTT-AAAAATAAATGTGTTT-TCGAA
1 CTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
* * * * * *
15632 GCAA-TTCAAATAGTTAAGACTATTAGAACAATTATCTATTCCAAATTATTCTGATCTTTTGTTT
65 -CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * * * * * * * *
15696 AGTCAAAAAATAATTATTTC-AGGTCATACACACTTTATTTGAAATATAGTAATA
129 TGTCATAAAACAATTGTTTCTA-TTCATACA-AGTTTATTCGAAATAAAATAATA
* * * * * *
15750 CTAATTTATTAAAATT-TAGAATATTAATACG--A-A-ATTT-TAAAA-AAATCTATTTACCGAA
1 CTAATTTATTAATATTCTA-AAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
* * * * * *
15808 TAAGTTCAAATAGTTAAGACTA-TTGAAGAATTATCTATTTAAAATCATTATGAGCTTTTATTTT
65 CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * * * *
15872 ATCATAAAACAATCGTTT-TAATACATAAAAGTTT-TTCCAAAATAAAATAATA
130 GTCATAAAACAATTGTTTCT-ATTCATACAAGTTTATT-CGAAATAAAATAATA
* *** * ** * * *
15924 TTGCCTTATTAATATT-TCAAAAATTAAGAAGTTGGAGTTTTAAAAAATAAATCAGTTTATCAAA
1 CTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
** * * * ** *
15988 TTA-TTCAAATAATTATGGCCATTTGAGTAATTATCTATTTCAAATCATTATGAACTTTTGTTTT
65 CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* ** *
16052 GTCATAAAACAATTGTTTTTCA-TCATACAAGCCTATTTGGAAA-AAAATAATA
130 GTCATAAAACAATTGTTTCT-ATTCATACAAGTTTA-TTCGAAATAAAATAATA
* * *
16104 CTAATTTACTAATATT-TCAAAAA-T--TAA-TAA-AGATTTAAAAAGTTAATCTGTTTA-CTGA
1 CTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATC-GA
* * * ** * * *
16162 ACCAGTTCAAATAGTTATGTCTATTTGAACAATTATATATTTCAAATTGTTATAACCTTTTATTA
64 ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * * * *
16227 TCTCATAAAAAAATTATTTCTATTCACACAAGTTTATTCAAAATAAAATAATA
129 TGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* * * * * *
16280 CTAATATAATAATATTCTGAAAATTAATAACTAAGAGATTTAAAAAATAAATTTGTTTA-CTGAG
1 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATC-GAA
* * * * * * * * **
16344 CTAGTTCAAATATTTAAGGCTATATGGACAATTCTTTATTTCAAATTGTTATGACCTTTTGTTTT
65 CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * * * * * * * *
16409 ATCGTAAAACAATT-TTTTTCATTTCTTAGTAA-CTTATTCGGAATAAAGTAAAA
130 GTCATAAAACAATTGTTTCT-A-TTCATA-CAAGTTTATTCGAAATAAAATAATA
* * * * * * ** *
16462 CAAATTTATTAATATT-TCAAAACTTAATAAGCAAGAGATTTAAAAAACAATTCAGTTTGCCTAA
1 CTAATTTATTAATATTCT-AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
* * * ** **
16526 CCAGTTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATCATTATGTTCTTTCATTTT
65 CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTT
* * * * * * *
16591 GTCATAAAACAAATGTTTTTGTACATATAAGTTTATTCGGAATAAAACAATA
130 GTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* * * * * * * *
16643 TTAATTTATTAATATTTTAAAAATTAAGAAGCAAGAAATTTAAAAAGTAAAACTGTTTA-CTAAA
1 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATC-GAA
* * * * * *
16707 CCAA-TTCAATTAGTTATAACTATTTGAACAATTATTTATTTCAAATCACTATGACCATTTGTAT
65 -CAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * * * * * * *
16771 TGTCATAAAATAATTATTTTTGTTCATACAA-TCTATTTGGAATAAAGTAATA
129 TGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* ** * * ** *
16823 CTAATTTATCAATATT-TTGAAATTAATAAGTAATAGATTTAAAAAATGAATC-AATTAGCCTG-
1 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTA-TC-GA
* * * *
16885 ACCAGTTCAAATAGTTAT-ACTGTTTGAATAATTATCTATTTCAAATCATTATGACATTTTGTTT
64 ACAAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTT
* * ** * * * * * *
16949 TATCACAAAACAATTGTTTCTATTTGTACTAGCTTATTTGAAATAATATTATT
129 TGTCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
* * * *
17002 TTATTTTATTAATATTCTAAAAA-T--TAA-TAAGAGATTTAAAAAATAAAACTATTTATCGAAC
1 CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC
* * * ** *
17063 AAGTACAAATAATTATGACTATTTGAATAATTATCTATTT-ATAATCGCTATAACCTTTTGTTTT
66 AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCA-AATCATTATGACCTTTTGTTTT
* * *
17127 GTCCTAAAACAAAAT-TTTCTATTCATACAAGTTTATTTC-AAATAAAATTATA
130 GTCATAAAAC-AATTGTTTCTATTCATACAAGTTTA-TTCGAAATAAAATAATA
* * * ** *
17179 CAAATTTATTAATATTC-AAACAAGTAATAAGTAAAAGATTTAAAAAATAAATCTACTTATCAAA
1 CTAATTTATTAATATTCTAAA-AATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAA
* * * * * ** * *
17243 TAAGTTTAAATAATTATGACTATTTAAACAATTATTTTATTTCAAATTGTTATAACTTTTTGTTT
65 CAAGTTCAAATAGTTATGACTATTTGAACAATTA-TCTATTTCAAATCATTATGACCTTTTGTTT
* * *
17308 TCTCATGACACAATT
129 TGTCATAAAACAATT
17323 TAATATTTAT
Statistics
Matches: 1797, Mismatches: 413, Indels: 156
0.76 0.17 0.07
Matches are distributed among these distances:
173 54 0.03
174 75 0.04
175 130 0.07
176 177 0.10
177 106 0.06
178 176 0.10
179 151 0.08
180 320 0.18
181 408 0.23
182 165 0.09
183 35 0.02
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
CTAATTTATTAATATTCTAAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTGTTTATCGAAC
AAGTTCAAATAGTTATGACTATTTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTG
TCATAAAACAATTGTTTCTATTCATACAAGTTTATTCGAAATAAAATAATA
Found at i:15544 original size:19 final size:20
Alignment explanation
Indices: 15520--15559 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
15510 TGACATTTAG
15520 TTTTATT-ATA-AATAATTAT
1 TTTTATTCATACAA-AATTAT
15539 TTTTATTCATACAAAATTAT
1 TTTTATTCATACAAAATTAT
15559 T
1 T
15560 CAAAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 10 0.53
21 2 0.11
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTATTCATACAAAATTAT
Found at i:16566 original size:16 final size:17
Alignment explanation
Indices: 16534--16566 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16524 AACCAGTTCA
16534 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
16552 AATAATTAT-CTATTT
1 AATAATTATACTATTT
16567 CAAATCATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:17102 original size:16 final size:17
Alignment explanation
Indices: 17070--17102 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
17060 AACAAGTACA
17070 AATAATTATGACTATTTG
1 AATAATTAT-ACTATTTG
17088 AATAATTAT-CTATTT
1 AATAATTATACTATTT
17103 ATAATCGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (17 bp):
AATAATTATACTATTTG
Found at i:17853 original size:18 final size:18
Alignment explanation
Indices: 17830--17873 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
17820 ATTTATTCAT
*
17830 AATTAATAAATAATTAT-A
1 AATTAATAAA-AATCATAA
*
17848 AATTAATATAAATCATAA
1 AATTAATAAAAATCATAA
17866 AATTAATA
1 AATTAATA
17874 TTTAAATCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTAATAAAAATCATAA
Found at i:18262 original size:26 final size:26
Alignment explanation
Indices: 18233--18299 Score: 82
Period size: 26 Copynumber: 2.5 Consensus size: 26
18223 AATACTTATA
18233 ATTTATTATTAATTATTTGAA-TATTG
1 ATTT-TTATTAATTATTTGAATTATTG
* * *
18259 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATTTGAATTATTG
18286 ATTTTTATTAATTA
1 ATTTTTATTAATTA
18300 ATAGATATCT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 2 0.06
26 21 0.62
27 11 0.32
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (26 bp):
ATTTTTATTAATTATTTGAATTATTG
Found at i:20544 original size:181 final size:181
Alignment explanation
Indices: 20212--20713 Score: 456
Period size: 181 Copynumber: 2.8 Consensus size: 181
20202 TTTGTTTAGT
* * ** * * * * * * *
20212 CATAAAATAATTGTTTCAGTTCATACATGCTTATTCAAAATAAAATAAT-CTAATATATTAACA-
1 CATAAAACAATTGTTTTACATCATAAAAGCTTATCCCAAATAAAATAATATTAATTTATTAATAT
* * *** ** *
20275 TTCAAAAAATTAATAAGCAAGAA-ATTTAAAAAAATAAATTTGTTTATTGAA-CAAGTTCAAATA
66 TTC-AAAAATTAATAAG-TAGAAGA-TTGAAAAAATAAATCAATTTATCAAATCAA-TTAAAATA
