Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168475.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_74, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125787
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Warning! 1000 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:322 original size:50 final size:50
Alignment explanation
Indices: 267--362 Score: 124
Period size: 50 Copynumber: 1.9 Consensus size: 50
257 AACCAGCACG
* *
267 CGGGCACTGAACCGACC-GAAGAGGCATAATGCGCAAG-CTGAGGATCAACC
1 CGGGCACTCAACCGACCAG-AGAGGCAGAATGCGCAAGTC-GAGGATCAACC
* *
317 CGGGCATTCAACCGACCAGAGAGGCAGATTGCGCAAGTCGAGGATC
1 CGGGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATC
363 GGCTCGGTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
50 38 0.95
51 2 0.05
ACGTcount: A:0.30, C:0.27, G:0.31, T:0.11
Consensus pattern (50 bp):
CGGGCACTCAACCGACCAGAGAGGCAGAATGCGCAAGTCGAGGATCAACC
Found at i:951 original size:26 final size:26
Alignment explanation
Indices: 922--972 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
912 CCGATCTAAT
922 CTTAGAC-TGGAAATGAACTCCGTATA
1 CTTAGACATGG-AATGAACTCCGTATA
948 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
973 GCCTAACCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:1039 original size:196 final size:196
Alignment explanation
Indices: 705--1174 Score: 568
Period size: 196 Copynumber: 2.4 Consensus size: 196
695 CCTGCTGCCG
* ** * *
705 CAACCCTCGGTCCGGTCCGATCTTAGACTAGAAATGAACTTCGTATGCTTAGACATGGAATGAAC
1 CAACCCTCGATCCGGTCTAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * ** * *
770 TCTGTATGCCTAAACCAACCAACGAAATGAGCGTACGGGCGTTCAGCCGACCGAAAAGGTAGAAC
66 TCCGTATGCCTAAACCAACCAACAAAATGAGCGTACGGGCACTCAACCGACCGAAAAGGCAGAAC
** * * * *
835 GTGCAAGCCGAGGATTGACCCGGTCCCCCCTGCATTCTGTCGATCCTGCTGCTGGTCCTACTGTC
131 ACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCCTACTATC
900 A
196 A
* *
901 CAACCCTCGATCCGATCTAATCTTAGACTGGAAATGAACTCCGTATACTTAGACATGGAATGAAC
1 CAACCCTCGATCCGGTCTAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAAC
* * * * * *
966 TCCGTATGCCTAACCCAACCTATAAAATGAGTGTGCGGGCACTCAACCGGCC-AGAAAGGCAGAA
66 TCCGTATGCCTAAACCAACCAACAAAATGAGCGTACGGGCACTCAACCGACCGA-AAAGGCAGAA
* * * * * *
1030 TACGCAAGCCGGGGATCGGCCTGGTCCCCCTTGTATGCTGTCGATCCTGCTACTGGTCCTACTAT
130 CACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCCTACTAT
*
1095 CG
195 CA
* * * *
1097 TAACCCTC-AGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTACGCTTAGAC-TGGGAATAA
1 CAACCCTCGA-TCCGGTCTAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACAT-GGAATGA
1160 ACTCCGTATGCCTAA
64 ACTCCGTATGCCTAA
1175 GTCAACCCAT
Statistics
Matches: 233, Mismatches: 38, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
195 3 0.01
196 230 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (196 bp):
CAACCCTCGATCCGGTCTAATCTTAGACTGGAAATGAACTCCGTATGCTTAGACATGGAATGAAC
TCCGTATGCCTAAACCAACCAACAAAATGAGCGTACGGGCACTCAACCGACCGAAAAGGCAGAAC
ACGCAAGCCGAGGATCGACCCGGTCCCCCCTGCATGCTGTCGATCCTGCTACTGGTCCTACTATC
A
Found at i:1147 original size:26 final size:26
Alignment explanation
Indices: 1118--1167 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
1108 CCGGTCTAAT
*
1118 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATAAACTCCGTACG
1144 CTTAGACTGGGAATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
1168 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:1520 original size:159 final size:154
Alignment explanation
Indices: 1290--1899 Score: 582
Period size: 159 Copynumber: 4.0 Consensus size: 154
1280 CCAGTCCTGC
* * * *
1290 TGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
** * * * *
1355 ACGAAACGAGCGTGTGGGCGCTGAGCAGGCCGGAGAGGCATAATGCGCAAGCCAGAGATCGGCTC
66 ACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGAGATCGACCC
1420 GGTCCCCCTCTGCGTGCTATTGATCCCG
131 GGTCCCCC-CTGCGTGCTA-TGAT--CG
* *
1448 TTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 -TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * ** *
1513 CATGAAACGGGCATGCGGGCGC-GTAGCTGACCGGAGAGGCAAAATGTACAAGTC-GAGGATCGA
65 CACGAAACGAGCGTACGGGCGCTG-AGCCGACCGGAGAGGCATAATGCGCAAGCCAGA-GATCGA
1576 CCCGGTCCCCCCTGCGTGC--T-A---
128 CCCGGTCCCCCCTGCGTGCTATGATCG
* * * *
1597 --CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCC
1 TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
* ** * * ** *
1660 ATGAAACGAATGTACGGGCGGTGACCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATC-AGCC
66 ACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGAGATCGA-CC
