Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168474.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_73, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125844
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
File 2 of 3
Found at i:41081 original size:25 final size:26
Alignment explanation
Indices: 41023--41083 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 26
41013 ATTAATATAT
*
41023 ATTATAAAATAATATAATATATTAAA
1 ATTATAATATAATATAATATATTAAA
*
41049 ATAAATAATATAATAT-AT-TATTAAA
1 AT-TATAATATAATATAATATATTAAA
41074 GATTATAATA
1 -ATTATAATA
41084 ATTTTAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
25 13 0.43
26 6 0.20
27 11 0.37
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (26 bp):
ATTATAATATAATATAATATATTAAA
Found at i:44134 original size:20 final size:22
Alignment explanation
Indices: 44095--44144 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
44085 TGAAATAGAT
*
44095 AATTATTTTAATAGTAATTA-A
1 AATTATTTTAATAATAATTATA
*
44116 AATTATTTT-TTAATAATTATA
1 AATTATTTTAATAATAATTATA
*
44137 AATAATTT
1 AATTATTT
44145 CAAATTTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
AATTATTTTAATAATAATTATA
Found at i:45642 original size:27 final size:28
Alignment explanation
Indices: 45575--45642 Score: 68
Period size: 27 Copynumber: 2.4 Consensus size: 28
45565 TTAGATATCT
45575 ATTAATTAATAAAAATCAATAATTAAAATA
1 ATTAA-TAAT-AAAATCAATAATTAAAATA
* * * *
45605 TTTAA-ATTAAAATCAAT-ATTCAGATA
1 ATTAATAATAAAATCAATAATTAAAATA
45631 ATTAATAATAAA
1 ATTAATAATAAA
45643 TTATAACTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
26 11 0.35
27 14 0.45
28 2 0.06
30 4 0.13
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.35
Consensus pattern (28 bp):
ATTAATAATAAAATCAATAATTAAAATA
Found at i:45643 original size:26 final size:27
Alignment explanation
Indices: 45577--45643 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
45567 AGATATCTAT
45577 TAATTAATAA-AAATCAATAATTAAAA
1 TAATTAATAATAAATCAATAATTAAAA
* * * *
45603 TATTTAA-ATTAAAATCAAT-ATTCAGA
1 TAATTAATAAT-AAATCAATAATTAAAA
45629 TAATTAATAATAAAT
1 TAATTAATAATAAAT
45644 TATAACTAAG
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
25 1 0.03
26 21 0.66
27 10 0.31
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.36
Consensus pattern (27 bp):
TAATTAATAATAAATCAATAATTAAAA
Found at i:46012 original size:19 final size:19
Alignment explanation
Indices: 45988--46039 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
45978 ATTTATAATT
45988 ATTTATTAATTACGAATAA
1 ATTTATTAATTACGAATAA
* **
46007 ATTTATTAGATTGCTTATAA
1 ATTTATTA-ATTACGAATAA
46027 ATTTATATAATTA
1 ATTTAT-TAATTA
46040 TGTAATATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 8 0.30
20 17 0.63
21 2 0.07
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (19 bp):
ATTTATTAATTACGAATAA
Found at i:46172 original size:17 final size:18
Alignment explanation
Indices: 46150--46188 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
46140 TATATTATTA
*
46150 TTATTATATATAAT-AAT
1 TTATTATAAATAATAAAT
*
46167 TTATTATAAATTATAAAT
1 TTATTATAAATAATAAAT
46185 TTAT
1 TTAT
46189 ATTAATAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTATAAATAATAAAT
Found at i:46852 original size:20 final size:17
Alignment explanation
Indices: 46813--46855 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
46803 CGAAATAATC
*
46813 TAATAATAATCTCAAAT
1 TAATAATAATCTAAAAT
46830 TAATAATAATCATTAAAACT
1 TAATAATAATC--TAAAA-T
46850 TAATAA
1 TAATAA
46856 CTAAGAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 11 0.50
19 4 0.18
20 7 0.32
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (17 bp):
TAATAATAATCTAAAAT
Found at i:47065 original size:20 final size:20
Alignment explanation
Indices: 47037--47086 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
47027 TAAGAAATTT
* *
47037 TAATGTTATAATATATAAAA
1 TAATTTTATAATAAATAAAA
* *
47057 TAATTTTATATTAAATAAAT
1 TAATTTTATAATAAATAAAA
*
47077 TTATTTTATA
1 TAATTTTATA
47087 TATTTTTAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (20 bp):
TAATTTTATAATAAATAAAA
Found at i:47072 original size:15 final size:15
Alignment explanation
Indices: 47048--47099 Score: 52
Period size: 15 Copynumber: 3.5 Consensus size: 15
47038 AATGTTATAA
*
47048 TATATAAAATAATTT
1 TATATTAAATAATTT
*
47063 TATATTAAATAAATT
1 TATATTAAATAATTT
* * *
47078 TATTTTATATATTTT
1 TATATTAAATAATTT
47093 TA-ATTAA
1 TATATTAA
47100 TTATTATAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 3 0.10
15 26 0.90
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTAAATAATTT
Found at i:47116 original size:14 final size:14
Alignment explanation
Indices: 47093--47142 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
47083 TATATATTTT
47093 TAAT-TAATTATTA
1 TAATATAATTATTA
*
47106 TAA-ATATATTATAA
1 TAATATA-ATTATTA
*
47120 TAATATAATTATTT
1 TAATATAATTATTA
47134 TATATATAA
1 TA-ATATAA
47143 ATAATTTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 5 0.17
14 16 0.53
15 9 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATATAATTATTA
Found at i:47126 original size:19 final size:19
Alignment explanation
Indices: 47104--47159 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 19
47094 AATTAATTAT
47104 TATAAATATATTATAATAA
1 TATAAATATATTATAATAA
* *
47123 TATAATTATTTTATATATAA
1 TATAAATATATTATA-ATAA
*
47143 -AT-AATTTA-TATAATAA
1 TATAAATATATTATAATAA
47159 T
1 T
47160 TTATATTGTT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 4 0.13
17 4 0.13
18 3 0.10
19 15 0.50
20 4 0.13
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TATAAATATATTATAATAA
Found at i:47142 original size:15 final size:15
Alignment explanation
Indices: 47122--47160 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
47112 TATTATAATA
*
47122 ATATAATTATTTTAT
1 ATATAATTAATTTAT
*
47137 ATATAAATAATTTAT
1 ATATAATTAATTTAT
47152 ATAATAATT
1 AT-ATAATT
47161 TATATTGTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
15 15 0.75
16 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
ATATAATTAATTTAT
Found at i:47159 original size:12 final size:13
Alignment explanation
Indices: 47136--47165 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
47126 AATTATTTTA
47136 TATATAAATAATT
1 TATATAAATAATT
47149 TATAT-AATAATT
1 TATATAAATAATT
47161 TATAT
1 TATAT
47166 TGTTATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TATATAAATAATT
Found at i:47165 original size:51 final size:47
Alignment explanation
Indices: 47044--47166 Score: 113
Period size: 51 Copynumber: 2.5 Consensus size: 47
47034 TTTTAATGTT
* * **
47044 ATAATATATAAAATAATTTTATATTAAATAAATTTATTTTATATATTT
1 ATAATTTATATAATAA-TTTATATTAAATAAATTTATTTTATATATAA
* * * *
47092 TTAATTAATTATTATAA-ATATATTATAATAATATAATTATTTTATATATAA
1 ATAATTTA-TATAATAATTTATATTA-AATAA-AT--TTATTTTATATATAA
47143 ATAATTTATATAATAATTTATATT
1 ATAATTTATATAATAATTTATATT
47167 GTTATTTAAG
Statistics
Matches: 57, Mismatches: 12, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
47 7 0.12
48 10 0.18
49 8 0.14
50 7 0.12
51 25 0.44
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (47 bp):
ATAATTTATATAATAATTTATATTAAATAAATTTATTTTATATATAA
Found at i:47307 original size:3 final size:3
Alignment explanation
Indices: 47299--47347 Score: 80
Period size: 3 Copynumber: 16.0 Consensus size: 3
47289 ATAAAGCATA
*
47299 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AGT AATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
47345 AAT
1 AAT
47348 TTATTTGATA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 40 0.93
4 3 0.07
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:47379 original size:17 final size:16
Alignment explanation
Indices: 47357--47412 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 16
47347 TTTATTTGAT
47357 AATTTATATATATTATA
1 AATTTATATATA-TATA
*
47374 AATTTATATTTATAT-
1 AATTTATATATATATA
*
47389 AA-TTATAAATAATATA
1 AATTTATATAT-ATATA
47405 TAATTTAT
1 -AATTTAT
47413 TAATTTTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
14 6 0.19
15 6 0.19
16 3 0.09
17 13 0.41
18 4 0.12
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
AATTTATATATATATA
Found at i:47384 original size:31 final size:32
Alignment explanation
Indices: 47343--47412 Score: 83
Period size: 31 Copynumber: 2.3 Consensus size: 32
47333 ATAGTAATTA
* * * *
47343 ATAATTTAT-TTGATA-ATTTATATATATTAT
1 ATAATTTATATTTATATAATTATAAATAATAT
47373 A-AATTTATATTTATATAATTATAAATAATAT
1 ATAATTTATATTTATATAATTATAAATAATAT
47404 ATAATTTAT
1 ATAATTTAT
47413 TAATTTTTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
29 7 0.21
30 6 0.18
31 13 0.39
32 7 0.21
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (32 bp):
ATAATTTATATTTATATAATTATAAATAATAT
Found at i:47404 original size:23 final size:23
Alignment explanation
Indices: 47358--47405 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
47348 TTATTTGATA
*
47358 ATTTATATATATTATAAATTTAT
1 ATTTATATATATTATAAATATAT
47381 ATTTATATA-ATTATAAATAATAT
1 ATTTATATATATTATAAAT-ATAT
47404 AT
1 AT
47406 AATTTATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.39
23 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTTATATATATTATAAATATAT
Found at i:47406 original size:25 final size:23
Alignment explanation
Indices: 47350--47417 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 23
47340 TTAATAATTT
47350 ATTTGATAATTTATATATATTATAA
1 ATTT-ATAATTTATATA-ATTATAA
47375 ATTTAT-ATTTATATAATTATAA
1 ATTTATAATTTATATAATTATAA
47397 ATAATATATAATTTAT-TAATT
1 AT--T-TATAATTTATATAATT
47418 TTTATTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
22 9 0.23
23 9 0.23
24 3 0.08
25 12 0.31
26 6 0.15
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (23 bp):
ATTTATAATTTATATAATTATAA
Found at i:47977 original size:25 final size:26
Alignment explanation
Indices: 47949--48009 Score: 67
Period size: 25 Copynumber: 2.4 Consensus size: 26
47939 TATTAACTTG
47949 ACTATAATTTATT-ATAATAATTAAT
1 ACTATAATTTATTAATAATAATTAAT
*
47974 ACTA-AA-TTATTAAATTATAATTAAT
1 ACTATAATTTATT-AATAATAATTAAT
47999 A-TACTAATTTA
1 ACTA-TAATTTA
48010 AATAACTAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
23 5 0.17
24 4 0.13
25 16 0.53
26 2 0.07
27 3 0.10
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (26 bp):
ACTATAATTTATTAATAATAATTAAT
Found at i:48180 original size:19 final size:20
Alignment explanation
Indices: 48158--48196 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
48148 AAAAAGTAAC
* *
48158 AATTAACTAATTAT-ATTAT
1 AATTAAATAAATATAATTAT
48177 AATTAAATAAATATAATTAT
1 AATTAAATAAATATAATTAT
48197 TTATTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (20 bp):
AATTAAATAAATATAATTAT
Found at i:48899 original size:18 final size:18
Alignment explanation
Indices: 48876--48931 Score: 55
Period size: 19 Copynumber: 3.1 Consensus size: 18
48866 ATTAAATAAA
48876 TATTTA-AATAATAACTAT
1 TATTTACAATAATAA-TAT
*
48894 TATTTATAA-ATATAATAT
1 TATTTACAATA-ATAATAT
48912 TAATTTACAATAATAA-AT
1 T-ATTTACAATAATAATAT
48930 TA
1 TA
48932 CTAATAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
17 1 0.03
18 14 0.42
19 17 0.52
20 1 0.03
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.45
Consensus pattern (18 bp):
TATTTACAATAATAATAT
Found at i:48917 original size:19 final size:20
Alignment explanation
Indices: 48880--48927 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
48870 AATAAATATT
48880 TAAATAATAACTATTATTTA
1 TAAATAATAACTATTATTTA
48900 TAAAT-ATAA-TATTAATTTA
1 TAAATAATAACTATT-ATTTA
*
48919 -CAATAATAA
1 TAAATAATAA
48928 ATTACTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 7 0.28
19 13 0.52
20 5 0.20
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
TAAATAATAACTATTATTTA
Found at i:48944 original size:19 final size:19
Alignment explanation
Indices: 48922--48965 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
48912 TAATTTACAA
48922 TAATAAAT-TACTAATAAAT
1 TAATAAATATACT-ATAAAT
**
48941 TAATATTTATACTATAAAT
1 TAATAAATATACTATAAAT
48960 TAATAA
1 TAATAA
48966 CAATAATTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TAATAAATATACTATAAAT
Found at i:49728 original size:24 final size:25
Alignment explanation
Indices: 49694--49743 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
49684 AAATTATGAC
* *
49694 AATTTATAATTA-ATATTTATTATA
1 AATTTAAAATTAGATATTTATAATA
*
49718 AATTTAAAATTAGTTATTTATAATA
1 AATTTAAAATTAGATATTTATAATA
49743 A
1 A
49744 TTATATTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (25 bp):
AATTTAAAATTAGATATTTATAATA
Found at i:49804 original size:16 final size:18
Alignment explanation
Indices: 49785--49830 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 18
49775 TTAATTATTA
49785 AATATAATTAACAA-G-T
1 AATATAATTAACAATGTT
*
49801 AATATAAATAA-AATGTT
1 AATATAATTAACAATGTT
49818 AATA-AATTAACAA
1 AATATAATTAACAA
49831 ATATTAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 2 0.08
16 16 0.64
17 7 0.28
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (18 bp):
AATATAATTAACAATGTT
Found at i:49828 original size:32 final size:29
Alignment explanation
Indices: 49780--49858 Score: 81
Period size: 32 Copynumber: 2.6 Consensus size: 29
49770 CAATCTTAAT
* *
49780 TATTAAATATAATTAACAAGTAATATAAATAAA
1 TATTTAATA-AATTAACAAAT-AT-TAAA-AAA
49813 -ATGTTAATAAATTAACAAATATTAAAAAA
1 TAT-TTAATAAATTAACAAATATTAAAAAA
49842 TATTTAAT-AATTAACAA
1 TATTTAATAAATTAACAA
49859 CTTAATTATC
Statistics
Matches: 42, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
28 9 0.21
29 8 0.19
30 6 0.14
31 2 0.05
32 12 0.29
33 5 0.12
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (29 bp):
