Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168474.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_73, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125844
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
File 3 of 3
Found at i:74686 original size:16 final size:17
Alignment explanation
Indices: 74662--74705 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
74652 TTAAATTGTT
74662 AATATTAATAATA-G-A
1 AATATTAATAATATGTA
74677 AATAATTAAT-ATATGTA
1 AAT-ATTAATAATATGTA
74694 AATATTAATAAT
1 AATATTAATAAT
74706 TAATAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
15 6 0.24
16 13 0.52
17 6 0.24
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.39
Consensus pattern (17 bp):
AATATTAATAATATGTA
Found at i:74712 original size:26 final size:31
Alignment explanation
Indices: 74664--74743 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
74654 AAATTGTTAA
** * *
74664 TATTAATAATAGAAATAAT-TAATATATGTAAA
1 TATTAATAATATTAATAATATAATATA-AT-AT
74696 TATTAAT-A-ATTAATAATATAATATAATAT
1 TATTAATAATATTAATAATATAATATAATAT
74725 TATTAATAATATTAATAAT
1 TATTAATAATATTAATAAT
74744 TTTTAATAGC
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 8 0.20
30 9 0.22
31 17 0.41
32 7 0.17
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (31 bp):
TATTAATAATATTAATAATATAATATAATAT
Found at i:74733 original size:12 final size:12
Alignment explanation
Indices: 74694--74743 Score: 57
Period size: 12 Copynumber: 4.0 Consensus size: 12
74684 AATATATGTA
74694 AATATTAATAATT
1 AATATTAATAA-T
74707 AATAATATAAT-AT
1 AAT-AT-TAATAAT
*
74720 AATATTATTAAT
1 AATATTAATAAT
74732 AATATTAATAAT
1 AATATTAATAAT
74744 TTTTAATAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
11 3 0.09
12 15 0.47
13 7 0.22
14 3 0.09
15 4 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AATATTAATAAT
Found at i:74737 original size:9 final size:9
Alignment explanation
Indices: 74661--74743 Score: 52
Period size: 9 Copynumber: 9.4 Consensus size: 9
74651 TTTAAATTGT
74661 TAATATTAA
1 TAATATTAA
**
74670 TAATAGAAA
1 TAATATTAA
74679 T-A-ATTAA
1 TAATATTAA
74686 T-ATATGT-A
1 TAATAT-TAA
74694 -AATATTAA
1 TAATATTAA
*
74702 TAATTAATAA
1 TAA-TATTAA
74712 T-ATAATATAA
1 TAAT-AT-TAA
*
74722 TATTATTAA
1 TAATATTAA
74731 TAATATTAA
1 TAATATTAA
74740 TAAT
1 TAAT
74744 TTTTAATAGC
Statistics
Matches: 57, Mismatches: 8, Indels: 18
0.69 0.10 0.22
Matches are distributed among these distances:
7 6 0.11
8 10 0.18
9 28 0.49
10 12 0.21
11 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.42
Consensus pattern (9 bp):
TAATATTAA
Found at i:74749 original size:19 final size:19
Alignment explanation
Indices: 74694--74751 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 19
74684 AATATATGTA
74694 AATATTAATAA---TTAAT
1 AATATTAATAATTTTTAAT
*
74710 AATATAATATAATATTATTAAT
1 AATATTA-ATAAT-TT-TTAAT
74732 AATATTAATAATTTTTAAT
1 AATATTAATAATTTTTAAT
74751 A
1 A
74752 GCTTATATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
16 6 0.18
17 4 0.12
19 6 0.18
20 2 0.06
21 5 0.15
22 11 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
AATATTAATAATTTTTAAT
Found at i:74914 original size:24 final size:23
Alignment explanation
Indices: 74835--74914 Score: 63
Period size: 24 Copynumber: 3.3 Consensus size: 23
74825 TTATAATAAG
*
74835 TATTAATTATATTAATAATAAAAT-A
1 TATT-ATTAT-TTAA-AATAAATTAA
* * *
74860 TATTAATATTTAATAGAAATTAA
1 TATTATTATTTAAAATAAATTAA
*
74883 TCAATATTATTTAAAATAAATTAA
1 T-ATTATTATTTAAAATAAATTAA
74907 TGATTATT
1 T-ATTATT
74915 TATTAATAAT
Statistics
Matches: 43, Mismatches: 10, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
22 5 0.12
23 6 0.14
24 28 0.65
25 4 0.09
ACGTcount: A:0.51, C:0.01, G:0.03, T:0.45
Consensus pattern (23 bp):
TATTATTATTTAAAATAAATTAA
Found at i:75161 original size:19 final size:16
Alignment explanation
Indices: 75122--75152 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
75112 ATTAAAATAT
75122 TTAATCTATTTGATTA
1 TTAATCTATTTGATTA
75138 TTAATCTATTTGATT
1 TTAATCTATTTGATT
75153 TTTATTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.58
Consensus pattern (16 bp):
TTAATCTATTTGATTA
Found at i:75904 original size:10 final size:10
Alignment explanation
Indices: 75889--75914 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
75879 TATATAAATT
75889 AATAATTTAA
1 AATAATTTAA
75899 AATAATTTAA
1 AATAATTTAA
75909 AATAAT
1 AATAAT
75915 AGATATCTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
AATAATTTAA
Found at i:76193 original size:24 final size:24
Alignment explanation
Indices: 76165--76224 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
76155 AATGTCAACG
76165 TAATTAAAATTATCC-TAAT-TTAAT
1 TAATTAAAATTA-CCATAATATT-AT
76189 TAATTAATAA-TACCATAATATTAT
1 TAATTAA-AATTACCATAATATTAT
*
76213 TAATTAATATTA
1 TAATTAAAATTA
76225 ATATTATTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
23 3 0.10
24 24 0.77
25 4 0.13
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (24 bp):
TAATTAAAATTACCATAATATTAT
Found at i:76579 original size:17 final size:17
Alignment explanation
Indices: 76542--76579 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
76532 AATAACTAAT
*
76542 TATTAAAAAATTGTATT
1 TATTAAAAAATTGTATA
76559 TATTAAAATAATT-TATA
1 TATTAAAA-AATTGTATA
76576 TATT
1 TATT
76580 TATTTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (17 bp):
TATTAAAAAATTGTATA
Found at i:76598 original size:14 final size:13
Alignment explanation
Indices: 76556--76608 Score: 54
Period size: 14 Copynumber: 4.0 Consensus size: 13
76546 AAAAAATTGT
*
76556 ATTTATTAAAATA
1 ATTTATTATAATA
* *
76569 ATTTA-TATATTT
1 ATTTATTATAATA
76581 ATTTATATATAATA
1 ATTTAT-TATAATA
76595 ATTTAGTTATAATA
1 ATTTA-TTATAATA
76609 TTTTTACTAG
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
12 9 0.28
13 5 0.16
14 17 0.53
15 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (13 bp):
ATTTATTATAATA
Found at i:76694 original size:23 final size:25
Alignment explanation
Indices: 76668--76714 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
76658 TTTAATTATA
76668 TAAATAAAT-TAGATT-TATTATTT
1 TAAATAAATATAGATTATATTATTT
* *
76691 TAAATTAATATATATTATATTATT
1 TAAATAAATATAGATTATATTATT
76715 AAATATAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 5 0.25
25 7 0.35
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (25 bp):
TAAATAAATATAGATTATATTATTT
Found at i:77015 original size:13 final size:13
Alignment explanation
Indices: 76984--77029 Score: 53
Period size: 12 Copynumber: 3.6 Consensus size: 13
76974 TAATAATTCT
76984 TATT-ATTTAATTA
1 TATTAATTT-ATTA
76997 TA-TAATTTATTA
1 TATTAATTTATTA
77009 TATTAA-TTATTA
1 TATTAATTTATTA
77021 TATATAATT
1 TAT-TAATT
77030 CCATTTAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 16 0.55
13 12 0.41
14 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
TATTAATTTATTA
Found at i:77104 original size:16 final size:17
Alignment explanation
Indices: 77073--77105 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
77063 GATCATAATA
*
77073 ATTATTTATTTTTAAAT
1 ATTATTTATATTTAAAT
77090 ATTATTT-TATTTAAAT
1 ATTATTTATATTTAAAT
77106 TAATAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTATTTATATTTAAAT
Found at i:77149 original size:24 final size:24
Alignment explanation
Indices: 77085--77149 Score: 69
Period size: 24 Copynumber: 2.7 Consensus size: 24
77075 TATTTATTTT
* *
77085 TAAATATTATTTTATT-TAAATTAA
1 TAAATATTA-TTAATTATAAATAAA
*
77109 TAAATTATTAATAATTATAAATAAA
1 TAAA-TATTATTAATTATAAATAAA
*
77134 TAAATATTATTGATTA
1 TAAATATTATTAATTA
77150 AATCATAACT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 18 0.53
25 16 0.47
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.48
Consensus pattern (24 bp):
TAAATATTATTAATTATAAATAAA
Found at i:77212 original size:21 final size:22
Alignment explanation
Indices: 77183--77230 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
77173 AATTATCTAA
77183 AATTATAATATTAA-ATTAAAT
1 AATTATAATATTAATATTAAAT
* *
77204 AATTGTAATTTTAATATTAAAT
1 AATTATAATATTAATATTAAAT
*
77226 TATTA
1 AATTA
77231 CAATGATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AATTATAATATTAATATTAAAT
Found at i:77556 original size:12 final size:12
Alignment explanation
Indices: 77539--77593 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
77529 ATTTAAAGCT
*
77539 ATTAATTATTAG
1 ATTAATTATTAA
77551 ATTAATTATTAA
1 ATTAATTATTAA
77563 ATT-ATTAAATTAA
1 ATTAATT--ATTAA
*
77576 ATT-AGTATT-A
1 ATTAATTATTAA
77586 ATTAATTA
1 ATTAATTA
77594 ATTACAAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
10 4 0.11
11 9 0.24
12 14 0.38
13 10 0.27
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (12 bp):
ATTAATTATTAA
Found at i:77567 original size:20 final size:19
Alignment explanation
Indices: 77538--77597 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
77528 AATTTAAAGC
*
77538 TATTAATTATTAGATTAAT
1 TATTAATTATTAAATTAAT
77557 TATTAAATTATTAAATTAAAT
1 TATT-AATTATTAAATT-AAT
*
77578 TAGT-ATTAATT-AATTAAT
1 TATTAATT-ATTAAATTAAT
77596 TA
1 TA
77598 CAAATATTTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
18 5 0.14
19 11 0.31
20 14 0.39
21 6 0.17
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TATTAATTATTAAATTAAT
Found at i:78197 original size:19 final size:18
Alignment explanation
Indices: 78175--78258 Score: 61
Period size: 19 Copynumber: 4.6 Consensus size: 18
78165 ATGTAGTTTA
78175 AATTTA-AATTTATATAATT
1 AATTTATAA-TTATAT-ATT
78194 AATTTATAATTATATATT
1 AATTTATAATTATATATT
78212 AATGTTATAAATTA-A-ATT
1 AAT-TTAT-AATTATATATT
