genome.fa.s65.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167890.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63458

Tables:   1   

This is table  1  of  1  ( 119 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1951--1993	22	2.0	22	81	4	52	62	9	16	11	1.53
8190--8219	3	10.0	3	100	0	60	66	0	0	33	0.92
12214--12238	2	12.5	2	100	0	50	52	0	48	0	1.00
16131--16439	163	1.9	163	93	0	537	35	13	21	28	1.92
20527--20560	7	5.0	7	89	7	52	47	0	0	52	1.00
20527--20560	13	2.5	13	90	4	50	47	0	0	52	1.00
20570--20604	18	1.9	18	88	0	52	68	0	5	25	1.11
20816--20912	49	2.0	49	89	4	151	34	31	8	25	1.86
21876--21911	18	1.9	18	88	5	54	19	11	0	69	1.18
22322--22383	25	2.4	26	78	2	63	14	9	4	70	1.29
23411--23469	9	6.0	10	76	9	59	57	1	0	40	1.09
23411--23470	3	19.7	3	73	10	50	58	1	0	40	1.08
23411--23470	22	2.8	21	78	9	68	58	1	0	40	1.08
23551--23602	12	4.3	13	79	13	58	46	1	0	51	1.12
23552--23638	24	3.8	22	77	13	77	45	1	1	51	1.16
23687--23722	17	2.1	17	90	10	56	50	0	0	50	1.00
23685--23725	14	2.7	14	82	17	55	46	0	0	53	1.00
23688--23753	23	2.7	25	79	13	75	43	0	1	54	1.09
24084--24130	21	2.2	21	84	0	58	36	0	4	59	1.17
24345--24424	20	4.0	20	80	11	74	50	1	0	48	1.08
24335--24426	15	6.2	15	76	17	77	50	1	0	48	1.08
24347--24426	30	2.7	29	83	9	90	50	1	0	48	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24387--24465	28	3.1	24	71	22	63	51	1	0	46	1.08
24371--24481	15	7.9	15	69	22	71	52	0	0	46	1.06
24389--24517	57	2.2	57	81	14	149	49	1	0	48	1.16
24483--24561	18	4.3	18	70	20	58	46	2	1	49	1.23
24980--25040	25	2.4	25	82	12	72	50	0	0	49	1.00
24957--25040	26	3.2	25	80	14	73	51	0	1	47	1.08
25258--25295	20	1.9	20	88	0	58	44	0	0	55	0.99
25668--25721	20	2.8	20	74	2	56	44	0	3	51	1.19
25671--25743	18	4.0	18	73	7	58	47	0	2	49	1.15
26436--26478	13	3.4	13	84	15	63	46	4	0	48	1.22
26456--26564	35	3.1	34	73	20	98	40	0	0	57	1.11
26420--26500	27	3.1	25	81	12	92	44	3	0	51	1.19
26430--26513	27	3.2	26	75	14	82	45	3	0	51	1.18
26508--26565	28	2.0	31	86	10	86	34	0	1	63	1.04
26523--26575	19	2.8	19	86	11	65	32	0	1	66	1.03
26517--26575	28	2.1	29	83	3	75	32	0	3	64	1.10
26804--26852	24	2.0	24	85	14	66	51	2	0	46	1.12
27079--27163	13	6.5	13	76	17	70	51	1	0	47	1.08
27196--27287	14	6.1	15	75	15	75	47	0	1	51	1.07
27241--27277	17	2.1	18	85	14	51	51	0	0	48	1.00
27251--27303	21	2.6	20	85	5	70	58	1	0	39	1.09
27221--27308	21	3.9	23	74	19	69	51	1	0	47	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27393--27456	24	2.6	24	97	2	119	45	0	4	50	1.22
27416--27478	24	3.1	19	84	15	65	41	0	4	53	1.22
27544--27619	20	3.9	20	72	16	61	48	0	0	51	1.00
27548--27590	17	2.5	18	81	7	54	48	0	0	51	1.00
27597--27640	15	2.7	16	82	13	54	50	0	0	50	1.00
27489--27647	24	6.8	24	66	23	81	47	0	1	50	1.13
27594--27751	60	2.7	59	75	14	148	46	1	2	49	1.26
27714--27757	17	2.6	16	82	7	52	50	0	0	50	1.00
27926--27976	18	2.8	19	77	11	54	54	0	0	45	0.99
28206--28259	23	2.3	25	75	21	62	53	0	1	44	1.11
31773--31817	15	2.9	15	83	3	54	15	6	0	77	0.96
31781--31819	7	5.3	7	82	11	51	15	5	0	79	0.90
31754--31853	51	2.0	50	82	2	119	16	6	5	73	1.21
32294--32429	73	1.9	70	83	9	173	17	12	4	65	1.42