TATTTAATAAATTAACAAATATTAAAAAA
Found at i:49841 original size:28 final size:29
Alignment explanation
Indices: 49801--49858 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 29
49791 ATTAACAAGT
49801 AATATAAATAAAAT-GTTAATAAATTAACA
1 AATATAAATAAAATAGTTAAT-AATTAACA
* *
49830 AATATTAA-AAAATATTTAATAATTAACA
1 AATATAAATAAAATAGTTAATAATTAACA
49858 A
1 A
49859 CTTAATTATC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 14 0.54
29 12 0.46
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (29 bp):
AATATAAATAAAATAGTTAATAATTAACA
Found at i:49981 original size:14 final size:15
Alignment explanation
Indices: 49964--49993 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
49954 TACATTAGTC
49964 ATTATT-AAATATAA
1 ATTATTAAAATATAA
49978 ATTATTAAAATATAA
1 ATTATTAAAATATAA
49993 A
1 A
49994 CTAAAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATTAAAATATAA
Found at i:50078 original size:9 final size:9
Alignment explanation
Indices: 50066--50115 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
50056 TTAAATAATA
50066 ATAATATTT
1 ATAATATTT
50075 ATAATATTT
1 ATAATATTT
* *
50084 AAAATAATT
1 ATAATATTT
* *
50093 ATAATCTCT
1 ATAATATTT
50102 -TAATATTT
1 ATAATATTT
50110 ATAATA
1 ATAATA
50116 AGATTCTAAT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
8 6 0.19
9 26 0.81
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (9 bp):
ATAATATTT
Found at i:50086 original size:26 final size:25
Alignment explanation
Indices: 50056--50116 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
50046 AAATAGATAA
*
50056 TTAAATAATAATAATATTTATAATAT
1 TTAAATAATAATAATATCT-TAATAT
* *
50082 TTAAAATAATTATAATCTCTTAATAT
1 TT-AAATAATAATAATATCTTAATAT
50108 TTATAATAA
1 TTA-AATAA
50117 GATTCTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.03
26 15 0.50
27 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (25 bp):
TTAAATAATAATAATATCTTAATAT
Found at i:50421 original size:6 final size:6
Alignment explanation
Indices: 50392--50508 Score: 66
Period size: 6 Copynumber: 19.0 Consensus size: 6
50382 TATAAATTGG
*
50392 ATATTA ATACTTA ATTATTA ATATTT ATA-TA ATATT- ATAATTA ATATTA
1 ATATTA ATA-TTA A-TATTA ATATTA ATATTA ATATTA AT-ATTA ATATTA
* * * *
50441 TTA-TA TATATTGA ATATTAA ATATTTA ATATT- -TAATA ATATTT ATAATA
1 ATATTA -ATATT-A ATATT-A ATA-TTA ATATTA ATATTA ATATTA ATATTA
50490 ATTATT- ATAGTTA ATATTA
1 A-TATTA ATA-TTA ATATTA
50509 TTCAAAATAA
Statistics
Matches: 86, Mismatches: 11, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
4 3 0.03
5 10 0.12
6 38 0.44
7 30 0.35
8 5 0.06
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:50440 original size:62 final size:67
Alignment explanation
Indices: 50361--50508 Score: 168
Period size: 62 Copynumber: 2.3 Consensus size: 67
50351 TATGAAATCT
* * *
50361 TAATATTAT-TTATTATTAATT-TATAAATTGGATATT-AATACTT-A-A-TTATTAATATTTAT
1 TAATATTATATTAATATTAATTATATAAATTGAATATTAAATACTTAATATTTAATAATATTTAT
50420 -A
66 AA
* *
50421 TAATATTATAATTAATATT-ATTATATATATTGAATATTAAATATTTAATATTTAATAATATTTA
1 TAATATTAT-ATTAATATTAATTATATAAATTGAATATTAAATACTTAATATTTAATAATATTTA
50485 TAA
65 TAA
50488 TAATTATTATAGTTAATATTA
1 TAA-TATTATA-TTAATATTA
50509 TTCAAAATAA
Statistics
Matches: 72, Mismatches: 5, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
60 9 0.12
61 3 0.04
62 20 0.28
63 6 0.08
64 1 0.01
65 1 0.01
66 13 0.18
67 5 0.07
68 14 0.19
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.52
Consensus pattern (67 bp):
TAATATTATATTAATATTAATTATATAAATTGAATATTAAATACTTAATATTTAATAATATTTAT
AA
Found at i:50506 original size:49 final size:53
Alignment explanation
Indices: 50392--50666 Score: 141
Period size: 55 Copynumber: 5.2 Consensus size: 53
50382 TATAAATTGG
*
50392 ATATTAATACTTAATTATTAATATTTATATAATATTATAATTAATATTATTATAT
1 ATATTAATA-TTAAATATTAATATTTATATAATATTATAATTAATA-TATTATAT
50447 ATATTGAATATTAAATATTTAATATTTA-ATAATATTTATAA-TAAT-TATTATAGT
1 ATATT-AATATTAAATA-TTAATATTTATATAATA-TTATAATTAATATATTATA-T
* * * * * *
50501 -TAATATTATTCAAAATAATTAA-A-TTATATAATTATTATAAATATTTTATTAGTTT
1 ATATTAATATT--AAAT-ATTAATATTTATATAA-TATTATAATTAATATATTA-TAT
* * *
50556 A-ATTAATATT--ATATTATTATTT-TACTAATTACTA-AATCT-ATACAATTAT-T
1 ATATTAATATTAAATATTAATATTTATA-TAA-TATTATAAT-TAATA-TATTATAT
* * * * *
50606 A-ATTAATATTATAT-TTATTATATATTATAATTATATATAATAAATATATAAT-T
1 ATATTAATATTAAATATTAATATTTA-TATAA-TAT-TATAATTAATATATTATAT
50659 ATATTAAT
1 ATATTAAT
50667 TATAATATTT
Statistics
Matches: 176, Mismatches: 18, Indels: 53
0.71 0.07 0.21
Matches are distributed among these distances:
50 15 0.09
51 17 0.10
52 31 0.18
53 31 0.18
54 26 0.15
55 35 0.20
56 21 0.12
ACGTcount: A:0.46, C:0.02, G:0.01, T:0.51
Consensus pattern (53 bp):
ATATTAATATTAAATATTAATATTTATATAATATTATAATTAATATATTATAT
Found at i:50507 original size:56 final size:55
Alignment explanation
Indices: 50392--50497 Score: 146
Period size: 56 Copynumber: 1.9 Consensus size: 55
50382 TATAAATTGG
*
50392 ATATTAATACTTAATTATTAATATTTATATAATATTATAATTAATATTATTATAT
1 ATATTAATACTTAAATATTAATATTTATATAATATTATAATTAATATTATTATAT
50447 ATATTGAATA-TTAAATATTTAATATTTA-ATAATATTTATAA-TAATTATTAT
1 ATATT-AATACTTAAATA-TTAATATTTATATAATA-TTATAATTAA-TATTAT
50498 AGTTAATATT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
55 20 0.43
56 26 0.57
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.52
Consensus pattern (55 bp):
ATATTAATACTTAAATATTAATATTTATATAATATTATAATTAATATTATTATAT
Found at i:50632 original size:16 final size:16
Alignment explanation
Indices: 50602--50644 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
50592 TCTATACAAT
*
50602 TATTAATTA-ATATTA
1 TATTTATTATATATTA
50617 TATTTATTATATATTA
1 TATTTATTATATATTA
*
50633 TAATTA-TATATA
1 TATTTATTATATA
50645 ATAAATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTTATTATATATTA
Found at i:50632 original size:22 final size:22
Alignment explanation
Indices: 50613--50675 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
50603 ATTAATTAAT
50613 ATTATATTTATTATATATTATA
1 ATTATATTTATTATATATTATA
* * *
50635 ATTATATATAATAAATA-TATA
1 ATTATATTTATTATATATTATA
*
50656 ATTATATTAATTATAATATT
1 ATTATATTTATTAT-ATATT
50676 TATAGTAAGT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 14 0.44
22 17 0.53
23 1 0.03
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
ATTATATTTATTATATATTATA
Found at i:50640 original size:13 final size:13
Alignment explanation
Indices: 50600--50661 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 13
50590 AATCTATACA
50600 ATTATTAATTA-AT
1 ATTA-TAATTATAT
50613 ATTATATTTATTATAT
1 ATTATA---ATTATAT
50629 ATTATAATTATAT
1 ATTATAATTATAT
* *
50642 ATAATAAATATAT
1 ATTATAATTATAT
50655 AATTATA
1 -ATTATA
50662 TTAATTATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 9
0.77 0.06 0.17
Matches are distributed among these distances:
12 2 0.05
13 22 0.54
14 5 0.12
15 4 0.10
16 8 0.20
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATTATAATTATAT
Found at i:50679 original size:26 final size:27
Alignment explanation
Indices: 50602--50679 Score: 74
Period size: 26 Copynumber: 2.9 Consensus size: 27
50592 TCTATACAAT
*
50602 TATTA-ATTAA-TATTATATTTATTATA
1 TATTATATTAATTATAATATTTA-TATA
**
50628 TATTATAATT-ATATATAATAAATATATA
1 TATTAT-ATTAAT-TATAATATTTATATA
50656 -ATTATATTAATTATAATATTTATA
1 TATTATATTAATTATAATATTTATA
50680 GTAAGTTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
26 19 0.45
27 8 0.19
28 7 0.17
29 8 0.19
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTATATTAATTATAATATTTATATA
Found at i:51656 original size:181 final size:183
Alignment explanation
Indices: 51269--52683 Score: 815
Period size: 180 Copynumber: 7.9 Consensus size: 183
51259 TTGAACATTT
* * * * * **
51269 AAATATAATCAGTAAAAGATTTAAAAAGTAAATCTGCTTACCAAA-CAATTTCAAATA-TTTTGA
1 AAAT-TAATAAGTAAGAGATTTAAAAAATAAATCTGATTACCAAATCAAGTTCAAATAGTTAAGA
* * * * * * * *
51332 CTATTTGAATAATTATCTATTCCAAATCATTAT-AACTTTTTATTTTGTCATCAAATAATT-TGT
65 CTATATAAATAATTATCTATTTCAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGT-T
* ** ** * * **
51395 TCTA-TTTATACTATTTTATTTGAAATAAAATAAT-GTAAATTTAATAATATTCCAA
129 TC-AGTTTATACAAGCTTATTCAAAATAAAATAATACT-AATTTATTAATATTTAAA
* ** * * * * * * *
51450 AACTTAATAACCAGAAAAATTAAAAAAATAAATCTAATTACCAAACCGA-TTCAAATAGTTAAAA
1 AAATTAATAAGTA-AGAGATTTAAAAAATAAATCTGATTACCAAATCAAGTTCAAATAGTTAAGA
* * *
51514 CTATATAAATGATTATCTATTTCAAATTGTTATGA-CATTTTCTTTTGTCATAAAACAATTGTTT
65 CTATATAAATAATTATCTATTTCAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGTTT
* * * * *
51578 -TGTTTGTACAAGCTTATTCATATTCAAATAATACTAATTTCA-TAATATTTAAA
130 CAGTTTATACAAGCTTATTCAAAATAAAATAATACTAATTT-ATTAATATTTAAA
* * * * *
51631 AAATTAATAAGTAAGAGATTTAAAAAATAAAT-TTATCTATCGAATC-ATTTCAAATGGTTAAGA
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGAT-TACCAAATCAAGTTCAAATAGTTAAGA
* * * * *
51694 TTAT-TAGAATAATTATATACTTCAAATCGTTTTGACCA-TTT-TTTAGTCATAAAACAATTGTT
65 CTATATA-AATAATTATCTATTTCAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGTT
* * * * *
51756 TCAATTCATACAAGCTTATTCAAAATAAATTAATACTAATTTATTAACATTTAGA
129 TCAGTTTATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTAAA
* * * **
51811 AAATTAATAAGAAAGAGATTTAAAAAA-AATATATG-TTCACCGAA-CAAGTTCAAATAGTTATT
1 AAATTAATAAGTAAGAGATTTAAAAAATAA-ATCTGATT-ACCAAATCAAGTTCAAATAGTTAAG
* * * * * * * *
51873 ATTATATGAATAATTGTCTATTTAAAAAT-GTTATAACC-TTTTAATTTGTCACAAAATAATTGT
64 ACTATATAAATAATTATCTATTT-CAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGT
* * ** **
51936 TTCAGTTAATACAAGCTTAGAT-GGAATAAAATAATACTAATTTATTAATATTTTCA
128 TTCAGTTTATACAAGCTTA-TTCAAAATAAAATAATACTAATTTATTAATATTTAAA
* * * * * *
51992 AAATTAATAAG--A-A-ATTTAAAAAATAAATCTGTTTATCAAATCAA-TTAAAATAATTATGGC
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGATTACCAAATCAAGTTCAAATAGTTAAGAC
* * * * * * * *
52052 CATTTGAATAGTTATCTATTTTAAATCATTATGACCTTTTTATTTTGTCATAATACAATTGTTT-
66 TATATAAATAATTATCTATTTCAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGTTTC
* * *
52116 -TTTTATCAGACAAGCTTATTCAAAATAAAATAATACTAATTGATTAATATTTCAA
131 AGTTTAT---ACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTAAA
* * * * * * *
52171 AAA-TAATAGGTAACAGATTTAAATAATAAATCTGTTTACC-AATCTAA-TTTAAATAATTATGA
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGATTACCAAATC-AAGTTCAAATAGTTAAGA
* * * * * * * *
52233 CTATTTGAACAATTATCAATATCAAATCATTA--A-AATTTTTGTTTTGTCATAAAACAATTGTT
65 CTATATAAATAATTATCTATTTCAAATCGTTATGACCA-TTTTATTTTGTCATAAAACAATTGTT
* * * * *** * *
52295 TCTA-ATCATAGAAGCCTATTC-GGTTAAAAATAATACTAATTTAATAATATTTCAA
129 TC-AGTTTATACAAGCTTATTCAAAAT-AAAATAATACTAATTTATTAATATTTAAA
* * * * * * * *
52350 AAA-T--TAA-TAAGAGATTTAAAAATTAAATATGTTTGCTAAA-CCAGTTCAAATAGTAAAAAC
1 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGATTACCAAATCAAGTTCAAATAGTTAAGAC
* * * * * * *
52410 AAT-TAGAATAATTATCTATTTCAAATAGTTCA-AACC-TTTTGTTTAGTCATAAAATATTTGTT
66 TATATA-AATAATTATCTATTTCAAATCGTT-ATGACCATTTTATTTTGTCATAAAACAATTGTT
*** * * * * **
52472 TCATGTCTTAT--AAGCTTATTTGGAATAAAATAATCCAAATTTATGAACATTTGGA
129 TCA-GT-TTATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTAAA
* * * * * * *
52527 AAATTAATAAGCAAAAGATTTGAAAAAATAAATTTGTTTACCAAA-CAAGTTTAAAAAGTTATGA
1 AAATTAATAAGTAAGAGATTT-AAAAAATAAATCTGATTACCAAATCAAGTTCAAATAGTTAAGA
** * * * * *
52591 CTAT-TTGATCAATTAT-TTTTATAAAATCATTATGACC-TTTTGTTTTGACATAAAACAATTGT
65 CTATATAAAT-AATTATCTATT-TCAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGT
* * * *
52653 TTCAATTCATAAAAGCTTATCCAAAATAAAA
128 TTCAGTTTATACAAGCTTATTCAAAATAAAA
52684 AGAATTTAAT
Statistics
Matches: 962, Mismatches: 210, Indels: 123
0.74 0.16 0.09
Matches are distributed among these distances:
175 2 0.00
176 66 0.07
177 116 0.12
178 43 0.04
179 118 0.12
180 217 0.23
181 182 0.19
182 216 0.22
183 2 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (183 bp):
AAATTAATAAGTAAGAGATTTAAAAAATAAATCTGATTACCAAATCAAGTTCAAATAGTTAAGAC
TATATAAATAATTATCTATTTCAAATCGTTATGACCATTTTATTTTGTCATAAAACAATTGTTTC
AGTTTATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTAAA
Found at i:52345 original size:358 final size:354
Alignment explanation
Indices: 51285--53748 Score: 1706
Period size: 358 Copynumber: 7.0 Consensus size: 354
51275 AATCAGTAAA
* * * * * * * * * *
51285 AGATTTAAAAAGTAAATCTGCTTACCAAACAATTTCAAAT-ATTTTGACTATTTGAATAATTATC
1 AGATTTAAAAAATAAATTTGTTTATCAAACCAGTTAAAATAATTATAACTATTTGAACAATTATC
* * * * * * * * **
51349 TATTCCAAATCATTATAACTTTTTATTTTGTCATCAAATAATT-TGTTCTATTTATACTATTTTA
66 TATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGT-TTTTATTCATACAAGCTTA
** * * * * * * *
51413 TTTGAAATAAAATAAT-GTAAATTTAATAATATTCCAAAACTTAATAACCAGAAAAATTAAAAAA
130 TTCAAAATAAAATAATACT-AA-TTATTAATATTTCAAAAATTAAT-A--AGTAAGATTTAAAAA
** ** * ** * * ** *
51477 ATAAATCTAATTACCAAACCGATTCAAATAGTTAAAACTATATAAATGATTATCTATTTCAAATT
190 ATAAATCTGTTTACCAAACTAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATC
* * * ** ** **
51542 GTTATGACATTTTCTTTTGTCATAAAACAATTGTTT-TGTTTGTACAAGCTTATTC-ATATTCAA
255 ATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAATCATACAAGCTTATTCGA-A-AAAA
*
51605 ATAATACTAATTTCA-TAATATTTAAAAAATTAATAAGTAAG
318 ATAATACTAATTT-ATTAATATTTCAAAAA-T--TAA-TAAG
* * * * * * ** * * *
51646 AGATTTAAAAAATAAATTTATCTATCGAATCATTTCAAATGGTTA-AGATTATTAGAATAATTAT
1 AGATTTAAAAAATAAATTTGTTTATCAAACCAGTTAAAATAATTATA-ACTATTTGAACAATTAT
* * * * * * * **
51710 ATACTTCAAATCGTTTTGACCATTT-TTTAGTCATAAAACAATTGTTTCAATTCATACAAGCTTA
65 CTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTA
* * *
51774 TTCAAAATAAATTAATACTAATTTATTAACATTT-AGAAAATTAATAAGAAAGAGATTTAAAAAA