*
78230 -ATTTCTAAATTAATTATATT
1 AATTTAT-AATT-A-TATATT
78250 AA-TTATAAT
1 AATTTATAAT
78259 AAATCAAATA
Statistics
Matches: 55, Mismatches: 2, Indels: 16
0.75 0.03 0.22
Matches are distributed among these distances:
16 8 0.15
17 3 0.05
18 9 0.16
19 21 0.38
20 13 0.24
21 1 0.02
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (18 bp):
AATTTATAATTATATATT
Found at i:78686 original size:23 final size:22
Alignment explanation
Indices: 78646--78694 Score: 55
Period size: 23 Copynumber: 2.2 Consensus size: 22
78636 AATGAATAGT
78646 TATTTATAGTATTACTTATATGA
1 TATTTATAGTATTACTTA-ATGA
* *
78669 TATTTATA-TATATGCTTAATTA
1 TATTTATAGTAT-TACTTAATGA
78691 TATT
1 TATT
78695 AATTAATTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 13 0.57
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.55
Consensus pattern (22 bp):
TATTTATAGTATTACTTAATGA
Found at i:78960 original size:31 final size:31
Alignment explanation
Indices: 78920--79000 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
78910 TACTATAATA
**
78920 TATATTAATTTAAATATTAAATCTAATTTAT-T
1 TATA-TAATTTAAA-ATTAAATAAAATTTATAT
*
78952 TATATAA-TTAAAATTAATTAAAATTTATACT
1 TATATAATTTAAAATTAAATAAAATTTATA-T
78983 TAT-TAATTTAAAATTAAA
1 TATATAATTTAAAATTAAA
79001 ATAATTGTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
29 13 0.31
30 8 0.19
31 17 0.40
32 4 0.10
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.48
Consensus pattern (31 bp):
TATATAATTTAAAATTAAATAAAATTTATAT
Found at i:78992 original size:84 final size:83
Alignment explanation
Indices: 78904--79057 Score: 179
Period size: 84 Copynumber: 1.8 Consensus size: 83
78894 TTCTAGTTAT
* * * * *
78904 ATTTAATACTATAAT-ATATATTA-ATTTAAATATTAAATCTAATTTATTTATATAAT-TAAAAT
1 ATTTAAAACTAAAATAAT-TATTATAATTAAATAAT-AATCTAATTTAATT-T-TAATATAAAAT
78966 TAATTAAAATTTATACTTATTA
62 TAATTAAAATTTATACTTATTA
* * *
78988 ATTTAAAATTAAAATAATTGTTATAATTAAATAATAATCTAATTTAATTTTAATATATAATTAAT
1 ATTTAAAACTAAAATAATTATTATAATTAAATAATAATCTAATTTAATTTTAATATAAAATTAAT
79053 TAAAA
66 TAAAA
79058 AATAATATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
82 4 0.07
83 15 0.25
84 29 0.49
85 11 0.19
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.47
Consensus pattern (83 bp):
ATTTAAAACTAAAATAATTATTATAATTAAATAATAATCTAATTTAATTTTAATATAAAATTAAT
TAAAATTTATACTTATTA
Found at i:80604 original size:181 final size:180
Alignment explanation
Indices: 79746--81210 Score: 1132
Period size: 181 Copynumber: 8.2 Consensus size: 180
79736 TATTTTATAT
* * * * * * * *
79746 ATAATTGTTCAAATGGCCATAACTATTTAAATTGATTCAATAAA-ATGATTTATGTTTTAAATCT
1 ATAATTATTCAAATAGTCATAACTATTTGAACTG-TTCAGTAAACA-AATTTATTTTTTAAATCT
* * * * * ** *
79810 CTAACTTCTTAATTTTTGAAATATTAATAAAGTAATATTA--TT-TTT-GGATAAGCTTTTATGA
64 TTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGA
* * * *
79871 A-ATGAAACAATTATTTTATGATAAAACAAAAGGTCATAACAATTTTAAA-ATG
129 ATA-GAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATA-G
* * * * ** * * * *
79923 ATAATTGTTTAAATAGTTATAACTATTTAAACTTGTTTGGTAAATAGATTTATTTTTTAATTC-C
1 ATAATTATTCAAATAGTCATAACTATTTGAAC-TGTTCAGTAAACAAATTTATTTTTTAAATCTT
* * ** * *
79987 TTACTTATTAATTTTCT-AAATGTTAATAAAATAGTATTATTTTATTTTGAATAAGCATGTATGA
65 TTACTTATTAATTTT-TGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGA
* * * *
80051 ACT-G-AACAATTATTTTATGACTAAACAAAAGGTCAGAATGATTTGAAATAG
129 A-TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
* ** * ** * *
80102 ACAATTATT-ATAATAGTTTTAACTATTTGAATTAGTTCAACAAATACATTTATTTTTTAAATCT
1 ATAATTATTCA-AATAGTCATAACTATTTGAACT-GTTCAGTAAACAAATTTATTTTTTAAATCT
* * * ** * * * * * * *
80166 CTTATTTATTAATTTTT-AGAATATTATTAGTTTAGCAATATTTTACTCCGAATAAGTTTGTATG
64 TTTACTTATTAATTTTTGA-AATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATG
* * * * * * * *
80230 GACAGAAATAACTGTTTTATGACAAAACAAATA--TCATACCAATTTGAGATAA
128 AATAGAAACAATTGTTTTATGACAAAACAAA-AGGTCATAACGATTTGAAATAG
* * * * * * *
80282 ATAAATATTCAAATAGTCATAACTATTTGAATTGGTCTGATAAACAGATATAGTTTTTAAA---T
1 ATAATTATTCAAATAGTCATAACTATTTGAACTGTTCAG-TAAACAAATTTATTTTTTAAATCTT
** ** * *
80344 TT-CTTATTAATTTTCAAAATATTAATAAATTAGTATTAGTATTATTTTATTTTGAATAA-TTTT
65 TTACTTATTAATTTTTGAAATATTAAT--A--A--ATTAGTATTATTTTATTTCAAATAAGCTTA
* * * *
80407 TATGAATAGAAACAATTGTTTTATTACAAAAC-AATGGATCATAATGATTTGAAATAA
124 TATGAATAGAAACAATTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAATAG
* * *** *
80464 ATAATTATTTAAATAGTCATAATTATTTGAACTCACCCAGTAAACAAATTTATTTTTTAAATATT
1 ATAATTATTCAAATAGTCATAACTATTTGAACT-GTTCAGTAAACAAATTTATTTTTTAAATCTT
* * * *
80529 TTACTTATTAATTTTTGAAATTTTAATAAATTAGTGTTATTTTATTTCAAATAATCTTTTATGAA
65 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAA
* * *
80594 TAGAAACAATTGGTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAG
130 TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
* * * * * * * * *
80645 ATAATTATTCAAATGGTTA-AATTATTTTAACGTGTTCA-AAAAAAAAATTATTTTATATAT-TT
1 ATAATTATTCAAATAGTCATAACTATTTGAAC-TGTTCAGTAAACAAATTTATTTTTTAAATCTT
* * * * * * *
80707 TTCCTTATTAATCTTTGGAATATTAGTAAAGTTA-TATTATTTTATTTGAACTAAGCTTGTATGA
65 TTACTTATTAATTTTTGAAATATTAATAAA-TTAGTATTATTTTATTTCAAATAAGCTTATATGA
* * * *
80771 ACAAAAACAATTGTTTTATGGCAAAACAAAAGGTCATAACAATTTGAAATAG
129 ATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
* ** *** *
80823 ATAATTGTTCAAATAGTCATAACTATTTGAACTTGTTTGGTAAATGGATTCATTTTTTAAATCTT
1 ATAATTATTCAAATAGTCATAACTATTTGAAC-TGTTCAGTAAACAAATTTATTTTTTAAATCTT
* * * * *
80888 TTACTCATTAATTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCAAATAAGCCTATATGAA
65 TTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAA
* * * * *
80953 TTGATATAATTGTTTTATGGCGAAACAAAAGGTCATAACGATTTGAAATAG
130 TAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
* * * * * *
81004 ATAATTATTCAAATAATTATTACTATTTGAACTTGTT-TGATAAACACACTTATTTTTTAAATCT
1 ATAATTATTCAAATAGTCATAACTATTTGAAC-TGTTCAG-TAAACAAATTTATTTTTTAAATCT
* * * * *
81068 TTTACTTATTAATTGTTGAAATATTAATAAATTAATATTATTTTA-ATCTGAATAAGCTAATATG
64 TTTACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTC-AAATAAGCTTATATG
* * * *
81132 AACA-AAATAATTCTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAA
128 AATAGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
* *
81184 ATAATTGTTCCAATAGTCATAACTATT
1 ATAATTATTCAAATAGTCATAACTATT
81211 CAAAATTATT
Statistics
Matches: 1033, Mismatches: 211, Indels: 85
0.78 0.16 0.06
Matches are distributed among these distances:
176 52 0.05
177 52 0.05
178 121 0.12
179 129 0.12
180 244 0.24
181 321 0.31
182 87 0.08
183 2 0.00
184 1 0.00
185 3 0.00
186 21 0.02
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (180 bp):
ATAATTATTCAAATAGTCATAACTATTTGAACTGTTCAGTAAACAAATTTATTTTTTAAATCTTT
TACTTATTAATTTTTGAAATATTAATAAATTAGTATTATTTTATTTCAAATAAGCTTATATGAAT
AGAAACAATTGTTTTATGACAAAACAAAAGGTCATAACGATTTGAAATAG
Found at i:80880 original size:359 final size:361
Alignment explanation
Indices: 79818--81210 Score: 1019
Period size: 359 Copynumber: 3.9 Consensus size: 361
79808 CTCTAACTTC
* * * ** * *
79818 TTAATTTTTGAAATATTAATAAAGTAATATTA--TT-TTT-GGATAAGCTTTTATGAA-ATGAAA
1 TTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTTCAAATAAGCCTATATGAATA-GAAA
** * * * * *
79878 CAATTATTTTATGATAAAACAAAAGGTCATAACAATTTTAAAAT-GATAATTGTTTAAATAGTTA
65 CAATTGGTTTATGACAAAACAAAAGGTCATAACGA-TTTAAAATAGATAATTATTCAAATAATTA
* * *** * * * * * * *
79942 TAACTATTTAAACTTGTTTGGTAAATAGATTTATTTTTTAATTC-CTTACTTATTAATT-TTCTA
129 TAACTATTTGAACGTGTTTCAAAAAAAAAATTATTTTATAAATCTTTTACTTATTAATTGTT-GA
* * * * * ** *
80005 AATGTTAATAAAATAGTATTATTTTATTTTGAATAAGCATGTATGAAC-TGAACAATTATTTTAT
193 AATATTAATAAATTAATATTATTTTA-TTTGAATAAGCTTATATGAACAAAAACAATTGTTTTAT
* * * * * * **
80069 GACTAAACAAAAGGTCAGAATGATTTGAAATAGACAATTATT-ATAATAGTTTTAACTATTTGAA
257 GACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTGTTCA-AATAGTCATAACTATTTGAA
* ** ** * * * * * * *
80133 -TTAGTTCAACAAATACATTTATTTTTTAAATCTCTTATTTA
321 CTCA-CCCAGTAAACAAATTCATTTTTTAAATATTTTACTCA
* * ** * * * * * ** * * *
80174 TTAATTTTT-AGAATATTATTAGTTTAGCAATATTTTACTCCGAATAAGTTTGTATGGACAGAAA
1 TTAATTTTTGA-AATAGTAATAAATTAGTATTATTTTATTTCAAATAAGCCTATATGAATAGAAA
* * * * * * * * * * *
80238 TAACTGTTTTATGACAAAACAAATA--TCATACCAATTTGAGATAAATAAATATTCAAATAGTCA
65 CAATTGGTTTATGACAAAACAAA-AGGTCATAACGATTTAAAATAGATAATTATTCAAATAATTA
* * * * * *
80301 TAACTATTTGAA-TTG-GTCTGATAAACAGATATAGTTTT-TAAA---TTT-CTTATTAATT-TT
129 TAACTATTTGAACGTGTTTC-AAAAAAAAAAT-TA-TTTTATAAATCTTTTACTTATTAATTGTT
* * * * *
80358 CAAAATATTAATAAATTAGTATTAGTATTATTTTATTTTGAATAA-TTTTTATGAATAGAAACAA
191 -GAAATATTAATAAA-T--TA--A-TATTATTTTA-TTTGAATAAGCTTATATGAACAAAAACAA
* * * * *
80422 TTGTTTTATTACAAAAC-AATGGATCATAATGATTTGAAATAAATAATTATTTAAATAGTCATAA
248 TTGTTTTATGACAAAACAAAAGG-TCATAACGATTTGAAATAAATAATTGTTCAAATAGTCATAA
* * *
80486 TTATTTGAACTCACCCAGTAAACAAATTTATTTTTTAAATATTTTACTTA
312 CTATTTGAACTCACCCAGTAAACAAATTCATTTTTTAAATATTTTACTCA
** * * * *
80536 TTAATTTTTGAAATTTTAATAAATTAGTGTTATTTTATTTCAAATAATCTTTTATGAATAGAAAC
1 TTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTTCAAATAAGCCTATATGAATAGAAAC
* **
80601 AATTGGTTTATGACAAAACAAAAGGTCATAATGATTTAAAATAGATAATTATTCAAATGGTTA-A
66 AATTGGTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAATTATA
* * * * *
80665 ATTATTTTAACGTG-TTCAAAAAAAAAATTATTTTATATAT-TTTTCCTTATTAATCT-TTGGAA
131 ACTATTTGAACGTGTTTCAAAAAAAAAATTATTTTATAAATCTTTTACTTATTAAT-TGTTGAAA
* *
80727 TATTAGTAAAGTT-ATATTATTTTATTTGAACTAAGCTTGTATGAACAAAAACAATTGTTTTATG
195 TATTAATAAA-TTAATATTATTTTATTTGAA-TAAGCTTATATGAACAAAAACAATTGTTTTATG