* * *
1724 CGATCCCCCTCTACGTGCTACTGGTTCTG
130 CGGTCCCCC-CTGCGTGCTA-T-GATC-G
* *
1753 CTGCCACAACCCTCGGTTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 -TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
1818 CACGAAAC-AGGCGTACGGGAGCTCAGCCGGCTGGAGAGG--TAGATGCGCAAGCCAGGGATCGA
65 CACGAAACGA-GCGTACGGGCGCTGAGCCGACCGGAGAGGCATA-ATGCGCAAGCCAGAGATCGA
* *
1880 CTCGGTCCCCCCTTCGTGCT
128 CCCGGTCCCCCCTGCGTGCT
1900 GCGGATTCTG
Statistics
Matches: 369, Mismatches: 61, Indels: 44
0.78 0.13 0.09
Matches are distributed among these distances:
145 1 0.00
146 109 0.30
147 9 0.02
150 1 0.00
154 1 0.00
155 1 0.00
157 10 0.03
158 37 0.10
159 200 0.54
ACGTcount: A:0.23, C:0.30, G:0.29, T:0.18
Consensus pattern (154 bp):
TGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ACGAAACGAGCGTACGGGCGCTGAGCCGACCGGAGAGGCATAATGCGCAAGCCAGAGATCGACCC
GGTCCCCCCTGCGTGCTATGATCG
Found at i:1719 original size:146 final size:146
Alignment explanation
Indices: 1451--1825 Score: 373
Period size: 146 Copynumber: 2.5 Consensus size: 146
1441 GATCCCGTTG
** * *
1451 CCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * * *
1516 GAAACGGGCATGCGGGCGCGTAGCTGACCGGAGAGGCAAAATGTACAAGTCGAGGATC-GACCCG
66 GAAAC-GGAATGCGGGCGCGTACCCGACCGGAGAGGCAAAATGCACAAGTCGAGGATCAG-CCCG
* *
1580 GTCCCCC-CTGCGTGCTA
129 ATCCCCCTCTACGTGCTA
* *
1597 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCAT
1 CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
* * *
1662 GAAAC-GAATGTACGGGCG-GTGACCCGACCGGAGAGGCATAATGCGCAAG-CTGGGGATCAGCC
66 GAAACGGAATG--CGGGCGCGT-ACCCGACCGGAGAGGCAAAATGCACAAGTC-GAGGATCAGCC
1724 CGATCCCCCTCTACGTGCTA
127 CGATCCCCCTCTACGTGCTA
* * * *
1744 CTGGTTCTGCTGCCACAACCCTCGGTTCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
1 ------------CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCT
*
1809 AAGCCAACCCACGAAAC
54 AAGCCAACCCATGAAAC
1826 AGGCGTACGG
Statistics
Matches: 189, Mismatches: 22, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
144 4 0.02
145 3 0.02
146 109 0.58
147 10 0.05
159 63 0.33
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (146 bp):
CCACAACCCTCAGTCCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAT
GAAACGGAATGCGGGCGCGTACCCGACCGGAGAGGCAAAATGCACAAGTCGAGGATCAGCCCGAT
CCCCCTCTACGTGCTA
Found at i:1856 original size:305 final size:304
Alignment explanation
Indices: 1287--1899 Score: 784
Period size: 305 Copynumber: 2.0 Consensus size: 304
1277 CTACCAGTCC
* *
1287 TGCTGCCACAACCCTCGGTCCGACAGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCAGTCCGACAGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
* ** * * *
1352 CCCACGAAACGAGCGTGTGGGCGCTGAGCAGGCCGGAGAGGCATAATGCGCAAGCCAGAGATCGG
66 CCCACGAAACGAACGTACGGGCGCTGACCAGACCGGAGAGGCATAATGCGCAAGCCAGAGATCAG
* * * * * * *
1417 CTCGGTCCCCCTCTGCGTGCTATTGATCCCGTTGCCACAACCCTTGGTCTGGCTGGGGCTTAGAC
131 CCCGATCCCCCTCTACGTGCTACTGATCCCGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGAC
* * * * *
1482 ATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCATGCGGGCGCGTAGCTGACCGG
196 ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGGGAGCGTAGCCGACCGG
* *
1547 AGAGGCAAAATGTACAAGTC-GAGGATCGACCCGGTCCCCCCTGCG
261 AGAGG-AAAATGCACAAGCCAG-GGATCGACCCGGTCCCCCCTGCG
*
1592 TGCTACCACAACCCTCAGTCCGGCTA-GGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
1 TGCTACCACAACCCTCAGTCCGAC-AGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCA
* * * * ** *
1656 ACCCATGAAACGAATGTACGGGCGGTGACCCGACCGGAGAGGCATAATGCGCAAGCTGGGGATCA
65 ACCCACGAAACGAACGTACGGGCGCTGACCAGACCGGAGAGGCATAATGCGCAAGCCAGAGATCA
* * *
1721 GCCCGATCCCCCTCTACGTGCTACTGGTTCTGCTGCCACAACCCTCGGT-TCAGCTGGGGCTTAG
130 GCCCGATCCCCCTCTACGTGCTACTGATCCCGCTGCCACAACCCTCGGTCT-AGCTGGGGCTTAG
* *
1785 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCGTACGGGAGC-TCAGCCGGC
194 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGGGAGCGT-AGCCGAC
* * * * * *
1849 TGGAGAGGTAGATGCGCAAGCCAGGGATCGACTCGGTCCCCCCTTCG
258 CGGAGAGGAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCG
1896 TGCT
1 TGCT
1900 GCGGATTCTG
Statistics
Matches: 263, Mismatches: 41, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
304 36 0.14
305 226 0.86
306 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.29, T:0.18
Consensus pattern (304 bp):
TGCTACCACAACCCTCAGTCCGACAGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAA
CCCACGAAACGAACGTACGGGCGCTGACCAGACCGGAGAGGCATAATGCGCAAGCCAGAGATCAG
CCCGATCCCCCTCTACGTGCTACTGATCCCGCTGCCACAACCCTCGGTCTAGCTGGGGCTTAGAC
ATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAGGCATACGGGAGCGTAGCCGACCGG
AGAGGAAAATGCACAAGCCAGGGATCGACCCGGTCCCCCCTGCG
Found at i:2723 original size:26 final size:26
Alignment explanation
Indices: 2685--2737 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
2675 GGCTCAAAAT
**
2685 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
2711 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
2737 C
1 C
2738 CTAGGCCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:4353 original size:21 final size:21
Alignment explanation
Indices: 4327--4372 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
4317 TACCGGTCCC
4327 GCTGCCACCACCTTCGATCCA
1 GCTGCCACCACCTTCGATCCA
*
4348 GCTGCCACCACCTTCGGTCCA
1 GCTGCCACCACCTTCGATCCA
4369 GCTG
1 GCTG
4373 GGGCTTAGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.46, G:0.20, T:0.20
Consensus pattern (21 bp):
GCTGCCACCACCTTCGATCCA
Found at i:5052 original size:26 final size:26
Alignment explanation
Indices: 5000--5052 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
4990 TCCGTCTGAT
* *
5000 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
5026 CTTAGACTAGGG-ATGAACTCCGCATG
1 CTTAGACT-GGGAATGAACTCCGCATG
5052 C
1 C
5053 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:6034 original size:158 final size:156
Alignment explanation
Indices: 5736--6238 Score: 516
Period size: 159 Copynumber: 3.2 Consensus size: 156
5726 ACTCCATATG
* *
5736 CTTAGACAT-GGAATGAACTCCGTATGCCCATGCCAACCCACGAAACGAGCGTGCGGGCGCTCAA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCT-AA
* * * * *
5800 CCGGCTGAAGAGGCAGAATGCGCAAGCCAGGGATCGACCCAGTCCCCCCCTGCTTGCTGT-TGAT
64 GCGGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCG-CCCAGT-CCCCCCTGCATGCTGTCCG-T
* *
5864 CCTGCTGCCACAACCCTCACTCCGATCTGAT
126 CCTGCTACCACAACCCTCAGTCCGATCTGAT
* * ** * * *
5895 CTTACACTGGGAATGAACTCCGTATGCATAAGTTAACCCATGAAACGAGTGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
* * * *
5960 GACCGAAGAGGCATAATGCGCAAGCCGGGGATCAGCCCAGTCCCCCTCTGCGTGCTGTCCGTCCC
66 GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCAGTCCCCC-CTGCATGCTGTCCGTCCT
* **
6025 GCTACCACAACCCTCAGTCCG-GCTAGGGG
129 GCTACCACAACCCTCAGTCCGATCT--GAT
* * *
6054 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAAC-AGGCGTGCGGGTGCTCA
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGA-GCGTGCGGGCGCTAA
* * * * *
6117 GCTGGTCGGAGAAGCAGAATGCGCAAGTCGGGGATCGGCCCAGTCCCCCCTGCATGCTG-CCTAT
64 GC-GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATC-GCCCAGTCCCCCCTGCATGCTGTCC-GT
* * *
6181 CCTGCTACCGCAAGCCTCGGTCC-AGTCTGAT
126 CCTGCTACCACAACCCTCAGTCCGA-TCTGAT
6212 CTTAGACTGGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
6239 TTAGACTGGG
Statistics
Matches: 283, Mismatches: 48, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
157 8 0.03
158 98 0.35
159 135 0.48
160 42 0.15
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (156 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTAAGC
GGCCGAAGAGGCAGAATGCGCAAGCCGGGGATCGCCCAGTCCCCCCTGCATGCTGTCCGTCCTGC
TACCACAACCCTCAGTCCGATCTGAT
Found at i:6248 original size:26 final size:26
Alignment explanation
Indices: 6212--6264 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6202 CCAGTCTGAT
6212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
6238 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
6264 C
1 C
6265 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:6671 original size:25 final size:26
Alignment explanation
Indices: 6637--6688 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
6627 CCGGTTCAAC
6637 CTTAGACTGGGGATGAACTCC-TATG
1 CTTAGACTGGGGATGAACTCCGTATG
6662 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGGATGAACTCCGTATG
6688 C
1 C
6689 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGGATGAACTCCGTATG
Found at i:7878 original size:26 final size:26
Alignment explanation
Indices: 7849--7899 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
7839 GATCTGATCA
* *
7849 TAGACTGGGAATTAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
7875 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
7900 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:8615 original size:26 final size:26
Alignment explanation
Indices: 8578--8630 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8568 GGCTCAAAAT
* *
8578 CTTAGACTAGGAGTGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
8604 CTTAGACAAGGAATGAACTTCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
8630 C
1 C