130 TTCAAAATAAAATAATACTAA-TTATTAATATTTCA-AAAATTAATAAG-TA-AGATTTAAAAAA
* * * * * * * * * *
51838 -AATATATGTTCACCGAAC-AAGTTCAAATAGTTATTATTATATGAATAATTGTCTATTTAAAAA
191 TAA-ATCTGTTTACCAAACTAA-TTCAAATAATTATGACTATTTGAACAATTATCTATTT-CAAA
* * ** * * * * * * *
51901 T-GTTATAACCTTTTAATTTGTCACAAAATAATTGTTTC-AGTTAATACAAGCTTAGATGGAATA
253 TCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-ATCATACAAGCTTA-TTCGAAAA
51964 AAATAATACTAATTTATTAATATTTTC-AAAATTAATAAG
316 AAATAATACTAATTTATTAATA-TTTCAAAAATTAATAAG
* * * * ** * * *
52003 AAATTTAAAAAATAAATCTGTTTATCAAATCAATTAAAATAATTATGGCCATTTGAATAGTTATC
1 AGATTTAAAAAATAAATTTGTTTATCAAACCAGTTAAAATAATTATAACTATTTGAACAATTATC
* * * * * *
52068 TATTTTAAATCATTATGACCTTTTTATTTTGTCATAATACAATTGTTTTTTTATCAGACAAGCTT
66 TATTTCAAATCATTATAACC-TTTTGTTTTGTCATAAAACAATTGTTTTTAT-TCATACAAGCTT
* *
52133 ATTCAAAATAAAATAATACTAATTGATTAATATTTCAAAAA-TAATAGGTAACAGATTTAAATAA
129 ATTCAAAATAAAATAATACTAATT-ATTAATATTTCAAAAATTAATAAGT-A-AGATTTAAAAAA
* * * *
52197 TAAATCTGTTTACCAATCTAATTTAAATAATTATGACTATTTGAACAATTATCAATATCAAATCA
191 TAAATCTGTTTACCAAACTAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCA
* ** * * **
52262 TTA-AAATTTTTGTTTTGTCATAAAACAATTGTTTCTAATCATAGAAGCCTATTCGGTTAAAAAT
256 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAATCATACAAGCTTATTC-GAAAAAAAT
*
52326 AATACTAATTTAATAATATTTCAAAAATTAATAAG
320 AATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * * * * *
52361 AGATTTAAAAATTAAATATGTTT-GCTAAACCAGTTCAAATAGTAAAAACAATTAGAATAATTAT
1 AGATTTAAAAAATAAATTTGTTTATC-AAACCAGTTAAAATAATTATAACTATTTGAACAATTAT
* * * * * *
52425 CTATTTCAAAT-AGTTCA-AACCTTTTGTTTAGTCATAAAATATTTG-TTTCATGTCTTATAAGC
65 CTATTTCAAATCA-TT-ATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTAT-TCATACAAGC
*** * * * * ** *
52487 TTATTTGGAATAAAATAATCCAAATTTATGAACATTTGGAAAATTAATAAGCAAAAGATTTGAAA
127 TTATTCAAAATAAAATAATACTAA-TTATTAATATTTCAAAAATTAATAAG--TAAGATTT-AAA
* * * * *
52552 AAATAAATTTGTTTACCAAAC-AAGTTTAAA-AAGTTATGACTATTTGATCAATTAT-TTTTATA
188 AAATAAATCTGTTTACCAAACTAA-TTCAAATAA-TTATGACTATTTGAACAATTATCTATT-TC
* *
52614 AAATCATTATGACCTTTTGTTTTGACATAAAACAATTGTTTC-AATTCATAAAAGCTTA-TC---
250 AAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAA-TCATACAAGCTTATTCGAA
* * **
52674 CAAAAT-A-A--AA---A--GA-ATTT----AA-TAAGCAG
314 AAAAATAATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * * *
52700 -GAGTTTAAAAAAATAAATTTGTTTATCGAGCAAATTTAGATAATTATAACTATTTGAACAATTG
1 AGA-TTT-AAAAAATAAATTTGTTTATCAAACCAGTTAAAATAATTATAACTATTTGAACAATTA
* * * *
52764 TCTATTTAAAATCATTATGA-----TGTTTTGTCATAAAATAATTG-TTTCAGTTCATACAAGCT
64 TCTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTA-TTCATACAAGCT
* * *
52823 TATTCAAAATAAAATAATTCTAATTTATTAATATTCCAAAAATTAATAAGT--GATTTAAAAAGT
128 TATTCAAAATAAAATAATACTAA-TTATTAATATTTCAAAAATTAATAAGTAAGATTTAAAAAAT
* * * * * * * *
52886 GAATCTATTTGCGAAATTAGTTCAAATAATTATGA-TCATTTCAACAATTATCTATTTCAAATCG
192 AAATCTGTTTACCAAACTAATTCAAATAATTATGACT-ATTTGAACAATTATCTATTTCAAATCA
* * * * * * *
52950 TTATCACCTTTTGTTTGGTCATATAACAATTGTTTTTTATCATACATGATTATTCGAAATAAAAT
256 TTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAATCATACAAGCTTATTCGAAA-AAAAT
* *
53015 AATAATAATTTATTAATCTTTCAAAAATTAATAAG
320 AATACTAATTTATTAATATTTCAAAAATTAATAAG
* * * * * *
53050 AGATTTAAAAAATGAATTTGTTTA-CTGAACCAGTTCAAATAGTTATGACTATTTGAACAATTCT
1 AGATTTAAAAAATAAATTTGTTTATC-AAACCAGTTAAAATAATTATAACTATTTGAACAATTAT
* * * * *
53114 ATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTCTATTCATACAAGCTTA
65 CTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTA
* * * *
53179 TTCAAAATAAAACAATACTAATCTAATAATATTCCAAAAATTAATAACTAAGGGATTTAAAAAAT
130 TTCAAAATAAAATAATACTAAT-TATTAATATTTCAAAAATTAATAAGTAA--GATTTAAAAAAT
* * * * * * * *
53244 AAATTTGTTTGCCGAACCAATTCAAATAGTTAAGACTATATGAACAATTATCTATTTCAAATCGT
192 AAATCTGTTTACCAAACTAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCAT
* *
53309 TATGACCTTTTGTCTTGTCATAAAACAA-T-TTTCTCAATTCATACTAGCTTATTCGAAATAAAA
257 TATGACCTTTTGTTTTGTCATAAAACAATTGTTTCT-AA-TCATACAAGCTTATTCGAAA-AAAA
*
53372 TAA-AATGAATTTATTAATATTTCAAAAAATAATAAGTAAG
319 TAATACT-AATTTATTAATATTTC-AAAAAT--TAA-TAAG
* * *
53412 AGATTTAAAAAATAATTTTG-TTACCTAACCAGTTCAAAA-AATTAT-ACTATTTGAACAATTAT
1 AGATTTAAAAAATAAATTTGTTTATCAAACCAGTT-AAAATAATTATAACTATTTGAACAATTAT
* * * * * * * *
53474 ATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCATATAAGTTTA
65 CTATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTA
* * *
53539 TTC-AAATAAAGTAATACTAATCTATTAATATTTCAAAAATTAATAAGT--GATTTAGACAATAA
130 TTCAAAATAAAATAATACTAAT-TATTAATATTTCAAAAATTAATAAGTAAGATTTAAAAAATAA
* * * * * * *
53601 ATCTATGTATCAAACTAGTTCAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCATTA
194 ATCTGTTTACCAAACTAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTA
* ** * * **
53666 TGACTTTTTGTTTTGTTGTAAAACAATTGTTTCTATTCATACAAGCTTATTTGCATTAAAATAAT
259 TGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAATCATACAAGCTTATTCG-AAAAAAATAAT
53731 ACTAATTTATTAATATTT
323 ACTAATTTATTAATATTT
53749 TGACAATTAG
Statistics
Matches: 1663, Mismatches: 340, Indels: 206
0.75 0.15 0.09
Matches are distributed among these distances:
329 1 0.00
330 87 0.05
331 14 0.01
335 78 0.05
336 2 0.00
337 1 0.00
338 2 0.00
339 11 0.01
340 55 0.03
341 2 0.00
342 1 0.00
344 5 0.00
345 4 0.00
347 1 0.00
348 1 0.00
349 64 0.04
350 10 0.01
351 2 0.00
352 1 0.00
353 2 0.00
354 80 0.05
355 126 0.08
356 51 0.03
357 123 0.07
358 334 0.20
359 176 0.11
360 207 0.12
361 154 0.09
362 67 0.04
363 1 0.00
ACGTcount: A:0.42, C:0.11, G:0.08, T:0.39
Consensus pattern (354 bp):
AGATTTAAAAAATAAATTTGTTTATCAAACCAGTTAAAATAATTATAACTATTTGAACAATTATC
TATTTCAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTTTATTCATACAAGCTTAT
TCAAAATAAAATAATACTAATTATTAATATTTCAAAAATTAATAAGTAAGATTTAAAAAATAAAT
CTGTTTACCAAACTAATTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATCATTATG
ACCTTTTGTTTTGTCATAAAACAATTGTTTCTAATCATACAAGCTTATTCGAAAAAAATAATACT
AATTTATTAATATTTCAAAAATTAATAAG
Found at i:52683 original size:182 final size:180
Alignment explanation
Indices: 51282--52683 Score: 814
Period size: 182 Copynumber: 7.8 Consensus size: 180
51272 TATAATCAGT
* * * * *
51282 AAAAGATTTAAAAAGTAAATCTGCTTACCAAACAA-TTTCAAATA-TTTTGACTATTTGAATAAT
1 AAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTT-AAAAAGTTATGACTATTTGAATAAT
* ** * * * * * * *
51345 TATCTATT-CCAAATCATTATAACTTTTTATTTTGTCATCAAATAATT-TGTTCTATTTATACTA
65 TATCTTTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGT-TTCAATTCATACAA
** ** * * *
51408 TTTTATTTGAAATAAAATAAT-GTAAATTTAATAATATTCCAAAACTTAATAACCAG
129 GCTTATTCAAAATAAAATAATACT-AATTTATTAATATTTCAAAA-TTAAT-A--AG
* * ** * * * ** * * *
51464 AAAA-ATTAAAAAAATAAATCTAATTACCAAAC-CGATTCAAATAGTTAAAACTATATAAATGAT
1 AAAAGATTTAAAAAATAAATATGTTTACCAAACAAG-TTTAAAAAGTTATGACTATTTGAATAAT
* * ** * * * ** **
51527 TATCTATT-TCAAATTGTTATGACATTTTCTTTTGTCATAAAACAATTGTTT-TGTTTGTACAAG
65 TATCTTTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAG
* * * *
51590 CTTATTCATATTCAAATAATACTAATTTCA-TAATATTTAAAAAATTAATAAG
130 CTTATTCAAAATAAAATAATACTAATTT-ATTAATATTT-CAAAATTAATAAG
* * * * * * ** * * *
51642 TAAGAGATTTAAAAAATAAATTTATCTATCGAATC-A-TTTCAAATGGTTAAGATTATTAGAATA
1 -AAAAGATTTAAAAAATAAATATGTTTA-CCAAACAAGTTT-AAAAAGTTATGACTATTTGAATA
* ** * * * * * *
51705 ATTATATACT-TCAAATCGTTTTGACCATTT-TTTAGTCATAAAACAATTGTTTCAATTCATACA
63 ATTATCTTTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACA
* * *
51768 AGCTTATTCAAAATAAATTAATACTAATTTATTAACATTTAGAAAATTAATAAG
128 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-CAAAATTAATAAG
* * * * * * *
51822 AAAGAGATTTAAAAAA-AATATATGTTCACCGAACAAGTTCAAATAGTTATTATTATATGAATAA
1 AAA-AGATTTAAAAAATAA-ATATGTTTACCAAACAAGTTTAAAAAGTTATGACTATTTGAATAA
* * ** * * * *
51886 TTGTCTATTTA-AAAAT-GTTATAACCTTTTAATTTGTCACAAAATAATTGTTTCAGTTAATACA
64 TTATCT-TTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACA
* **
51949 AGCTTAGAT-GGAATAAAATAATACTAATTTATTAATATTTTCAAAATTAATAAG
128 AGCTTA-TTCAAAATAAAATAATACTAATTTATTAATA-TTTCAAAATTAATAAG
* * * * * *
52003 --AA-ATTTAAAAAATAAATCTGTTTATCAAATCAA--TTAAAATAATTATGGCCATTTGAATAG
1 AAAAGATTTAAAAAATAAATATGTTTACCAAA-CAAGTTTAAAA-AGTTATGACTATTTGAATAA
* * * *** *
52063 TTATCTATTT-T-AAATCATTATGACCTTTTTATTTTGTCATAATACAATTGTTTTTTTATCAGA
64 TTATCT-TTTATAAAATCATTATAACC-TTTTGTTTTGTCATAAAACAATTGTTTCAAT-TCATA
* * *
52126 CAAGCTTATTCAAAATAAAATAATACTAATTGATTAATATTTCAAAAATAATAGG
126 CAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAG
* * * * *
52181 TAACAGATTTAAATAATAAATCTGTTTACCAATCTAA-TTTAAATAA-TTATGACTATTTGAACA
1 -AAAAGATTTAAAAAATAAATATGTTTACCAAAC-AAGTTTAAA-AAGTTATGACTATTTGAATA
** * ** *
52244 ATTATC-AATATCAAATCATTA-AAATTTTTGTTTTGTCATAAAACAATTGTTTCTAA-TCATAG
63 ATTATCTTTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTC-AATTCATAC
* *** *
52306 AAGCCTATTC-GGTTAAAAATAATACTAATTTAATAATATTTCAAAAATTAATAAG
127 AAGCTTATTCAAAAT-AAAATAATACTAATTTATTAATATTTC-AAAATTAATAAG
* * * * * * * ** * *
52361 ---AGATTTAAAAATTAAATATGTTTGCTAAACCAGTTCAAATAGTAAAAACAATTAGAATAATT
1 AAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTTAAAAAGTTATGACTATTTGAATAATT
* * * * * * *
52423 ATCTATT-TCAAAT-AGTTCA-AACCTTTTGTTTAGTCATAAAATATTTGTTTC-ATGTCTTATA
66 ATCTTTTATAAAATCA-TT-ATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAAT-TCATACA
*** * * * * *
52484 AGCTTATTTGGAATAAAATAATCCAAATTTATGAACATTTGGAAAATTAATAAG
128 AGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT-CAAAATTAATAAG
*
52538 CAAAAGATTTGAAAAAATAAATTTGTTTACCAAACAAGTTTAAAAAGTTATGACTATTTG-ATCA
1 -AAAAGATTT-AAAAAATAAATATGTTTACCAAACAAGTTTAAAAAGTTATGACTATTTGAAT-A
* * *
52602 ATTAT-TTTTATAAAATCATTATGACCTTTTGTTTTGACATAAAACAATTGTTTCAATTCATAAA
63 ATTATCTTTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACA
*
52666 AGCTTATCCAAAATAAAA
128 AGCTTATTCAAAATAAAA
52684 AGAATTTAAT
Statistics
Matches: 942, Mismatches: 217, Indels: 122
0.74 0.17 0.10
Matches are distributed among these distances:
175 4 0.00
176 62 0.07
177 124 0.13
178 50 0.05
179 109 0.12
180 198 0.21
181 164 0.17
182 220 0.23
183 10 0.01
184 1 0.00
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.39
Consensus pattern (180 bp):
AAAAGATTTAAAAAATAAATATGTTTACCAAACAAGTTTAAAAAGTTATGACTATTTGAATAATT
ATCTTTTATAAAATCATTATAACCTTTTGTTTTGTCATAAAACAATTGTTTCAATTCATACAAGC
TTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAATTAATAAG
Found at i:52849 original size:158 final size:155
Alignment explanation
Indices: 52530--52836 Score: 379
Period size: 158 Copynumber: 2.0 Consensus size: 155
52520 ATTTGGAAAA
* * *
52530 TTAATAAGCAAAAGATTTGAAAAAATAAATTTGTTTACCAAACAAGTTTAAAAAGTTATGACTAT
1 TTAATAAGCAAAAGATTTAAAAAAATAAATTTGTTTACCAAACAAATTTAAAAAGTTATAACTAT
* *
52595 TTGATCAATTATTTTTATAAAATCATTATGACCTTTTGTTTTGACATAAAACAATTGTTTCAATT
66 TTGAACAATTATTATTATAAAATCATTATGA----TTGTTTTGACATAAAACAATTGTTTCAATT
52660 CATAAAAGCTTATCCAAAATAAAAAGAAT
127 CATAAAAGCTTATCCAAAATAAAAAGAAT
** * * * *
52689 TTAATAAGCAGGAG-TTTAAAAAAATAAATTTGTTTATCGAGCAAATTTAGATAA-TTATAACTA
1 TTAATAAGCAAAAGATTTAAAAAAATAAATTTGTTTACCAAACAAATTTA-AAAAGTTATAACTA
* * * *
52752 TTTGAACAATTGTCTATT-TAAAATCATTATGA-TGTTTTGTCATAAAATAATTGTTTCAGTTCA
65 TTTGAACAATTAT-TATTATAAAATCATTATGATTGTTTTGACATAAAACAATTGTTTCAATTCA
* *
52815 TACAAGCTTATTCAAAATAAAA
129 TAAAAGCTTATCCAAAATAAAA
52837 TAATTCTAAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
153 48 0.37
158 63 0.49
159 18 0.14
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.37
Consensus pattern (155 bp):
TTAATAAGCAAAAGATTTAAAAAAATAAATTTGTTTACCAAACAAATTTAAAAAGTTATAACTAT
TTGAACAATTATTATTATAAAATCATTATGATTGTTTTGACATAAAACAATTGTTTCAATTCATA
AAAGCTTATCCAAAATAAAAAGAAT
Found at i:53305 original size:181 final size:177
Alignment explanation
Indices: 52689--53748 Score: 1025
Period size: 177 Copynumber: 6.0 Consensus size: 177
52679 TAAAAAGAAT
* * * * * *
52689 TTAATAAGCAGGAGTTTAAAAAAATAAATTTGTTTATCGAGCAAATTTAGATAATTATA-ACTAT
1 TTAATAAG-A-GA-TTT-AAAAAATAAATTTGTTTACCGAACCAGTTCAAATAATTA-AGACTAT
* * *
52753 TTGAACAATTGTCTATTTAAAATCATTATGA-----TGTTTTGTCATAAAATAATTGTTTC-AGT
61 TTGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTA-T
* *
52812 TCATACAAGCTTATTCAAAATAAAATAATTCTAATTTATTAATATTCCAAAAA
125 TCATACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * ** * *
52865 TTAATAAGTGATTTAAAAAGTGAATCTATTT-GCGAAATTAGTTCAAATAATTATGA-TCATTTC
1 TTAATAAGAGATTTAAAAAATAAATTTGTTTACCG-AACCAGTTCAAATAATTAAGACT-ATTTG
* * * * *
52928 AACAATTATCTATTTCAAATCGTTATCACCTTTTGTTTGGTCATATAACAATTGTTT-TTTATCA
64 AACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTAT-TCA
* * * * *
52992 TACATGATTATTCGAAATAAAATAATAATAATTTATTAATCTTTCAAAAA
128 TACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * *
53042 TTAATAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTCAAATAGTTATGACTATTTGAA
1 TTAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGTTCAAATAATTAAGACTATTTGAA
* * * * * *
53107 CAATTCTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTTCTATTCATAC
66 CAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATAC
* * * *
53172 AAGCTTATTCAAAATAAAACAATACTAATCTAATAATATTCCAAAAA
131 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * *
53219 TTAATAACTAAGGGATTTAAAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTAAGACTATA
1 -T--TAA-TAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGTTCAAATAATTAAGACTATT
* * *
53284 TGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATT
62 TGAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTT-TCTATT
* * *