* * *
80791 GCAAAACAAAAGGTCATAACAATTTGAAATAGATAATTGTTCAAATAGTCATAACTATTTGAACT
258 ACAAAACAAAAGGTCATAACGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACT
****** *** *
80856 TGTTTGGTAAATGGATTCATTTTTTAAATCTTTTACTCA
323 CACCCAGTAAACAAATTCATTTTTTAAATATTTTACTCA
* * * * *
80895 TTAATTTTTGGAATAGTAATAAGTTAGTATTATTTTATTTCAAATAAGCCTATATGAATTGATAT
1 TTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTTCAAATAAGCCTATATGAATAGAAAC
* * * * *
80960 AATTGTTTTATGGCGAAACAAAAGGTCATAACGATTTGAAATAGATAATTATTCAAATAATTATT
66 AATTGGTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAATTATA
* * * * * * *
81025 ACTATTTGAACTTGTTTGATAAACACACTTATTTTTTAAATCTTTTACTTATTAATTGTTGAAAT
131 ACTATTTGAACGTGTTTCAAAAAAAAAATTATTTTATAAATCTTTTACTTATTAATTGTTGAAAT
* * * *
81090 ATTAATAAATTAATATTATTTTAATCTGAATAAGCTAATATGAAC-AAAATAATTCTTTTATGAC
196 ATTAATAAATTAATATTATTTT-ATTTGAATAAGCTTATATGAACAAAAACAATTGTTTTATGAC
*
81154 AAAACAAAAGGTCATAACGATTTGAAATAAATAATTGTTCCAATAGTCATAACTATT
260 AAAACAAAAGGTCATAACGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATT
81211 CAAAATTATT
Statistics
Matches: 825, Mismatches: 173, Indels: 73
0.77 0.16 0.07
Matches are distributed among these distances:
355 1 0.00
356 48 0.06
357 9 0.01
358 28 0.03
359 256 0.31
360 59 0.07
361 111 0.13
362 243 0.29
363 46 0.06
364 21 0.03
365 3 0.00
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (361 bp):
TTAATTTTTGAAATAGTAATAAATTAGTATTATTTTATTTCAAATAAGCCTATATGAATAGAAAC
AATTGGTTTATGACAAAACAAAAGGTCATAACGATTTAAAATAGATAATTATTCAAATAATTATA
ACTATTTGAACGTGTTTCAAAAAAAAAATTATTTTATAAATCTTTTACTTATTAATTGTTGAAAT
ATTAATAAATTAATATTATTTTATTTGAATAAGCTTATATGAACAAAAACAATTGTTTTATGACA
AAACAAAAGGTCATAACGATTTGAAATAAATAATTGTTCAAATAGTCATAACTATTTGAACTCAC
CCAGTAAACAAATTCATTTTTTAAATATTTTACTCA
Found at i:81557 original size:180 final size:179
Alignment explanation
Indices: 81237--81874 Score: 601
Period size: 180 Copynumber: 3.5 Consensus size: 179
81227 ATAGATTTGA
* * * * * * *
81237 AATAAGCTTGTATGAATAGAAAA-AATTATTTTATCACAATACAAAAGGTTATAGCAATTTGAAC
1 AATAAGCTTATATGAACA-AAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAA
* * * *
81301 TAGATAATTGTTCAAATAGCCATAATTATTTGA-ACTTGTTCAA-TAAATAGATTCATTTTTTAA
65 TAGATAATTGTTCAAATAGTCATAATTATTT-ACA-TTGGTCAAGCAAAAAGATTCATTTTTTAA
* *
81364 ATCTCTCACTTATTAATTTTTGAAATTTTAATAAATTAGA-ATTATGTTATTCTG
128 ATC-CTTACTTATTAATTTTTGAAATATTAATAAATTA-ACATTAT-TTATTCTG
** * * *
81418 AATAAGCTTGCATGAACAAAAACAATTGTTTTGTGAGAAAACAAAAGGTCA-AACAATTTGAAAT
1 AATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAAT
* * * * * *
81482 AGATAATTGTTCCAATAGTCATAATTGTTTACATTGGTCAAGCCAAAATATACATTTTCTAAATC
66 AGATAATTGTTCAAATAGTCATAATTATTTACATTGGTCAAGCAAAAAGATTCATTTTTTAAATC
* *
81547 CATTACTTATTAATTTTTAAAATATTAATAAATTAACATTGCTTTATTCTG
131 C-TTACTTATTAATTTTTGAAATATTAATAAATTAACATT-ATTTATTCTG
* * * * * *
81598 AATAAGATTATATGAATAGAAACAATTGTTTTATGATAAAAACAAATGGTTATAACGATTTGAAA
1 AATAAGCTTATATGAACAAAAACAATTGTTTTATGA-CAAAACAAAAGGTTATAACAATTTGAAA
* * * * * * *
81663 TAAATATTTGGTCAAATAGTTATAACTAATTGTAC--TGGT-ATGGCAAAAAGATTTATTTTTTA
65 TAGATAATTGTTCAAATAGTCATAA-TTATT-TACATTGGTCA-AGCAAAAAGATTCATTTTTTA
* * * **
81725 AATCTTTTA-TGTATTAATTTTTGAAATATTAATAAACTAATATTATTTTATTCCA
127 AATC-CTTACT-TATTAATTTTTGAAATATTAATAAATTAACATTA-TTTATTCTG
* * * * * *
81780 AACAAACTTATATGAACAAAAATATTTGTTTTATGACAAAACAAAAGGTAATAATAATTTGAAAT
1 AATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAAT
* * *
81845 AGATAATTATTCAATTAGTCGTAATTATTT
66 AGATAATTGTTCAAATAGTCATAATTATTT
81875 GAAATATTTT
Statistics
Matches: 369, Mismatches: 74, Indels: 30
0.78 0.16 0.06
Matches are distributed among these distances:
179 11 0.03
180 135 0.37
181 94 0.25
182 123 0.33
183 3 0.01
184 3 0.01
ACGTcount: A:0.42, C:0.09, G:0.10, T:0.39
Consensus pattern (179 bp):
AATAAGCTTATATGAACAAAAACAATTGTTTTATGACAAAACAAAAGGTTATAACAATTTGAAAT
AGATAATTGTTCAAATAGTCATAATTATTTACATTGGTCAAGCAAAAAGATTCATTTTTTAAATC
CTTACTTATTAATTTTTGAAATATTAATAAATTAACATTATTTATTCTG
Found at i:82493 original size:180 final size:178
Alignment explanation
Indices: 81912--82902 Score: 708
Period size: 180 Copynumber: 5.5 Consensus size: 178
81902 TGACTTTTTG
* * *
81912 TTTTGTAATAAAACAATTGTTTCTATTCATACAAGCTTA-TTCAAATTAAAATAATATTAATTTA
1 TTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCGAA-TAAAATAATATTAATTTA
*** * * * * * * *
81976 TTAATATTTTGATAATTAATAAGTGAAAGATTTAAAAAATAAATATGTTTACCAAATAAGTTCAA
65 TTAATATTCCAAAAATTAATAAATTAAA-ATTTTAAAAATAAATATGTTTACAAAACAAGTT-TA
* * * * * **
82041 ATAGTCAAGACTATTTGAATAATTATCTATTTCAAATAATTGTGA-CCTTCTA
128 ATAGTTATGACTATTTGAACAATTATATATTTCAAAT-ATTATGATAATT-TA
* * * * * * * * *
82093 TTTTGTAATAAAATAATTGTTTC-AGTTAACATAAGCTTATTT-G-A-AATATAACAGCTCTAAC
1 TTTTGTCATAAAACAATTATTTCTA-TTCATACAAGCTTATTTCGAATAAAATAATA--T-TAAT
* * * * * ** * * **
82154 TTATTAATATACAAAAAAATTAATGAGTAAGAGAATTAAAAAAATGAATTTGTTTACCGAACAAG
62 TTATTAATATTC-CAAAAATTAATAAATTA-A-AATTTTAAAAATAAATATGTTTACAAAACAAG
* * * * * **
82219 TTTAAATAGTTATGACTATCTAAATAATTAT-TCCTTTCAAAACATTATGACCATTTA
124 TTT-AATAGTTATGACTATTTGAACAATTATAT-ATTTC-AAATATTATGATAATTTA
* * * * *
82276 TTTTGTCATAAAATAATTAGTTCTGTTCATGCAAGCTTATTTCGAATAAAATAATATAAATTTAT
1 TTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCGAATAAAATAATATTAATTTAT
* * ***
82341 TAAAACTCCAAAAATTAATAAATTAAAATTTTAAAAATAAATATGTTTTTTAAACACA-TTTAAT
66 TAATATTCCAAAAATTAATAAATTAAAATTTTAAAAATAAATATGTTTACAAAACA-AGTTTAAT
* *
82405 AGTTATGACTATTTGATCAATTATCTATTTTCAAATAGTTATGATAATTTA
130 AGTTATGACTATTTGAACAATTATATA-TTTCAAATA-TTATGATAATTTA
* *
82456 TTTTGTCATAAACCAATTATTTCTATTCATACAAGCTTA-TTCAAAATAAAATAATATTAATTTA
1 TTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTC-GAATAAAATAATATTAATTTA
*** * * * * ** * *
82520 TTAATATTTTTAAAATTAAT-AAGTAAAAGATTTAAATAATAAATTTGCTTACCGAGCAAGTTCA
65 TTAATATTCCAAAAATTAATAAATTAAAA-TTTTAAA-AATAAATATGTTTACAAAACAAGTT-T
* * * *
82584 AATAGTTATTACTATTTGAACAATTATATATTTCAAATCTTTATGAT-CTTTT
127 AATAGTTATGACTATTTGAACAATTATATATTTCAAAT-ATTATGATAATTTA
* * * *
82636 TTTTGTCATAAAACAATTGTTTCTATTCACACAAGTTTATTTGGAATAAAATAATATTAATTTAT
1 TTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCGAATAAAATAATATTAATTTAT
* * * * * * *
82701 TATTATTCTAAAAATTAATAAGTTAGAGATTTAAAAAATAAATCTATTTACAAAACAAGTTTAAA
66 TAATATTCCAAAAATTAATAAATTA-AAATTTTAAAAATAAATATGTTTACAAAACAAGTTT-AA
* * * ** * * * *
82766 TAGTCATGTCCATTTGAACTGTTATGTATTTCAAATCATTATGACATTTTG
129 TAGTTATGACTATTTGAACAATTATATATTTCAAAT-ATTATGATAATTTA
* * * * ** * **
82817 TTTTATTATAAAATAATTGTTTCTATTCATACAAAATTATTTAGAATAAAATAATACCAATTTAT
1 TTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCGAATAAAATAATATTAATTTAT
* *
82882 TACTATTTCAAAAATTAATAA
66 TAATATTCCAAAAATTAATAA
82903 GGATTTAAAA
Statistics
Matches: 643, Mismatches: 136, Indels: 62
0.76 0.16 0.07
Matches are distributed among these distances:
178 7 0.01
179 37 0.06
180 251 0.39
181 166 0.26
182 57 0.09
183 108 0.17
184 9 0.01
185 1 0.00
186 7 0.01
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (178 bp):
TTTTGTCATAAAACAATTATTTCTATTCATACAAGCTTATTTCGAATAAAATAATATTAATTTAT
TAATATTCCAAAAATTAATAAATTAAAATTTTAAAAATAAATATGTTTACAAAACAAGTTTAATA
GTTATGACTATTTGAACAATTATATATTTCAAATATTATGATAATTTA
Found at i:84269 original size:176 final size:175
Alignment explanation
Indices: 83855--84326 Score: 408
Period size: 176 Copynumber: 2.6 Consensus size: 175
83845 TTATTCGGAT
* * ** * * * * *
83855 TAAAATAATATAAATTTATTAATATTTTGACAATTAATAAGTAAAATATGTAAAAAAATTAAATA
1 TAAAATAATACAAAGTTATTAATATTAAGAAAATAAATAAGTAAAAGA-GT-TAAAAA-TAAATC
* * * * * * * * ** * **
83920 TCTTTACTGAACTAGATCAAACAATCATGACTATTTGAACAGTTATTAATTTCAAATCGTTACGA
63 TGTTTACTGAACAAGTTCAAATAATTATAACTATTTGAACAATTATTTATTGGAAATCGCTATAA
* *
83985 CCTTTTCTTCTGTCATAAAAAAATTATTTCAATTCATATAAGCTTATTTGAAA
128 CC---T-TT-TGTCATAAAAAAATTATTTCAATTCATACAAGCTCATTTGAAA
** ** * * * *
84038 TAAAATAATATTAAGTTATTAATATTTTGAAAATTAATAATTAAGAGATTTAAAAAATAAATCTG
1 TAAAATAATACAAAGTTATTAATATTAAGAAAATAAATAAGTAAAAGAGTT-AAAAATAAATCTG
* * * *
84103 TTTACTGAACAAGTTTAAATAATTATAATTATTTGTATAATTATTTATTGGAAATCGCTATAACC
65 TTTACTGAACAAGTTCAAATAATTATAACTATTTGAACAATTATTTATTGGAAATCGCTATAACC
** * *
84168 TTTTGTCATAAAATGATTTTTTCTATTCATACAAGCTCATTTTG-AA
130 TTTTGTCATAAAAAAATTATTTCAATTCATACAAGCTCA-TTTGAAA
* * *
84214 TAAAATAATACAAATTTAATTAA-ATTAAGACAATAAATAAGTAAAAGAGTTAAAAATAAATTTG
1 TAAAATAATACAAAGTT-ATTAATATTAAGAAAATAAATAAGTAAAAGAGTTAAAAATAAATCTG
* ** *
84278 TTTACTGAATAAGTTCAAATCGTTATGACTATTTGAACAATTATTTATT
65 TTTACTGAACAAGTTCAAATAATTATAACTATTTGAACAATTATTTATT
84327 TCAAATTGTT
Statistics
Matches: 235, Mismatches: 51, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
175 53 0.23
176 67 0.29
177 11 0.05
178 1 0.00
181 55 0.23
182 6 0.03
183 42 0.18
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (175 bp):
TAAAATAATACAAAGTTATTAATATTAAGAAAATAAATAAGTAAAAGAGTTAAAAATAAATCTGT
TTACTGAACAAGTTCAAATAATTATAACTATTTGAACAATTATTTATTGGAAATCGCTATAACCT
TTTGTCATAAAAAAATTATTTCAATTCATACAAGCTCATTTGAAA
Found at i:84513 original size:181 final size:179
Alignment explanation
Indices: 83765--84513 Score: 604
Period size: 181 Copynumber: 4.2 Consensus size: 179
83755 TTCAAATTAA
* * * * * *
83765 GACTATTT-AAGCAATTATTTATTTCAAATCATTATGACTTTT-TGTTCTATTATAAGATAATAG
1 GACTATTTGAA-CAATTATTTATTTCAAATCGTTATGACTTTTCT-TT-TGTCATAAAAAAAT-T
* * * * * * **
83828 TTTCTATTTATTCAAGCTTATTCGGATTAAAATAATATAAATTTATTAATATTTTGACAATTAAT
62 TTTTTATTCATACTAGCTTATTCGAAATAAAATAATATAAATTTATTAATATTTAAACAATTAAT
* * * * * *