* * * * * *
20338 GTTATGACTATTTGAATAATTATCTATTTAAAATCATTATGACCTTTTATTTTAT
127 ATTATGACCATTTGAACAATTATCTATTTAAAATCATTATAAACTTTTATTTTAA
* * *
20393 CATAAAACAATTGTTTTAGATCATAAAAGCTTGTCCCAAATAAAATAATATTACTTTATTAATAT
1 CATAAAACAATTGTTTTACATCATAAAAGCTTATCCCAAATAAAATAATATTAATTTATTAATAT
* * * *
20458 TTTAAAAATTGATAAGTTGAAGATTGAAAACATAAATCAATTTATCAAATCAATTAAAATAATTA
66 TTCAAAAATTAATAAGTAGAAGATTGAAAAAATAAATCAATTTATCAAATCAATTAAAATAATTA
* * * *
20523 TGGCCATTTGAACATTTATCTATTTCAAATCATTATAAACTTTTGTTTTAA
131 TGACCATTTGAACAATTATCTATTTAAAATCATTATAAACTTTTATTTTAA
* * *** * **
20574 CATAAAATAATTGTTTTTCATCATGGTAGCTTATTCGTAATAAAATAATATTAATTTATTAATAT
1 CATAAAACAATTGTTTTACATCATAAAAGCTTATCCCAAATAAAATAATATTAATTTATTAATAT
* * * * * * *
20639 TTCAAAAATTAATAAGTAGGAGATTTAAAAAATAAAT-ATGTTTATCGAACCAATTCAAATAGTT
66 TTCAAAAATTAATAAGTAGAAGATTGAAAAAATAAATCA-ATTTATCAAATCAATTAAAATAATT
*
20703 ATGACTATTTG
130 ATGACCATTTG
20714 TATTTCAATT
Statistics
Matches: 258, Mismatches: 58, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
180 1 0.00
181 229 0.89
182 26 0.10
183 2 0.01
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (181 bp):
CATAAAACAATTGTTTTACATCATAAAAGCTTATCCCAAATAAAATAATATTAATTTATTAATAT
TTCAAAAATTAATAAGTAGAAGATTGAAAAAATAAATCAATTTATCAAATCAATTAAAATAATTA
TGACCATTTGAACAATTATCTATTTAAAATCATTATAAACTTTTATTTTAA
Found at i:21139 original size:13 final size:13
Alignment explanation
Indices: 21121--21145 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21111 TAATTTATTT
21121 AATAATTAGATTA
1 AATAATTAGATTA
21134 AATAATTAGATT
1 AATAATTAGATT
21146 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:21275 original size:13 final size:15
Alignment explanation
Indices: 21257--21288 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
21247 AGTTTTCATC
21257 TTTAAAA-TT-AATA
1 TTTAAAATTTAAATA
21270 TTTAAAATTTAAATA
1 TTTAAAATTTAAATA
21285 TTTA
1 TTTA
21289 TATTATATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTTAAAATTTAAATA
Found at i:21341 original size:16 final size:18
Alignment explanation
Indices: 21302--21342 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
21292 TATATTTCAA
21302 TTAATTACATATTATAAT
1 TTAATTACATATTATAAT
* *
21320 TAAATTA-A-ATTATTAT
1 TTAATTACATATTATAAT
21336 TTAATTA
1 TTAATTA
21343 TAAAAATTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
16 13 0.65
17 1 0.05
18 6 0.30
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTAATTACATATTATAAT
Found at i:21351 original size:17 final size:18
Alignment explanation
Indices: 21331--21364 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21321 AAATTAAATT
21331 ATTA-TTTAATTATAAAA
1 ATTATTTTAATTATAAAA
*
21348 ATTATTTTAATTTTAAA
1 ATTATTTTAATTATAAA
21365 TTAATAAGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
ATTATTTTAATTATAAAA
Found at i:21642 original size:19 final size:18
Alignment explanation
Indices: 21614--21651 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
21604 TTATAATAAG
21614 TTATAGTATA-ACTTATTA
1 TTATAGTATATA-TTATTA
21632 TTATAAGTATATATTATTA
1 TTAT-AGTATATATTATTA
21651 T
1 T
21652 AATTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 13 0.72
20 1 0.06
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATAGTATATATTATTA
Found at i:21825 original size:30 final size:31
Alignment explanation
Indices: 21763--21831 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
21753 CTTTAATTAA
**
21763 TATTATATAATAGAATTTAATATAAATAATT
1 TATTATATAATAGAACATAATATAAATAATT
*
21794 TATTA-ATAATAGAAACATAATTTAAAT-ATT
1 TATTATATAATAG-AACATAATATAAATAATT
21824 TATTATAT
1 TATTATAT
21832 TTATCATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 15 0.45
31 18 0.55
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (31 bp):
TATTATATAATAGAACATAATATAAATAATT
Found at i:22017 original size:16 final size:15
Alignment explanation
Indices: 21987--22026 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 15
21977 TAATATGATC
21987 TAATATTATATAA-T
1 TAATATTATATAATT
22001 TATATATTATAATAATT
1 TA-ATATTAT-ATAATT
22018 TAATATTAT
1 TAATATTAT
22027 TAAATTTATC
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.09
15 7 0.30
16 11 0.48
17 3 0.13
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TAATATTATATAATT
Found at i:22149 original size:15 final size:15
Alignment explanation
Indices: 22131--22160 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22121 ATTATACGAT
*
22131 TATAATTTATAATTA
1 TATAAATTATAATTA
22146 TATAAATTATAATTA
1 TATAAATTATAATTA
22161 CTAACCAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAAATTATAATTA
Found at i:22499 original size:21 final size:22
Alignment explanation
Indices: 22457--22507 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
22447 TTGTTATTTT
22457 TTAATTATAAATACTGATATTA
1 TTAATTATAAATACTGATATTA
22479 TTAATT-TAATATACT-ATATTA
1 TTAATTATAA-ATACTGATATTA
*
22500 AT-ATTATA
1 TTAATTATA
22508 TCATAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 3 0.12
21 12 0.46
22 11 0.42
ACGTcount: A:0.45, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
TTAATTATAAATACTGATATTA
Found at i:23247 original size:181 final size:181
Alignment explanation
Indices: 22914--23595 Score: 681
Period size: 181 Copynumber: 3.8 Consensus size: 181
22904 ACAAAAAAAG
** * * *
22914 GTCAT-ACTATTTGAACTTA-TTCAGTAAATAGATTTATTTTTTAAATCTCCTT-CCTACTAA-C
1 GTCATAACTATTTGAA-TTAGTTCAGTAAATAGATTTATTTTTTAAAT-TTTTTACTTATTAATT
* * * * *
22975 TTTCAAAGTATTAATCAACTAGTATTATTTTATTCCAAATAAGCTTGTATGAATAGGAACAATTG
64 TTTGAAA-TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTG
* * * *
23040 TTTTAGGACAAAACAAAAAATCATAACTATTTGAAATAAAAAATTGTTCAAACA
128 TTTTAAGACAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACA
* * *
23094 GTCATAACGATTTGAATTAGCTCAGTAAATAGATTTATTTTTAAAATTTTTTACTTATTAATTTT
1 GTCATAACTATTTGAATTAGTTCAGTAAATAGATTTATTTTTTAAATTTTTTACTTATTAATTTT
* *
23159 TGAAATATTAATAAATTAGTATTATTTTATTTCAAATATGCTTGTATGAATAGAAAAAATTGGTT
66 TGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATT-GTT
* * ** * *
23224 TT-TGACAAATCAAAGGGTCATAACTATTTGAAATAGATAATTGTTTAAAGA
130 TTAAGACAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACA
* * * * * * *
23275 GTGATAACTATTTGAA-CATGTTCAGAAAACATATATATATTTTGTAAA-TTTTTACTCATTAAT
1 GTCATAACTATTTGAATTA-GTTCAG-TAA-ATAGATTTATTTTTTAAATTTTTTACTTATTAAT
*
23338 TTTTGAAATATTAATAAATTTA-TATTATTTTA-TTCAAAATAAGCTTGTTTGAATAGAAACAAT
63 TTTTGAAATATTAATAAA-TTAGTATTATTTTATTTC-AAATAAGCTTGTATGAATAGAAACAAT
* * * **
23401 TGTTTTAAGACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATG
126 TGTTTTAAGACAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACA
* * * ** * ***
23457 GACATGACTATTT-AATTTTGTTTGGTAAATA-ATTT-TTTTTTAAATATGCAACTTATTAATTT
1 GTCATAACTATTTGAA-TTAGTTCAGTAAATAGATTTATTTTTTAAATTTTTTACTTATTAATTT
** ** *
23519 TT-AGAATATTAATTGATTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAAC-ATATG
65 TTGA-AATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAAT-TG
*
23582 TTTTATGACAAAAC
128 TTTTAAGACAAAAC
23596 CTAACTATTT
Statistics
Matches: 416, Mismatches: 68, Indels: 37
0.80 0.13 0.07
Matches are distributed among these distances:
178 14 0.03
179 73 0.18
180 17 0.04
181 161 0.39
182 134 0.32
183 17 0.04
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
GTCATAACTATTTGAATTAGTTCAGTAAATAGATTTATTTTTTAAATTTTTTACTTATTAATTTT
TGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTGTTT
TAAGACAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACA
Found at i:23371 original size:182 final size:181
Alignment explanation
Indices: 22983--23595 Score: 591
Period size: 182 Copynumber: 3.4 Consensus size: 181
22973 ACTTTCAAAG
* * * * *
22983 TATTAATCAACTAGTATTATTTTATTCCAAATAAGCTTGTATGAATAGGAACAATTGTTTTAGGA
1 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTGTTTTAAGA
* * * *
23048 CAAAACAAAAAATCATAACTATTTGAAATAAAAAATTGTTCAAACAGTCATAACGATTTGAATTA
66 CAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACAGTCATAACGATTTGAAATA
* * *
23113 GCTCAGTAAATAGATTTATTTTTAAAATTTTTTACTTATTAATTTTTGAAA
131 GCTCAGAAAATAGATATATTTTTAAAATTTTTTACTCATTAATTTTTGAAA
* * *
23164 TATTAATAAATTAGTATTATTTTATTTCAAATATGCTTGTATGAATAGAAAAAATTGGTTTT-TG
1 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATT-GTTTTAAG
* ** * * * *
23228 ACAAATCAAAGGGTCATAACTATTTGAAATAGATAATTGTTTAAAGAGTGATAACTATTTGAACA
65 ACAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACAGTCATAACGATTTGAA-A
* *
23293 T-GTTCAGAAAACATATATATATTTTGT-AAA-TTTTTACTCATTAATTTTTGAAA
129 TAGCTCAG-AAA-ATAGATATATTTT-TAAAATTTTTTACTCATTAATTTTTGAAA
*
23346 TATTAATAAATTTA-TATTATTTTA-TTCAAAATAAGCTTGTTTGAATAGAAACAATTGTTTTAA
1 TATTAATAAA-TTAGTATTATTTTATTTC-AAATAAGCTTGTATGAATAGAAACAATTGTTTTAA
* * * ** * * *
23409 GACAAAACAAAATGTCATAACAATTTGAAATAGATAATAGTTCAAATGGACATGACTATTT-AAT
64 GACAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACAGTCATAACGATTTGAA-
* * * ** * * * * *** *
23473 TTTGTTTGGTAAATA-AT-TTTTTTTTAAATATGCAACTTATTAATTTTT-AGAA
128 ATAGCTCAGAAAATAGATATATTTTTAAAATTTTTTACTCATTAATTTTTGA-AA
** ** * *
23525 TATTAATTGATTAGTATTATTTTATTTTGAATAAACTTGTATGAATAGAAAC-ATATGTTTTATG
1 TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAAT-TGTTTTAAG
23589 ACAAAAC
65 ACAAAAC
23596 CTAACTATTT
Statistics
Matches: 361, Mismatches: 56, Indels: 32
0.80 0.12 0.07
Matches are distributed among these distances:
177 1 0.00
178 14 0.04
179 72 0.20
180 5 0.01
181 122 0.34
182 129 0.36
183 17 0.05
184 1 0.00
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.41
Consensus pattern (181 bp):
TATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAATAGAAACAATTGTTTTAAGA
CAAAACAAAAAGTCATAACTATTTGAAATAGATAATTGTTCAAACAGTCATAACGATTTGAAATA
GCTCAGAAAATAGATATATTTTTAAAATTTTTTACTCATTAATTTTTGAAA
Found at i:24021 original size:21 final size:22
Alignment explanation
Indices: 23992--24045 Score: 78
Period size: 21 Copynumber: 2.5 Consensus size: 22
23982 TTAATAATAG
23992 TATTAATTATTAATATAATTAA
1 TATTAATTATTAATATAATTAA
24014 TATT-ATTATTAATATAATT--
1 TATTAATTATTAATATAATTAA
24033 TATCTAATTATTA
1 TAT-TAATTATTA
24046 TAATAATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.10
20 1 0.03
21 22 0.73
22 4 0.13
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
TATTAATTATTAATATAATTAA
Found at i:24377 original size:10 final size:9
Alignment explanation
Indices: 24360--24433 Score: 60
Period size: 11 Copynumber: 7.4 Consensus size: 9
24350 TTTCTAATAT
24360 TAATATTTA
1 TAATATTTA
24369 TAATAATTTA
1 TAAT-ATTTA
24379 TAAATTATTTA
1 T-AA-TATTTA
24390 TAACTATTTA
1 TAA-TATTTA
24400 TAAGTTATTTA
1 TAA--TATTTA
*
24411 AAATA-TTA
1 TAATATTTA
24419 TAATAGTATTA
1 TAATA-T-TTA
24430 TAAT
1 TAAT
24434 TAATAAATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
8 7 0.13
9 6 0.11
10 17 0.31
11 23 0.43
12 1 0.02
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.50
Consensus pattern (9 bp):
TAATATTTA
Found at i:24388 original size:21 final size:21
Alignment explanation
Indices: 24363--24415 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
24353 CTAATATTAA
24363 TATTTATAATAATTTATAAAT
1 TATTTATAATAATTTATAAAT
*
24384 TATTTATAACT-ATTTATAAGT
1 TATTTATAA-TAATTTATAAAT
*
24405 TATTTAAAATA
1 TATTTATAATA
24416 TTATAATAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 1 0.04
21 26 0.93
22 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TATTTATAATAATTTATAAAT
Found at i:24390 original size:11 final size:11
Alignment explanation
Indices: 24363--24414 Score: 56
Period size: 10 Copynumber: 5.0 Consensus size: 11
24353 CTAATATTAA
24363 TATTTAT-AAT
1 TATTTATAAAT
*
24373 AATTTATAAAT
1 TATTTATAAAT
*
24384 TATTTAT-AAC
1 TATTTATAAAT
*
24394 TATTTATAAGT
1 TATTTATAAAT
24405 TATTTA-AAAT
1 TATTTATAAAT
24415 ATTATAATAG
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
10 18 0.53
11 16 0.47
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (11 bp):
TATTTATAAAT
Found at i:24501 original size:31 final size:28
Alignment explanation
Indices: 24463--24540 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 28
24453 TAATAGTTAT
24463 ATAATTATAACTAATTATTTATACTATTAGA
1 ATAATTATAACTAA-TATTTATA-T-TTAGA
*
24494 ATAATTATTAAACCAA-ATTTATATTTAGA
1 ATAATTA-T-AACTAATATTTATATTTAGA
*
24523 ATAATTATAATTAATATT
1 ATAATTATAACTAATATT
24541 ATTATCTATT
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
27 4 0.10
28 4 0.10
29 12 0.29
30 1 0.02
31 14 0.34
32 1 0.02
33 5 0.12
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (28 bp):
ATAATTATAACTAATATTTATATTTAGA
Found at i:24725 original size:23 final size:25
Alignment explanation
Indices: 24666--24731 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
24656 GTCTTATTAT
24666 TTATC-AATAAAT-TTAATTTTTAAA
1 TTATCAAATAAATATT-ATTTTTAAA
24690 TTATCAAATAAATATTATTTTT-AA
1 TTATCAAATAAATATTATTTTTAAA
*
24714 TT-TGAAATAAATA-TATTT
1 TTATCAAATAAATATTATTT
24732 AATATTTAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
22 5 0.13
23 10 0.26
24 9 0.23
25 13 0.33
26 2 0.05
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (25 bp):
TTATCAAATAAATATTATTTTTAAA
Found at i:24738 original size:22 final size:22
Alignment explanation
Indices: 24695--24746 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
24685 TTAAATTATC
*
24695 AAATAAATATTATTTTTAATTT
1 AAATAAATATTATTTATAATTT
24717 GAAATAAATA-TATTTA-ATATTT
1 -AAATAAATATTATTTATA-ATTT
*
24739 AAAGAAAT
1 AAATAAAT
24747 TACTATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 8 0.31
22 9 0.35
23 9 0.35
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (22 bp):
AAATAAATATTATTTATAATTT
Found at i:24982 original size:10 final size:10
Alignment explanation
Indices: 24953--24999 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
24943 AATCAAACAA
*
24953 TATATAAGTAT
1 TATATAAAT-T
24964 TAT-TAAATT
1 TATATAAATT
24973 TATATAAATT
1 TATATAAATT
* *
24983 TAAATCAATT
1 TATATAAATT
24993 TATATAA
1 TATATAA
25000 TTCTTTTTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
9 4 0.13
10 23 0.77
11 3 0.10
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (10 bp):
TATATAAATT
Found at i:25101 original size:20 final size:21
Alignment explanation
Indices: 25066--25126 Score: 72
Period size: 20 Copynumber: 2.9 Consensus size: 21
25056 CTTATAGCTA
25066 ATAATAA-ATTTAATTAATAA-
1 ATAATAATATTT-ATTAATAAT
*
25086 ATTATAATATTTATTAATAAT
1 ATAATAATATTTATTAATAAT
25107 ATAATAATATCATTATTAAT
1 ATAATAATAT--TTATTAAT
25127 GATAAAATGA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
20 14 0.40
21 13 0.37
23 8 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
ATAATAATATTTATTAATAAT
Found at i:25131 original size:21 final size:21
Alignment explanation
Indices: 25078--25143 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 21
25068 AATAAATTTA
* *
25078 ATTAATAA-ATTATAATATTT
1 ATTAATAATATAATAATATTC
25098 ATTAATAATATAATAATA-TC
1 ATTAATAATATAATAATATTC
*
25118 ATTATTAATGATAA-AATGATT-
1 ATTAATAAT-ATAATAAT-ATTC