53348 CATACTAGCTTATTCGAAATAAAATAA-AATGAATTTATTAATATTTCAAAAAA
126 CATACAAGCTTATTCAAAATAAAATAATACT-AATTTATTAATATTTC-AAAAA
* * * *
53401 TAATAAGTAAGAGATTTAAAAAATAATTTTG-TTACCTAACCAGTTCAAAAAATT-ATACTATTT
1 T--TAA-TAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGTTCAAATAATTAAGACTATTT
* * * * * * *
53464 GAACAATTATATATTTCAAATCATTATTACTTTTTGTTTTGTCATACAACAAATGTTTTTGTTCA
63 GAACAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCA
* * * *
53529 TATAAGTTTATTC-AAATAAAGTAATACTAATCTATTAATATTTCAAAAA
128 TACAAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
* * * * * * * * * * * *
53578 TTAATAAGTGATTTAGACAATAAATCTATGTATCAAACTAGTTCAAATAGTTATGACTATTTGAG
1 TTAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGTTCAAATAATTAAGACTATTTGAA
* * **
53643 CAATTATTTATTTCAAATCATTATGACTTTTTGTTTTGTTGTAAAACAATTGTTTCTATTCATAC
66 CAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATAC
*** *
53708 AAGCTTATTTGCATTAAAATAATACTAATTTATTAATATTT
131 AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTT
53749 TGACAATTAG
Statistics
Matches: 723, Mismatches: 136, Indels: 49
0.80 0.15 0.05
Matches are distributed among these distances:
171 3 0.00
172 54 0.07
173 3 0.00
174 20 0.03
175 20 0.03
176 82 0.11
177 240 0.33
178 30 0.04
179 71 0.10
180 27 0.04
181 168 0.23
182 5 0.01
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (177 bp):
TTAATAAGAGATTTAAAAAATAAATTTGTTTACCGAACCAGTTCAAATAATTAAGACTATTTGAA
CAATTATCTATTTCAAATCATTATGACCTTTTGTTTTGTCATAAAACAATTGTTTCTATTCATAC
AAGCTTATTCAAAATAAAATAATACTAATTTATTAATATTTCAAAAA
Found at i:53747 original size:536 final size:530
Alignment explanation
Indices: 52707--53716 Score: 1250
Period size: 536 Copynumber: 1.9 Consensus size: 530
52697 CAGGAGTTTA
* * * * * *
52707 AAAAAATAAATTTGTTTATCGAGCAAATTTAGATAATTATAACTATTTGAACAATTGTCTATTTA
1 AAAAAATAAATTTGTTTACCGAACAAATTCAAATAATTATAACTATATGAACAATTATCTATTTA
* * *
52772 AAATCATTATGATGTTTTGTCATAAAATAATTGTTTCAGTTCATACAAGCTTATTCAAAATAAAA
66 AAATCATTATGATGTCTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAA
* * * * * * *
52837 TAATTCTAATTTATTAATATTCCAAAAATTAATAAGTGATTTAAAAAGTGAATCTATTTGCGAAA
131 TAAATCGAATTTATTAATATTCAAAAAATTAATAAGAGATTTAAAAAATGAATCTATTTACCAAA
** * * *
52902 TTAGTTCAAATAATTATGATCATTTCAACAATTATCTATTTCAAATCGTTATCACCTTTTGTTTG
196 CCAGTTCAAAAAATTATGATCATTTCAACAATTATATATTTCAAATCATTATCACCTTTTGTTTG
* * * *
52967 GTCATATAACAATTGTTTTTTATCATACATGATTATTCGAAATAAAATAATAATAATTTATTAAT
261 GTCATACAACAAATGTTTTTTATCATACAAGATTATTCGAAATAAAATAATAATAATCTATTAAT
* * * *
53032 CTTTCAAAAATTAATAAGAGATTTAAAAAATGAATTTGTTTACTGAACCAGTTCAAATAGTTATG
326 ATTTCAAAAATTAATAAGAGATTTAAAAAATAAATTTGTATACTAAACCAGTTCAAATAGTTATG
*
53097 ACTATTTGAACAATTCTATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTT
391 ACTATTTGAACAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTT
53162 CTATTCATACAAGCTTATTCAAAATAAAACAATACTAATCTAATAATATTCCAAAAATTAATAAC
456 CTATTCATACAAGCTTATTCAAAATAAAACAATACTAATCTAATAATATTCCAAAAATTAATAAC
53227 TAAGGGATTT
521 TAAGGGATTT
* * *
53237 AAAAAATAAATTTGTTTGCCGAACCAATTCAAATAGTTA-AGACTATATGAACAATTATCTATTT
1 AAAAAATAAATTTGTTTACCGAACAAATTCAAATAATTATA-ACTATATGAACAATTATCTATTT
* * * *
53301 CAAATCGTTATGACCTTTTGTCTTGTCATAAAACAATT-TTCTCAATTCATACTAGCTTATTCGA
65 AAAATCATTATGA-----TGTCTTGTCATAAAACAATTGTT-TCAATTCATACAAGCTTATTCAA
53365 AATAAAATAAAAT-GAATTTATTAATATTTCAAAAAATAATAAGTAAGAGATTTAAAAAAT-AAT
124 AATAAAAT-AAATCGAATTTATTAATA-TTCAAAAAAT--TAA-TAAGAGATTTAAAAAATGAAT
* * *
53428 -TTTGTTACCTAACCAGTTCAAAAAATTAT-A-CTATTTGAACAATTATATATTTCAAATCATTA
184 CTAT-TTACCAAACCAGTTCAAAAAATTATGATC-ATTTCAACAATTATATATTTCAAATCATTA
* * * * * *
53490 TTACTTTTTGTTTTGTCATACAACAAATGTTTTTGT-TCATATAAGTTTATTC-AAATAAAGTAA
247 TCACCTTTTGTTTGGTCATACAACAAATGTTTTT-TATCATACAAGATTATTCGAAATAAAATAA
* * * *
53553 TACTAATCTATTAATATTTCAAAAATTAATAAGTGATTTAGACAATAAATCTATGTAT-C-AAAC
311 TAATAATCTATTAATATTTCAAAAATTAATAAGAGATTTAAAAAATAAAT-T-TGTATACTAAAC
* * * * * * *
53616 TAGTTCAAATAGTTATGACTATTTGAGCAATTATTTATTTCAAATCATTATGACTTTTTGTTTTG
374 CAGTTCAAATAGTTATGACTATTTGAACAATTATATACTTCAAATCATTATAACCTTTTGTTATG
** *
53681 TTGTAAAACAATTGTTTCTATTCATACAAGCTTATT
439 TCATAAAACAATTATTTCTATTCATACAAGCTTATT
53717 TGCATTAAAA
Statistics
Matches: 403, Mismatches: 60, Indels: 28
0.82 0.12 0.06
Matches are distributed among these distances:
529 1 0.00
530 64 0.16
534 2 0.00
535 58 0.14
536 159 0.39
537 74 0.18
538 30 0.07
539 15 0.04
ACGTcount: A:0.41, C:0.11, G:0.08, T:0.40
Consensus pattern (530 bp):
AAAAAATAAATTTGTTTACCGAACAAATTCAAATAATTATAACTATATGAACAATTATCTATTTA
AAATCATTATGATGTCTTGTCATAAAACAATTGTTTCAATTCATACAAGCTTATTCAAAATAAAA
TAAATCGAATTTATTAATATTCAAAAAATTAATAAGAGATTTAAAAAATGAATCTATTTACCAAA
CCAGTTCAAAAAATTATGATCATTTCAACAATTATATATTTCAAATCATTATCACCTTTTGTTTG
GTCATACAACAAATGTTTTTTATCATACAAGATTATTCGAAATAAAATAATAATAATCTATTAAT
ATTTCAAAAATTAATAAGAGATTTAAAAAATAAATTTGTATACTAAACCAGTTCAAATAGTTATG
ACTATTTGAACAATTATATACTTCAAATCATTATAACCTTTTGTTATGTCATAAAACAATTATTT
CTATTCATACAAGCTTATTCAAAATAAAACAATACTAATCTAATAATATTCCAAAAATTAATAAC
TAAGGGATTT
Found at i:54336 original size:12 final size:14
Alignment explanation
Indices: 54303--54341 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
54293 ATAATCTTTA
54303 ATAATTATATTATT
1 ATAATTATATTATT
54317 ATAATTATATT-TT
1 ATAATTATATTATT
54330 A-AATTATATTAT
1 ATAATTATATTAT
54342 ATTATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 9 0.38
13 4 0.17
14 11 0.46
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATAATTATATTATT
Found at i:54358 original size:16 final size:16
Alignment explanation
Indices: 54310--54377 Score: 57
Period size: 16 Copynumber: 4.1 Consensus size: 16
54300 TTAATAATTA
54310 TATTATTATAATTATAT
1 TATTATTATAA-TATAT
*
54327 T-TTAAATTATATTATAT
1 TATT--ATTATAATATAT
* *
54344 TATTTTTATAATATAA
1 TATTATTATAATATAT
* *
54360 TATTAATATAATGTAT
1 TATTATTATAATATAT
54376 TA
1 TA
54378 AATTAATAAA
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
16 25 0.62
17 7 0.17
18 8 0.20
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (16 bp):
TATTATTATAATATAT
Found at i:54708 original size:15 final size:15
Alignment explanation
Indices: 54681--54754 Score: 55
Period size: 15 Copynumber: 4.9 Consensus size: 15
54671 TTGTACTTTA
54681 TATATAA-TATAATG
1 TATATAATTATAATG
*
54695 TATATAATTATAATT
1 TATATAATTATAATG
* *
54710 TATATACAAGTAT-TTG
1 TATAT--AATTATAATG
*
54726 -ATTAGTAATTATAATT
1 TA-TA-TAATTATAATG
54742 TATATAATTATAA
1 TATATAATTATAA
54755 ATTATAATCG
Statistics
Matches: 46, Mismatches: 7, Indels: 13
0.70 0.11 0.20
Matches are distributed among these distances:
14 7 0.15
15 26 0.57
16 6 0.13
17 7 0.15
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (15 bp):
TATATAATTATAATG
Found at i:54759 original size:15 final size:15
Alignment explanation
Indices: 54731--54760 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
54721 ATTTGATTAG
*
54731 TAATTATAATTTATA
1 TAATTATAAATTATA
54746 TAATTATAAATTATA
1 TAATTATAAATTATA
54761 ATCGTATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAATTATAAATTATA
Found at i:54900 original size:15 final size:14
Alignment explanation
Indices: 54866--54912 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 14
54856 ATAAATTTAG
54866 TAATATTAAATTATTA
1 TAATATT-AATTA-TA
54882 TAATATATAATTATA
1 TAATAT-TAATTATA
54897 TAATATTAGATTATA
1 TAATATTA-ATTATA
54912 T
1 T
54913 TAGTTAAGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
14 2 0.07
15 15 0.52
16 11 0.38
17 1 0.03
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (14 bp):
TAATATTAATTATA
Found at i:55260 original size:19 final size:18
Alignment explanation
Indices: 55236--55273 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
55226 AAATAAAATT
55236 ATAATAA-TATATACTTATA
1 ATAATAAGT-TATAC-TATA
55255 ATAATAAGTTATACTATA
1 ATAATAAGTTATACTATA
55273 A
1 A
55274 CTTATTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 5 0.28
19 12 0.67
20 1 0.06
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (18 bp):
ATAATAAGTTATACTATA
Found at i:55292 original size:25 final size:26
Alignment explanation
Indices: 55222--55292 Score: 65
Period size: 25 Copynumber: 2.7 Consensus size: 26
55212 ATTGTTATTA
*
55222 TTATAAATAAAATTATAATAATATATAC
1 TTAT-AATAATATTAT-ATAATATATAC
* *
55250 TTATAATAATAAGT-TATACTATA-AC
1 TTATAATAAT-ATTATATAATATATAC
*
55275 TTATTATAATATTATATA
1 TTATAATAATATTATATA
55293 TTAAATTAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
24 2 0.06
25 15 0.42
26 7 0.19
27 6 0.17
28 6 0.17
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.44
Consensus pattern (26 bp):
TTATAATAATATTATATAATATATAC
Found at i:55586 original size:17 final size:17
Alignment explanation
Indices: 55544--55596 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
55534 AAATAATTGT
55544 TATAATTAA--ATAATAA
1 TATAATTAATTATAAT-A
*
55560 TCTAATTTAATTATAATA
1 TATAA-TTAATTATAATA
*
55578 TATAATTAATTAAAATA
1 TATAATTAATTATAATA
55595 TA
1 TA
55597 ATATAAATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 4 0.13
17 17 0.55
18 5 0.16
19 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
TATAATTAATTATAATA
Found at i:55587 original size:22 final size:23
Alignment explanation
Indices: 55546--55601 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 23
55536 ATAATTGTTA
55546 TAATTA-AATA-ATAATCTAATT
1 TAATTATAATATATAATCTAATT
55567 TAATTATAATATATAAT-TAATT
1 TAATTATAATATATAATCTAATT
* *
55589 AAAATATAATATA
1 TAATTATAATATA
55602 AATATTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 6 0.19
22 20 0.65
23 5 0.16
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (23 bp):
TAATTATAATATATAATCTAATT
Found at i:56575 original size:182 final size:179
Alignment explanation
Indices: 56119--56617 Score: 513
Period size: 179 Copynumber: 2.8 Consensus size: 179
56109 ATTGAAATAT
* *
56119 AAATAGTCATAACTATTTGAA-TTAGTTCGATAAACAGATTTATTTTTTAAATCTCCTACTTATT
1 AAATAGTCATAACTATTTGAACTT-GTTCGATAAACAGATTTATTTTTTAAATTTCTTACTTATT
* * *
56183 AA-TTTTTGAAATATTAATAAATTAATATTATTTTATTACGAAAAAGCTAGTATGATG-AAAAAC
65 AATTTTTTG-AATATTAATAAATTAATATTATTTTATTTCGAAAAAGCTTGTATGA-GCTAAAAC
* * * * * *
56246 GATTGCTTTATGTCAAAAAAAGTTCATAACGATTTGAAATAGATAAATGTTC
128 AATTGTTTTATGTAAAAAAAAGGTCATAACAATTTGAAATAGATAAATATTC
* * * * * ** * *
56298 AAATGGCCATAATTATTTTAAC-TGATTTGATAAATTGATTTATGTTTTAAATCTT-TAACTTAT
1 AAATAGTCATAACTATTTGAACTTG-TTCGATAAACAGATTTATTTTTTAAAT-TTCTTACTTAT
* ** * * * * *
56361 CAATTTTTAAAATATTAATAAAGTAATATTATTTTATTTGGGACAAGCTTTTATGAGCTAAAACA
64 TAATTTTTTGAATATTAATAAATTAATATTATTTTATTTCGAAAAAGCTTGTATGAGCTAAAACA
* * * *
56426 ATTGTTTTATGATAAAATAAAAGGTCATAATAATTTTAGATAGATAATTATTC
129 ATTGTTTTATG-TAAAA-AAAAGGTCATAACAATTTGAAATAGATAAATATTC
* * *
56479 AAATAGTCATAACTATTTGAACTTGTTCGATAAACAAATTCATTTTTTAAAATTTCTTGCTTATT
1 AAATAGTCATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTT-AAATTTCTTACTTATT
* * * * * *
56544 AATTTTTTGAATGTTAATAAATTAGTATTATTTTATTTTGAATAAGCATGTATGAACTAAAACAA
65 AATTTTTTGAATATTAATAAATTAATATTATTTTATTTCGAAAAAGCTTGTATGAGCTAAAACAA
*
56609 TTATTTTAT
130 TTGTTTTAT
56618 AACTAAACAA
Statistics
Matches: 253, Mismatches: 57, Indels: 17
0.77 0.17 0.05
Matches are distributed among these distances:
178 2 0.01
179 103 0.41
180 9 0.04
181 65 0.26
182 74 0.29
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (179 bp):
AAATAGTCATAACTATTTGAACTTGTTCGATAAACAGATTTATTTTTTAAATTTCTTACTTATTA
ATTTTTTGAATATTAATAAATTAATATTATTTTATTTCGAAAAAGCTTGTATGAGCTAAAACAAT
TGTTTTATGTAAAAAAAAGGTCATAACAATTTGAAATAGATAAATATTC
Found at i:57099 original size:19 final size:19
Alignment explanation
Indices: 57063--57100 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
57053 ATTCTAATAG
*
57063 TAATTAAAATTATTTTTAA
1 TAATTAAAATTAATTTTAA
57082 TAATTATAAA-TAATTTTAA
1 TAATTA-AAATTAATTTTAA
57101 ATTTTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATTAAAATTAATTTTAA
Found at i:58088 original size:36 final size:36
Alignment explanation
Indices: 58041--58129 Score: 144
Period size: 36 Copynumber: 2.5 Consensus size: 36
58031 ACCTTTTTAT
* *
58041 TCTGTTTTAAATTAGTTAAGATTATATGAACAATTA
1 TCTGTTTTAAATCAGTTAAGACTATATGAACAATTA
58077 TCTGTTTTAAATCAGTTAAGACTATATGAACAATTA
1 TCTGTTTTAAATCAGTTAAGACTATATGAACAATTA
*
58113 TCTATTTTAAATC-GTTA
1 TCTGTTTTAAATCAGTTA
58130 TGACCTTTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
35 4 0.08
36 46 0.92
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (36 bp):
TCTGTTTTAAATCAGTTAAGACTATATGAACAATTA
Found at i:58502 original size:27 final size:28
Alignment explanation
Indices: 58435--58502 Score: 77
Period size: 27 Copynumber: 2.4 Consensus size: 28
58425 TTAGATATCT
58435 ATTAATTAATAAAAATCAATAATTAAAATA
1 ATTAA-TAAT-AAAATCAATAATTAAAATA
* * *
58465 TTTAA-ATTAAAATCAAT-ATTCAAATA
1 ATTAATAATAAAATCAATAATTAAAATA
58491 ATTAATAATAAA
1 ATTAATAATAAA
58503 TTATAACTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
26 12 0.38
27 14 0.44
28 2 0.06
30 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.35
Consensus pattern (28 bp):
ATTAATAATAAAATCAATAATTAAAATA
Found at i:58503 original size:26 final size:27
Alignment explanation
Indices: 58437--58503 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
58427 AGATATCTAT
58437 TAATTAATAA-AAATCAATAATTAAAA
1 TAATTAATAATAAATCAATAATTAAAA
* * *
58463 TATTTAA-ATTAAAATCAAT-ATTCAAA
1 TAATTAATAAT-AAATCAATAATTAAAA
58489 TAATTAATAATAAAT
1 TAATTAATAATAAAT
58504 TATAACTAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
25 1 0.03
26 22 0.67
27 10 0.30
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (27 bp):