83893 AAGTAAAATATGTAAAAAAATTAAATATCTTTACTGAACTAGATCAAACAATCAT
127 AAGTAAAAGAT-TTAAAAAA-TAAATATGTTTACTGAACAAGTTCAAATAATCAT
* * * *
83948 GACTATTTGAACAGTTATTAATTTCAAATCGTTACGACCTTTTCTTCTGTCATAAAAAAATTATT
1 GACTATTTGAACAATTATTTATTTCAAATCGTTATGA-CTTTTCTTTTGTCATAAAAAAATT-TT
** * * * *
84013 TCAATTCATA-TAAGCTTATTTGAAATAAAATAATATTAAGTTATTAATATTTTGAA-AATTAAT
64 TTTATTCATACT-AGCTTATTCGAAATAAAATAATATAAATTTATTAATA-TTTAAACAATTAAT
* * * * *
84076 AATTAAGAGATTTAAAAAATAAATCTGTTTACTGAACAAGTTTAAATAATTAT
127 AAGTAAAAGATTTAAAAAATAAATATGTTTACTGAACAAGTTCAAATAATCAT
* * * * ** * * **
84129 AATTATTTGTATAATTATTTATTGGAAATCGCTATAAC----CTTTTGTCATAAAATGATTTTTT
1 GACTATTTGAACAATTATTTATTTCAAATCGTTATGACTTTTCTTTTGTCATAAAAAAATTTTTT
* * * * *
84190 CTATTCATACAAGCTCATTTTG-AATAAAATAATACAAATTTAATTAA-A-TTAAGACAATAAAT
66 -TATTCATACTAGCTTA-TTCGAAATAAAATAATATAAATTT-ATTAATATTTAA-ACAATTAAT
* * * ** *
84252 AAGTAAAAGAGTT-AAAAATAAATTTGTTTACTGAATAAGTTCAAATCGTTAT
127 AAGTAAAAGATTTAAAAAATAAATATGTTTACTGAACAAGTTCAAATAATCAT
* * *
84304 GACTATTTGAACAATTATTTATTTCAAATTGTTATGACTTTTTATTTTGTCATAAAACAATTGTT
1 GACTATTTGAACAATTATTTATTTCAAATCGTTATGAC-TTTTCTTTTGTCATAAAAAAATT-TT
* * * * *
84369 TTTGTTCATACTAGCTTATTCGAAATAAAATAATATTAATTTCTTAATATTTCAACAATTTATAA
64 TTTATTCATACTAGCTTATTCGAAATAAAATAATATAAATTTATTAATATTTAAACAATTAATAA
* * * ** *
84434 TTAAAAGATTTTAAAAATAAATATGTTTGCCAAACAAGTTCAAATAGTCAT
129 GTAAAAGATTTAAAAAATAAATATGTTTACTGAACAAGTTCAAATAATCAT
* * * *
84485 GACAATTTGAATAATAATCTATTTCAAAT
1 GACTATTTGAACAATTATTTATTTCAAAT
84514 ATCGTGAGCT
Statistics
Matches: 446, Mismatches: 98, Indels: 46
0.76 0.17 0.08
Matches are distributed among these distances:
174 3 0.01
175 67 0.15
176 61 0.14
177 9 0.02
179 7 0.02
180 66 0.15
181 117 0.26
182 7 0.02
183 96 0.22
184 12 0.03
185 1 0.00
ACGTcount: A:0.42, C:0.09, G:0.08, T:0.41
Consensus pattern (179 bp):
GACTATTTGAACAATTATTTATTTCAAATCGTTATGACTTTTCTTTTGTCATAAAAAAATTTTTT
TATTCATACTAGCTTATTCGAAATAAAATAATATAAATTTATTAATATTTAAACAATTAATAAGT
AAAAGATTTAAAAAATAAATATGTTTACTGAACAAGTTCAAATAATCAT
Found at i:85272 original size:19 final size:20
Alignment explanation
Indices: 85238--85275 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
85228 AATTTATCTG
85238 TATATATATAAATATAATTT
1 TATATATATAAATATAATTT
*
85258 TATAT-TATGAATATAATT
1 TATATATATAAATATAATT
85276 AATCATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
TATATATATAAATATAATTT
Found at i:85480 original size:22 final size:22
Alignment explanation
Indices: 85452--85532 Score: 58
Period size: 22 Copynumber: 3.7 Consensus size: 22
85442 TACAGTTAAT
*
85452 AATTTAATAAATTAAATTATTA
1 AATTTAACAAATTAAATTATTA
* *
85474 AATTTAACAATTTATA-TATTA
1 AATTTAACAAATTAAATTATTA
* * *
85495 TACTATAACAATTTAAATATATTA
1 -AATTTAACAAATTAAAT-TATTA
* *
85519 TATTT-ATAAATTAA
1 AATTTAACAAATTAA
85533 TATAATATTT
Statistics
Matches: 45, Mismatches: 11, Indels: 6
0.73 0.18 0.10
Matches are distributed among these distances:
21 5 0.11
22 33 0.73
23 2 0.04
24 5 0.11
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.46
Consensus pattern (22 bp):
AATTTAACAAATTAAATTATTA
Found at i:85494 original size:24 final size:23
Alignment explanation
Indices: 85467--85570 Score: 63
Period size: 23 Copynumber: 4.5 Consensus size: 23
85457 AATAAATTAA
85467 ATTATTAAATTTAACAATTTATAT
1 ATTATTAAATTTAA-AATTTATAT
* * *
85491 ATTA-T-ACTATAACAATTTAAAT
1 ATTATTAAATTTAA-AATTTATAT
* *
85513 A-TATTATATTTATAAATTAATAT
1 ATTATTAAATTTA-AAATTTATAT
* * *
85536 AATATTTAATTATAATATTTATA-
1 ATTATTAAATT-TAAAATTTATAT
*
85559 ATTATTTAATTT
1 ATTATTAAATTT
85571 TATCTAGTAA
Statistics
Matches: 62, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
21 2 0.03
22 17 0.27
23 22 0.35
24 19 0.31
25 2 0.03
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (23 bp):
ATTATTAAATTTAAAATTTATAT
Found at i:86044 original size:20 final size:20
Alignment explanation
Indices: 86016--86053 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
86006 TCGGTAACAA
*
86016 AATTCAATTATAAATTTAGT
1 AATTAAATTATAAATTTAGT
*
86036 AATTAAATTATAATTTTA
1 AATTAAATTATAAATTTA
86054 ATTTTAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (20 bp):
AATTAAATTATAAATTTAGT
Found at i:86248 original size:18 final size:17
Alignment explanation
Indices: 86221--86257 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
86211 TTATAAACCT
86221 TTTAAAATCATAAATAA
1 TTTAAAATCATAAATAA
*
86238 TTTATAAATCATAATTAA
1 TTTA-AAATCATAAATAA
86256 TT
1 TT
86258 GGACCTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (17 bp):
TTTAAAATCATAAATAA
Found at i:86469 original size:31 final size:32
Alignment explanation
Indices: 86434--86510 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 32
86424 TGTATAACAT
* *
86434 ATTAATATATATTATTAATTATTATTATG-TA
1 ATTAATATATATTAGTAATTATTATTAAGATA
* *
86465 ATTAATATTTAATT-GTAATTATTATTAAGATT
1 ATTAATATAT-ATTAGTAATTATTATTAAGATA
*
86497 ATTAATATAAATTA
1 ATTAATATATATTA
86511 ATATTAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
31 25 0.68
32 12 0.32
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (32 bp):
ATTAATATATATTAGTAATTATTATTAAGATA
Found at i:86501 original size:25 final size:24
Alignment explanation
Indices: 86473--86538 Score: 60
Period size: 25 Copynumber: 2.6 Consensus size: 24
86463 TAATTAATAT
*
86473 TTAATTGTAATTATTATTAAGATTA
1 TTAATT-TAATTATTATTAAGATAA
* * *
86498 TTAATATAAATTAATATTAATATAA
1 TTAAT-TTAATTATTATTAAGATAA
*
86523 TTTATTATAATTATTA
1 TTAATT-TAATTATTA
86539 ACAAATTATA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
24 1 0.03
25 30 0.94
26 1 0.03
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (24 bp):
TTAATTTAATTATTATTAAGATAA
Found at i:86636 original size:6 final size:6
Alignment explanation
Indices: 86439--86691 Score: 60
Period size: 6 Copynumber: 42.3 Consensus size: 6
86429 AACATATTAA
* * *
86439 TATATAT TATTAAT TATTAT TATGTAAT TA-ATAT T-TAAT TGTAAT TATTAT
1 TATA-AT TA-TAAT TATAAT TA--TAAT TATA-AT TATAAT TATAAT TATAAT
*
86490 TA-AGAT TATTAA- TATAAA T-TAA- TATTAA- TATAAT T-T-AT TATAAT
1 TATA-AT TA-TAAT TATAAT TATAAT TA-TAAT TATAAT TATAAT TATAAT
* * * * *
86534 TATTAA- CA-AAT TATAAC TATTAT TATTAT TAT-A- TATAAT AATATAT
1 TA-TAAT TATAAT TATAAT TATAAT TATAAT TATAAT TATAAT TATA-AT
* *
86580 TA-AAC TATACATT TATATAT AAATAAT ATATATAT ATATAA- TATAA-
1 TATAAT TATA-A-T TATA-AT -TATAAT -TATA-AT -TATAAT TATAAT
* * * *
86626 T-TAAT TATAATT TATAAA TATAAT TATTAT TATAA- TATTAT TATAAA
1 TATAAT TATAA-T TATAAT TATAAT TATAAT TATAAT TATAAT TATAAT
86673 T-TAA- TATTAAT TATAAT TA
1 TATAAT TA-TAAT TATAAT TA
86692 AAAATTATTA
Statistics
Matches: 189, Mismatches: 24, Indels: 67
0.68 0.09 0.24
Matches are distributed among these distances:
4 13 0.07
5 35 0.19
6 88 0.47
7 30 0.16
8 23 0.12
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (6 bp):
TATAAT
Found at i:86641 original size:17 final size:18
Alignment explanation
Indices: 86621--86690 Score: 67
Period size: 17 Copynumber: 4.0 Consensus size: 18
86611 ATATATATAA
86621 TATAAT-TAATTATAATT
1 TATAATATAATTATAATT
*
86638 TATAAATATAATTATTA-T
1 TAT-AATATAATTATAATT
* *
86656 TATAATATTATTATAA-A
1 TATAATATAATTATAATT
86673 T-TAATATTAATTATAATT
1 TATAATA-TAATTATAATT
86691 AAAAATTATT
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
16 5 0.12
17 23 0.53
18 7 0.16
19 8 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TATAATATAATTATAATT
Found at i:86646 original size:28 final size:27
Alignment explanation
Indices: 86610--86690 Score: 89
Period size: 28 Copynumber: 3.0 Consensus size: 27
86600 AAATAATATA
86610 TATATATATAATATAATTAATTATAATT
1 TATATATATAAT-TAATTAATTATAATT
*
86638 TATAAATATAATT-ATT-ATTATAATAT
1 TATATATATAATTAATTAATTATAAT-T
86664 TAT-TATA-AATTAATATTAATTATAATT
1 TATATATATAATT-A-ATTAATTATAATT
86691 AAAAATTATT
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
24 4 0.09
25 11 0.24
26 7 0.15
27 5 0.11
28 19 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TATATATATAATTAATTAATTATAATT
Found at i:86649 original size:43 final size:44
Alignment explanation
Indices: 86561--86668 Score: 120
Period size: 45 Copynumber: 2.5 Consensus size: 44
86551 TATTATTATT
86561 ATTATATATA-ATAATATATTAAACTATACATTTATATATAAATA
1 ATTATATATATATAATATATT-AACTATACATTTATATATAAATA
* *
86605 ATATATATATATATAATATAATTAATTATA-ATTTATA-A-ATATA
1 AT-TATATATATATAATAT-ATTAACTATACATTTATATATAAATA
86648 ATTAT-TAT-TATAATATTATTA
1 ATTATATATATATAATA-TATTA
86669 TAAATTAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 12
0.81 0.03 0.17
Matches are distributed among these distances:
40 11 0.19
41 4 0.07
42 3 0.05
43 6 0.10
44 3 0.05
45 15 0.26
46 13 0.22
47 3 0.05
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (44 bp):
ATTATATATATATAATATATTAACTATACATTTATATATAAATA
Found at i:86679 original size:16 final size:16
Alignment explanation
Indices: 86625--86692 Score: 57
Period size: 16 Copynumber: 3.9 Consensus size: 16
86615 ATATAATATA
*
86625 ATTAATTATAATTTATAA
1 ATTAATTATAA-TTA-AT
*
86643 ATATAATTATTATTATAAT
1 AT-TAATTA-TAAT-TAAT
86662 ATT-ATTATAAATTAAT
1 ATTAATTAT-AATTAAT
86678 ATTAATTATAATTAA
1 ATTAATTATAATTAA
86693 AAATTATTAA
Statistics
Matches: 42, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
16 14 0.33
17 11 0.26
18 3 0.07
19 10 0.24
20 4 0.10
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTAATTATAATTAAT
Found at i:86684 original size:47 final size:47
Alignment explanation
Indices: 86544--86688 Score: 133
Period size: 47 Copynumber: 3.1 Consensus size: 47
86534 TATTAACAAA
* * * *
86544 TTATAACTATTATTATTATTATATATAATAATATATTAA-ACTATACAT