8631 GTAAGCTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:8934 original size:159 final size:157
Alignment explanation
Indices: 8771--9070 Score: 345
Period size: 159 Copynumber: 1.9 Consensus size: 157
8761 TCTTACGCTG
* * * * *
8771 GGAATGAACTCCGTATGCATAAGTC-AACCCACGAAACGTG-CGTGCAGGCGCTGAGCCGG-CTG
1 GGAATGAACTCCCTATGCATAAG-CAAACCCACGAAACG-GACATGCAGGCACTCAGCCGGCCAG
*
8833 AAGAGGCATAATGCACAAGCTGAGGATCAGCCCGATCCCCCTCTGCGTGCTGCCGATCCCGCTGC
64 -AGAGGCAGAATGCACAAGCTGAGGATCAGCCCGATCCCCC-CTGCGTGCTGCCGAT-CCGCTGC
8898 CACAACCCTCGATCCGACTGGGGCTTAGTCAT
126 CACAACCCTCGATCCGACTGGGGCTTAGTCAT
* * * * *
8930 GGAATGAACTCCCTATGCCTAAGCAAATCCATGAAACGGACATGCGGGCACTCAGTCGGCCAGAG
1 GGAATGAACTCCCTATGCATAAGCAAACCCACGAAACGGACATGCAGGCACTCAGCCGGCCAGAG
* * * * * * * * *
8995 AGGCAGAATGCGCAAGCTGGGGATCGGCTCGATCCCCCCTGTGTGCTGTCGATCTGCTGTCGCAA
66 AGGCAGAATGCACAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCCGCTGCCACAA
*
9060 CCCTCGGTCCG
131 CCCTCGATCCG
9071 GTCTGATCTT
Statistics
Matches: 117, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
157 19 0.16
158 15 0.13
159 81 0.69
160 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (157 bp):
GGAATGAACTCCCTATGCATAAGCAAACCCACGAAACGGACATGCAGGCACTCAGCCGGCCAGAG
AGGCAGAATGCACAAGCTGAGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCCGCTGCCACAA
CCCTCGATCCGACTGGGGCTTAGTCAT
Found at i:9482 original size:26 final size:26
Alignment explanation
Indices: 9446--9498 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
9436 TCAATGCCAT
* *
9446 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
9472 CTTAGATTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
9498 C
1 C
9499 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:9738 original size:369 final size:362
Alignment explanation
Indices: 8882--9916 Score: 1080
Period size: 368 Copynumber: 2.8 Consensus size: 362
8872 CCTCTGCGTG
* * * *
8882 CTGCCGATCCCGCTGCCACAACCCTCGATCCGACTGGGGCTTAGTCATGGAATGAACTCCCTATG
1 CTGCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * * * *
8947 CCTAAGCAAATCCATG-AAACG-GACATGCGGGCACTCAGTCGGCCAGAGAGGCAGAATGCGCAA
66 CCTAAGCAAACCCATGAAAAAGCG-CATG-GGG--CTCAGCCGGCCAGAAAGGTAGAATGCGCAA
* * * * *
9010 G-CTGGGGATCG-GCTCGATCCCCCCTGTGTGCTGTCGATCTGCTGTCGCAACCCTCGGTCCGGT
127 GTC-GAGGATCGACCT-GGTCCCCTCTGTGTGCTGTCGATCTGCTGCCGCAACCCTCGGTCCGGT
* * * * *
9073 CTGATCTTAGACTCA-GAATGAACTCTGTATGCTT-GCACCGAGGATGAACTCTGTATGCCTAAG
190 C-CATCTTAGACT-AGGAATGAATTC-GTATGCTTAG-ACTGGGGATGAACTCCGTATGCCTAAG
** * *** * * *
9136 TCAACCCACGGAACGAGCGTGCAGGTGCTCAGCCGGTTGAGAGGCCGATCGGAGAGGCATAATGT
251 TCAACCCACAAAACAAGCGTGCAGGTGCTCAGCCGACCGAGAGGCCGATCGAAGAGGAATAATGC
** * * * * *
9201 GCAAGCTGAGGATCAGCCTGGTCCACCTATGCGTGCTGCCAATCTCG
316 GCAAGCCAAGGATCAGCCCGATCCACCTATGCGTGCTACCAATCCCA
*
9248 CTGCCGATCCTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
1 CTGCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
* * *** ** * * *
9313 CCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTAG-CTGAAGATGTAGAATGCGTAAG
66 CCTAAGCAAACCCATGAAA-AAGCGCATGGG-GCTCAGCCGGCCAGAA-AGGTAGAATGCGCAAG
* * * * **
9377 TCGAGGATCGACCTGGTTCCCTTCTGTGTGATGTCAATCTTGCTGCCGCAACCCTCGGTTCAATG
128 TCGAGGATCGACCTGG-TCCCCTCTGTGTGCTGTCGATC-TGCTGCCGCAACCCTCGGTCCGGT-
* *
9442 CCATCTTAGACTGGGAATGAATTTCGTATGCTTAGATTGGGGATGAACTCCGTATGCCTAAGTCA
190 CCATCTTAGACTAGGAATGAA-TTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCA
* *
9507 ACCCACAAAACAAGCGTTCGGGTGCTCAGCCGACCGAAGAGGCC-AGTCGAAGAGGAATAATGCG
254 ACCCACAAAACAAGCGTGCAGGTGCTCAGCCGACCG-AGAGGCCGA-TCGAAGAGGAATAATGCG
* * *
9571 CAAGCCAAGGATCAGCCCGATCCCCCTCTGCGTGCTACCGATCCCA
317 CAAGCCAAGGATCAGCCCGATCCACCTATGCGTGCTACCAATCCCA
* * * *
9617 CTGTCGGTTCTGCTGCCACAACCCTCGGTCC-AGCTAGGGCTTAGACATGGAATGAACTCCGTAT
1 CTGCCGATCCTGCTGCCACAACCCTCGGTCCGA-CTGGGGCTTAGACATGGAATGAACTCCGTAT
* *
9681 GCCTAAGCTAACCCATGAAATAAGCGCATGGGTGCTCAGCCGGCCAGAAAGGTAGAATGCACAAG
65 GCCTAAGCAAACCCATGAAA-AAGCGCATGGG-GCTCAGCCGGCCAGAAAGGTAGAATGCGCAAG
* ** *
9746 TCGAGGATCGACCCGGTCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCGGTCC
128 TCGAGGATCGACCTGGTCCCCTCTGTGTGCTGTCGAT-CTGCTGCCGCAACCCTCGGTCCGGTCC
*
9811 GATCTTAGACTAGGAATGAACTTCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
192 -ATCTTAGACTAGGAATGAA-TTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAA
* ** * * * *
9876 CCCACGAAATGAGTGTGCGGGCGCTAAGCCGACCAGAGAGG
255 CCCACAAAACAAGCGTGCAGGTGCTCAGCCGACC-GAGAGG
9917 TAGGATGCGC
Statistics
Matches: 551, Mismatches: 98, Indels: 38
0.80 0.14 0.06
Matches are distributed among these distances:
365 3 0.01
366 101 0.18
367 27 0.05
368 232 0.42
369 184 0.33
370 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (362 bp):
CTGCCGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATG
CCTAAGCAAACCCATGAAAAAGCGCATGGGGCTCAGCCGGCCAGAAAGGTAGAATGCGCAAGTCG
AGGATCGACCTGGTCCCCTCTGTGTGCTGTCGATCTGCTGCCGCAACCCTCGGTCCGGTCCATCT
TAGACTAGGAATGAATTCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACA
AAACAAGCGTGCAGGTGCTCAGCCGACCGAGAGGCCGATCGAAGAGGAATAATGCGCAAGCCAAG
GATCAGCCCGATCCACCTATGCGTGCTACCAATCCCA
Found at i:9865 original size:26 final size:26
Alignment explanation
Indices: 9814--9866 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
9804 CCGGTCCGAT
*
9814 CTTAGACTAGGAATGAACTTCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
9840 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
9866 C
1 C
9867 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:10919 original size:159 final size:158
Alignment explanation
Indices: 10547--11046 Score: 375
Period size: 159 Copynumber: 3.2 Consensus size: 158
10537 GGCTCAAAAT
* ** * * ** * *
10547 CTTAGACT-GGAAAGAACTCTGTATGCCTAAGCCAATCCACGCAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAAC
* * * ** * * * **
10611 CGGCCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCC-GCTCCCCCCTGCGTGCTG-TAATCC
66 CGACCGCAAAGGCAGAATACGCAAGCCGGGGATCGACCCGGC-CCCCCCTACGTGCAGCCGATCC
* ** ** * * * *
10674 CACTGCCGTAACCCTTGGTCCAATCCGAT
130 CGCTGCCACAACCCTCAGTCTAGTCTGAG
* ** * ** * * *
10703 CTTACACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAAC
1 CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAAC
* * * * ** *
10768 CGGCCGCAGAGGCATAATGCGCAAGCCGGGGATC-AGCCCGGTCCCCCTTTACGTGCTA-CCGGT
66 CGACCGCAAAGGCAGAATACGCAAGCCGGGGATCGA-CCCGG-CCCCCCCTACGTGC-AGCCGAT
*
10831 CCCGCTGCCACAACCCTCAGTCTAG-CTGGGG
128 CCCGCTGCCACAACCCTCAGTCTAGTCT-GAG
* * * * *
10862 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAGCCCACAAAACGGGCGTACGGGCACTCAG
1 CTTAGAC-TGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAA
* * * *
10926 CCGACCGGAAAGGCAGAATACGCAAGCTGGGGATCGACCTGGCCCCCCCTGCGTGCAGCCGATCC
65 CCGACCGCAAAGGCAGAATACGCAAGCCGGGGATCGACCCGGCCCCCCCTACGTGCAGCCGATCC
* * * *
10991 CGCTGTCGCAACCCTCGGTCTAGTCTGAT
130 CGCTGCCACAACCCTCAGTCTAGTCTGAG
11020 CTTAGACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCATATGC
11047 TTAGACTGGG
Statistics
Matches: 269, Mismatches: 63, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
156 8 0.03
157 80 0.30
158 74 0.28
159 105 0.39
160 2 0.01
ACGTcount: A:0.23, C:0.32, G:0.27, T:0.18
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCCACAAAACGAGCGTACGGGCACTCAAC
CGACCGCAAAGGCAGAATACGCAAGCCGGGGATCGACCCGGCCCCCCCTACGTGCAGCCGATCCC
GCTGCCACAACCCTCAGTCTAGTCTGAG
Found at i:11056 original size:26 final size:26
Alignment explanation
Indices: 11020--11072 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
11010 CTAGTCTGAT
11020 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
11046 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
11072 C
1 C
11073 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:11374 original size:354 final size:343
Alignment explanation
Indices: 10703--11511 Score: 930
Period size: 354 Copynumber: 2.3 Consensus size: 343
10693 CCAATCCGAT
* * * * **
10703 CTTACACTGGGAATGAACTCTGTATGCATAAGTCAACCCATGAAACGAGCGTGCGGGCATTGAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTCAGT
* * * * *
10768 CGGCCGCAGAGGCATAATGCGCAAGCCGGGGATCAGCCCGGTCCCCCTTTACGTGCTACCGGTCC
66 CGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTTACGTGCTACCGGTCC
* *
10833 CGCTGCCACAACCCTCAGTCTAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAG
131 CGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * *
10898 CCCACAAAACGGGCGTACGGGCACTCAGCCGACCGGAAAGGCAGAATACGCAAGCTGGGGATCGA
196 CCCACAAAACGAGCGTACAGGCACTCAACCGACCGGAAAGGCAGAATACCCAAGCTGGGGATCGA
* * *
10963 CCTGGCCCCCCCTGCGTGCAGCCGATCCCGCTGTCGCAACCCTCGGTCTAGTCTGATCTTAGACT
261 CCTGGCCCCCCCTGCATGCAGCCGATCCCGCTGACGCAACCCTCAGTCTAGTCTGATCTTAGACT
11028 GGGAATGAACTCCATATG
326 GGGAATGAACTCCATATG
* * * **
11046 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTCAGT
*
11111 CGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCTCTTTGCATGCTGCCGATCC
66 CGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTT--A------CG-T--
* ** * * * *
11176 CGCTGCCGGTCCTTCTGCCACAACCTTCGGTCCGGCTGGGG-TTAGACATGGAATGAACTCCGTA
120 -GCTACCGGTCCCGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTA
** * * * * * *
11240 TGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCAACCGGCCGGAGAGGCAGAATGCCCAA
184 TGCCTAAGCCAACCCACAAAACGAGCGTACAGGCACTCAACCGACCGGAAAGGCAGAATACCCAA
* * * *
11305 G-TCGGGGATCGACAC-GGTCCCCCCTGCATGCTA-TCGATCCTGCT-ACGGTAACCCTCAGTC-
249 GCT-GGGGATCGAC-CTGGCCCCCCCTGCATGC-AGCCGATCCCGCTGAC-GCAACCCTCAGTCT
* * *
11365 CGTTCTGATCTTAGATTGGGAATGAACTCCGTATG
310 AG-TCTGATCTTAGACTGGGAATGAACTCCATATG
*
11400 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTCAG
* * * *
11464 TCGACTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCC
65 TCGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCC
11512 CCTGCTTGCT
Statistics
Matches: 389, Mismatches: 59, Indels: 25
0.82 0.12 0.05
Matches are distributed among these distances:
343 98 0.25
345 1 0.00
351 2 0.01
352 1 0.00
353 3 0.01
354 248 0.64
355 36 0.09
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (343 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCATTCAGT
CGACTGAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCCCTTTACGTGCTACCGGTCC
CGCTGCCACAACCCTCAGTCCAGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
CCCACAAAACGAGCGTACAGGCACTCAACCGACCGGAAAGGCAGAATACCCAAGCTGGGGATCGA
CCTGGCCCCCCCTGCATGCAGCCGATCCCGCTGACGCAACCCTCAGTCTAGTCTGATCTTAGACT
GGGAATGAACTCCATATG
Found at i:11748 original size:357 final size:353
Alignment explanation
Indices: 10860--11757 Score: 841
Period size: 354 Copynumber: 2.5 Consensus size: 353
10850 GTCTAGCTGG
* * * * * * * *
10860 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACAAAACGGGCGTACGGGCACTCA
1 GGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * * * * * * * *
10925 GCCGACCGGAAAGGCAGAATACGCAAGCTGGGGATCGAC-CTGGCCCCCCCTGCGTGC-AGCCGA
66 ACCGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACAC-AGTCCCCCCTGCATGCTA-TCGA
** * * * * *
10988 TCCCGCTGTC-GCAACCCTCGGT-CTAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAG
129 TCCTACT-ACGGCAACCCTCAGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
11051 ACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGACT
192 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGTCGACT
* * * ** *
11116 GAAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCCTCTTTGCATGCTGCCGATCCCGCTG
257 GAAGAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCCTGCATGCTGCCGATCCCGCAG
* * * *
11181 CCGGTCCTTCTGCCACAACCTTCGGTCCGGCTG
322 CCGGTCCATCT-CCACAACCTTCGGTACGCCTA
* * * *
11214 GGGTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCAGGCGCTCA
1 GGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
* * * *
11279 ACCGGCCGGAGAGGCAGAATGCCCAAGTCGGGGATCGACACGGTCCCCCCTGCATGCTATCGATC
66 ACCGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACACAGTCCCCCCTGCATGCTATCGATC
* * * * *
11344 CTGCTACGGTAACCCTCAGTCCGTTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACAT
131 CTACTACGGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC-T
* * * *
11409 -GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAGTCGACTGGA
195 GGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGTCGACTGAA
* * * *
11473 GAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCCTGCTTGCTTCC-ATAACCCTCAGT
260 GAGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCCTGCATGCTGCCGAT--CCCGCAG-
* * * * *
11537 CCGGTTCGATCT-TA-GA-C-TGGGAATGAACTCCATA
322 CCGG-TCCATCTCCACAACCTTCGG--T--ACGCC-TA
* * *
11571 TGCTTAGACATGGAATGAACTATGTATGCCTAAGCCAACCCACGAAACGA-CAGTGCAGGTGCTC
1 GGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGC-GTGCAGGCGCTC
* * * ** * * * *
11635 AACCGATCGGGGAGGCAGACTGCGTAAGCCGAGGATTGAC-CTAGTCCCTCCTGCGTGCTGTCGA
65 AACCGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACAC-AGTCCCCCCTGCATGCTATCGA
* *
11699 TCCTACTATC-GCAACCTTCAGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGC
129 TCCTACTA-CGGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
11758 CTAAGTCAAC
Statistics
Matches: 446, Mismatches: 81, Indels: 31
0.80 0.15 0.06
Matches are distributed among these distances:
352 3 0.01
353 4 0.01
354 260 0.58
355 10 0.02
356 8 0.02
357 160 0.36
358 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (353 bp):
GGCTTAGACATGGAATGAACTACGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
ACCGACCGGAGAGGCAGAATGCCCAAGCCGAGGATCGACACAGTCCCCCCTGCATGCTATCGATC
CTACTACGGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGTCGACTGAAG
AGGCAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCCTGCATGCTGCCGATCCCGCAGCCGG
TCCATCTCCACAACCTTCGGTACGCCTA
Found at i:12432 original size:26 final size:26