TAATTAATAATAAATCAATAATTAAAA
Found at i:61137 original size:14 final size:15
Alignment explanation
Indices: 61111--61139 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
61101 AATTGGTATT
61111 ATTTTATTATGAATA
1 ATTTTATTATGAATA
61126 ATTTTA-TATGAATA
1 ATTTTATTATGAATA
61140 GAAACAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (15 bp):
ATTTTATTATGAATA
Found at i:61282 original size:355 final size:356
Alignment explanation
Indices: 60547--61765 Score: 875
Period size: 355 Copynumber: 3.4 Consensus size: 356
60537 TTTAAATCTT
* * * *
60547 TTATTAATTTTT-GAAATATTAGTAAATTAGTATTATTTTATTCCAAAT-AGACTTGTATG-ATT
1 TTATTAATTTTTAG-AATAATAATAAATTAGTATTATTTTATTTCAAATAAG-CTTGTATGAACT
* * * * * * *
60609 AAAAACAATTGTTTTATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATG
64 -AAAATAATTATTTTATGACAAAACAAAAGATCAAAAT-ATTTGGAATAGATAATTATTCTAATA
* * * * ** *** * * * *
60674 GCCATAATTATTTGGA-TAATTTGATAAATTGATTTATTTTTTAAAACTCCAACTTCTTAATTTT
127 GTCATAACTATTTGAACTACTAGGA-AAACAAATTTATTATTT-AAA-T-C-TCTTATCAATTTT
** * ** * * * * * * * * *
60738 TGAAATATTAATAAAGCAATATTATTTTATTTTGAAAAAACTTTTATGTATTGAAATAGTT-GTT
187 AAAAATAATAATAAATTAACATTATTTTATTATGAATAAGCTTATATGAATAGAAACAATTAG-T
* * * ** * * * ** *
60802 TTATGATAAAATAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGTCATAACTATTT
251 TTATAACAAAACAAATTGTCATAACGATTTGAAATAAATAACAATTCAAATAGACATAACTA-TT
* * * * * *
60867 GAACT-TATTCGATAAATAGA--T-TTTTCTAAA-AT-T-T-C
315 -AAATGTGTTCAAAAAATAGATTTATTTTTTAAATCTCTATAC
* * ** *** *
60902 TTGTTAATATTCTA-AATTTTAATAAATTAGTATTACAATATTTCAAATAAGCATGTATGAACTA
1 TTATTAAT-TTTTAGAATAATAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACTA
* *
60966 AAATAATTATTTTTTGACTAAACAAAAGATCAAAATAATTTGGAATAGATAATTATTCTAATAGT
65 AAATAATTATTTTATGACAAAACAAAAGATCAAAAT-ATTTGGAATAGATAATTATTCTAATAGT
* * * * **
61031 CTTAACTATTTGAACTACTTTGGAAAACAAATTTA-TGTTTAAATC-CTTATTAATTTTTGAAAT
129 CATAACTATTTGAACTAC-TAGGAAAACAAATTTATTATTTAAATCTCTTATCAATTTTAAAAAT
*** ** * *
61094 AATAATAAATTGGTATTATTTTATTATGAATAATTTTATATGAATAGAAACAATTATTTTATAAT
193 AATAATAAATTAACATTATTTTATTATGAATAAGCTTATATGAATAGAAACAATTAGTTTATAAC
* **
61159 AAAACAAA-TGTCATAACGATTTGAAATAAATAACAATTCAAATGGACATGGCTATTTAAACT-T
258 AAAACAAATTGTCATAACGATTTGAAATAAATAACAATTCAAATAGACATAACTA-TTAAA-TGT
****
61222 GTTTGGTAAATAGATTTATTTTTTAAATCTCTA-AC
321 GTTCAAAAAATAGATTTATTTTTTAAATCTCTATAC
* * *
61257 TTATTAATTTTTAGAATAATAATAAATTAGTATTATTTTATTCCAAATAAACTTGTGTGAA-TAG
1 TTATTAATTTTTAGAATAATAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACTA-
* * * * * * * *
61321 AAACAATTAGTTTATGAGAAAACAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAATAGT
65 AAATAATTATTTTATGACAAAACAAAAGATCA-AAATATTTGGAATAGATAATTATTCTAATAGT
* * *
61386 AATAACTATTTGAACTTGCTAGGTAAACAAATTTATTATTTAAATCTTTTACTTATCAATTTTAA
129 CATAACTATTTGAAC-TACTAGGAAAACAAATTTATTATTTAAATC---T-CTTATCAATTTTAA
* * * * *
61451 AAATATTAATAAATTAACATTATTTTATTTTGAATAAGCTTGTATGAATAGAAATAATTGGTTTA
189 AAATAATAATAAATTAACATTATTTTATTATGAATAAGCTTATATGAATAGAAACAATTAGTTTA
* * *** * *
61516 TGACAAAACAAATTGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTGAAT
254 TAACAAAACAAATTGTCATAACGATTTGAAATAAATAACAATTCAAATAGACATAACTATTAAAT
* * * *
61581 GTGTTCAAAAAATATATTTATTTTTTAAATTTTTATTTAG
319 GTGTTCAAAAAATAGATTTATTTTTTAAATCTCTA--TAC
* * ** *
61621 TTATTAATTTTTGGAGTTTTAATAAATTTA-TATTATTTTA-TTCGAAATAAGCTTGCATGAAC-
1 TTATTAATTTTTAGAATAATAATAAA-TTAGTATTATTTTATTTC-AAATAAGCTTGTATGAACT
* * * *
61683 AAAACTAATTATTTTATGACAAAACAAATGGTCATAATGTTTGGAAATAGATAATTATT-TAGAT
64 AAAA-TAATTATTTTATGACAAAACAAAAGATCAAAATATTTGG-AATAGATAATTATTCTA-AT
61747 AGTCATAACTATTTGAACT
126 AGTCATAACTATTTGAACT
61766 TGTTTGATAA
Statistics
Matches: 683, Mismatches: 145, Indels: 64
0.77 0.16 0.07
Matches are distributed among these distances:
348 2 0.00
349 52 0.08
350 72 0.11
351 1 0.00
352 9 0.01
353 2 0.00
354 10 0.01
355 236 0.35
356 31 0.05
357 4 0.01
360 1 0.00
361 106 0.16
362 38 0.06
363 13 0.02
364 103 0.15
365 3 0.00
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.41
Consensus pattern (356 bp):
TTATTAATTTTTAGAATAATAATAAATTAGTATTATTTTATTTCAAATAAGCTTGTATGAACTAA
AATAATTATTTTATGACAAAACAAAAGATCAAAATATTTGGAATAGATAATTATTCTAATAGTCA
TAACTATTTGAACTACTAGGAAAACAAATTTATTATTTAAATCTCTTATCAATTTTAAAAATAAT
AATAAATTAACATTATTTTATTATGAATAAGCTTATATGAATAGAAACAATTAGTTTATAACAAA
ACAAATTGTCATAACGATTTGAAATAAATAACAATTCAAATAGACATAACTATTAAATGTGTTCA
AAAAATAGATTTATTTTTTAAATCTCTATAC
Found at i:61501 original size:181 final size:181
Alignment explanation
Indices: 59485--61856 Score: 1509
Period size: 180 Copynumber: 13.2 Consensus size: 181
59475 TACTTGTCTG
* ** * * * *
59485 AATACTAATAAATTTGTATAATTTTATTT-GAAATAAGCTTGGCATGAATAGAAA-ATTTCATTT
1 AATATTAATAAATTAATATTATTTTATTTCG-AATAAGCTT-GTATGAATAGAAACAATT-AGTT
* * * * * *
59548 TAGGACAAAACAAAAAGGTTATAGTGATTAGAAATAGATAGTTATTCAAATAGTCATAATTATTT
63 TATGACAAAAC-AAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
* * * * * *
59613 GTACTTGTTTGATAAACAGATTCATTTTTTAAATC---T-CTTATTAATTTTTAG
127 GAACTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* * * * *
59664 AATATTAATAAAATAGA-ATTATATTATTTCAAATAAGCTAGTATAGGCA-A-AAACAATT-GCT
1 AATATTAATAAATTA-ATATTATTTTATTTCGAATAAGCTTGTAT--GAATAGAAACAATTAG-T
* * * * *
59725 TTGTGATAAAATAAAAGGTAATAATGATTTGAAATAGATAATTATTCAAATAGTCACAACTATTT
62 TTATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTT
* * * ** * * * *
59790 GCACTGGTAAGGCCAATTGATTCATTTTTTAAATCTATTACTTATTAA-TTTCAA
127 GAACTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* * * * * * * * * *
59844 AATATTGATAAATTAGTATTACTCTATTTTGAATAAGAC-AGTATGAACAAAAATAATTATTTTA
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAG-CTTGTATGAATAGAAACAATTAGTTTA
* * * * * *
59908 TGACAATACAAATA-GTCATAATGATTCGAAATAAATAATTGTTCAAATAGTTATAACTAATT--
65 TGACAAAACAAA-AGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
* * * *
59970 ACATTAGTTTA-GTAAACA-ATTTTACTTTTTAAAT-TTCTTACTTCTTAATTTTCAA
129 AC-TT-G-TTAGGTAAATAGA-TTTATTTTTTAAATCTT-TTACTTATTAATTTTTAA
* * * * * * * * *
60025 AATTTTAATAAATTAATATTGTTTTATTCCGAACATA-CTTATATGTACAAAAAC-ATTTGTTTT
1 AATATTAATAAATTAATATTATTTTATTTCGAATA-AGCTTGTATGAATAGAAACAATTAG-TTT
* ** * * * *
60088 ATGACAAAATAAAAGAACCTAACGATTTGAAATAGATAATTGTTCAAATAGTCATAATTATTTGA
64 ATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
* * * * * * * * * *
60153 ACTGGTTAAGCAAATTGAATTGTTTTTTAAATCTCTTGCTTATTAAGTTTTGA
129 ACTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* ** * * * * * *
60206 AGTATTAATAAATTTGTTTTACTTTATTCCAAATAAG-TTACTAAGAA-ATG-AA-AATT-GTTT
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTT-GTATGAATA-GAAACAATTAG-TT
* * * * * * * * * *
60266 TACGACAAAACAAAAGGTCATAACGATTTGAAATAAAGAATTGTCCATATAGCCTTAAATATTTG
63 TATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTG
* * * * *
60331 AACTAGTTCA-GTAAATAAATTTA-TTTTTAAAT-TTCTTAGTTATTAATTTTCAG
128 AACTTGTT-AGGTAAATAGATTTATTTTTTAAATCTT-TTACTTATTAATTTTTAA
* * * * * *
60384 AATATTATTATATTATTATTATTTTATTTCGAATAAACTTGTGTGAATAGAAATAATT-GTTTTA
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTAG-TTTA
* * * ** * * *
60448 TGAGATAACAAAAGGTTATAACAATTTAAAATATATAATTGTTCAAATAGTCATAACTATTTGAA
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
* * * * *
60513 CTGGTTCA-GTAAACAGATTAACTTTTTAAATC--TT--TTATTAATTTTTGA
130 CTTGTT-AGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* * * * * *
60561 AATATTAGTAAATTAGTATTATTTTATTCCAAAT-AGACTTGTATGATTAAAAACAATT-GTTTT
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAG-CTTGTATGAATAGAAACAATTAG-TTT
* * * * *
60624 ATGACAAAACAAAAGTTCATAATGATTTGAAATAGATAATTATTCAAATGGCCATAATTATTTGG
64 ATGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGA
** * * * * *** * *
60689 A-TAATTTGATAAATTGATTTATTTTTTAAAACTCCAACTTCTTAATTTTTGA
129 ACTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
** * * * * * * * *
60741 AATATTAATAAAGCAATATTATTTTATTTTGAAAAAACTTTTATGTATTGAAATAGTT-GTTTTA
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTAG-TTTA
* * *
60805 TGATAAAATAAAAGGTCATAATGATTTTAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
* * * * * * *
60870 CTTATTCGATAAATAGA--T-TTTTCTAAA--ATTT-CTTGTTAATATTCT-A
130 CTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAAT-TTTTAA
* * *** * * * * *
60916 AATTTTAATAAATTAGTATTACAATATTTCAAATAAGCATGTATGAACTA-AAATAATTATTTTT
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAA-TAGAAACAATTAGTTTA
* * * * * * *
60980 TGACTAAACAAAAGATCAAAATAATTTGGAATAGATAATTATTCTAATAGTCTTAACTATTTGAA
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
** * * * * * *
61045 CTACTTTGGAAAACAAATTTA-TGTTTAAATC-----CTTATTAATTTTTGA
130 CTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* ** ** * *
61091 AATAATAATAAATTGGTATTATTTTATTAT-GAATAATTTTATATGAATAGAAACAATTATTTTA
1 AATATTAATAAATTAATATTATTTTATT-TCGAATAAGCTTGTATGAATAGAAACAATTAGTTTA
* * * * * ** * * ** *
61155 TAATAAAAC-AAATGTCATAACGATTTGAAATAAATAACAATTCAAATGGACATGGCTATTTAAA
65 TGACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAA
* * * *
61219 CTTGTTTGGTAAATAGATTTATTTTTTAAATCTCTAACTTATTAATTTTTAG
130 CTTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* * * * * *
61271 AATAATAATAAATTAGTATTATTTTATTCCAAATAAACTTGTGTGAATAGAAACAATTAGTTTAT
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTAGTTTAT
* * * * * *
61336 GAGAAAACAAAAGATCATAAAGATTTGAAATATATAATTGTTCAAATAGTAATAACTATTTGAAC
66 GACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
* * * * * *
61401 TTGCTAGGTAAACAAATTTATTATTTAAATCTTTTACTTATCAATTTTAAA
131 TTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
* * * *
61452 AATATTAATAAATTAACATTATTTTATTTTGAATAAGCTTGTATGAATAGAAATAATTGGTTTAT
1 AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTAGTTTAT
** * *
61517 GACAAAACAAATTGTCATAACGATTTGAAATAGATAATTGTTCAAATAGTCATAACTA-TTGAA-
66 GACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
** * * * **
61580 TGTGTTCA-AAAAATATATTTATTTTTTAAATTTTTATTTAGTTATTAATTTTTGG
131 T-TGTT-AGGTAAATAGATTTATTTTTTAAA--TCT-TTTACTTATTAATTTTTAA
* * * * * *
61635 AGTTTTAATAAATTTATATTATTTTA-TTCGAAATAAGCTTGCATGAACA-AAACTAATTATTTT
1 AATATTAATAAATTAATATTATTTTATTTCG-AATAAGCTTGTATGAATAGAAAC-AATTAGTTT
* * *
61698 ATGACAAAACAAATGGTCATAATG-TTTGGAAATAGATAATTATTTAGATAGTCATAACTATTTG
64 ATGACAAAACAAAAGGTCATAATGATTT-GAAATAGATAATTATTCAAATAGTCATAACTATTTG
* * * * * * * **
61762 AACTTGTTTGATAAACATATTCATTTTTTTAATTCTTTTACTCATTAATTTTTGG
128 AACTTGTTAGGTAAATAGATTTA-TTTTTTAAATCTTTTACTTATTAATTTTTAA
* ** *
61817 TATATTAATAAATTAGA-GCTATTTTATTTCAAATAAGCTT
1 AATATTAATAAATTA-ATATTATTTTATTTCGAATAAGCTT
61857 ATGTTAACTG
Statistics
Matches: 1694, Mismatches: 415, Indels: 165
0.74 0.18 0.07
Matches are distributed among these distances:
174 60 0.04
175 187 0.11
176 27 0.02
177 196 0.12
178 80 0.05
179 119 0.07
180 439 0.26
181 381 0.22
182 59 0.03
183 118 0.07
184 19 0.01
185 9 0.01
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (181 bp):
AATATTAATAAATTAATATTATTTTATTTCGAATAAGCTTGTATGAATAGAAACAATTAGTTTAT
GACAAAACAAAAGGTCATAATGATTTGAAATAGATAATTATTCAAATAGTCATAACTATTTGAAC
TTGTTAGGTAAATAGATTTATTTTTTAAATCTTTTACTTATTAATTTTTAA
Found at i:62095 original size:19 final size:18
Alignment explanation
Indices: 62071--62117 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
62061 TGTTTACAAA
62071 ACTATTTCAAATAATTAT
1 ACTATTTCAAATAATTAT
*
62089 GACTATTT-GAATAATTAT
1 -ACTATTTCAAATAATTAT
62107 -CTATTTCAAAT
1 ACTATTTCAAAT
62118 TGTTATTGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
16 6 0.24
17 3 0.12
18 9 0.36
19 7 0.28
ACGTcount: A:0.40, C:0.11, G:0.04, T:0.45
Consensus pattern (18 bp):
ACTATTTCAAATAATTAT
Found at i:62390 original size:181 final size:179
Alignment explanation
Indices: 62076--62710 Score: 642
Period size: 181 Copynumber: 3.5 Consensus size: 179
62066 ACAAAACTAT
* *
62076 TTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATTGTTATTG-CC-----TTTTGTC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA-TGCTA-TGACCTTTTGTTTTGTC
* * * * * * *
62135 ATAAAACAAATGTTTTTGTTCATATAAG-TTAGTTTGGAATAAAATAATATTAATTTATTAATAT
64 ATAAAACAATTGTTTCTATTCATACAAGCTTA-TTCGAAAT-AAATAATACTAATTTATTAATAT
* * *
62199 TTCAAAAATTAATACGTAAGAGATTTAAAAAATAAATATGTTTGCCATACCAG
127 TTCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCATACCAG
* * * * * * * *
62252 TTCAATTAGTTATAACTATTTGACCAAATATTTATTTCAAATCGCTATGACCATTTGTTTTATCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAT-GCTATGACCTTTTGTTTTGTCA
* * * *
62317 TAAAACAATTGTTTCTATTCATATAATCTTATTCGAAATAAAGTAATGCCAATTTATTAATATTT
65 TAAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAA-TAATACTAATTTATTAATATTT
** * * * *
62382 TGAAAATTAATAAGTAATG-GATTTAGAAAATGTATCT-TTTGGCTTGACCAG
129 CAAAAATTAATAAGTAA-GAGATTTAAAAAATGAATCTGTTTGCCAT-ACCAG
* * ** * *
62433 TGCAAACAATTATGACTATTTGAACAATTATCTATTTCAAATATTATGACCTTTTGTTTTCTCAC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATGCTATGACCTTTTGTTTTGTCAT
* * * * *
62498 AAAACAACTGTTTTTGTTCATACAAGCTTATTCAAAATAACATAATTCTAATTTATTAATATTTC
66 AAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAA-ATAATACTAATTTATTAATATTTC
* * *
62563 AAAAATTAATAAGTGAGAGATTTAAAAAATGAATCTGTTTACCGA-ACAAG
130 AAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCC-ATACCAG
* * * * *
62613 TTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTGTATTGTCG
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA-TGCTATGACCTTTTGTTTTGTCA
* *
62678 TAAAATAATTTTTTCTATTCATACAAGCTTATT
65 TAAAACAATTGTTTCTATTCATACAAGCTTATT
62711 TCAAATCTGT
Statistics
Matches: 370, Mismatches: 73, Indels: 27