32283--32446	76	2.3	69	77	10	175	16	11	3	68	1.34
32438--32487	26	1.9	26	87	0	73	14	6	6	74	1.21
32520--32580	25	2.4	26	81	13	74	18	8	1	72	1.18
32569--32613	17	2.8	17	86	6	58	15	8	0	75	1.03
32587--32675	22	4.2	21	76	13	76	13	5	4	76	1.12
32649--32680	15	2.1	15	94	0	55	12	9	0	78	0.97
32589--32673	43	2.0	44	84	9	113	14	5	4	75	1.15
32622--32687	27	2.5	26	82	9	71	15	4	3	77	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32622--32675	5	10.4	5	77	15	56	16	3	3	75	1.08
32723--32792	20	3.3	20	82	7	77	18	2	4	74	1.11
32853--32900	19	2.5	19	82	3	60	18	4	2	75	1.07
32852--32894	18	2.3	19	80	4	52	18	4	2	74	1.10
33207--33245	17	2.3	17	86	8	53	12	5	2	79	1.00
33214--33272	20	3.0	20	75	9	50	15	3	3	77	1.02
33461--33506	15	3.1	15	83	0	56	13	13	0	73	1.09
33871--33918	22	2.3	21	85	7	62	4	4	4	87	0.74
33872--33940	29	2.4	28	85	7	84	5	5	4	84	0.88
33871--33935	18	3.4	18	83	12	78	6	4	4	84	0.86
33870--33941	19	3.6	21	79	11	71	6	5	5	81	0.97
34276--34532	139	1.8	142	85	5	371	29	5	8	56	1.52
34731--34782	24	2.3	23	83	6	61	3	11	5	78	1.05
34830--34869	21	2.0	20	86	13	57	7	10	0	82	0.84
38225--38275	18	2.8	19	77	11	54	45	0	0	54	0.99
38435--38496	18	3.1	20	75	13	65	53	0	0	46	1.00
38589--38649	25	2.6	24	84	7	72	52	0	0	47	1.00
38869--38924	22	2.6	21	83	8	67	44	0	1	53	1.11
38938--38990	14	3.9	14	80	14	58	54	1	0	43	1.11
39026--39090	12	5.5	12	74	15	55	46	0	0	53	1.00
39001--39086	36	2.3	37	78	11	95	47	0	1	51	1.08
39020--39072	20	2.8	18	81	15	63	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39039--39108	13	5.4	13	75	20	58	48	0	1	50	1.09
39022--39086	19	3.5	19	74	18	64	46	0	0	53	1.00
39457--39507	13	3.3	15	79	20	52	52	1	1	43	1.23
39439--39497	26	2.3	25	80	13	75	52	1	0	45	1.10
39615--39667	19	2.8	18	83	13	63	66	1	0	32	1.03
39615--39673	9	6.2	9	76	9	55	64	3	0	32	1.10
39700--39753	25	2.2	25	83	6	65	55	0	3	40	1.17
39629--39734	35	3.1	34	73	17	103	57	0	1	39	1.16
39723--39759	13	2.9	13	81	18	51	45	0	5	48	1.25
39695--39745	20	2.5	20	80	0	57	56	0	1	41	1.10
39712--39759	25	1.9	25	91	8	80	47	0	4	47	1.21
39837--39907	24	2.8	25	78	17	76	46	0	1	52	1.09
39871--39909	12	3.4	11	83	13	51	48	0	0	51	1.00
40469--40535	20	3.4	20	73	6	57	52	2	0	44	1.16
40893--40937	23	1.9	24	86	13	67	51	0	0	48	1.00
40832--41007	89	2.0	86	80	12	198	49	2	2	46	1.27
41152--41208	26	2.2	26	78	15	64	47	1	0	50	1.11
41687--41815	14	9.1	15	65	22	57	48	2	0	48	1.19
41755--41845	15	6.2	15	78	16	68	49	0	1	49	1.08
42370--42394	12	2.1	12	100	0	50	52	0	0	48	1.00
43127--43224	50	2.0	49	91	2	160	26	9	30	33	1.88
43481--43514	13	2.6	13	85	0	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43481--43514	7	5.0	7	92	7	52	52	0	0	47	1.00
44148--44198	12	4.3	11	79	16	57	64	0	1	33	1.05
47590--47894	163	1.9	159	89	4	477	28	21	13	36	1.92
49982--50025	22	2.0	22	95	0	79	43	13	11	31	1.80
53684--53745	25	2.6	25	84	5	83	40	19	25	14	1.90
53892--53935	22	2.0	22	90	0	70	43	13	9	34	1.76
53945--53969	8	3.1	8	100	0	50	52	12	12	24	1.72
61320--61523	104	2.0	100	88	7	304	18	20	20	40	1.91
63221--63248	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1

The End!