Alignment explanation
Indices: 12403--12455 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
12393 CCAGTCCGAT
** *
12403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
*
12429 CTTAGACAAGGAATAAACTTCGTATG
1 CTTAGACAAGGAATAAACTCCGTATG
12455 C
1 C
12456 CTAAACCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCGTATG
Found at i:12539 original size:355 final size:355
Alignment explanation
Indices: 11855--12539 Score: 917
Period size: 355 Copynumber: 1.9 Consensus size: 355
11845 TACGTGCTGT
* * * * *
11855 CGATCCCGCTGCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAGTGAACTCCCTATGCCTA
1 CGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
* * * *
11920 AGCCAACCCACGAAATGGGCATACGATCGCTCAGCCGGATGAAGAGGCAGAATGTGCAAGTCGGG
66 AGCCAACCCACGAAACGAGCATACGATCGCTCAACCGGATGAAGAGGCAGAATGCGCAAGTCGGG
* * * * * *
11985 GATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGTTGTCGCAACCCTTGGTTCAGACCGATCT
131 GACCAGCCCGGTCCCCCCTATGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCAGACCGATCT
** * * **
12050 TAGACTCGAAATGAACTCCGTATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCAT
196 TAGACTCGAAATGAACTCCGTATGCTTAGACAAGGAATAAACTCTGTATGCCTAAACCAACCCAT
* * * * * *
12115 GAAACGAGCGTGCAGGCACTTAGCCGATCGGACAGGCATAATGCATAAGCCGGGGATCAGCCCGG
261 GAAACGAGCGTGCAGGCACTCAGCCGACCAGACAGGCAGAATGCACAAGCCGGGCATCAGCCCGG
12180 TCCCCTTCTGCATGCTGTCGATCCCGCTAC
326 TCCCCTTCTGCATGCTGTCGATCCCGCTAC
*
12210 CGATCCTGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
1 CGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
** * * * *
12275 AGCCAACCCACGAAACGAGTGTGCGGGT-GCTCAACCGGCTGAAGAGGTAGAATGCGCAAG-CTG
66 AGCCAACCCACGAAACGAGCATAC-GATCGCTCAACCGGATGAAGAGGCAGAATGCGCAAGTC-G
* * *
12338 GGGACCGGCCCGGTCCCCCCTATGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCCAGTCCGAT
129 GGGACCAGCCCGGTCCCCCCTATGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCAGACCGAT
* *
12403 CTTAGACTGGGAATGAACTCCGTATGCTTAGACAAGGAATAAACT-TCGTATGCCTAAACCAACC
194 CTTAGACTCGAAATGAACTCCGTATGCTTAGACAAGGAATAAACTCT-GTATGCCTAAACCAACC
* * * * *
12467 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGCATCAGCC
258 CATGAAACGAGCGTGCAGGCACTCAGCCGACCAGACAGGCAGAATGCACAAGCCGGGCATCAGCC
*
12532 TGGTCCCC
323 CGGTCCCC
12540 CCTGTGTGCT
Statistics
Matches: 282, Mismatches: 45, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
354 2 0.01
355 278 0.99
356 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (355 bp):
CGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTA
AGCCAACCCACGAAACGAGCATACGATCGCTCAACCGGATGAAGAGGCAGAATGCGCAAGTCGGG
GACCAGCCCGGTCCCCCCTATGTGCTATCGATCCTGCTGTCGCAACCCTCGGTCCAGACCGATCT
TAGACTCGAAATGAACTCCGTATGCTTAGACAAGGAATAAACTCTGTATGCCTAAACCAACCCAT
GAAACGAGCGTGCAGGCACTCAGCCGACCAGACAGGCAGAATGCACAAGCCGGGCATCAGCCCGG
TCCCCTTCTGCATGCTGTCGATCCCGCTAC
Found at i:12553 original size:184 final size:184
Alignment explanation
Indices: 12244--12613 Score: 499
Period size: 184 Copynumber: 2.0 Consensus size: 184
12234 TCCGACTGGG
* * * * *
12244 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACAAGGAATAAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * * * *
12309 CCGGCTGAAGAGGTAGAATGCGCAAGCTGGGGACCGGCCCGGTCCCCCCTATGTGCTATCGATCC
66 CCGGCAGAAGAGGCAGAATGCGCAAGCCGGGCACCAGCCCGGTCCCCCCTATGTGCTATCGATCC
** ** *
12374 TGCTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
131 TGCTGTCACAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * *
12428 GCTTAGACAAGGAATAAACTTCGTATGCCTAAACCAACCCATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACAAGGAATAAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAA
* * *
12493 CCGGCCAG-AGAGGCAGAATGCGCAAGCCGGGCATCAGCCTGGTCCCCCCTGTGTGCTATCGATC
66 CCGG-CAGAAGAGGCAGAATGCGCAAGCCGGGCACCAGCCCGGTCCCCCCTATGTGCTATCGATC
* * *
12557 CTGCTGTCACAACCCTTAATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTAT
130 CTGCTGTCACAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
12612 GC
1 GC
12614 CTAAGTCAAC
Statistics
Matches: 160, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
184 158 0.99
185 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (184 bp):
GCTTAGACAAGGAATAAACTCCATATGCCTAAACCAACCCACGAAACGAGCGTGCGGGCGCTCAA
CCGGCAGAAGAGGCAGAATGCGCAAGCCGGGCACCAGCCCGGTCCCCCCTATGTGCTATCGATCC
TGCTGTCACAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTAT
Found at i:12705 original size:856 final size:852
Alignment explanation
Indices: 11399--13174 Score: 2118
Period size: 856 Copynumber: 2.1 Consensus size: 852
11389 AACTCCGTAT
* * * *