0.79 0.16 0.06
Matches are distributed among these distances:
175 3 0.01
176 39 0.11
179 1 0.00
180 152 0.41
181 171 0.46
182 4 0.01
ACGTcount: A:0.38, C:0.11, G:0.10, T:0.41
Consensus pattern (179 bp):
TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATGCTATGACCTTTTGTTTTGTCAT
AAAACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAATAATACTAATTTATTAATATTTCA
AAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGCCATACCAG
Found at i:62469 original size:16 final size:17
Alignment explanation
Indices: 62437--62469 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
62427 GACCAGTGCA
62437 AACAATTATGACTATTTG
1 AACAATTAT-ACTATTTG
62455 AACAATTAT-CTATTT
1 AACAATTATACTATTT
62470 CAAATATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
18 9 0.60
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.42
Consensus pattern (17 bp):
AACAATTATACTATTTG
Found at i:62561 original size:180 final size:178
Alignment explanation
Indices: 62076--62715 Score: 604
Period size: 180 Copynumber: 3.6 Consensus size: 178
62066 ACAAAACTAT
*
62076 TTCAAATAATTATGACTATTTGAATAATTATCTATTTCAAATTGTTATTG-CCTTTTG----TCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA-TGTTA-TGACCTTTTGTTTTTCA
* * ***
62136 TAAAACAAATGTTTTTGTTCATATAAG-TTAGTTTGGAATAAAATAATAT-TAATTTATTAATAT
64 TAAAAC-AATGTTTTTATTCATACAAGCTTAGTTCAAAAT-AAATAAT-TCTAATTTATTAATAT
* * * *
62199 TTCAAAAATTAATACGTAAGAGATTTAAAAAATAAATATGTTTGCCAT-ACCAG
126 TTCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGAC-TGACCAG
* * * * * * * *
62252 TTCAATTAGTTATAACTATTTGACCAAATATTTATTTCAAATCGCTATGACCATTTGTTTTATCA
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAAT-GTTATGACCTTTTGTTTT-TCA
* * * * * *
62317 TAAAACAATTGTTTCTATTCATATAATCTTA-TTCGAAATAAAGTAATGCCAATTTATTAATATT
64 TAAAACAA-TGTTTTTATTCATACAAGCTTAGTTCAAAATAAA-TAATTCTAATTTATTAATATT
** * * *
62381 TTGAAAATTAATAAGTAATG-GATTTAGAAAATGTATCT-TTTGGCTTGACCAG
127 TCAAAAATTAATAAGTAA-GAGATTTAAAAAATGAATCTGTTTGAC-TGACCAG
* * * *
62433 TGCAAACAATTATGACTATTTGAACAATTATCTATTTCAAATATTATGACCTTTTGTTTTCTCAC
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATGTTATGACCTTTTGTTTT-TCAT
*
62498 AAAACAACTGTTTTTGTTCATACAAGCTTA-TTCAAAATAACATAATTCTAATTTATTAATATTT
65 AAAACAA-TGTTTTTATTCATACAAGCTTAGTTCAAAATAA-ATAATTCTAATTTATTAATATTT
* * *
62562 CAAAAATTAATAAGTGAGAGATTTAAAAAATGAATCTGTTT-ACCGAACAAG
128 CAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGACTG-ACCAG
* * * * * *
62613 TTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTGTATTGTCG
1 TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAA-TGTTATGACCTTTTGT-TTTTCA
* * *
62678 TAAAATAATTTTTTCTATTCATACAAGCTTATTTCAAA
64 TAAAACAATGTTTT-TATTCATACAAGCTTAGTTCAAA
62716 TCTGTTTACC
Statistics
Matches: 376, Mismatches: 67, Indels: 36
0.78 0.14 0.08
Matches are distributed among these distances:
175 3 0.01
176 43 0.11
179 2 0.01
180 160 0.43
181 156 0.41
182 12 0.03
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.41
Consensus pattern (178 bp):
TTCAAATAATTATGACTATTTGAACAATTATCTATTTCAAATGTTATGACCTTTTGTTTTTCATA
AAACAATGTTTTTATTCATACAAGCTTAGTTCAAAATAAATAATTCTAATTTATTAATATTTCAA
AAATTAATAAGTAAGAGATTTAAAAAATGAATCTGTTTGACTGACCAG
Found at i:62819 original size:120 final size:120
Alignment explanation
Indices: 62594--62830 Score: 285
Period size: 120 Copynumber: 2.0 Consensus size: 120
62584 TTAAAAAATG
* * *
62594 AATCTGTTTACCGAACAAGTTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCT
1 AATCTGTTTACCGAACAAGTTCAAATAATTATGACTATTGGAACAATTATCTAGTTCAAATCGCT
* * *
62659 ATAACCTTTTGTATTGTCGTAAAATAATTTTTTCTATTCATACAAGCTTATTTCA
66 ATAACCTTTTGTATTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCA
* * ** * * * * *
62714 AATCTGTTTACCGAATAATTTTGAATAGTTATGACTATTGGAATAATTATTTATTTCAAATCGTT
1 AATCTGTTTACCGAACAAGTTCAAATAATTATGACTATTGGAACAATTATCTAGTTCAAATCGCT
* * * * **
62779 ATGACCTTTTGTTTTGTCATAAAACAATTATTTGTGTTCATATTAGCTTATT
66 ATAACCTTTTGTATTGTCATAAAACAATTATTTCTATTCATACAAGCTTATT
62831 CGAATTAAAA
Statistics
Matches: 96, Mismatches: 21, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
120 96 1.00
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (120 bp):
AATCTGTTTACCGAACAAGTTCAAATAATTATGACTATTGGAACAATTATCTAGTTCAAATCGCT
ATAACCTTTTGTATTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCA
Found at i:63000 original size:300 final size:300
Alignment explanation
Indices: 62442--63010 Score: 719
Period size: 300 Copynumber: 1.9 Consensus size: 300
62432 GTGCAAACAA
*
62442 TTATGACTATTTGAACAATTATCTATTTCAAATATTATGACCTTTTGTTTTCTCACAAAACAACT
1 TTATGACTATTGGAACAATTATCTATTTCAAATATTATGACCTTTTGTTTTCTCACAAAACAACT
* * * *
62507 GTTTTTGTTCATACAAGCTTATTCAAAATAACATAATTCTAATTTATTAATATTTCAAAAATTAA
66 ATTTGTGTTCATACAAGCTTATTCAAAATAAAATAATTATAATTTATTAATATTTCAAAAATTAA
* * * * * ** * *
62572 TAAGTGAGAGATTTAAAAAATGAATCTGTTTACCGAACAAGTTCAAATAATTATGGCTATTTGAA
131 TAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACTATCTAAA
* * ** * * * * *
62637 CAATTATCTAGTTCAAATTGCTATAACCTTTTGTATTGTCGTAAAATAATTTTTTCTATTCATAC
196 CAATTATCCAGTTCAAATTGCTATAACCTTTTATATTACCATAAAACAATTATATCAATTCATAC
62702 AAGCTTATTTCAAATCTGTTTACCGAATAATTTTGAATAG
261 AAGCTTATTTCAAATCTGTTTACCGAATAATTTTGAATAG
* * * * * *
62742 TTATGACTATTGGAATAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAAT
1 TTATGACTATTGGAACAATTATCTATTTCAAAT-ATTATGACCTTTTGTTTTCTCACAAAACAAC
** * * *
62807 TATTTGTGTTCATATTAGCTTATTCGAATTAAAATAA-TATAATTTATTAATATTTCAACAATTA
65 TATTTGTGTTCATACAAGCTTATTCAAAATAAAATAATTATAATTTATTAATATTTCAAAAATTA
* * *
62871 ATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTTAATTAGTAATAACTATCTAA
130 ATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACTATCTAA
* * * *
62936 ATAATTATCCATTTCAAATTGTTATGACCTTTTAT-TTCACCATAAAACAATTATATCAATTCAT
195 ACAATTATCCAGTTCAAATTGCTATAACCTTTTATATT-ACCATAAAACAATTATATCAATTCAT
* *
63000 ATAGGCTTATT
259 ACAAGCTTATT
63011 CGAAATAAAA
Statistics
Matches: 224, Mismatches: 43, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
299 2 0.01
300 165 0.74
301 57 0.25
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.41
Consensus pattern (300 bp):
TTATGACTATTGGAACAATTATCTATTTCAAATATTATGACCTTTTGTTTTCTCACAAAACAACT
ATTTGTGTTCATACAAGCTTATTCAAAATAAAATAATTATAATTTATTAATATTTCAAAAATTAA
TAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTCAAATAATAATAACTATCTAAA
CAATTATCCAGTTCAAATTGCTATAACCTTTTATATTACCATAAAACAATTATATCAATTCATAC
AAGCTTATTTCAAATCTGTTTACCGAATAATTTTGAATAG
Found at i:63148 original size:181 final size:181
Alignment explanation
Indices: 62737--64134 Score: 1196
Period size: 181 Copynumber: 7.8 Consensus size: 181
62727 AATAATTTTG
* * *
62737 AATAGTTATGACTATTGGAATAATTATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
* * * ** * * *
62802 ACAATTATTTGTGTTCATATTAGCTTATTCGAATTAAAATAATA-TAATTTATTAATATTTCAAC
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAA
* * * * *
62866 AATTAATAAGTAAAAGATTTAAAAAATAAATATGTTTACCGAACAAGTTTA
131 AATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
* * * * * * * * * *
62917 ATTAGTAATAACTATCTAAATAATTATCCATTTCAAATTGTTATGACCTTTTATTTCACCATAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
* * * * * * *
62982 ACAATTATATCAATTCATATAGGCTTATTCGAAATAAAATAATACTAACTTATTACTATTCCAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAA
* * *
63047 AATTAATGAGTAAGAGATTTAAAAAATGAATCTACTTACCAAACAAGTTCA
131 AATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
* * * * **
63098 AATAGTTATGACTGTTTGAACAATTATCTATTTCATATTGTTATGACCTTTTGTTTTGCCATAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
* *
63163 ACAATTGTTTCTGTTCATACAAGCTTATTTC-AAATAAAATAATA-TAAATTTACTAATATTCCA
66 ACAATTGTTTCTATTCATACAAGCTTA-TTCGAAATAAAATAATACT-AATTTATTAATATTCCA
* * ** * * * *** *
63226 AAGATTAATAAGTAA-AAATACATAAAATAAATTTGTTTTTTAAACACGTTCAA
129 AAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTC-A
* * * * *
63279 AATAATTATAACCATTTGAACAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
* * * * *
63344 CCAATTGTTTCTATTCATAAAAGCTTATTCAAAATAAAATAATACTAATTTATTAAAATTTCAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAA
* * * * * ***
63409 AATTAATAAGTAAAATATTTTAAAAATAAATTTATTTACCTAGTGAGTTCA
131 AATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
* * * * *
63460 AATAATTATGACTATTTAAATAATTATTTATTTCAAATCGTTATGATCC-TTTGTTTTGTAATAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGA-CCTTTTGTTTTATCATAA
* ** * * **
63524 AACAATTGTTTCTATTCATGCAAAATTATTCAAAATAAAATAATACTTATTTATTAATATTTTAA
65 AACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAA
* * * ** *
63589 AAA-T--TAA-TAAGAGATTTAAAAACTATATCTGTTTATCGGACCAA-TTCA
130 AAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTA-CCAAACAAGTTCA
* * * * *
63637 AATAGTTATGAC-ATTTGAATAATTATCTATCTCAAATCGGTATGATC-TTTGTTTTGTCAAAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
* * * * * * * ** * *
63700 ATAATTATTTCTATCCATACAAACTTATTCGAAGTAAAATATTGCTAAACTAATAATATTCTAAA
66 ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAA
* * **** *
63765 AATTCATAAGTAAGAGATTTAAAAAATAAATGTATTTGTTGAACCAGTTCA
131 AATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
* * * *
63816 AATAGTTAAGACTATTAT-AATAATTATCTATTTCAAATCATTCTGACCTTTTG-TTTAGTTATA
1 AATAGTTATGACTATT-TGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTA-TCATA
* * * * * * * *
63879 AAATAATTG-TTC-AGTTCATATATGCTTATTTGAAATAAAATAATATTATTTTATTAACATTCA
64 AAACAATTGTTTCTA-TTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCC
* * * ** **
63942 AAAAATTAATAAGCAAG-GAATTAAAAAATAAATCCATTTGTCAAATTAGTTCA
128 AAAAATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
* * * * * ** * * *
63995 AATAGTTAAGACTATATGAAAAATTATTTATTTCAACTTATTATAATCTTTTGTTTTGTCATAAA
1 AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
* * * * * * * * *
64060 AAAATTATTT-AAGCTCATAGAAGCTTGA-TCGAAATAGAATAAAATTAATTTATTAATATTTCA
66 ACAATTGTTTCTA-TTCATACAAGCTT-ATTCGAAATAAAATAATACTAATTTATTAATATTCCA
*
64123 AAAATTTATAAG
129 AAAATTAATAAG
64135 ACATTTAGAA
Statistics
Matches: 985, Mismatches: 209, Indels: 48
0.79 0.17 0.04
Matches are distributed among these distances:
175 68 0.07
176 30 0.03
177 36 0.04
178 14 0.01
179 122 0.12
180 257 0.26
181 430 0.44
182 28 0.03
ACGTcount: A:0.42, C:0.10, G:0.08, T:0.40
Consensus pattern (181 bp):
AATAGTTATGACTATTTGAATAATTATCTATTTCAAATCGTTATGACCTTTTGTTTTATCATAAA
ACAATTGTTTCTATTCATACAAGCTTATTCGAAATAAAATAATACTAATTTATTAATATTCCAAA
AATTAATAAGTAAGAGATTTAAAAAATAAATCTATTTACCAAACAAGTTCA
Found at i:63182 original size:481 final size:481
Alignment explanation
Indices: 62280--63197 Score: 1135
Period size: 481 Copynumber: 1.9 Consensus size: 481
62270 TTTGACCAAA
* *
62280 TATTTATTTCAAATCGCTATGACCATTTGTTTTATCATAAAACAATTGTTTCTATTCATATAATC
1 TATTTATTTCAAATCGCTATGACCATTTGTTTTATCATAAAACAATTATTTCTATTCATATAAGC
* * * ** *
62345 TTATTCGAAATAAAGTAATGCCAATTTATTAATATTTTGAAAATTAATAAGTAATGGATTTAGAA
66 TTATTCGAAATAAAATAATGACAATTTATTAATATTTTCAAAATTAATAAGTAAAAGATTTAAAA
** * * * * * * * * *
62410 AATGTATCTTTTGGCTTGACCAGTGCAAACAATTATGACTATTTGAACAATTATCTATTTCAAAT
131 AATAAATATTTTGACTCGACAAGTGCAAACAATAATAACTATCTAAACAATTATCCATTTCAAAT
* * * * *** *
62475 ATTATGACCTTTTGTTTTCTCACAAAACAACTGTTTTTGTTCATACAAGCTTATTCAAAATAACA
196 ATTATGACCTTTTGATTTCCCACAAAACAACTATATCAATTCATACAAGCTTATTCAAAATAAAA
* * * * **
62540 TAATTCTAATTTATTAATATTTCAAAAATTAATAAGTGAGAGATTTAAAAAATGAATCTGTTTAC
261 TAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTACTTAC
* *
62605 CGAACAAGTTCAAATAATTATGGCTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTG
326 CAAACAAGTTCAAATAATTATGACTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTG
* * * *
62670 TATTGTCGTAAAATAATTTTTTCTATTCATACAAGCTTATTTCAAATCTGTTTACCGAATAATTT
391 TATTGCCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATCTGTTTACCGAATAATTT
62735 TGAATAGTTATGACTATTGGAATAAT
456 TGAATAGTTATGACTATTGGAATAAT
* * * * * *
62761 TATTTATTTCAAATCGTTATGACCTTTTGTTTTGTCATAAAACAATTATTTGTGTTCATATTAGC
1 TATTTATTTCAAATCGCTATGACCATTTGTTTTATCATAAAACAATTATTTCTATTCATATAAGC
* *
62826 TTATTCGAATTAAAATAAT-ATAATTTATTAATA-TTTCAACAATTAATAAGTAAAAGATTTAAA
66 TTATTCGAAATAAAATAATGACAATTTATTAATATTTTCAA-AATTAATAAGTAAAAGATTTAAA
** ** * *
62889 AAATAAATATGTTT-AC-CGAACAAGTTTAATTAGTAATAACTATCTAAATAATTATCCATTTCA
130 AAATAAATAT-TTTGACTCG-ACAAGTGCAAACAATAATAACTATCTAAACAATTATCCATTTCA
* * * * * *
62952 AATTGTTATGACCTTTT-ATTTCACCATAAAACAATTATATCAATTCATATAGGCTTATTCGAAA
193 AA-TATTATGACCTTTTGATTTC-CCACAAAACAACTATATCAATTCATACAAGCTTATTCAAAA
* *
63016 TAAAATAATACTAACTTATTACTATTCCAAAAATTAATGAGTAAGAGATTTAAAAAATGAATCTA
256 TAAAATAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTA
* * * * * *
63081 CTTACCAAACAAGTTCAAATAGTTATGACTGTTTGAACAATTATCTATTTCATATTGTTATGACC
321 CTTACCAAACAAGTTCAAATAATTATGACTATTTGAACAATTATCTAGTTCAAATTGCTATAACC
* *
63146 TTTTGTTTTGCCATAAAACAATTGTTTCTGTTCATACAAGCTTATTTCAAAT
386 TTTTGTATTGCCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAAT
63198 AAAATAATAT
Statistics
Matches: 363, Mismatches: 69, Indels: 10
0.82 0.16 0.02
Matches are distributed among these distances:
479 6 0.02
480 78 0.21
481 279 0.77
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.40
Consensus pattern (481 bp):
TATTTATTTCAAATCGCTATGACCATTTGTTTTATCATAAAACAATTATTTCTATTCATATAAGC
TTATTCGAAATAAAATAATGACAATTTATTAATATTTTCAAAATTAATAAGTAAAAGATTTAAAA
AATAAATATTTTGACTCGACAAGTGCAAACAATAATAACTATCTAAACAATTATCCATTTCAAAT
ATTATGACCTTTTGATTTCCCACAAAACAACTATATCAATTCATACAAGCTTATTCAAAATAAAA
TAATACTAACTTATTAATATTCCAAAAATTAATAAGTAAGAGATTTAAAAAATGAATCTACTTAC