25139 ATTAA
1 ATTAA
25144 ATTTTGAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 20 0.53
21 17 0.45
22 1 0.03
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (21 bp):
ATTAATAATATAATAATATTC
Found at i:25838 original size:181 final size:177
Alignment explanation
Indices: 25442--25865 Score: 415
Period size: 181 Copynumber: 2.4 Consensus size: 177
25432 TCACTATAAC
* * * * * **
25442 CTTTTGCTTTGTCATAAAATGATTTTTTCTA-TTCATACAAGCTTGTTTTGAATAAAATAATACA
1 CTTTTGTTTTGTCATAAAATAATTGTTTC-AGTTCATACTAGCTT-ATTTGAATAAAATAATATT
** * ** **
25506 AATTTATTAAATTAAGACAATTAATAAGTAAAAGAATTTTTAAAAAATCTATTTACTGAACAAGT
64 AATTTATTAAATTAAGACAATTAATAAGTAAAAGAATTTAAAAAAAATATATTTACCAAACAAAC
** * * * *
25571 TCAAATCGTTATAACTATTTGAACAATTACTTATTTCAAATTGTTAAGA
129 TCAAATAATCATAACTATTTGAACAATAACTTATTTCAAATTATCAAGA
* * **
25620 CTTTTTCTTTTGTCATAAAACAATTGTTTTTGTTCATACTAGCTTATTTGGAATAAAATAATATT
1 C-TTTTGTTTTGTCATAAAATAATTGTTTCAGTTCATACTAGCTTATTT-GAATAAAATAATATT
* * * *
25685 AATTTATTAATATTTAGACAATTTATAAGTAAAAG-ATTTAAAAAATAAATATGTTTGCCAAACA
64 AATTTATTAA-ATTAAGACAATTAATAAGTAAAAGAATTT-AAAAA-AAATATATTTACCAAACA
* * *
25749 AACTCAAATAATCATGACTATTTGAATAATAA-TCTATTTCAAATTATCATGA
126 AACTCAAATAATCATAACTATTTGAACAATAACT-TATTTCAAATTATCAAGA
* * *
25801 GCTTTTGTTTTGTAATAAAATAATTGCTTCAGTTCATA-TAAGCCTATTTGAGATAAAATAATAT
1 -CTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCATACT-AGCTTATTTGA-ATAAAATAATAT
25865 T
63 T
25866 CCAAAAATTA
Statistics
Matches: 198, Mismatches: 38, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
178 4 0.02
179 61 0.31
180 29 0.15
181 103 0.52
182 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (177 bp):
CTTTTGTTTTGTCATAAAATAATTGTTTCAGTTCATACTAGCTTATTTGAATAAAATAATATTAA
TTTATTAAATTAAGACAATTAATAAGTAAAAGAATTTAAAAAAAATATATTTACCAAACAAACTC
AAATAATCATAACTATTTGAACAATAACTTATTTCAAATTATCAAGA
Found at i:26390 original size:17 final size:16
Alignment explanation
Indices: 26370--26420 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
26360 AATAACATAT
26370 ATATTATATAGTATTAA
1 ATATTATATA-TATTAA
*
26387 ATATTATA-AT-TTTA
1 ATATTATATATATTAA
26401 ATATTATATTATATTAA
1 ATATTATA-TATATTAA
26418 ATA
1 ATA
26421 ACTACAGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
14 11 0.38
15 1 0.03
16 3 0.10
17 14 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
ATATTATATATATTAA
Found at i:27109 original size:17 final size:18
Alignment explanation
Indices: 27069--27109 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
27059 AATATATGAT
*
27069 TATAATTTTATTATAATA
1 TATAATTTTATCATAATA
27087 -ATTAATTTT-TCATAATA
1 TA-TAATTTTATCATAATA
27104 TATAAT
1 TATAAT
27110 CTTAATAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (18 bp):
TATAATTTTATCATAATA
Found at i:27237 original size:19 final size:20
Alignment explanation
Indices: 27207--27246 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
27197 TATAATTGAC
27207 TATTTAAAAATAATAA-ATAT
1 TATTTAAAAAT-ATAATATAT
27227 TATTT-AAAATATAATATAT
1 TATTTAAAAATATAATATAT
27246 T
1 T
27247 TCACATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.21
19 10 0.53
20 5 0.26
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TATTTAAAAATATAATATAT
Found at i:27240 original size:21 final size:21
Alignment explanation
Indices: 27171--27242 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
27161 TAGCTTAATA
*
27171 ATAATTAATATTAATTATAAATAT
1 ATAATAAATATT-ATT-TAAA-AT
* * *
27195 ATTATAATTGACTATTTAAAA-
1 ATAATAAAT-ATTATTTAAAAT
27216 ATAATAAATATTATTTAAAAT
1 ATAATAAATATTATTTAAAAT
27237 ATAATA
1 ATAATA
27243 TATTTCACAT
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
20 10 0.26
21 13 0.33
22 1 0.03
23 4 0.10
24 9 0.23
25 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (21 bp):
ATAATAAATATTATTTAAAAT
Found at i:27264 original size:45 final size:46
Alignment explanation
Indices: 27167--27291 Score: 114
Period size: 45 Copynumber: 2.7 Consensus size: 46
27157 ATAATAGCTT
* * * *
27167 AATAATAATTAATATTAATTATAAATATATTATAATTGACTATTTA
1 AATAATAATAAATATTAATTATAAATATAATATAATTCACTATATA
* *
27213 AA-AATAATAAATATTATTTA-AAATATAATATATTTCAC-ATATA
1 AATAATAATAAATATTAATTATAAATATAATATAATTCACTATATA
27256 AATTAATAATTATAAT-TTATATCTATCAAATATAAT
1 AA-TAATAA-TA-AATATTA-AT-TAT-AAATATAAT
27292 CATTATATAT
Statistics
Matches: 64, Mismatches: 7, Indels: 12
0.77 0.08 0.14
Matches are distributed among these distances:
43 6 0.09
44 15 0.23
45 21 0.33
46 7 0.11
47 4 0.06
48 2 0.03
50 9 0.14
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (46 bp):
AATAATAATAAATATTAATTATAAATATAATATAATTCACTATATA
Found at i:27743 original size:15 final size:18
Alignment explanation
Indices: 27689--27738 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
27679 ACAAATATCA
*
27689 TAATAATATAT-ATTATT
1 TAATATTATATAATTATT
*
27706 AGAATATTATATAATTATT
1 -TAATATTATATAATTATT
27725 TAATATTAT-TAATT
1 TAATATTATATAATT
27739 TTAATTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 5 0.18
18 17 0.61
19 6 0.21
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
TAATATTATATAATTATT
Found at i:28058 original size:41 final size:42
Alignment explanation
Indices: 27986--28064 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 42
27976 ACTCATAAAA
27986 TATTATTTATAAATAATAATATATTAAATAACTATTATATAG
1 TATTATTTATAAATAATAATATATTAAATAACTATTATATAG
* *
28028 TATTATTT-T-AATAATAGTTATATTAGATAACTATTAT
1 TATTATTTATAAATAATA-ATATATTAAATAACTATTAT
28065 TTTATAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
40 7 0.21
41 19 0.56
42 8 0.24
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.48
Consensus pattern (42 bp):
TATTATTTATAAATAATAATATATTAAATAACTATTATATAG
Found at i:28624 original size:22 final size:20
Alignment explanation
Indices: 28574--28624 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 20
28564 AATTATTATA
*
28574 TATAATTTATATTTAATAAT
1 TATAAATTATATTTAATAAT
28594 TATATAATTA-ATTTAATTAAAT
1 TATA-AATTATATTTAA-T-AAT
28616 TAATAAATT
1 T-ATAAATT
28625 GCAATATAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 10 0.38
21 5 0.19
22 8 0.31
23 3 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAAATTATATTTAATAAT
Found at i:29101 original size:15 final size:15
Alignment explanation
Indices: 29076--29112 Score: 56
Period size: 15 Copynumber: 2.4 Consensus size: 15
29066 ATATTAAATT
29076 TATATATTATAATACA
1 TATA-ATTATAATACA
29092 TATAATTATAATACA
1 TATAATTATAATACA
*
29107 TGTAAT
1 TATAAT
29113 AACCTAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 16 0.80
16 4 0.20
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (15 bp):
TATAATTATAATACA
Found at i:29217 original size:29 final size:28
Alignment explanation
Indices: 29150--29223 Score: 78
Period size: 29 Copynumber: 2.6 Consensus size: 28
29140 TGAATTTTCA
* *
29150 AATTATAATTAAATATTATTTAGATAAT
1 AATTATAATTAAATATGAATTAGATAAT
*
29178 AATAATAAATTAAATATGAATTA-ATATTAT
1 AATTAT-AATTAAATATGAATTAGATA--AT
*
29208 CATTATAATTAAATAT
1 AATTATAATTAAATAT
29224 TTCTATTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 8 0.21
29 24 0.63
30 6 0.16
ACGTcount: A:0.53, C:0.01, G:0.03, T:0.43
Consensus pattern (28 bp):
AATTATAATTAAATATGAATTAGATAAT
Found at i:29269 original size:13 final size:12
Alignment explanation
Indices: 29230--29265 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
29220 ATATTTCTAT
29230 TTAAAT-ATTAA
1 TTAAATAATTAA
29241 TTCAAATAATTAA
1 TT-AAATAATTAA
29254 TTAAATAATTAA