1 TTATAAATATAATTATTATTATATATTATAATAAATTAATA-TATA-AT
* *
86592 TTAT--ATATAAATAATA-TATATATATATAATATAATTAAT-TATAAT
1 TTATAAATATAATTATTATTATATAT-TATAATA-AATTAATATATAAT
*
86637 TTATAAATATAATTATTATTATAATATTATTATAAATTAATAT-TAA-
1 TTATAAATATAATTATTATTAT-ATATTATAATAAATTAATATATAAT
86683 TTATAA
1 TTATAA
86689 TTAAAAATTA
Statistics
Matches: 80, Mismatches: 9, Indels: 18
0.75 0.08 0.17
Matches are distributed among these distances:
45 13 0.16
46 24 0.30
47 25 0.31
48 14 0.17
49 4 0.05
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (47 bp):
TTATAAATATAATTATTATTATATATTATAATAAATTAATATATAAT
Found at i:86723 original size:53 final size:51
Alignment explanation
Indices: 86625--86754 Score: 129
Period size: 53 Copynumber: 2.5 Consensus size: 51
86615 ATATAATATA
* * *
86625 ATTAATTATAATTTATAAATATAATTATTATTATAATATTATTATAAATTA-AT
1 ATTAATTATAA-TTA-AAA-ATTATTACTATAATAATATTATTATAAATTACAT
**
86678 ATTAATTATAATTAAAAATTATTAACTATAATAATATGTATTTATATTTTACAT
1 ATTAATTATAATTAAAAATTATT-ACTATAATAATAT-TA-TTATAAATTACAT
*
86732 ATTAATATATAA-TAAAATTTATT
1 ATTAAT-TATAATTAAAAATTATT
86755 TATTTTAAAC
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
50 5 0.08
51 14 0.21
52 5 0.08
53 19 0.29
54 18 0.27
55 5 0.08
ACGTcount: A:0.48, C:0.02, G:0.01, T:0.49
Consensus pattern (51 bp):
ATTAATTATAATTAAAAATTATTACTATAATAATATTATTATAAATTACAT
Found at i:86770 original size:35 final size:34
Alignment explanation
Indices: 86696--86771 Score: 82
Period size: 35 Copynumber: 2.2 Consensus size: 34
86686 TAATTAAAAA
* * *
86696 TTATTAACTATAATAATATGTATTTATATTTTAC
1 TTATTAAATATAATAAAATGTATTTATATTTAAC
* *
86730 ATATTAATATATAATAAAATTTATTTAT-TTTAAAC
1 TTATTAA-ATATAATAAAATGTATTTATATTT-AAC
86765 TTATTAA
1 TTATTAA
86772 GGTTAATTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
34 9 0.26
35 25 0.74
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.51
Consensus pattern (34 bp):
TTATTAAATATAATAAAATGTATTTATATTTAAC
Found at i:86818 original size:16 final size:16
Alignment explanation
Indices: 86777--86828 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
86767 ATTAAGGTTA
*
86777 ATTATATAATTA-AAT
1 ATTATATTATTATAAT
86792 ATTA-A--ATTATAAT
1 ATTATATTATTATAAT
86805 ATTATATTATTATAA-
1 ATTATATTATTATAAT
86820 ATATATATT
1 AT-TATATT
86829 TATATTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
12 4 0.12
13 7 0.22
14 2 0.06
15 6 0.19
16 13 0.41
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTATATTATTATAAT
Found at i:86841 original size:16 final size:16
Alignment explanation
Indices: 86817--86870 Score: 63
Period size: 17 Copynumber: 3.2 Consensus size: 16
86807 TATATTATTA
86817 TAAATATATATTTATAT
1 TAAA-ATATATTTATAT
*
86834 TAAAATATATTTATAAA
1 TAAAATATATTTAT-AT
*
86851 TAAATTAATATTTATAT
1 TAAAAT-ATATTTATAT
86868 TAA
1 TAA
86871 TAATTAATTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 10 0.31
17 14 0.44
18 8 0.25
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAAAATATATTTATAT
Found at i:86869 original size:12 final size:12
Alignment explanation
Indices: 86828--86932 Score: 87
Period size: 12 Copynumber: 9.0 Consensus size: 12
86818 AAATATATAT
86828 TTATATTAA-AA
1 TTATATTAATAA
*
86839 -TATATTTATAA
1 TTATATTAATAA
* * *
86850 ATAAATTAATAT
1 TTATATTAATAA
86862 TTATATTAATAA
1 TTATATTAATAA
86874 TTA-ATTAATAA
1 TTATATTAATAA
*
86885 CTTA-ATTATTAA
1 -TTATATTAATAA
86897 -TATTATT-ATAA
1 TTA-TATTAATAA
*
86908 TTATATTATTTAA
1 TTATATTA-ATAA
86921 TTATATTAATAA
1 TTATATTAATAA
86933 ATTTATAATT
Statistics
Matches: 75, Mismatches: 11, Indels: 15
0.74 0.11 0.15
Matches are distributed among these distances:
10 9 0.12
11 17 0.23
12 38 0.51
13 11 0.15
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (12 bp):
TTATATTAATAA
Found at i:87494 original size:21 final size:20
Alignment explanation
Indices: 87435--87494 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 20
87425 AAAAAAACAA
*
87435 ATTA-TAATAAAATTATTA-
1 ATTATTAATAAAATAATTAT
87453 ATTATTAA-AAAATAATT-T
1 ATTATTAATAAAATAATTAT
87471 ATTATTAATAATAATAATTAT
1 ATTATTAATAA-AATAATTAT
87492 ATT
1 ATT
87495 TATAATTTAA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
18 20 0.56
19 5 0.14
20 7 0.19
21 4 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTATTAATAAAATAATTAT
Found at i:88123 original size:14 final size:14
Alignment explanation
Indices: 88104--88131 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
88094 ATTATGACTA
88104 ATAATAATTTAATT
1 ATAATAATTTAATT
88118 ATAATAATTTAATT
1 ATAATAATTTAATT
88132 TTGAAAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATAATAATTTAATT
Found at i:88294 original size:6 final size:6
Alignment explanation
Indices: 88294--88334 Score: 50
Period size: 6 Copynumber: 6.8 Consensus size: 6
88284 TTTATAATTA
88294 TATAAT TATAA- T-TAAT TATAATT TATAAT TATTAAT TATAA
1 TATAAT TATAAT TATAAT TATAA-T TATAAT TA-TAAT TATAA
88335 ATTTAATACT
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
4 3 0.10
5 2 0.06
6 14 0.45
7 12 0.39
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (6 bp):
TATAAT
Found at i:88311 original size:10 final size:10
Alignment explanation
Indices: 88288--88334 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
88278 AATATTTTTA
88288 TAATTAT-A-
1 TAATTATAAT
88296 TAATTATAAT
1 TAATTATAAT
88306 TAATTATAAT
1 TAATTATAAT
* * *
88316 TTATAATTAT
1 TAATTATAAT
88326 TAATTATAA
1 TAATTATAA
88335 ATTTAATACT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
8 7 0.23
9 1 0.03
10 23 0.74
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (10 bp):
TAATTATAAT
Found at i:88312 original size:24 final size:24
Alignment explanation
Indices: 88285--88331 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
88275 AATAATATTT
88285 TTATAATTATATAATTA-TAATTAA
1 TTATAATT-TATAATTATTAATTAA
88309 TTATAATTTATAATTATTAATTA
1 TTATAATTTATAATTATTAATTA
88332 TAAATTTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TTATAATTTATAATTATTAATTAA
Found at i:88354 original size:21 final size:21
Alignment explanation
Indices: 88304--88354 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
88294 TATAATTATA
*
88304 ATTAATTAT-AATTTATAATT
1 ATTAAATATAAATTTATAATT
* *
88324 ATTAATTATAAATTTAATACTT
1 ATTAAATATAAATTT-ATAATT
88346 A-TAAATATA
1 ATTAAATATA
88355 GTTAATAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 9 0.33
21 12 0.44
22 6 0.22
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (21 bp):
ATTAAATATAAATTTATAATT
Found at i:89672 original size:7 final size:7
Alignment explanation
Indices: 89655--89683 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
89645 TAATTATTTT
89655 ATTAA-A
1 ATTAATA
89661 ATTAATA
1 ATTAATA
89668 ATTAATA
1 ATTAATA
89675 ATTAATA
1 ATTAATA
89682 AT
1 AT
89684 AGATCTAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.23
7 17 0.77
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
ATTAATA
Found at i:89782 original size:27 final size:28
Alignment explanation
Indices: 89715--89782 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 28
89705 TTAGATATCT
89715 AATAATTA-ATA-AAAATCAATACTTAA
1 AATAATTATATATAAAATCAATACTTAA
* *
89741 AAT-ATT-TAAACTAAAATCAATA-TTCA
1 AATAATTATATA-TAAAATCAATACTTAA
89767 AATAATTATATATAAA
1 AATAATTATATATAAA
89783 TTTTATTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
25 5 0.15
26 9 0.26
27 17 0.50
28 3 0.09
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (28 bp):
AATAATTATATATAAAATCAATACTTAA
Found at i:89783 original size:26 final size:25
Alignment explanation
Indices: 89715--89783 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 25
89705 TTAGATATCT
89715 AATAATTAATAAAAATCAATACTTAA
1 AATAATTAAT-AAAATCAATACTTAA
* *
89741 AATATTTAAACTAAAATCAATA-TTCA
1 AATAATT-AA-TAAAATCAATACTTAA
89767 AATAATTATATATAAAT
1 AATAATTA-ATA-AAAT
89784 TTTATTGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
25 3 0.08
26 20 0.56
27 12 0.33
28 1 0.03
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (25 bp):
AATAATTAATAAAATCAATACTTAA
Found at i:90030 original size:6 final size:6
Alignment explanation
Indices: 90019--90057 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
90009 AATAAAAAGC
* *
90019 TTAATA TTAATA TCAATA TTAA-A TTAGTA TTAATA TTAA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAA
90058 ACAATATTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 4 0.14
6 24 0.86
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (6 bp):
TTAATA
Found at i:90053 original size:17 final size:17
Alignment explanation
Indices: 90019--90058 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
90009 AATAAAAAGC
90019 TTAATATTAATATCAATA
1 TTAA-ATTAATATCAATA
* *
90037 TTAAATTAGTATTAATA
1 TTAAATTAATATCAATA
90054 TTAAA
1 TTAAA
90059 CAATATTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 16 0.80
18 4 0.20
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (17 bp):
TTAAATTAATATCAATA
Found at i:90204 original size:13 final size:13
Alignment explanation
Indices: 90164--90204 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
90154 TAATTGAAAG
90164 TTAATTA-AAATAA
1 TTAATTATAAAT-A
*
90177 TTAATTATAATTA
1 TTAATTATAAATA
90190 TTAATTATAAATA
1 TTAATTATAAATA
90203 TT
1 TT
90205 TGTTTTATGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 22 0.88
14 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TTAATTATAAATA
Found at i:90377 original size:12 final size:12
Alignment explanation
Indices: 90353--90394 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
90343 TAAAAAAATA