CAAACAAGTTCAAATAATTATGACTATTTGAACAATTATCTAGTTCAAATTGCTATAACCTTTTG
TATTGCCATAAAACAATTGTTTCTATTCATACAAGCTTATTTCAAATCTGTTTACCGAATAATTT
TGAATAGTTATGACTATTGGAATAAT
Found at i:64209 original size:11 final size:11
Alignment explanation
Indices: 64193--64222 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
64183 CTATTTACAC
*
64193 AATTATATCGT
1 AATTATATCAT
64204 AATTATATCAT
1 AATTATATCAT
64215 AATTATAT
1 AATTATAT
64223 TAGATACTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (11 bp):
AATTATATCAT
Found at i:64533 original size:28 final size:24
Alignment explanation
Indices: 64502--64566 Score: 60
Period size: 28 Copynumber: 2.5 Consensus size: 24
64492 AGAATAATTT
*
64502 TAATATTACTTAATTATATACTATTAAA
1 TAATAATA-TTAATTATA-A-TATT-AA
64530 TAATTAATATTAATTATAATATTAA
1 TAA-TAATATTAATTATAATATTAA
*
64555 TAATTA-ATTAAT
1 TAATAATATTAAT
64567 AATTCTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
23 6 0.18
24 2 0.06
25 5 0.15
26 4 0.12
27 1 0.03
28 12 0.35
29 4 0.12
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (24 bp):
TAATAATATTAATTATAATATTAA
Found at i:64562 original size:25 final size:28
Alignment explanation
Indices: 64511--64562 Score: 83
Period size: 25 Copynumber: 2.0 Consensus size: 28
64501 TTAATATTAC
64511 TTAATTATATACTATTAAATAATTAATA
1 TTAATTATATACTATTAAATAATTAATA
64539 TTAATTATA-A-TATT-AATAATTAAT
1 TTAATTATATACTATTAAATAATTAAT
64563 TAATAATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 10 0.42
26 4 0.17
27 1 0.04
28 9 0.38
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (28 bp):
TTAATTATATACTATTAAATAATTAATA
Found at i:64629 original size:14 final size:13
Alignment explanation
Indices: 64606--64663 Score: 59
Period size: 13 Copynumber: 4.6 Consensus size: 13
64596 TTATAAAAAT
*
64606 ATATTTATTATTA
1 ATATTTATTATAA
64619 ATATTTGATTATAA
1 ATATTT-ATTATAA
*
64633 ATATTTATAATAA
1 ATATTTATTATAA
*
64646 TTA-TTA--ATAA
1 ATATTTATTATAA
64656 ATATTTAT
1 ATATTTAT
64664 ATGAACAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
10 6 0.16
11 3 0.08
12 3 0.08
13 14 0.37
14 12 0.32
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATATTTATTATAA
Found at i:65434 original size:22 final size:21
Alignment explanation
Indices: 65402--65443 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
65392 AATAGATATA
*
65402 ATAATAGTTAATAAGTTAAATT
1 ATAATAATTAATAAG-TAAATT
65424 ATAATAATTAATAAGTAAAT
1 ATAATAATTAATAAGTAAAT
65444 GTTTATAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.38
Consensus pattern (21 bp):
ATAATAATTAATAAGTAAATT
Found at i:65483 original size:32 final size:32
Alignment explanation
Indices: 65447--65516 Score: 76
Period size: 32 Copynumber: 2.2 Consensus size: 32
65437 AGTAAATGTT
*
65447 TATAATTATAATT-TAT-TTAATTTATTTAAATA
1 TATAA-TATAATTATATATTAA-ATATTTAAATA
*
65479 TATAATATTATTATATATTAAATATTTAAAT-
1 TATAATATAATTATATATTAAATATTTAAATA
65510 TA-AATAT
1 TATAATAT
65517 TTATTATAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
30 5 0.15
31 8 0.24
32 17 0.50
33 4 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (32 bp):
TATAATATAATTATATATTAAATATTTAAATA
Found at i:65511 original size:13 final size:13
Alignment explanation
Indices: 65495--65519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
65485 ATTATTATAT
65495 ATTAAATATTTAA
1 ATTAAATATTTAA
65508 ATTAAATATTTA
1 ATTAAATATTTA
65520 TTATAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAAATATTTAA
Found at i:65551 original size:34 final size:32
Alignment explanation
Indices: 65469--65555 Score: 88
Period size: 34 Copynumber: 2.6 Consensus size: 32
65459 TTATTTAATT
* * *
65469 TATTTAAA-TATATAATATTATTATATATTAAA
1 TATTTAAATTA-ATATTATTATAATATAATAAA
65501 TATTTAAATTAAATATTTATTATAATATAATAAA
1 TATTTAAATT-AATA-TTATTATAATATAATAAA
65535 TATTATACAATT-ATATTATTA
1 TATT-TA-AATTAATATTATTA
65556 ATTTAATTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
32 8 0.17
33 10 0.21
34 23 0.49
35 2 0.04
36 4 0.09
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (32 bp):
TATTTAAATTAATATTATTATAATATAATAAA
Found at i:65578 original size:17 final size:17
Alignment explanation
Indices: 65543--65587 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
65533 AATATTATAC
*
65543 AATTATATTATTAATTT
1 AATTATATTAATAATTT
65560 AATTATA-TAATAATATT
1 AATTATATTAATAAT-TT
*
65577 AATTTTATTAA
1 AATTATATTAA
65588 ACAATTGAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 6 0.25
17 15 0.62
18 3 0.12
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTATATTAATAATTT
Found at i:66108 original size:24 final size:22
Alignment explanation
Indices: 66064--66108 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
66054 AATTTTATTA
*
66064 AATTATTATAATTTTAGTTAAC
1 AATTATTATAATATTAGTTAAC
*
66086 AATTATTAACTAATATTATTTAA
1 AATTATT-A-TAATATTAGTTAA
66109 ATATTTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
23 1 0.05
24 11 0.58
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (22 bp):
AATTATTATAATATTAGTTAAC
Found at i:66639 original size:21 final size:22
Alignment explanation
Indices: 66613--66654 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
66603 AAATTAGTAT
* *
66613 TAATTATTATTAAT-ATTTTAA
1 TAATTAATATAAATGATTTTAA
66634 TAATTAATATAAATGATTTTA
1 TAATTAATATAAATGATTTTA
66655 CTTATTACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TAATTAATATAAATGATTTTAA
Found at i:67322 original size:22 final size:23
Alignment explanation
Indices: 67292--67338 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
67282 TTTAAAATGA
67292 TAAATATTTCAAATAATA-TTTAT
1 TAAATATTT-AAATAATATTTTAT
*
67315 TAAA-ATTTAAATTATATTTTAT
1 TAAATATTTAAATAATATTTTAT
67337 TA
1 TA
67339 TTAAATTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 11 0.50
23 4 0.18
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (23 bp):
TAAATATTTAAATAATATTTTAT
Found at i:67740 original size:27 final size:26
Alignment explanation
Indices: 67701--67755 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
67691 TAAATAAACA
* *
67701 ATTATTTATATTTAATAATATATATTT
1 ATTATTGAAATTTAATAATA-ATATTT
* *
67728 ATTATTGAAATTTGATAATACTATTT
1 ATTATTGAAATTTAATAATAATATTT
67754 AT
1 AT
67756 AAGAACAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.55
Consensus pattern (26 bp):
ATTATTGAAATTTAATAATAATATTT
Found at i:67933 original size:16 final size:16
Alignment explanation
Indices: 67914--67971 Score: 50
Period size: 16 Copynumber: 3.7 Consensus size: 16
67904 TTAAGTTTAT
67914 TAATTTATAATAAATA
1 TAATTTATAATAAATA
**
67930 TAA-TTATTAATATTTA
1 TAATTTA-TAATAAATA
*
67946 TAATATTATTATAAAT-
1 TAAT-TTATAATAAATA
67962 T-ATTTATAAT
1 TAATTTATAAT
67972 TATTATCCCA
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
14 6 0.18
15 5 0.15
16 14 0.42
17 5 0.15
18 3 0.09
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TAATTTATAATAAATA
Found at i:68042 original size:36 final size:37
Alignment explanation
Indices: 68002--68081 Score: 85
Period size: 36 Copynumber: 2.2 Consensus size: 37
67992 AATAATTTAG
68002 TTTATTATACAATTAATAATATT-TAATTAT-AAATA-A
1 TTTATTATACAATT-ATAA-ATTATAATTATAAAATATA
* **
68038 TTTATAATATTATTATAAATTAATAATTATAAAATATA
1 TTTATTATACAATTATAAATT-ATAATTATAAAATATA
68076 TTTATT
1 TTTATT
68082 TTATTAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
34 3 0.08
35 4 0.11
36 18 0.50
37 5 0.14
38 6 0.17
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (37 bp):
TTTATTATACAATTATAAATTATAATTATAAAATATA
Found at i:68045 original size:27 final size:27
Alignment explanation
Indices: 68015--68174 Score: 70
Period size: 27 Copynumber: 5.9 Consensus size: 27
68005 ATTATACAAT
68015 TAATAATATTTAATTATAAATAATTTA
1 TAATAATATTTAATTATAAATAATTTA
* *
68042 TAATATTATTATAA--ATTAATAA-TTA
1 TAATAATATT-TAATTATAAATAATTTA
* * *
68067 TAA-AATATATTTATT-TTATTAATTTA
1 TAATAATAT-TTAATTATAAATAATTTA
* *
68093 TTAATAAT-TATTAATT-T-ATTTATGTTA
1 -TAATAATAT-TTAATTATAAATAAT-TTA
* *
68120 TATATAAT-TTAAAAATTATAAATTA-TTA
1 TA-ATAATATT--TAATTATAAATAATTTA
68148 TAATATAATATTTAATTATAATATAAT
1 T-A-ATAATATTTAATTATAA-ATAAT
68175 AATAATTAAA
Statistics
Matches: 105, Mismatches: 11, Indels: 31
0.71 0.07 0.21
Matches are distributed among these distances:
24 6 0.06
25 13 0.12
26 18 0.17
27 29 0.28
28 22 0.21
29 11 0.10
30 6 0.06
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (27 bp):
TAATAATATTTAATTATAAATAATTTA
Found at i:68052 original size:22 final size:24
Alignment explanation
Indices: 68012--68057 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
68002 TTTATTATAC
68012 AATTAATAATATTTAATTATAAAT
1 AATTAATAATATTTAATTATAAAT
*
68036 AATTTATAATA-TT-ATTATAAAT
1 AATTAATAATATTTAATTATAAAT
68058 TAATAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.43
23 2 0.10
24 10 0.48
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
AATTAATAATATTTAATTATAAAT
Found at i:68183 original size:21 final size:20
Alignment explanation
Indices: 68140--68183 Score: 58
Period size: 18 Copynumber: 2.3 Consensus size: 20
68130 AAAAATTATA
68140 AATT-ATTATAATATAATAT
1 AATTAATTATAATATAATAT
68159 --TTAATTATAATATAATAAT
1 AATTAATTATAATATAAT-AT
68178 AATTAA
1 AATTAA
68184 AATAATTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
17 2 0.10
18 13 0.62
19 2 0.10
21 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AATTAATTATAATATAATAT
Found at i:68391 original size:27 final size:23
Alignment explanation
Indices: 68352--68427 Score: 134
Period size: 23 Copynumber: 3.3 Consensus size: 23
68342 ATTGATAAAT
68352 ATTAATTAGTAATTAATATTTTA
1 ATTAATTAGTAATTAATATTTTA
*
68375 ATTAATTAGTAATTAATCTTTTA
1 ATTAATTAGTAATTAATATTTTA
*
68398 ATTAATTAGCAATTAATATTTTA
1 ATTAATTAGTAATTAATATTTTA
68421 ATTAATT
1 ATTAATT
68428 CTTTAAATTA
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 50 1.00
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (23 bp):
ATTAATTAGTAATTAATATTTTA
Found at i:69318 original size:40 final size:39
Alignment explanation
Indices: 69247--69325 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 39
69237 AAATCTCTTA
69247 TTAATTTTTAGAATATTATTAAATTACTATTATTTCAAATC
1 TTAATTTTTAGAATATTATTAAATTA-TATTATTT-AAATC
*
69288 TTAATTTTTATATAGTATTATTAAA-T-TATTATTTAAAT
1 TTAATTTTTAGA-A-TATTATTAAATTATATTATTTAAAT
69326 TATATTCTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
39 4 0.11
40 8 0.23
41 11 0.31
42 2 0.06
43 10 0.29
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (39 bp):
TTAATTTTTAGAATATTATTAAATTATATTATTTAAATC
Found at i:70139 original size:31 final size:29
Alignment explanation
Indices: 70103--70177 Score: 89
Period size: 29 Copynumber: 2.5 Consensus size: 29
70093 GTTAATAAAC
* *
70103 TAATTATAACTAATTATTTATACTATTAGAA
1 TAATTATAAATAATAATTTATA-T-TTAGAA
70134 TAATTATTAAATAA-AATTTATATTTAGAA
1 TAATTA-TAAATAATAATTTATATTTAGAA
*
70163 TAATTATAATTAATA
1 TAATTATAAATAATA
70178 TTATTATCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
28 6 0.15
29 13 0.33
30 1 0.03
31 13 0.33
32 6 0.15
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (29 bp):
TAATTATAAATAATAATTTATATTTAGAA
Found at i:70355 original size:24 final size:24
Alignment explanation
Indices: 70306--70355 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
70296 TCTTAATTAT
*
70306 TTATCAATAAATTTAATTTTTGAA
1 TTATCAATAAATTTAACTTTTGAA
70330 TTATCAAATAAATATT-ACTTTT-AA
1 TTATC-AATAAAT-TTAACTTTTGAA
70354 TT
1 TT
70356 TGAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 9 0.39
25 12 0.52
26 2 0.09
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.50
Consensus pattern (24 bp):
TTATCAATAAATTTAACTTTTGAA
Found at i:70568 original size:23 final size:24
Alignment explanation
Indices: 70524--70568 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
70514 TTGATATAAC
* *
70524 TTAATATATTATTGAATTATTGAA
1 TTAATATATTATTAAATAATTGAA
70548 TTAAT-TATTATTAAATAATTG
1 TTAATATATTATTAAATAATTG
70569 TTGATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (24 bp):
TTAATATATTATTAAATAATTGAA
Found at i:70658 original size:10 final size:10
Alignment explanation
Indices: 70593--70642 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
70583 AATCAAACAA
70593 TATATAAATAT
1 TATATAAAT-T
70604 TAT-TAAATT
1 TATATAAATT
70613 TATATAAATT
1 TATATAAATT
* *
70623 TAAATCAATT
1 TATATAAATT
*
70633 TATATTAATT
1 TATATAAATT
70643 CTATTTATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
9 4 0.12
10 27 0.79
11 3 0.09
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (10 bp):
TATATAAATT
Found at i:71522 original size:21 final size:21
Alignment explanation
Indices: 71490--71535 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 21
71480 TGATCTATTG
*
71490 AATAATATATATTATTTATAATTA
1 AATAA-ATATAATA-TT-TAATTA
71514 AATAAATATAATATTTAATTA
1 AATAAATATAATATTTAATTA
71535 A
1 A
71536 CAATTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 7 0.33
22 2 0.10
23 7 0.33
24 5 0.24
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (21 bp):
AATAAATATAATATTTAATTA
Found at i:72009 original size:20 final size:20
Alignment explanation
Indices: 71962--72130 Score: 59
Period size: 20 Copynumber: 8.3 Consensus size: 20
71952 GTTAATAATT
* *
71962 ATAATATTAATAGTTATATA
1 ATAATATAAATAATTATATA
*
71982 ATATTATAAATAATT-TATA
1 ATAATATAAATAATTATATA
* *
72001 ATTAATATAACT-ATTGCT-T-
1 A-TAATATAAATAATT-ATATA
*
72020 ACAATATAAATTAA-T-TATA
1 ATAATATAAA-TAATTATATA
* * *
72039 ATTATATTAATAATTCAAATA
1 ATAATATAAATAATT-ATATA
*
72060 AT-ATAATAAATATATAATATA
1 ATAAT-ATAAATA-ATTATATA
*
72081 ATTAATACTATAA-ATATTATTCTA
1 A-TAATA-TA-AATA-ATTA-TATA
*
72105 ATAATCTAATATAATTATA-A
1 ATAATATAA-ATAATTATATA
72125 ATAATA