1 TTAAATAATTAA
29266 ATTATTTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 2 0.09
12 14 0.61
13 7 0.30
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAAATAATTAA
Found at i:29502 original size:10 final size:10
Alignment explanation
Indices: 29487--29525 Score: 51
Period size: 10 Copynumber: 3.7 Consensus size: 10
29477 ATTAACACTA
29487 AATAATTAAT
1 AATAATTAAT
29497 AATAATTAAT
1 AATAATTAAT
*
29507 AATATTTTAATT
1 AATA-ATTAA-T
29519 AATAATT
1 AATAATT
29526 TAATTACAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 14 0.56
11 6 0.24
12 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
AATAATTAAT
Found at i:29593 original size:30 final size:28
Alignment explanation
Indices: 29559--29624 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 28
29549 TATATTAAAC
29559 TATTAAATATAAAATTTAATAATAAGTCAT
1 TATTAAATA-AAAATTTAAT-ATAAGTCAT
* *
29589 TATTATTAATAATAATTTAATATAATTCAT
1 TATTA--AATAAAAATTTAATATAAGTCAT
29619 TATTAA
1 TATTAA
29625 TTTATTATAA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 1 0.03
30 18 0.56
31 9 0.28
32 4 0.12
ACGTcount: A:0.50, C:0.03, G:0.02, T:0.45
Consensus pattern (28 bp):
TATTAAATAAAAATTTAATATAAGTCAT
Found at i:30673 original size:20 final size:20
Alignment explanation
Indices: 30624--30674 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 20
30614 TTATCATTAA
30624 TAATAATTATTTAACTATAT
1 TAATAATTATTTAACTATAT
* *
30644 TATTATTTATTATAA-TA-ATT
1 TAATAATTATT-TAACTATA-T
30664 TAATAATTATT
1 TAATAATTATT
30675 GAAATATTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (20 bp):
TAATAATTATTTAACTATAT
Found at i:31247 original size:17 final size:19
Alignment explanation
Indices: 31200--31247 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 19
31190 ATTGTTATAG
31200 TTATATTAATTATT-TTTGT
1 TTATA-TAATTATTATTTGT
31219 TTATATAA--ATTATTTG-
1 TTATATAATTATTATTTGT
31235 TTA-ATAATTATTA
1 TTATATAATTATTA
31248 AAAAGTCATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
15 4 0.15
16 6 0.23
17 8 0.31
18 3 0.12
19 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
TTATATAATTATTATTTGT
Found at i:31516 original size:9 final size:9
Alignment explanation
Indices: 31495--31584 Score: 51
Period size: 9 Copynumber: 9.6 Consensus size: 9
31485 AATATAAATT
*
31495 TATAATAAA
1 TATAATTAA
31504 T-TAATTTAA
1 TATAA-TTAA
31513 T-TAATATAA
1 TATAAT-TAA
*
31522 TATAACTAA
1 TATAATTAA
*
31531 TAATAATTCA
1 T-ATAATTAA
31541 TATAATTATAA
1 TATAA-T-TAA
*
31552 TATAATTACT
1 TATAATTA-A
31562 TAATAATTAA
1 T-ATAATTAA
*
31572 T-TAATTAT
1 TATAATTAA
31580 TATAA
1 TATAA
31585 CATTCAATTA
Statistics
Matches: 64, Mismatches: 8, Indels: 18
0.71 0.09 0.20
Matches are distributed among these distances:
8 11 0.17
9 25 0.39
10 14 0.22
11 14 0.22
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (9 bp):
TATAATTAA
Found at i:31547 original size:33 final size:29
Alignment explanation
Indices: 31495--31584 Score: 83
Period size: 33 Copynumber: 2.9 Consensus size: 29
31485 AATATAAATT
31495 TATAATAAATTAATTTAATTAATATAATATAAC
1 TATAAT-AATTAA-TTAATTAATATAAT-T-AC
*
31528 TAATAATAATTCATATAATTATAATATAATTAC
1 T-ATAATAATTAAT-TAA-T-TAATATAATTAC
*
31561 T-TAATAATTAATTAATTATTATAA
1 TATAATAATTAATTAATTAATATAA
31585 CATTCAATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 13
0.76 0.05 0.20
Matches are distributed among these distances:
28 7 0.14
29 1 0.02
30 3 0.06
31 10 0.20
32 1 0.02
33 12 0.24
34 7 0.14
35 9 0.18
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (29 bp):
TATAATAATTAATTAATTAATATAATTAC
Found at i:31553 original size:30 final size:30
Alignment explanation
Indices: 31509--31579 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
31499 ATAAATTAAT
31509 TTAATTAA-TATAATATAACTA-ATAATAA
1 TTAATTAATTATAATATAACTACATAATAA
* * *
31537 TTCATATAATTATAATATAATTACTTAATAA
1 TTAAT-TAATTATAATATAACTACATAATAA
31568 TTAATTAATTAT
1 TTAATTAATTAT
31580 TATAACATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
28 4 0.11
29 3 0.08
30 19 0.53
31 10 0.28
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (30 bp):
TTAATTAATTATAATATAACTACATAATAA
Found at i:31833 original size:19 final size:19
Alignment explanation
Indices: 31804--31847 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
31794 ATAAATTACA
*
31804 ATAATTTTAATTTTAATGTT
1 ATAA-TTTAATTATAATGTT
*
31824 ATAATTTAATTATATTGTT
1 ATAATTTAATTATAATGTT
31843 -TAATT
1 ATAATT
31848 AATAATATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 5 0.23
19 13 0.59
20 4 0.18
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
ATAATTTAATTATAATGTT
Found at i:31855 original size:17 final size:17
Alignment explanation
Indices: 31829--31862 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
31819 ATGTTATAAT
* *
31829 TTAATTATATTGTTTAA
1 TTAATAATATTATTTAA
31846 TTAATAATATTATTTAA
1 TTAATAATATTATTTAA
31863 ATTACTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TTAATAATATTATTTAA
Found at i:32799 original size:23 final size:22
Alignment explanation
Indices: 32755--32800 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
32745 TTTATATAAT
*
32755 TAAATAATTATATTATTAATTA
1 TAAATAATTATATAATTAATTA
* *
32777 TAAATAAATTTTATAATTTATTA
1 TAAAT-AATTATATAATTAATTA
32800 T
1 T
32801 TTGTAATTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 5 0.25
23 15 0.75
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TAAATAATTATATAATTAATTA
Found at i:32827 original size:20 final size:20
Alignment explanation
Indices: 32790--32828 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32780 ATAAATTTTA
*
32790 TAATTTATTATTTGTAATTG
1 TAATTTATTATATGTAATTG
32810 TAATTTATATATAT-TAATT
1 TAATTTAT-TATATGTAATT
32829 AATTAATAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (20 bp):
TAATTTATTATATGTAATTG
Found at i:32985 original size:27 final size:30
Alignment explanation
Indices: 32923--32993 Score: 78
Period size: 31 Copynumber: 2.5 Consensus size: 30
32913 ATATAATTAA
32923 TTAATTAATAAATATTTATTTAAAGTTATAT
1 TTAATTAATAAATA-TTATTTAAAGTTATAT
* *
32954 ATAATTTATAAATA-TA-TTAAA-TTATAT
1 TTAATTAATAAATATTATTTAAAGTTATAT
*
32981 TTAA-TAAAAAATA
1 TTAATTAATAAATA
32994 ATGGTTATCA
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
26 7 0.20
27 9 0.26
28 5 0.14
29 2 0.06
31 12 0.34
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (30 bp):
TTAATTAATAAATATTATTTAAAGTTATAT
Found at i:33063 original size:14 final size:14
Alignment explanation
Indices: 33036--33115 Score: 62
Period size: 14 Copynumber: 5.7 Consensus size: 14
33026 TATAATTTAG
33036 ATATAA-ATTAATT
1 ATATAATATTAATT
33049 A-ATAATATATAATT
1 ATATAATAT-TAATT
33063 ATTATAATATTAATT
1 A-TATAATATTAATT
* *
33078 ATTTAA-ATTTATACT
1 ATATAATA-TTA-ATT
33093 ATATAA-ATT-ATT
1 ATATAATATTAATT
33105 ATTATAATATT
1 A-TATAATATT
33116 TTAAAATTTA
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
12 7 0.13
13 9 0.16
14 18 0.33
15 14 0.25
16 7 0.13
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (14 bp):
ATATAATATTAATT
Found at i:33078 original size:15 final size:14
Alignment explanation
Indices: 33037--33111 Score: 61
Period size: 15 Copynumber: 5.4 Consensus size: 14
33027 ATAATTTAGA
33037 TATAAATTAATTA-
1 TATAAATTAATTAT
33050 -ATAATATATAATTAT
1 TATAA-AT-TAATTAT
33065 TATAATATTAATTAT
1 TATAA-ATTAATTAT
*
33080 T-TAAATTTA-TACT
1 TATAAATTAATTA-T
33093 ATATAAATT-ATTAT
1 -TATAAATTAATTAT
33107 TATAA
1 TATAA
33112 TATTTTAAAA
Statistics