90353 ATATTATATTATT
1 ATATTA-ATTATT
90366 ATATTAATTATT
1 ATATTAATTATT
* *
90378 ATAATAACTATT
1 ATATTAATTATT
90390 -TATTA
1 ATATTA
90395 CAAATTCCAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
11 4 0.15
12 16 0.62
13 6 0.23
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (12 bp):
ATATTAATTATT
Found at i:92495 original size:14 final size:13
Alignment explanation
Indices: 92477--92589 Score: 58
Period size: 14 Copynumber: 8.6 Consensus size: 13
92467 AAAATATAAA
92477 TATAATTATATAT
1 TATAATTATATAT
92490 TAATAATTATTATAT
1 T-ATAATTA-TATAT
*
92505 TATAAAT-TATAT
1 TATAATTATATAT
*
92517 TA-AATTAAATAT
1 TATAATTATATAT
*
92529 TCA-AATAATATAT
1 T-ATAATTATATAT
*
92542 T-T-ACTATA-AT
1 TATAATTATATAT
* *
92552 TATTAATAATATAAA
1 TA-TAATTATAT-AT
*
92567 TATAAATATAATAT
1 TATAATTAT-ATAT
92581 TATTAATTA
1 TA-TAATTA
92590 ATAACAAATA
Statistics
Matches: 74, Mismatches: 14, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
10 3 0.04
11 7 0.09
12 13 0.18
13 15 0.20
14 20 0.27
15 16 0.22
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
TATAATTATATAT
Found at i:92638 original size:21 final size:21
Alignment explanation
Indices: 92614--92657 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
92604 TTAAATATTT
92614 TAATAATAATATCATA-TATAA
1 TAATAATAAT-TCATATTATAA
* *
92635 TAATTATAATTGATATTATAA
1 TAATAATAATTCATATTATAA
92656 TA
1 TA
92658 TATATTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
TAATAATAATTCATATTATAA
Found at i:92662 original size:12 final size:12
Alignment explanation
Indices: 92477--92668 Score: 53
Period size: 12 Copynumber: 16.4 Consensus size: 12
92467 AAAATATAAA
92477 TATAATTATATAT
1 TATAA-TATATAT
92490 TAATAATTATTATAT
1 T-ATAA-TA-TATAT
92505 TATAA-ATTATAT
1 TATAATA-TATAT
*
92517 TA-AATTAAATAT
1 TATAA-TATATAT
92529 TCA-AATAATATAT
1 T-ATAAT-ATATAT
*
92542 T-TACTATA-AT
1 TATAATATATAT
92552 TATTAATA-ATA-
1 TA-TAATATATAT
*
92563 TA-AATATA-AA
1 TATAATATATAT
92573 TATAATAT-TAT
1 TATAATATATAT
* *
92584 TA-ATTA-ATAA
1 TATAATATATAT
*
92594 CA-AATAT-TAT
1 TATAATATATAT
*
92604 T-TAA-ATATTT
1 TATAATATATAT
92614 TAATAATA-ATAT
1 T-ATAATATATAT
*
92626 CAT-ATATAATAAT
1 TATAATAT-AT-AT
92639 TATAAT-TGATAT
1 TATAATAT-ATAT
92651 TATAATATATATT
1 TATAATATATA-T
92664 TATAA
1 TATAA
92669 ATTACTATAA
Statistics
Matches: 136, Mismatches: 16, Indels: 54
0.66 0.08 0.26
Matches are distributed among these distances:
9 7 0.05
10 25 0.18
11 18 0.13
12 41 0.30
13 26 0.19
14 13 0.10
15 6 0.04
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (12 bp):
TATAATATATAT
Found at i:92949 original size:13 final size:12
Alignment explanation
Indices: 92931--92961 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
92921 ATTTACTATA
92931 ATATATATAATCT
1 ATATATATAAT-T
92944 ATATATATAATT
1 ATATATATAATT
92956 ATATAT
1 ATATAT
92962 TATATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATATATAATT
Found at i:92965 original size:13 final size:13
Alignment explanation
Indices: 92931--93056 Score: 51
Period size: 13 Copynumber: 9.9 Consensus size: 13
92921 ATTTACTATA
92931 ATATA-TATAATCT
1 ATATATTATAAT-T
92944 ATATA-TATAATT
1 ATATATTATAATT
92956 ATATATTAT-A-T
1 ATATATTATAATT
*
92967 ATA-AATA-AATT
1 ATATATTATAATT
*
92978 AT-TATTATATTT
1 ATATATTATAATT
*
92990 ATTAAATTA-AATT
1 A-TATATTATAATT
*
93003 ATTAAATTAT-ATT
1 A-TATATTATAATT
93016 A-A-ATTATTAATT
1 ATATATTA-TAATT
93028 AATAATATTAATTAATT
1 -AT-ATATT-A-TAATT
93045 ATAATATT-TAAT
1 AT-ATATTATAAT
93057 ATTAAGTATT
Statistics
Matches: 93, Mismatches: 5, Indels: 30
0.73 0.04 0.23
Matches are distributed among these distances:
10 8 0.09
11 12 0.13
12 14 0.15
13 36 0.39
14 4 0.04
15 1 0.01
16 11 0.12
17 7 0.08
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (13 bp):
ATATATTATAATT
Found at i:92974 original size:21 final size:21
Alignment explanation
Indices: 92928--92987 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
92918 CTTATTTACT
* * *
92928 ATAATATATATAATCTATATAT
1 ATAAT-TATATATTATATATAA
92950 ATAATTATATATTATATATAA
1 ATAATTATATATTATATATAA
92971 ATAAATTAT-TATTATAT
1 AT-AATTATATATTATAT
92988 TTATTAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 23 0.68
22 11 0.32
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
ATAATTATATATTATATATAA
Found at i:92981 original size:25 final size:24
Alignment explanation
Indices: 92953--93019 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 24
92943 TATATATATA
92953 ATTATATATTATATATAAATAAATT
1 ATTATATATTATAT-TAAATAAATT
92978 ATTATTATATT-TATTAAATTAAATT
1 ATTA-TATATTATATTAAA-TAAATT
93003 ATTA-A-ATTATATTAAAT
1 ATTATATATTATATTAAAT
93020 TATTAATTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
22 4 0.10
23 8 0.21
24 4 0.10
25 17 0.44
26 6 0.15
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (24 bp):
ATTATATATTATATTAAATAAATT
Found at i:92984 original size:28 final size:25
Alignment explanation
Indices: 92953--93015 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 25
92943 TATATATATA
92953 ATTATATATTATATATAAATAAATTATT
1 ATTATAT-TTAT-TA-AAATAAATTATT
*
92981 ATTATATTTATTAAATTAAATTATT
1 ATTATATTTATTAAAATAAATTATT
93006 AAATTATATT
1 --ATTATATT
93016 AAATTATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 11 0.34
26 2 0.06
27 12 0.38
28 7 0.22
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTATATTTATTAAAATAAATTATT
Found at i:93016 original size:18 final size:18
Alignment explanation
Indices: 92990--93029 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
92980 TATTATATTT
92990 ATTAAATTAAATTATTAA
1 ATTAAATTAAATTATTAA
*
93008 ATTATATTAAATTATT-A
1 ATTAAATTAAATTATTAA
93025 ATTAA
1 ATTAA
93030 TAATATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
ATTAAATTAAATTATTAA
Found at i:93027 original size:25 final size:25
Alignment explanation
Indices: 92951--93046 Score: 80
Period size: 25 Copynumber: 4.0 Consensus size: 25
92941 TCTATATATA
* *
92951 TAATTA-TATATTATATATAAATAAAT
1 TAATTATTAAATTATAT-TAAAT-TAT
*
92977 T-ATTATTATATT-TATTAAATTA-
1 TAATTATTAAATTATATTAAATTAT
92999 -AATTATTAAATTATATTAAATTAT
1 TAATTATTAAATTATATTAAATTAT
*
93023 TAATTAATAATATTA-ATT-AATTAT
1 TAATTATTAA-ATTATATTAAATTAT
93047 AATATTTAAT
Statistics
Matches: 61, Mismatches: 3, Indels: 14
0.78 0.04 0.18
Matches are distributed among these distances:
22 10 0.16
23 11 0.18
24 11 0.18
25 18 0.30
26 11 0.18
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (25 bp):
TAATTATTAAATTATATTAAATTAT
Found at i:93041 original size:17 final size:16
Alignment explanation
Indices: 93021--93093 Score: 61
Period size: 15 Copynumber: 4.8 Consensus size: 16
93011 ATATTAAATT
93021 ATTAATTAATAATATTA
1 ATTAATT-ATAATATTA
93038 ATTAATTATAATATTTA
1 ATTAATTATAATA-TTA
*
93055 A-T-ATTA-AGTATT-
1 ATTAATTATAATATTA
93067 ATTACA--ATAATATTA
1 ATTA-ATTATAATATTA
93082 ATTAA-TATAATA
1 ATTAATTATAATA
93094 CTAAGTAAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 16
0.72 0.03 0.25
Matches are distributed among these distances:
12 1 0.02
13 4 0.09
14 9 0.19
15 15 0.32
16 7 0.15
17 11 0.23
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (16 bp):
ATTAATTATAATATTA
Found at i:93331 original size:17 final size:17
Alignment explanation
Indices: 93270--93336 Score: 59
Period size: 17 Copynumber: 4.0 Consensus size: 17
93260 AATTATAATT
* *
93270 ATAATTATAATAATAATA
1 ATAATTA-AATATTAGTA
*
93288 ATATTTAAATA-T-GTA
1 ATAATTAAATATTAGTA
*
93303 TTAA-TAATATATTAGTA
1 ATAATTAA-ATATTAGTA
93320 ATAATTAAATATTAGTA
1 ATAATTAAATATTAGTA
93337 TATTATATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 2 0.05
17 19 0.47
18 9 0.22
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.43
Consensus pattern (17 bp):
ATAATTAAATATTAGTA
Found at i:93345 original size:32 final size:33
Alignment explanation
Indices: 93279--93358 Score: 87
Period size: 32 Copynumber: 2.5 Consensus size: 33
93269 TATAATTATA
* *
93279 ATAA-TAATAATATTTAAATATGTATTAATAAT
1 ATAATTAATAATAATTAAATATGTAGTAATAAT
* *
93311 AT-ATTAGTAATAATTAAATAT-TAGTATATTAT
1 ATAATTAATAATAATTAAATATGTAGTA-ATAAT
93343 ATAATTAAT-ATAATTA
1 ATAATTAATAATAATTA
93359 TAATTTTATA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
31 5 0.12
32 30 0.75
33 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (33 bp):
ATAATTAATAATAATTAAATATGTAGTAATAAT
Found at i:93519 original size:15 final size:16
Alignment explanation
Indices: 93486--93524 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
93476 GTTTTTTTGG
**
93486 TATTTTTTATGTTTTT
1 TATTTTTTATGTTGCT
93502 TATTTTTTATG-TGCT
1 TATTTTTTATGTTGCT
93517 TATTTTTT
1 TATTTTTT
93525 CCCTTAGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.77
Consensus pattern (16 bp):
TATTTTTTATGTTGCT
Found at i:94531 original size:21 final size:23
Alignment explanation
Indices: 94490--94535 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
94480 TATATTATCC
94490 ATTAATAACTATAATTATTAATA
1 ATTAATAACTATAATTATTAATA
94513 ATTAA-AA-TATATATT-TTAATA
1 ATTAATAACTATA-ATTATTAATA
94534 AT
1 AT
94536 ATTAATTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
21 12 0.55
22 5 0.23
23 5 0.23
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
ATTAATAACTATAATTATTAATA
Found at i:94569 original size:17 final size:17
Alignment explanation
Indices: 94527--94580 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
94517 AAATATATAT
* *
94527 TTTAATAATATTAATTAA
1 TTTAATATTATT-ATAAA
*
94545 -TTAGTATTATTATAAA
1 TTTAATATTATTATAAA
94561 TTTAATATTA-TATAAA
1 TTTAATATTATTATAAA
94577 TTTA
1 TTTA