1 ATAATA
72131 ATTTATTTAT
Statistics
Matches: 111, Mismatches: 19, Indels: 38
0.66 0.11 0.23
Matches are distributed among these distances:
17 1 0.01
18 11 0.10
19 19 0.17
20 30 0.27
21 19 0.17
22 11 0.10
23 14 0.13
24 6 0.05
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (20 bp):
ATAATATAAATAATTATATA
Found at i:72078 original size:16 final size:17
Alignment explanation
Indices: 72057--72093 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
72047 AATAATTCAA
72057 ATAATATAATAAATA-T
1 ATAATATAATAAATACT
*
72073 ATAATATAATTAATACT
1 ATAATATAATAAATACT
72090 ATAA
1 ATAA
72094 ATATTATTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATATAATAAATACT
Found at i:72083 original size:48 final size:46
Alignment explanation
Indices: 72037--72194 Score: 126
Period size: 48 Copynumber: 3.3 Consensus size: 46
72027 AAATTAATTA
72037 TAATTATATTAATAATTCAAATAATATAATAAATATATAATATAAT
1 TAATTATATTAATAATTCAAATAATATAATAAATATATAATATAAT
* * *
72083 TAA-TACTATAAATATTATTCTAATAATCTAATATAAT-TATAAATAATAATT
1 TAATTA-TATTAATA--ATTCAAATAATATAATA-AATATAT-AAT-ATAA-T
* * * * *
72134 TATTTATATTAATTA-TAAAATAATA-ATTAATATTTATAATATAAT
1 TAATTATATTAATAATTCAAATAATATAATAA-ATATATAATATAAT
*
72179 GTAATTTTATTAATAA
1 -TAATTATATTAATAA
72195 ATTATTAGTT
Statistics
Matches: 88, Mismatches: 13, Indels: 22
0.72 0.11 0.18
Matches are distributed among these distances:
45 3 0.03
46 27 0.31
47 8 0.09
48 28 0.32
49 7 0.08
50 4 0.05
51 9 0.10
52 2 0.02
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.45
Consensus pattern (46 bp):
TAATTATATTAATAATTCAAATAATATAATAAATATATAATATAAT
Found at i:72160 original size:28 final size:28
Alignment explanation
Indices: 72116--72171 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
72106 TAATCTAATA
72116 TAATTATAAATAATAATT-TATTTATAT
1 TAATTATAAATAATAATTATATTTATAT
72143 TAATTATAAAATAATAATTAATATTTATA
1 TAATTAT-AAATAATAATT-ATATTTATA
72172 ATATAATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
27 7 0.27
28 11 0.42
30 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
TAATTATAAATAATAATTATATTTATAT
Found at i:72192 original size:19 final size:18
Alignment explanation
Indices: 72057--72198 Score: 57
Period size: 18 Copynumber: 7.7 Consensus size: 18
72047 AATAATTCAA
*
72057 ATAATATAA-TAA-ATAT
1 ATAATATAATTAATATTT
*
72073 ATAATATAATTAATA-CT
1 ATAATATAATTAATATTT
*
72090 ATAAATATTATTCTAATAATCTAAT
1 AT-AATA-TAAT-TAAT-AT-T--T
*
72115 ATAATTATAAATAATAATTT
1 ATAA-TATAATTAAT-ATTT
* *
72135 AT-TTAT-ATTAAT-TAT
1 ATAATATAATTAATATTT
*
72150 AAAATAATAATTAATATTT
1 ATAAT-ATAATTAATATTT
72169 ATAATATAATGTAAT-TTT
1 ATAATATAAT-TAATATTT
72187 ATTAATA-AATTA
1 A-TAATATAATTA
72199 TTAGTTATTA
Statistics
Matches: 97, Mismatches: 12, Indels: 33
0.68 0.08 0.23
Matches are distributed among these distances:
15 3 0.03
16 10 0.10
17 15 0.15
18 26 0.27
19 18 0.19
20 7 0.07
21 1 0.01
22 1 0.01
23 7 0.07
24 4 0.04
25 5 0.05
ACGTcount: A:0.52, C:0.02, G:0.01, T:0.45
Consensus pattern (18 bp):
ATAATATAATTAATATTT
Found at i:72335 original size:21 final size:21
Alignment explanation
Indices: 72311--72354 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
72301 AGTTATATTT
*
72311 ATAAATATTAAAATTATTATA
1 ATAAATATTAAAATTATAATA
**
72332 ATAAATATTGTAATTATAATA
1 ATAAATATTAAAATTATAATA
72353 AT
1 AT
72355 TGTTTATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (21 bp):
ATAAATATTAAAATTATAATA
Found at i:72365 original size:18 final size:19
Alignment explanation
Indices: 72325--72374 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
72315 ATATTAAAAT
72325 TATTATAATAAATATTGTA
1 TATTATAATAAATATTGTA
* *
72344 -ATTATAATAATTGTT-TA
1 TATTATAATAAATATTGTA
72361 TATTATAATCAAAT
1 TATTATAAT-AAAT
72375 TAACTAATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 2 0.08
18 21 0.81
19 3 0.12
ACGTcount: A:0.46, C:0.02, G:0.04, T:0.48
Consensus pattern (19 bp):
TATTATAATAAATATTGTA
Found at i:72447 original size:26 final size:29
Alignment explanation
Indices: 72418--72470 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
72408 TTTAGAATAA
72418 AATAATA-CTA-ATTT-TAATAATATTTC
1 AATAATAGCTATATTTGTAATAATATTTC
*
72444 AATAATAGTTATATTTGTAATAATATT
1 AATAATAGCTATATTTGTAATAATATT
72471 GATATTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 2 0.09
28 4 0.17
29 10 0.43
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (29 bp):
AATAATAGCTATATTTGTAATAATATTTC
Found at i:72570 original size:23 final size:24
Alignment explanation
Indices: 72543--72599 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
72533 CATATATATG
72543 TTAATTATATA-TAAT-TAATAAA
1 TTAATTATATATTAATATAATAAA
*
72565 TATAA-TATA-ATTTATATAATAAA
1 T-TAATTATATATTAATATAATAAA
72588 TTATATTATATA
1 TTA-ATTATATA
72600 ATGATATTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
21 1 0.04
22 10 0.36
23 12 0.43
24 4 0.14
25 1 0.04
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (24 bp):
TTAATTATATATTAATATAATAAA
Found at i:72581 original size:9 final size:9
Alignment explanation
Indices: 72544--72601 Score: 50
Period size: 9 Copynumber: 6.4 Consensus size: 9
72534 ATATATATGT
72544 TAATTATATA
1 TAATTA-ATA
72554 TAATTAATA
1 TAATTAATA
72563 -AATATAATA
1 TAAT-TAATA
*
72572 TAATTTATA
1 TAATTAATA
*
72581 TAATAAAT-
1 TAATTAATA
72589 TATATT-ATA
1 TA-ATTAATA
72598 TAAT
1 TAAT
72602 GATATTAAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
8 9 0.22
9 22 0.55
10 9 0.22
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (9 bp):
TAATTAATA
Found at i:72631 original size:25 final size:24
Alignment explanation
Indices: 72594--72655 Score: 56
Period size: 25 Copynumber: 2.6 Consensus size: 24
72584 TAAATTATAT
**
72594 TATATAATGATATTAAATATTTGAA
1 TATATAAAAATATTAAATATTT-AA
*
72619 TATATAAAAATA-TATATATTTAA
1 TATATAAAAATATTAAATATTTAA
*
72642 GA-ATAATAAATATT
1 TATATAA-AAATATT
72656 TATAGTTGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
22 4 0.13
23 8 0.26
24 9 0.29
25 10 0.32
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (24 bp):
TATATAAAAATATTAAATATTTAA
Found at i:72652 original size:41 final size:42
Alignment explanation
Indices: 72577--72656 Score: 103
Period size: 41 Copynumber: 1.9 Consensus size: 42
72567 TAATATAATT
*
72577 TATATAATAAATTATATTATATAATGATATTAAATATTTGAA
1 TATATAATAAATTATATTATATAATGATAATAAATATTTGAA
*
72619 TATATAA-AAA-TATATATATTTAA-GAATAATAAATATTT
1 TATATAATAAATTATAT-TATATAATG-ATAATAAATATTT
72657 ATAGTTGTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
40 6 0.18
41 21 0.62
42 7 0.21
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.44
Consensus pattern (42 bp):
TATATAATAAATTATATTATATAATGATAATAAATATTTGAA
Found at i:72804 original size:24 final size:24
Alignment explanation
Indices: 72739--72805 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
72729 ATCTCAATTT
* *
72739 ATAATTATAATATAATTATTAATA
1 ATAATTATAAAATATTTATTAATA
* *
72763 ATAACTATAAATTAATTTATT-ATA
1 ATAATTATAAAAT-ATTTATTAATA
72787 ATAATTAATAAAATATTTA
1 ATAATT-ATAAAATATTTA
72806 AATAATTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 23 0.66
25 12 0.34
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.45
Consensus pattern (24 bp):
ATAATTATAAAATATTTATTAATA
Found at i:73387 original size:29 final size:30
Alignment explanation
Indices: 73325--73389 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 30
73315 CCAATATTTG
*
73325 AAAAT-ATTAATAACAATTATCTGAATAAT
1 AAAATAATTAATAACAATTATCTCAATAAT
*
73354 -GAATAATTAATTAACAATTAT-TCAA-AAT
1 AAAATAATTAA-TAACAATTATCTCAATAAT
73382 AAAATAAT
1 AAAATAAT
73390 ACTAATTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
28 6 0.20
29 14 0.47
30 10 0.33
ACGTcount: A:0.57, C:0.06, G:0.03, T:0.34
Consensus pattern (30 bp):
AAAATAATTAATAACAATTATCTCAATAAT
Found at i:73494 original size:16 final size:15
Alignment explanation
Indices: 73464--73497 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
73454 TATTTCAATT
*
73464 ATAAATAATATTTGA
1 ATAAATAATAATTGA
73479 ATAAATAAATAATTGA
1 ATAAAT-AATAATTGA
73495 ATA
1 ATA
73498 TTAAATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (15 bp):
ATAAATAATAATTGA
Found at i:73501 original size:50 final size:46
Alignment explanation
Indices: 73431--73522 Score: 114
Period size: 47 Copynumber: 1.9 Consensus size: 46
73421 ATAAGAGATT
73431 TAAAAAATAAATAATGATTAATTTATTTCAATTATAAATAATATTTGAA
1 TAAAAAATAAATAATGATTAA---ATTTCAATTATAAATAATATTTGAA
* *
73480 TAAATAAATAATTGAAT-ATTAAATTTCAATTATTAATAATATT
1 TAAA-AAATAAAT-AATGATTAAATTTCAATTATAAATAATATT
73523 AATAATTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
47 20 0.51
49 4 0.10
50 12 0.31
51 3 0.08
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.42
Consensus pattern (46 bp):
TAAAAAATAAATAATGATTAAATTTCAATTATAAATAATATTTGAA
Found at i:73939 original size:12 final size:12
Alignment explanation
Indices: 73906--73992 Score: 63
Period size: 12 Copynumber: 7.0 Consensus size: 12
73896 TAATCTTAAA
*
73906 TAATATATTTAT
1 TAATATAATTAT
73918 TAATAAATAATTAT
1 TAAT--ATAATTAT
73932 TAATATAATTAATAT
1 TAATATAA-T--TAT
73947 TAATACTAATTAT
1 TAATA-TAATTAT
* *
73960 TATTATATTTA-
1 TAATATAATTAT
73971 T-AT-TAATTAT
1 TAATATAATTAT
*
73981 TAAAATAATTAT
1 TAATATAATTAT
73993 ATTATAGATT
Statistics
Matches: 60, Mismatches: 6, Indels: 18
0.71 0.07 0.21
Matches are distributed among these distances:
9 5 0.08
10 2 0.03
11 2 0.03
12 20 0.33
13 8 0.13
14 11 0.18
15 9 0.15
16 3 0.05
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.51
Consensus pattern (12 bp):
TAATATAATTAT
Found at i:73940 original size:19 final size:19
Alignment explanation
Indices: 73902--73996 Score: 57
Period size: 21 Copynumber: 4.7 Consensus size: 19
73892 ATATTAATCT
*
73902 TAAATAATATATTTATTAA
1 TAAATAATATATTAATTAA
73921 TAAATAAT-TATTAATATAA
1 TAAATAATATATTAAT-TAA
* * * *
73940 TTAATATTAATACTAATTAT
1 TAAATAAT-ATATTAATTAA
* * *
73960 TATTATATTTATATTAATTAT
1 TA-AATA-ATATATTAATTAA
73981 TAAAATAATTATATTA
1 T-AAATAA-TATATTA
73997 TAGATTATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
18 6 0.10
19 17 0.29
20 3 0.05
21 30 0.51
22 3 0.05
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (19 bp):
TAAATAATATATTAATTAA
Found at i:73967 original size:21 final size:21
Alignment explanation
Indices: 73943--73982 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
73933 AATATAATTA
73943 ATATTAATACTAATTATTATT
1 ATATTAATACTAATTATTATT
* *
73964 ATATTTATATTAATTATTA
1 ATATTAATACTAATTATTA
73983 AAATAATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
ATATTAATACTAATTATTATT
Found at i:73992 original size:21 final size:21
Alignment explanation
Indices: 73953--73996 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
73943 ATATTAATAC
** *
73953 TAATTATTATTATATTTATAT
1 TAATTATTAAAATAATTATAT
73974 TAATTATTAAAATAATTATAT
1 TAATTATTAAAATAATTATAT
73995 TA
1 TA
73997 TAGATTATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TAATTATTAAAATAATTATAT
Found at i:74192 original size:11 final size:11
Alignment explanation
Indices: 74176--74214 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
74166 TCAAACATAA
74176 ATTAATATTAT
1 ATTAATATTAT
74187 ATTAATATTTAT
1 ATTAATA-TTAT
*
74199 AATAATATTAT
1 ATTAATATTAT
74210 ATTAA
1 ATTAA
74215 AGGTTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.60
12 10 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (11 bp):
ATTAATATTAT
Found at i:74221 original size:23 final size:23
Alignment explanation
Indices: 74178--74222 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
74168 AAACATAAAT
*
74178 TAATATTATATTAATATTTATAA
1 TAATATTATATTAATAGTTATAA
74201 TAATATTATATTAA-AGGTTATA
1 TAATATTATATTAATA-GTTATA
74223 TTTTAACTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
TAATATTATATTAATAGTTATAA
Found at i:74317 original size:22 final size:20
Alignment explanation
Indices: 74270--74325 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 20
74260 ATAATTATTA
*
74270 AAATCAATAATTAAATGATT
1 AAATTAATAATTAAATGATT
*
74290 AAATTAATAATATAAATTTATT
1 AAATTAATAAT-TAAA-TGATT
* *
74312 ATATTAATATTTAA
1 AAATTAATAATTAA
74326 TAGAATATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 10 0.33
21 7 0.23
22 13 0.43
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (20 bp):
AAATTAATAATTAAATGATT
Found at i:74433 original size:9 final size:9
Alignment explanation
Indices: 74421--74497 Score: 68
Period size: 9 Copynumber: 8.0 Consensus size: 9
74411 AATGATAAAA
74421 ATTATTAAT
1 ATTATTAAT
74430 ATTATTAAT
1 ATTATTAAT
*
74439 AATATTATAT
1 ATTATTA-AT
74449 ATT-TTAAAT
1 ATTATT-AAT
74458 AATT-TTAAT
1 -ATTATTAAT
74467 ATTTGTATTAAAT
1 A--T-TATT-AAT
74480 ATTATTAAT
1 ATTATTAAT
74489 ATTATTAAT
1 ATTATTAAT
74498 TAATATAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
8 1 0.02
9 34 0.59
10 15 0.26
11 2 0.03
12 2 0.03
13 4 0.07
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (9 bp):
ATTATTAAT
Found at i:74458 original size:19 final size:20
Alignment explanation
Indices: 74423--74521 Score: 91
Period size: 19 Copynumber: 5.0 Consensus size: 20
74413 TGATAAAAAT
74423 TATTA-ATATTATT-AATAA
1 TATTATATATTATTAAATAA
74441 TATTATATATT-TTAAATAA
1 TATTATATATTATTAAATAA
* * *
74460 TTTTAATATTTGTATTAAATAT
1 TATT-ATATAT-TATTAAATAA
*
74482 TATTA-ATATTATTAATTAA
1 TATTATATATTATTAAATAA
*
74501 TATAATA-ATTATTTAAATAA
1 TATTATATATTA-TTAAATAA
74521 T
1 T
74522 TACAATTAAT
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
18 7 0.11
19 29 0.45
20 17 0.26
21 2 0.03
22 10 0.15
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (20 bp):
TATTATATATTATTAAATAA
Done.