Matches: 53, Mismatches: 1, Indels: 16
0.76 0.01 0.23
Matches are distributed among these distances:
12 6 0.11
13 12 0.23
14 12 0.23
15 16 0.30
16 7 0.13
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (14 bp):
TATAAATTAATTAT
Found at i:33262 original size:26 final size:27
Alignment explanation
Indices: 33227--33281 Score: 71
Period size: 26 Copynumber: 2.1 Consensus size: 27
33217 ACATATTTAA
33227 TTAATATT-AAATTTATGAA-TATTGATT
1 TTAATATTAAAATTT-T-AATTATTGATT
33254 TTAAT-TTAAAATTTTAATTATTGATT
1 TTAATATTAAAATTTTAATTATTGATT
33280 TT
1 TT
33282 TACTAATTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
25 2 0.08
26 13 0.50
27 11 0.42
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (27 bp):
TTAATATTAAAATTTTAATTATTGATT
Found at i:33423 original size:19 final size:19
Alignment explanation
Indices: 33401--33440 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
33391 ATAACAATTA
*
33401 TATTAATAATAATATTTAT
1 TATTAATAATAATACTTAT
* *
33420 TATTTATATTAATACTTAT
1 TATTAATAATAATACTTAT
33439 TA
1 TA
33441 ACTTATTATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTAATAATAATACTTAT
Found at i:34117 original size:16 final size:16
Alignment explanation
Indices: 34077--34118 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
34067 TTTATATTTA
34077 ATTAATAAT-TAAATT
1 ATTAATAATATAAATT
*
34092 ATT-ATAAATATCAATT
1 ATTAAT-AATATAAATT
34108 ATTAATAATAT
1 ATTAATAATAT
34119 TTTATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 6 0.26
16 13 0.57
17 2 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTAATAATATAAATT
Found at i:35432 original size:181 final size:181
Alignment explanation
Indices: 34667--36051 Score: 1294
Period size: 181 Copynumber: 7.7 Consensus size: 181
34657 TTAATTATAT
* * * * * *
34667 AAATATTAATAAAGTAATAATATTTTATTTTGGATAAGCTTTTAT-AAAATGAAACAATTGTTTT
1 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATA-GAAACAATTGTTTT
* * * * * * *
34731 ATGATAAAAGAAAAGGTCATAACGATTTTAAA-ATGATAATTGTTTAAATAGTCATAATTATTTA
65 ATGACAAAACAAAAGGTCATAACGATTTGAAATA-GATAATTATTCAAATAGTCATAACTATTTG
* * * *
34795 AATTTGTTTTGGTAAACAAATTTATTTTTT-AAT-TCCTTGCTTATTAATTTTTTG
129 AACTTG-TTCGGTAAACAAATTTATTTTTTAAATAT-TTTACTTATTAA-TTTTTG
* * * * * *
34849 -AATGTTAATAAAATAGTATTATTTTATTTCAAATAAGCATGTATGAACT-G-AACAATTATTTT
1 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAA-TAGAAACAATTGTTTT
* * * *
34911 ATGACTAAACAAAAGGTCAAAATGATTTGAAATAGATAATTATT-ATAATAGTCTTAACTATTTG
65 ATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCA-AATAGTCATAACTATTTG
** *** * * * * *
34975 AACCGGTTCAACAAATACATTTATTTTTTAAATCTCTTACTTATTAATTTGT-
129 AACTTGTTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
* ** * * * *
35027 AGAATATTATTAGTTTAGCAATATTTTACTTT-GAATAAG-TTTGTATGGACAGAAACAATTGTT
1 A-AATATTAATAAATTAGTATTATTTTA-TTTCGAATAAGCTTT-TATGAATAGAAACAATTGTT
* * * *
35090 TTATGACAAAAC-AAAGATCGTATCGATTTGAGATAGATAATTATTCAAAT-GTCATAACTATTT
63 TTATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
* * * * * * * **
35153 GAA-TTGGTCTGATAAATAGATATAGTTTTT-AA-A-TCT-CTTATTAATTTTCA
128 GAACTTGTTC-GGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
* * *
35203 AAATATTAACAAATTAGTATTATTTTATTTTGAATAA-TTTTGTATGAATAGAAACAATTGTTTT
1 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTT-TATGAATAGAAACAATTGTTTT
* * * * *
35267 ATTACAAAA-TAAAGGATCATAACGATTTGAAATAAATAATTATTTAAATAGTCATAATTATTTG
65 ATGACAAAACAAAAGG-TCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTG
**
35331 AA-TTCACTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
129 AACTT-GTTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
* *
35384 AAATTTTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGGTTTA
1 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGTTTTA
* * *
35449 TGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTGTTCAAATGGTCATAATTATTTTGA
66 TGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTA-TTTGA
* ** * * * * *
35514 ACGTGTTC-AAAAAAAAATTT-TATTTTATATATTTTTATTTATTAATCTTTG
130 ACTTGTTCGGTAAACAAATTTATTTTTTAAATA-TTTTACTTATTAATTTTTG
* * * * * *
35565 GAATATTAGTAAATTTA-TATTAATTTATTT-GAAATAAACTTGTATGAATAGAAACAATTATTT
1 AAATATTAATAAA-TTAGTATTATTTTATTTCG-AATAAGCTTTTATGAATAGAAACAATTGTTT
* * *
35628 TATGGCAAAACAAAATGTCATAACAATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTG
64 TATGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTG
* * * * * *
35693 AACTTGTTTGGTAAACAGATTCATTTTTTAAATCTCTTACTCATTAATTTTTG
129 AACTTGTTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
* * * * * * * *
35746 AAATAGTAATAAGTTAGTATTATTTTATTTCAAATAAGCCTATATGAATTGATATAATTGTTTTA
1 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGTTTTA
** * * * *
35811 TGGTAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTCAGATAGTTATTACTATTTGAA
66 TGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
** * * *
35876 CTTGTTTAGTAAACATATTTATTTTTT-AATCTTTTACTTATTAATTGTTG
131 CTTGTTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
* * ** * * * *
35926 AAATATTAATAAATTAATATTATTTTAATTCGAATAAGCTAATATGAACAAAAATACTTGTTTTA
1 AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGTTTTA
* *
35991 TGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTGTTTC-AATAGTCATAACTATT
66 TGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATT-ATTCAAATAGTCATAACTATT
36052 CAAAATTATT
Statistics
Matches: 979, Mismatches: 187, Indels: 76
0.79 0.15 0.06
Matches are distributed among these distances:
174 3 0.00
175 73 0.07
176 30 0.03
177 32 0.03
178 9 0.01
179 54 0.06
180 287 0.29
181 461 0.47
182 29 0.03
183 1 0.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.42
Consensus pattern (181 bp):
AAATATTAATAAATTAGTATTATTTTATTTCGAATAAGCTTTTATGAATAGAAACAATTGTTTTA
TGACAAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
CTTGTTCGGTAAACAAATTTATTTTTTAAATATTTTACTTATTAATTTTTG
Found at i:36319 original size:300 final size:300
Alignment explanation
Indices: 35772--36346 Score: 758
Period size: 300 Copynumber: 1.9 Consensus size: 300
35762 GTATTATTTT
* * * * ** *
35772 ATTTCAAATAAGCCTATATGAATTGATATAATTGTTTTATGGTAAAACAAAAGGTCATAACGATT
1 ATTTCAAATAAGCCTATATGAATAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACAATT
* ** * * *
35837 TAAAATAGATAATTATTCAGATAGTTATTACTATTTGAACTTGTTTAGTAAACATATTTATTTTT
66 TAAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTTGTTTAGTAAACAGATTCATTTTT
* * * *
35902 TAATCTTTTACTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTAATTCGAATAAGCTA
131 AAATCTCTCACTTATTAATTGTTGAAATATTAATAAATTAATATTATGTTAATTCGAATAAGCTA
* * * *
35967 ATATGAACAAAAATACTTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTG
196 ATATGAACAAAAACAATTGTTTTATAACAAAACAAAAGGTCAAAACGATTTGAAATAAATAATTG
36032 TTTC-AATAGTCATAACTATTCAAAATTATTCAGTAAACAG
261 -TTCAAATAGTCATAACTATTCAAAATTATTCAGTAAACAG
* * * * *
36072 ATTTGAAATAAGCTTGTATGAATAGAAAAAATTATTTTATGACAATACAAAAGGTTATAACAATT
1 ATTTCAAATAAGCCTATATGAATAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACAATT
* * * *
36137 TGAAATAGATAATTGTTCAAATAGCCATAATTATTTGAACTTGTTTGGTAAACAGATTCATTTTT
66 TAAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTTGTTTAGTAAACAGATTCATTTTT
* * * *
36202 AAATCTCTCACTTATTAATTTTTGGAATATTAATAAATTAGA-ATTATGTTATTTTGAATAAGCT
131 AAATCTCTCACTTATTAATTGTTGAAATATTAATAAATTA-ATATTATGTTAATTCGAATAAGCT
** * * * *
36266 TGTATGAACAAAAACAATTGTTTTGTAAGAAAACAAAAGGTCAAAATGATTTGAAATAGATAATT
195 AATATGAACAAAAACAATTGTTTTATAACAAAACAAAAGGTCAAAACGATTTGAAATAAATAATT