94581 TTTAAAAAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (17 bp):
TTTAATATTATTATAAA
Found at i:94574 original size:16 final size:16
Alignment explanation
Indices: 94532--94580 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
94522 TATATTTTAA
*
94532 TAATATTA-ATTAA-T
1 TAATATTATATAAATT
*
94546 TAGTATTATTATAAATT
1 TAATATTA-TATAAATT
94563 TAATATTATATAAATT
1 TAATATTATATAAATT
94579 TA
1 TA
94581 TTTAAAAAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
14 7 0.24
16 14 0.48
17 8 0.28
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (16 bp):
TAATATTATATAAATT
Found at i:94911 original size:35 final size:36
Alignment explanation
Indices: 94859--94931 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 36
94849 TGTTATTTAT
*
94859 TAATCTAAGTAATTAATAGTTATTATATT-TTATTA
1 TAATCTAAGTAATTAATAATTATTATATTATTATTA
*
94894 TAAT-TAAGTAAATTAATAATTATTTTATTATTATTA
1 TAATCTAAGT-AATTAATAATTATTATATTATTATTA
94930 TA
1 TA
94932 TTACAAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
34 5 0.15
35 21 0.62
36 8 0.24
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.52
Consensus pattern (36 bp):
TAATCTAAGTAATTAATAATTATTATATTATTATTA
Found at i:96107 original size:7 final size:7
Alignment explanation
Indices: 96095--96150 Score: 58
Period size: 7 Copynumber: 7.3 Consensus size: 7
96085 ATTCTTTCAT
96095 TTTTTTC
1 TTTTTTC
96102 TTTTTTC
1 TTTTTTC
*
96109 TTTTTCC
1 TTTTTTC
96116 TTTTCTTTCC
1 -TTT-TTT-C
96126 TTTTTTC
1 TTTTTTC
96133 TCTTTTTCC
1 T-TTTTT-C
96142 TTTTTTC
1 TTTTTTC
96149 TT
1 TT
96151 CTTATTTTCA
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
7 18 0.43
8 16 0.38
9 7 0.17
10 1 0.02
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTTC
Found at i:96122 original size:32 final size:33
Alignment explanation
Indices: 96060--96146 Score: 104
Period size: 32 Copynumber: 2.6 Consensus size: 33
96050 TTGAGTATTC
* * *
96060 TTTTTCTCTCATTTTACATTTTCCTATTCTTTCA
1 TTTTT-TCTCTTTTTCCTTTTTCCTATTCTTTCA
* * *
96094 TTTTTT-TCTTTTTTCTTTTTCCTTTTCTTTCC
1 TTTTTTCTCTTTTTCCTTTTTCCTATTCTTTCA
96126 TTTTTTCTCTTTTTCCTTTTT
1 TTTTTTCTCTTTTTCCTTTTT
96147 TCTTCTTATT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
32 27 0.59
33 14 0.30
34 5 0.11
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (33 bp):
TTTTTTCTCTTTTTCCTTTTTCCTATTCTTTCA
Found at i:96140 original size:16 final size:16
Alignment explanation
Indices: 96089--96149 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
96079 TTTCCTATTC
*
96089 TTTCATTTTTT-TCTT
1 TTTCCTTTTTTCTCTT
* * *
96104 TTTTCTTTTTCCTTTT
1 TTTCCTTTTTTCTCTT
96120 CTTTCCTTTTTTCTCTT
1 -TTTCCTTTTTTCTCTT
96137 TTTCCTTTTTTCT
1 TTTCCTTTTTTCT
96150 TCTTATTTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
15 8 0.22
16 16 0.43
17 13 0.35
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTCCTTTTTTCTCTT
Found at i:96539 original size:24 final size:24
Alignment explanation
Indices: 96512--96563 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
96502 ATCCATTTAT
96512 CTTTTCTCTCTTTCTTTT-ATTTTG
1 CTTTTCTCTCTTT-TTTTCATTTTG
* * *
96536 CTTTTTTTTCTTTTTTTCCTTTTG
1 CTTTTCTCTCTTTTTTTCATTTTG
96560 CTTT
1 CTTT
96564 ATATCTTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.17
24 20 0.83
ACGTcount: A:0.02, C:0.19, G:0.04, T:0.75
Consensus pattern (24 bp):
CTTTTCTCTCTTTTTTTCATTTTG
Found at i:97276 original size:108 final size:108
Alignment explanation
Indices: 97084--97300 Score: 328
Period size: 108 Copynumber: 2.0 Consensus size: 108
97074 AAAAAAATCC
* *
97084 TAACATTACTATGAAAGAAATCTATAATGACAAGTAGCTTCAAACCAGCCTTAACATCATTTTCA
1 TAACATTACTATGAAAGAAATCTAGAATGACAAGCAGCTTCAAACCAGCCTTAACATCATTTTCA
* * *
97149 AAATTATGCCCCTGAGCAATCGGGTGAAAGATTTTTATTGACA
66 AAATTATGCCCATGAGCAATCAGATGAAAGATTTTTATTGACA
* *
97192 TAACATTATTATGAAAGAAATCTAGAATGACAAGCAGCTTCTAACCAGCCTTAACATTC-TTTTC
1 TAACATTACTATGAAAGAAATCTAGAATGACAAGCAGCTTCAAACCAGCCTTAACA-TCATTTTC
* * *
97256 AAAATTATGCCCATGTGCAATTAGATGAAGGATTTTTATTGACA
65 AAAATTATGCCCATGAGCAATCAGATGAAAGATTTTTATTGACA
97300 T
1 T
97301 CTTGCCTCCT
Statistics
Matches: 98, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
108 96 0.98
109 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.14, T:0.31
Consensus pattern (108 bp):
TAACATTACTATGAAAGAAATCTAGAATGACAAGCAGCTTCAAACCAGCCTTAACATCATTTTCA
AAATTATGCCCATGAGCAATCAGATGAAAGATTTTTATTGACA
Found at i:98846 original size:30 final size:29
Alignment explanation
Indices: 98786--98846 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
98776 TTATTTATTT
** *
98786 AAATATATATTAATATATTATGTTATATA
1 AAATATATATTAATATATTATAATAAATA
* *
98815 AAATATCTAGTTATTATATTATAATAAATA
1 AAATATATA-TTAATATATTATAATAAATA
98845 AA
1 AA
98847 CAAGTTAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
29 8 0.31
30 18 0.69
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (29 bp):
AAATATATATTAATATATTATAATAAATA
Found at i:99004 original size:25 final size:25
Alignment explanation
Indices: 98951--99005 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
98941 AGTTATTATT
98951 TTATTATTAATAATATTAATCAATA
1 TTATTATTAATAATATTAATCAATA
98976 -TATTAGTTAATAAT-TTAAAT-AATA
1 TTATTA-TTAATAATATT-AATCAATA
99000 TTATTA
1 TTATTA
99006 AACAAATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 11 0.41
25 16 0.59
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (25 bp):
TTATTATTAATAATATTAATCAATA
Found at i:99078 original size:15 final size:15
Alignment explanation
Indices: 99054--99103 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 15
99044 GTTACTAAAG
99054 TATA-TTATAATTAA
1 TATATTTATAATTAA
99068 TATATTTATAATTAA
1 TATATTTATAATTAA
99083 TTATAATTATACTAATTAA
1 -TAT-ATT-TA-TAATTAA
99102 TA
1 TA
99104 AGAATTAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
14 4 0.13
15 10 0.32
16 3 0.10
17 3 0.10
18 4 0.13
19 7 0.23
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATATTTATAATTAA
Found at i:99085 original size:19 final size:19
Alignment explanation
Indices: 99061--99102 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
99051 AAGTATATTA
99061 TAATTAA-TAT-ATT-TA-
1 TAATTAATTATAATTATAC
99076 TAATTAATTATAATTATAC
1 TAATTAATTATAATTATAC
99095 TAATTAAT
1 TAATTAAT
99103 AAGAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 3 0.13
17 3 0.13
18 2 0.09
19 8 0.35
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (19 bp):
TAATTAATTATAATTATAC
Found at i:99658 original size:11 final size:11
Alignment explanation
Indices: 99644--99671 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
99634 TTAGTATTAA
99644 TAATTAATAAT
1 TAATTAATAAT
99655 TAATTAATAAT
1 TAATTAATAAT
99666 TAATTA
1 TAATTA
99672 TATTCTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (11 bp):
TAATTAATAAT
Found at i:99799 original size:24 final size:24
Alignment explanation
Indices: 99755--99812 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 24
99745 ATTTTTGAAA
*
99755 AATATATAATAAATTTTATTATAACT
1 AATA-ATAATAAATTTGATTA-AACT
*
99781 AATAATAAT-AATTTGATTAAATT
1 AATAATAATAAATTTGATTAAACT
99804 ATATAATAA
1 A-ATAATAA
99813 AATAGCTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 4 0.14
24 16 0.55
25 5 0.17
26 4 0.14
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (24 bp):
AATAATAATAAATTTGATTAAACT
Found at i:100234 original size:16 final size:16
Alignment explanation
Indices: 100213--100276 Score: 78
Period size: 16 Copynumber: 4.0 Consensus size: 16
100203 TGAAATTTAA
*
100213 TATATTATTAACTATT
1 TATATTATTAAATATT
100229 TATATTATTAAATA-T
1 TATATTATTAAATATT
*
100244 TATATTAATAACATATT
1 TATATTATTAA-ATATT
100261 TAATATT-TTAAATATT
1 T-ATATTATTAAATATT
100277 AAAATAATTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
15 11 0.26
16 21 0.50
17 5 0.12
18 5 0.12
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
TATATTATTAAATATT
Found at i:100272 original size:32 final size:31
Alignment explanation
Indices: 100213--100277 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 31
100203 TGAAATTTAA
*
100213 TATATTATTAACTATTTATATTATTAAATAT
1 TATATTAATAACTATTTATATTATTAAATAT
100244 TATATTAATAACATATTTAATATT-TTAAATAT
1 TATATTAATAAC-TATTT-ATATTATTAAATAT
100276 TA
1 TA
100278 AAATAATTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
31 11 0.35
32 15 0.48
33 5 0.16
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (31 bp):
TATATTAATAACTATTTATATTATTAAATAT
Found at i:100781 original size:11 final size:11
Alignment explanation
Indices: 100765--100790 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
100755 GCTTAGATTG
100765 ATTATATTTTA
1 ATTATATTTTA
100776 ATTATATTTTA
1 ATTATATTTTA
100787 ATTA
1 ATTA
100791 ACTATATAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTATATTTTA
Found at i:100947 original size:18 final size:18
Alignment explanation
Indices: 100926--100969 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
100916 AATATATTGT
*
100926 ATATTTAAAATAACT-TAA
1 ATATTTAAAATAAATAT-A
100944 ATATTT-AAATAAATATA
1 ATATTTAAAATAAATATA
100961 ATATTTAAA
1 ATATTTAAA
100970 TACATTACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 14 0.61
18 9 0.39
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (18 bp):
ATATTTAAAATAAATATA
Found at i:101060 original size:16 final size:16
Alignment explanation
Indices: 101041--101075 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
101031 ATTGATAATA
101041 ATTAAACTAA-ATTATT
1 ATTAAA-TAATATTATT
101057 ATTAAATAATATTATT
1 ATTAAATAATATTATT
101073 ATT
1 ATT
101076 TGAACATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.17
16 15 0.83