36331 GTTCAAATAGTCATAA
260 GTTCAAATAGTCATAA
36347 TTGTTTGCAC
Statistics
Matches: 233, Mismatches: 40, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
299 3 0.01
300 229 0.98
301 1 0.00
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.38
Consensus pattern (300 bp):
ATTTCAAATAAGCCTATATGAATAGAAAAAATTATTTTATGACAAAACAAAAGGTCATAACAATT
TAAAATAGATAATTATTCAAATAGCCATAACTATTTGAACTTGTTTAGTAAACAGATTCATTTTT
AAATCTCTCACTTATTAATTGTTGAAATATTAATAAATTAATATTATGTTAATTCGAATAAGCTA
ATATGAACAAAAACAATTGTTTTATAACAAAACAAAAGGTCAAAACGATTTGAAATAAATAATTG
TTCAAATAGTCATAACTATTCAAAATTATTCAGTAAACAG
Found at i:36340 original size:16 final size:17
Alignment explanation
Indices: 36319--36351 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36309 AAATGATTTG
36319 AAATAG-ATAATTGTTC
1 AAATAGCATAATTGTTC
36335 AAATAGTCATAATTGTT
1 AAATAG-CATAATTGTT
36352 TGCACTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (17 bp):
AAATAGCATAATTGTTC
Found at i:36428 original size:18 final size:19
Alignment explanation
Indices: 36398--36441 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
36388 CATTACTTAT
*
36398 TAATT-TTCAAAATATTAA
1 TAATTGTTCAAAATAGTAA
*
36416 TAATTGTTC-AAATAGTCA
1 TAATTGTTCAAAATAGTAA
36434 TAATTGTT
1 TAATTGTT
36442 TGCACTGGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.45
Consensus pattern (19 bp):
TAATTGTTCAAAATAGTAA
Found at i:36478 original size:90 final size:90
Alignment explanation
Indices: 36325--36508 Score: 359
Period size: 90 Copynumber: 2.0 Consensus size: 90
36315 TTTGAAATAG
36325 ATAATTGTTCAAATAGTCATAATTGTTTGCACTAGTCAAGCCAAAAGATACATTTTCTAAATCCA
1 ATAATTGTTCAAATAGTCATAATTGTTTGCACTAGTCAAGCCAAAAGATACATTTTCTAAATCCA
36390 TTACTTATTAATTTTCAAAATATTA
66 TTACTTATTAATTTTCAAAATATTA
*
36415 ATAATTGTTCAAATAGTCATAATTGTTTGCACTGGTCAAGCCAAAAGATACATTTTCTAAATCCA
1 ATAATTGTTCAAATAGTCATAATTGTTTGCACTAGTCAAGCCAAAAGATACATTTTCTAAATCCA
36480 TTACTTATTAATTTTCAAAATATTA
66 TTACTTATTAATTTTCAAAATATTA
36505 ATAA
1 ATAA
36509 ATAGTTATGG
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 93 1.00
ACGTcount: A:0.39, C:0.14, G:0.08, T:0.39
Consensus pattern (90 bp):
ATAATTGTTCAAATAGTCATAATTGTTTGCACTAGTCAAGCCAAAAGATACATTTTCTAAATCCA
TTACTTATTAATTTTCAAAATATTA
Found at i:36659 original size:17 final size:18
Alignment explanation
Indices: 36628--36669 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
36618 CAACTAACAC
*
36628 AATTATTAATTAAAAATA
1 AATTATTAATAAAAAATA
36646 AATTA-TAATAAAAAATA
1 AATTATTAATAAAAAATA
*
36663 AACTATT
1 AATTATT
36670 TGTTATGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
AATTATTAATAAAAAATA
Found at i:36983 original size:17 final size:16
Alignment explanation
Indices: 36943--36992 Score: 61
Period size: 14 Copynumber: 3.2 Consensus size: 16
36933 ATCTATACAG
36943 TTATAATTAA-TTTAA
1 TTATAATTAATTTTAA
36958 TTA-AA-TAATTTTAA
1 TTATAATTAATTTTAA
36972 TTATCAATTAATTTATAA
1 TTAT-AATTAATTT-TAA
36990 TTA
1 TTA
36993 ATAAAAAAAC
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 3 0.10
14 10 0.33
15 3 0.10
16 2 0.07
17 6 0.20
18 6 0.20
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TTATAATTAATTTTAA
Found at i:37150 original size:26 final size:26
Alignment explanation
Indices: 37121--37187 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
37111 AATACTTATA
37121 ATTTATTATTAATTATCTGAA-TATTG
1 ATTT-TTATTAATTATCTGAATTATTG
* * * *
37147 ATTTTAATTTAAATATTTTAATTATTG
1 ATTTTTA-TTAATTATCTGAATTATTG
37174 ATTTTTATTAATTA
1 ATTTTTATTAATTA
37188 ATAAATATAT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.06
26 20 0.61
27 11 0.33
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.58
Consensus pattern (26 bp):
ATTTTTATTAATTATCTGAATTATTG
Found at i:37152 original size:27 final size:29
Alignment explanation
Indices: 37122--37189 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 29
37112 ATACTTATAA
37122 TTTATTATTAATTATCTGAA-TATTGA-T
1 TTTATTATTAATTATCTGAATTATTGATT
* * * *
37149 TTTAAT-TTAAATATTTTAATTATTGATT
1 TTTATTATTAATTATCTGAATTATTGATT
37177 TTTATTAATTAAT
1 TTTATT-ATTAAT
37190 AAATATATAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 6 0.19
30 4 0.13
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (29 bp):
TTTATTATTAATTATCTGAATTATTGATT
Found at i:37303 original size:18 final size:18
Alignment explanation
Indices: 37280--37332 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
37270 ATGACAAAAC
37280 AAAATATCATAATTATTT
1 AAAATATCATAATTATTT
* *
37298 AAAATA-AATAATT-GTT
1 AAAATATCATAATTATTT
*
37314 CAAATAATCATAATTATTT
1 AAAAT-ATCATAATTATTT
37333 GAACTGGTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
16 6 0.22
17 7 0.26
18 12 0.44
19 2 0.07
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.42
Consensus pattern (18 bp):
AAAATATCATAATTATTT
Found at i:39031 original size:182 final size:181
Alignment explanation
Indices: 38725--39161 Score: 474
Period size: 182 Copynumber: 2.4 Consensus size: 181
38715 GCTTATTCAA
* ** *
38725 AATAAAATAATACTAATTTATTAACATTAAAAAAATTAATAAGCAAGAA-ATTTAAAAAAATAAA
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG-TAGAAGATTT-AAAAAATAAA
* * * * * * * * *
38789 TTTA-TTTACCGAA-CAAGCTCAAATAGTTAT-GACTATTTAAATAATTATCTATCTAAAATCAT
64 -TCAGTTTATCGAATC-AGTTAAAATAATTATGGTC-ATTTGAACATTTATCTATCTAAAATCAT
* *
38851 TATGACCTTTTATTTT-ATCATAAAACAATTGTTTTAGATCATAAAAGCTTGTCCCA-
126 TATGAACTTTTATTTTGA-CATAAAACAATTGTTTTACATCATAAAAGCTT-TCCCAT
* * * * *
38907 AATAAAATAATACTACTTTATTAATATTTTAAAAATTGATAAATTA-AAGATTTAAAATATAAAT
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAAT-AAGTAGAAGATTTAAAAAATAAAT
*
38971 CAGTTTATCGAATCAGTTAAAATAATTATGGTCATTTGAACATTTATCTATTTCAAAATCATTAT
65 CAGTTTATCGAATCAGTTAAAATAATTATGGTCATTTGAACATTTATCTATCT-AAAATCATTAT
* * ** **
39036 GAACTTTTGTTTTGACATAAAACAATTGTTTTTCATCATACTAGCTTTTTCAT
129 GAACTTTTATTTTGACATAAAACAATTGTTTTACATCATAAAAGCTTTCCCAT
* *
39089 AATAAAATAATATTAATTTATTAATATTTCAAAAATTAATAAGTAGGAGATTTAAAAAATAAATC
1 AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAGAAGATTTAAAAAATAAATC
*
39154 TGTTTATC
66 AGTTTATC
39162 AAACAAATTC
Statistics
Matches: 212, Mismatches: 34, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
180 2 0.01
181 54 0.25
182 153 0.72
183 3 0.01
ACGTcount: A:0.45, C:0.10, G:0.07, T:0.39
Consensus pattern (181 bp):
AATAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAGTAGAAGATTTAAAAAATAAATC
AGTTTATCGAATCAGTTAAAATAATTATGGTCATTTGAACATTTATCTATCTAAAATCATTATGA
ACTTTTATTTTGACATAAAACAATTGTTTTACATCATAAAAGCTTTCCCAT
Found at i:39266 original size:171 final size:171
Alignment explanation
Indices: 39051--39358 Score: 410
Period size: 171 Copynumber: 1.8 Consensus size: 171
39041 TTTGTTTTGA
* * * *
39051 CATAAAACAATTGTTTTTCATCATACTAGCTTTTTCATAATAAAATAATATTAATTTATTAATAT
1 CATAAAACAATTATTTTTCATCATACAAGCTTTTTCATAATAAAATAATATTAATGTAATAATAT
* * *
39116 T-TCAAAAATTAATAAGTAGGAGATTTAAAAAATAAATCTGTTT-ATCAAACAAATTCAAATAGT
66 TAT-AAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTGCT-AAACAAATTCAAATAGT
*
39179 TATGGCTATTTGTATTTCAATTTCTTATAACCTTTTGTTCTTT
129 TAAGGCTATTTGTATTTCAATTTCTTATAACCTTTTGTTCTTT
*
39222 CATAAAATAATTATTTTT-ATTCATACAAG-TTTATTCGA-AATAAAATAATATTAATGTAATAA
1 CATAAAACAATTATTTTTCA-TCATACAAGCTTT-TTC-ATAATAAAATAATATTAATGTAATAA
* * * * *
39284 TATTATGAAAATTAATAACTAATAGATTTAAAAAATAAATTTGTTTGCTAAACTAGTTCAAATAG
63 TATTATAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTGCTAAACAAATTCAAATAG
39349 TTAAGGCTAT
128 TTAAGGCTAT
39359 AGGAACAATT
Statistics
Matches: 118, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
170 4 0.03
171 111 0.94
172 3 0.03
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (171 bp):
CATAAAACAATTATTTTTCATCATACAAGCTTTTTCATAATAAAATAATATTAATGTAATAATAT
TATAAAAATTAATAACTAAGAGATTTAAAAAATAAATCTGTTTGCTAAACAAATTCAAATAGTTA
AGGCTATTTGTATTTCAATTTCTTATAACCTTTTGTTCTTT
Found at i:39486 original size:34 final size:33
Alignment explanation
Indices: 39448--39516 Score: 84
Period size: 34 Copynumber: 2.1 Consensus size: 33
39438 ATTAAAAGTA
*
39448 AATTAATTTTAAATAATTGATTATTATATTTAAT
1 AATTAATATTAAATAATT-ATTATTATATTTAAT
* * * *
39482 AATTAGTATTAAATAATTATTTTTATTTTTGAT
1 AATTAATATTAAATAATTATTATTATATTTAAT
39515 AA
1 AA
39517 ACTTTAAATA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 14 0.47
34 16 0.53
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (33 bp):
AATTAATATTAAATAATTATTATTATATTTAAT
Found at i:39672 original size:13 final size:13
Alignment explanation
Indices: 39654--39678 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
39644 TAATTTATCT
39654 AATAATTAGATTA
1 AATAATTAGATTA
39667 AATAATTAGATT
1 AATAATTAGATT
39679 TATTTGTATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (13 bp):
AATAATTAGATTA
Found at i:39804 original size:13 final size:14
Alignment explanation
Indices: 39785--39823 Score: 62
Period size: 13 Copynumber: 2.8 Consensus size: 14
39775 ATATATTAGT
39785 TTTAATATTTAAAA
1 TTTAATATTTAAAA
39799 -TTAATATTTAAAA
1 TTTAATATTTAAAA
39812 TTTAAATATTTA
1 TTT-AATATTTA
39824 TATTGTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.57
14 2 0.09
15 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
TTTAATATTTAAAA
Found at i:40168 original size:19 final size:18
Alignment explanation
Indices: 40140--40177 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
40130 TTATAATAAG
40140 TTATAGTATA-ACTTATTA
1 TTATAGTATATA-TTATTA
40158 TTATAAGTATATATTATTA
1 TTAT-AGTATATATTATTA
40177 T
1 T
40178 AATTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 13 0.72
20 1 0.06
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (18 bp):
TTATAGTATATATTATTA
Found at i:40290 original size:30 final size:28
Alignment explanation
Indices: 40215--40290 Score: 66
Period size: 30 Copynumber: 2.6 Consensus size: 28
40205 AGTTATTAAT
* *
40215 TATTTTAA-TAATTTATAATACTAATAA
1 TATTATAATTAATTAATAATACTAATAA
40242 TATTATAATT-ATCCTAATAATTACTAATAA
1 TATTATAATTAAT--TAATAA-TACTAATAA
**
40272 TGATTATCTTTAATTAATA
1 T-ATTATAATTAATTAATA
40291 TTATATAATA
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
27 9 0.23
28 1 0.03
29 5 0.13
30 15 0.38
31 7 0.18
32 2 0.05
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.47
Consensus pattern (28 bp):
TATTATAATTAATTAATAATACTAATAA
Found at i:40351 original size:30 final size:31
Alignment explanation
Indices: 40289--40357 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
40279 CTTTAATTAA
**
40289 TATTATATAATAGAATTTAATATAAATAATT
1 TATTATATAATAGAACATAATATAAATAATT
*
40320 TATTA-ATAATAGAAACATAATTTAAAT-ATT
1 TATTATATAATAG-AACATAATATAAATAATT
40350 TATTATAT
1 TATTATAT
40358 TTATCGTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 15 0.45
31 18 0.55
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (31 bp):
TATTATATAATAGAACATAATATAAATAATT
Found at i:40574 original size:15 final size:14
Alignment explanation
Indices: 40492--40575 Score: 53
Period size: 15 Copynumber: 5.6 Consensus size: 14
40482 GATTAAGTTA
*
40492 AATAACTTAACTAAT
1 AATAATTTAA-TAAT
*
40507 -ATAATCTAATATTAT
1 AATAATTTAATA--AT
*
40522 AATAATTATATATTAT
1 AATAATT-TA-ATAAT
40538 AATAATTTAATAAT
1 AATAATTTAATAAT
* *
40552 ATTAAATTTATTAATT
1 AAT-AATTTAATAA-T
40568 AATAATTT
1 AATAATTT
40576 TGGATTATAG
Statistics
Matches: 54, Mismatches: 8, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
13 2 0.04
14 13 0.24
15 18 0.33
16 17 0.31
17 2 0.04
18 2 0.04
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (14 bp):
AATAATTTAATAAT
Found at i:40696 original size:17 final size:15
Alignment explanation
Indices: 40659--40692 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
40649 ATAATATGAT
*
40659 TATAATTTATATTTA
1 TATAAATTATATTTA
*
40674 TATAAATTATAATTA
1 TATAAATTATATTTA
40689 TATA
1 TATA
40693 TAAAGTACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATAAATTATATTTA
Found at i:40831 original size:15 final size:15
Alignment explanation
Indices: 40813--40844 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
40803 ATTAATCAAA
*
40813 TATATATTATAATAT
1 TATATAATATAATAT
40828 TATATAATATAATAT
1 TATATAATATAATAT
40843 TA
1 TA
40845 GTTAATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATAATATAATAT
Found at i:40850 original size:15 final size:15
Alignment explanation
Indices: 40820--40874 Score: 53
Period size: 15 Copynumber: 3.7 Consensus size: 15
40810 AAATATATAT
40820 TATAATATTA-TATAA
1 TATAATATTAGT-TAA
40835 TATAATATTAGTTAA
1 TATAATATTAGTTAA
*
40850 TTATATTAATTAGTT-A
1 -TATAAT-ATTAGTTAA
40866 TATAA-ATTA
1 TATAATATTA
40875 AATATATTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
13 4 0.11
15 17 0.49
16 7 0.20
17 7 0.20
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (15 bp):
TATAATATTAGTTAA
Found at i:40857 original size:13 final size:13
Alignment explanation
Indices: 40839--40905 Score: 55
Period size: 13 Copynumber: 5.0 Consensus size: 13
40829 ATATAATATA
*
40839 ATATTAGTTAATT
1 ATATTAATTAATT
*
40852 ATATTAATTAGTT
1 ATATTAATTAATT
* *
40865 ATATAAATTAAAT
1 ATATTAATTAATT
*
40878 ATATT-CTTATTATT
1 ATATTAATTA--ATT
40892 ATAATTAATTAATT
1 AT-ATTAATTAATT
40906 TTATAATTGA
Statistics
Matches: 41, Mismatches: 9, Indels: 7
0.72 0.16 0.12
Matches are distributed among these distances:
12 3 0.07
13 25 0.61
14 7 0.17
15 3 0.07
16 3 0.07
ACGTcount: A:0.43, C:0.01, G:0.03, T:0.52
Consensus pattern (13 bp):
ATATTAATTAATT
Found at i:41040 original size:22 final size:23
Alignment explanation
Indices: 41015--41073 Score: 77
Period size: 22 Copynumber: 2.6 Consensus size: 23
41005 TAAACTATAT
*
41015 TAATATATATTATA-AAATAATA
1 TAATATATATTAAATAAATAATA
*
41037 TAATATAT-TAAAATAAATAATA
1 TAATATATATTAAATAAATAATA
41059 TAATATATTATTAAA
1 TAATATA-TATTAAA
41074 GATTATAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 3 0.10
22 23 0.74
23 1 0.03
24 4 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
TAATATATATTAAATAAATAATA
Found at i:41044 original size:20 final size:20
Alignment explanation
Indices: 41019--41083 Score: 76
Period size: 20 Copynumber: 3.1 Consensus size: 20
41009 CTATATTAAT
41019 ATATATTATAAAATAATATA
1 ATATATTATAAAATAATATA
*
41039 ATATATTAAAATAAATAATATA
1 ATATATT-ATA-AAATAATATA
* * *
41061 ATATATTATTAAAGATTATA
1 ATATATTATAAAATAATATA
41081 ATA
1 ATA
41084 ATTTTAATAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
20 18 0.47
21 3 0.08
22 17 0.45
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
ATATATTATAAAATAATATA
Found at i:41056 original size:17 final size:18
Alignment explanation
Indices: 41015--41060 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
41005 TAAACTATAT
41015 TAATAT-ATAT-TATAAAA
1 TAATATAATATAT-TAAAA
41032 TAATATAATATATTAAAA
1 TAATATAATATATTAAAA
41050 TAA-ATAATATA
1 TAATATAATATA
41061 ATATATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 14 0.52
18 12 0.44
19 1 0.04
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATATAATATATTAAAA
Done.