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
ATTAAATAATATTATT
Found at i:101108 original size:22 final size:22
Alignment explanation
Indices: 101066--101108 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
101056 TATTAAATAA
*
101066 TATTATTATTTGAACATTTAAC
1 TATTATTATTTGAACAATTAAC
*
101088 TATTAGTTATTT-AATAATTAA
1 TATTA-TTATTTGAACAATTAA
101109 ACTTTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.40, C:0.05, G:0.05, T:0.51
Consensus pattern (22 bp):
TATTATTATTTGAACAATTAAC
Found at i:101141 original size:26 final size:24
Alignment explanation
Indices: 101112--101179 Score: 64
Period size: 26 Copynumber: 2.7 Consensus size: 24
101102 TAATTAAACT
101112 TTAATTAAATATAAATTAAATAATAG
1 TTAATTAAATATAAATTAAAT-A-AG
* * * *
101138 TTAATTAGATATTAGTTTAATAAG
1 TTAATTAAATATAAATTAAATAAG
*
101162 TTAATTAATTATATAATT
1 TTAATTAAATATA-AATT
101180 GTTTAATTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
24 12 0.36
25 4 0.12
26 17 0.52
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (24 bp):
TTAATTAAATATAAATTAAATAAG
Found at i:101438 original size:21 final size:23
Alignment explanation
Indices: 101412--101461 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
101402 TTGTTTTTAT
101412 TAATTACAATA-ACTAATAT-TA
1 TAATTACAATATACTAATATATA
* * *
101433 TAATTATAATATAGTATTATATA
1 TAATTACAATATACTAATATATA
101456 TAATTA
1 TAATTA
101462 TAAGTTAATC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 10 0.42
22 6 0.25
23 8 0.33
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (23 bp):
TAATTACAATATACTAATATATA
Found at i:101579 original size:16 final size:15
Alignment explanation
Indices: 101549--101596 Score: 55
Period size: 16 Copynumber: 3.3 Consensus size: 15
101539 TATTAGTAAA
101549 TTATAAAAATATATT
1 TTATAAAAATATATT
*
101564 TTATAATAATTATATT
1 TTATAA-AAATATATT
*
101580 TT-TAAATATAT-TT
1 TTATAAAAATATATT
101593 TTAT
1 TTAT
101597 TATATTTAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
13 4 0.14
14 5 0.18
15 9 0.32
16 10 0.36
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TTATAAAAATATATT
Found at i:101600 original size:11 final size:12
Alignment explanation
Indices: 101570--101603 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
101560 TATTTTATAA
101570 TAATTATATTTT
1 TAATTATATTTT
*
101582 TAAATATATTTT
1 TAATTATATTTT
101594 T-ATTATATTT
1 TAATTATATTT
101604 AAAAATATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 8 0.40
12 12 0.60
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
TAATTATATTTT
Found at i:101957 original size:25 final size:25
Alignment explanation
Indices: 101929--101986 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 25
101919 AAATATTAAT
101929 AAATTAATATTATTTTATTTCGAAC
1 AAATTAATATTATTTTATTTCGAAC
*
101954 --A--AATATTATTTTATTTTGAAC
1 AAATTAATATTATTTTATTTCGAAC
101975 AAACTT-ATATTA
1 AAA-TTAATATTA
101987 ACAAAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
21 19 0.70
23 2 0.07
25 6 0.22
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.48
Consensus pattern (25 bp):
AAATTAATATTATTTTATTTCGAAC
Found at i:101958 original size:21 final size:21
Alignment explanation
Indices: 101934--101977 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
101924 TTAATAAATT
101934 AATATTATTTTATTTCGAACA
1 AATATTATTTTATTTCGAACA
*
101955 AATATTATTTTATTTTGAACA
1 AATATTATTTTATTTCGAACA
101976 AA
1 AA
101978 CTTATATTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.48
Consensus pattern (21 bp):
AATATTATTTTATTTCGAACA
Found at i:102157 original size:28 final size:27
Alignment explanation
Indices: 102084--102180 Score: 74
Period size: 28 Copynumber: 3.4 Consensus size: 27
102074 CTAATAATAT
102084 TATTTAATATTATTT-TATTAATTAAAA
1 TATTTAATATTATTTAT-TTAATTAAAA
* * *
102111 TAATTAATTATTAATTATTTAACTTAATA
1 TATTTAA-TATTATTTATTTAA-TTAAAA
102140 T-TTTAATATTATTATATTTTAA-TAATAA
1 TATTTAATATTATT-TA-TTTAATTAA-AA
*
102168 TATTGAATTATTA
1 TATTTAA-TATTA
102181 ATATTAATAA
Statistics
Matches: 55, Mismatches: 7, Indels: 13
0.73 0.09 0.17
Matches are distributed among these distances:
27 15 0.27
28 19 0.35
29 16 0.29
30 5 0.09
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (27 bp):
TATTTAATATTATTTATTTAATTAAAA
Found at i:102165 original size:27 final size:27
Alignment explanation
Indices: 102075--102192 Score: 77
Period size: 27 Copynumber: 4.3 Consensus size: 27
102065 TTAATATTAC
*
102075 TAATAATATTATTTAATATTATTTTATTAAT
1 TAATAATA-TA-TTAATATTATTATATT--T
*
102106 TAA-AATA-ATTAATTATTAAT-TA-TT
1 TAATAATATATTAA-TATTATTATATTT
*
102130 TAACTTAATATTTTAATATTATTATATTT
1 TAA--TAATATATTAATATTATTATATTT
* *
102159 TAATAATAATATTGA-ATTATTA-ATAT
1 TAATAAT-ATATTAATATTATTATATTT
102185 TAATAATA
1 TAATAATA
102193 ATGGTTGAAT
Statistics
Matches: 73, Mismatches: 6, Indels: 22
0.72 0.06 0.22
Matches are distributed among these distances:
24 4 0.05
25 1 0.01
26 11 0.15
27 27 0.37
28 18 0.25
29 5 0.07
30 4 0.05
31 3 0.04
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.53
Consensus pattern (27 bp):
TAATAATATATTAATATTATTATATTT
Found at i:102379 original size:19 final size:20
Alignment explanation
Indices: 102355--102397 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
102345 AATTAAATAT
102355 AAATAATTGTTAAT-ATTTA
1 AAATAATTGTTAATAATTTA
*
102374 AAATAATTGTTATTAATTTA
1 AAATAATTGTTAATAATTTA
102394 AAAT
1 AAAT
102398 GCTATTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
AAATAATTGTTAATAATTTA
Found at i:102470 original size:28 final size:28
Alignment explanation
Indices: 102439--102496 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 28
102429 AAAATGTTAT
102439 ATTATATAATTATTA-AATAATTTAATTA
1 ATTATATAA-TATTATAATAATTTAATTA
* *
102467 ATTATATTATATTATAATAATTTATTTA
1 ATTATATAATATTATAATAATTTAATTA
102495 AT
1 AT
102497 AGAATATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTATATAATATTATAATAATTTAATTA
Found at i:102668 original size:17 final size:17
Alignment explanation
Indices: 102646--102687 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
102636 TATTAATATA
102646 ATTTATAAATAATGAATT
1 ATTTATAAAT-ATGAATT
* *
102664 A-TTATATATATGTATT
1 ATTTATAAATATGAATT
102680 ATTTATAA
1 ATTTATAA
102688 TTACATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
16 7 0.35
17 12 0.60
18 1 0.05
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (17 bp):
ATTTATAAATATGAATT
Found at i:102923 original size:29 final size:30
Alignment explanation
Indices: 102881--102948 Score: 83
Period size: 29 Copynumber: 2.4 Consensus size: 30
102871 TAATTCATTT
102881 TTAATATCATATATAGTTAT-A-TATA-TATA
1 TTAATAT-ATATATA-TTATAACTATAGTATA
102910 TTAAT-TATATATATTATAACTATAGTATA
1 TTAATATATATATATTATAACTATAGTATA
102939 TTAAT-TATAT
1 TTAATATATAT
102949 TTTATATATT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
26 4 0.11
27 8 0.22
28 5 0.14
29 19 0.53
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (30 bp):
TTAATATATATATATTATAACTATAGTATA
Found at i:102925 original size:9 final size:9
Alignment explanation
Indices: 102884--102957 Score: 50
Period size: 9 Copynumber: 8.2 Consensus size: 9
102874 TTCATTTTTA
*
102884 ATATCATAT
1 ATATTATAT
102893 ATAGTTATAT
1 ATA-TTATAT
102903 ATA-TATAT
1 ATATTATAT
102911 -TAATTATAT
1 AT-ATTATAT
102920 ATATTATAACT
1 ATATTAT-A-T
*
102931 ATAGTATAT
1 ATATTATAT
102940 -TAATTATAT
1 AT-ATTATAT
102949 -T-TTATAT
1 ATATTATAT
102956 AT
1 AT
102958 TAGTTTAATA
Statistics
Matches: 54, Mismatches: 3, Indels: 17
0.73 0.04 0.23
Matches are distributed among these distances:
7 7 0.13
8 8 0.15
9 21 0.39
10 11 0.20
11 7 0.13
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (9 bp):
ATATTATAT
Found at i:102956 original size:29 final size:28
Alignment explanation
Indices: 102889--102948 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 28
102879 TTTTAATATC
102889 ATATATAGTTAT-A-TATATATATTAATT
1 ATATATA-TTATAACTATATATATTAATT
102916 ATATATATTATAACTATAGTATATTAATT
1 ATATATATTATAACTATA-TATATTAATT
102945 ATAT
1 ATAT
102949 TTTATATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
26 4 0.13
27 8 0.27
28 4 0.13
29 14 0.47
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (28 bp):
ATATATATTATAACTATATATATTAATT
Found at i:103410 original size:16 final size:17
Alignment explanation
Indices: 103384--103415 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
103374 AATTGAAGCA
103384 TATGTTATATATATAAT
1 TATGTTATATATATAAT
103401 TATG-TATATATATAA
1 TATGTTATATATATAA
103416 CAATTGATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (17 bp):
TATGTTATATATATAAT
Found at i:103476 original size:17 final size:17
Alignment explanation
Indices: 103441--103480 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
103431 TTAATATCAT
103441 TATTAATAAGGATAATAA
1 TATTAATAA-GATAATAA
103459 TATTAATAA-ATAAATAA
1 TATTAATAAGAT-AATAA
103476 TATTA
1 TATTA
103481 GTTTAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.10
17 10 0.48
18 9 0.43
ACGTcount: A:0.57, C:0.00, G:0.05, T:0.38
Consensus pattern (17 bp):
TATTAATAAGATAATAA
Found at i:104362 original size:21 final size:22
Alignment explanation
Indices: 104332--104396 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
104322 TTATTTCATT
*
104332 ATATGATATTATTATATATTAA
1 ATATTATATTATTATATATTAA
* *
104354 ATATT-TATTATAATATAATAA
1 ATATTATATTATTATATATTAA
*
104375 ATATTATATAATTATATTATTA
1 ATATTATATTATTATA-TATTA
104397 GTTTAATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 19 0.54
22 12 0.34
23 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
ATATTATATTATTATATATTAA
Done.