11399 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCATTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
* * *
11464 TCGACTGGAGAGGTAGAATGCGCAAGTCAGGGATCAGCCCGATCCCCCCCTGCTTGCTTCCATAA
66 CCGACTGAAGAGGTAGAATGCGCAAGTCAGGGACCAGCCCGATCCCCCCCTGCTTGCTTCCATAA
* * * *
11529 CCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACATGGAATGAACTAT
131 CCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTAT
* * * * * *
11594 GTATGCCTAAGCCAACCCACGAAACGACAGTGCAGGTGCTCAACCGATCGGGGAGGCAGACTGCG
196 GTATGCCTAAACCAACCCACGAAACGACAGTGCAGGCGCTCAACCGACCAGAGAGGCAGAATGCG
* * * * * *
11659 TAAGCCGAGGATTGACCTAGTCCCTCCTGCGTGCTGTCGATCCTACTATCGCAACCTTCAGTCCG
261 CAAGCCGAGGATAGACCTAGTCCCCCCTGCGTGCTATCGATCCTACTATCACAACCTTCAATCCG
* * * * *
11724 ATCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCGATGAAACGAGCGTGTGGGC
326 ATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGC
* * * * *
11789 GCTGAGCCAACCAGAGAGGCATAACGCATAAGCCGGGGATTAGCCCAGTCCCCTTCTACGTGCTG
391 GCTGAGCCAACCAGAGAGGCAAAACGCACAAGCCGAGAATGAGCCCAGTCCCCTTCTACGTGCTG
* * * *
11854 TCGATCCCGCTGCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAGTGAACTCCCTATGCCT
456 TCGATCCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
** * ** *
11919 AAGCCAACCCACGAAATGGGCATAC-GATCGCTCAGCCGGATGA-AGAGGCAGAATGTGCAAGTC
521 AAGCCAACAAACGAAATGGGCAGACGGAT-GCTCAGCC-GACCAGAGAGGCAGAATGTCCAAGTC
* ** * *
11982 GGGGATCAGCCCGGTCCCCCCTGTGTGCTGTCGATCCTGTTGTCGCAACCCTTGGTTCAGACCGA
584 GGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAGACCGA
*
12047 TCTTAGACTCGAAATGAACTCCGTATGCTTAGACTGGGGATGAAC-TCTGTATGCCTAAGTCAAC
649 TCTTAGACTCGAAATGAACTCAGTATGCTTAGACTGGGGATGAACTTC-GTATGCCTAAGTCAAC
* * * * *
12111 CCATGAAACGAGCGTGC-AG-G-CACTTAGCC-GA-TC-G-GACAGGCATAATGCATAAGCCGGG
713 CCATGAAACGAGCGTACGAGTGCCACTCAGCCGGAGCCGGCGACAGGCATAATGCACAAGCCAGG
* * *
12169 GATCAGCCCGGTCCCCTTCTGCATGCTGTCGATCCCGCTACC-GATCCTGCTGCCACAACCCTCG
778 GATCAGCCCGGTCCCCCTCTACATGCTGCCGATCCCGCTACCAG-TCCTGCTGCCACAACCCTCG
12233 GTCCGA-CTGGG
842 GT-CGAGCTGGG
* **
12244 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGTGCTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
* * * * *
12309 CCGGCTGAAGAGGTAGAATGCGCAAG-CTGGGGACCGGCCCGGTCCCCCCTATGTGCTATCGATC
66 CCGACTGAAGAGGTAGAATGCGCAAGTC-AGGGACCAGCCCGATCCCCCC---CTGCT-T-G---
* * * *
12373 CTGCTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAA
122 CT--T-CCATAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAA
* * * *
12438 GGAATAAACT-TCGTATGCCTAAACCAACCCATGAAACGAGC-GTGCGGGCGCTCAGCCGGCCAG
184 GGAATAAACTAT-GTATGCCTAAACCAACCCACGAAACGA-CAGTGCAGGCGCTCAACCGACCAG
* * * *
12501 AGAGGCAGAATGCGCAAGCCG-GGCATCAG-CCTGGTCCCCCCTGTGTGCTATCGATCCTGCTGT
247 AGAGGCAGAATGCGCAAGCCGAGG-AT-AGACCTAGTCCCCCCTGCGTGCTATCGATCCTACTAT
*
12564 CACAACCCTT-AATCCGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
310 CACAA-CCTTCAATCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC
* * * * *
12628 GAAATGAGCATGCGGGCGC-GAAGCCGACCGGAGAGGTAAAATGCACAAGCCGAGAATCGA-CCC
374 GAAACGAGCATGCGGGCGCTG-AGCCAACCAGAGAGGCAAAACGCACAAGCCGAGAAT-GAGCCC
* * * *
12691 ATTCCTCC-TCTACGTGCTGTCGGTCCCACTGCCACAACCCTCGGTTTGACTGGGGCTTAGCCAT
437 AGTCC-CCTTCTACGTGCTGTCGATCCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACAT
* ** * *
12755 GGAATGAACTCCCTATGCCTAAGCCAACAAATGAAATGGGTGGGCGGGTGCTCAGCCGACCAGAG
501 GGAATGAACTCCCTATGCCTAAGCCAACAAACGAAATGGGCAGACGGATGCTCAGCCGACCAGAG
* * *
12820 GGGTAGAATGTCCAAGTCGGGGATCGGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCA
566 AGGCAGAATGTCCAAGTCGGGGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCA
* * * * * *
12885 ACTCTCGGTCCAGTCCGATCTTAGATTGGGAATGAACTTAGTATGCTTAGACTGGGGATGAACTT
631 ACCCTCGGTCCAGACCGATCTTAGACTCGAAATGAACTCAGTATGCTTAGACTGGGGATGAACTT
* * *
12950 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGTCGGCCGGAGAGGCCGGCCAG
696 CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGAGTGC-CACTCAGCC-G-GA-GCCGG-C-G
* ** * *
13015 AGAGGCATAATGTGCAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGTTGCCGATCCCGCTGCC
755 ACAGGCATAATGCACAAGCCAGGGATCAGCCCGGTCCCCCTCTACATGCTGCCGATCCCGCTACC
* *
13080 AGTCCTGCTGCCACAGCCCTCGGTCTAGCTGGG
820 AGTCCTGCTGCCACAACCCTCGGTCGAGCTGGG
*
13113 GTTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACT
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACT
13175 GAGCTGACCA
Statistics
Matches: 778, Mismatches: 115, Indels: 52
0.82 0.12 0.06
Matches are distributed among these distances:
844 1 0.00
845 98 0.13
848 4 0.01
849 1 0.00
850 1 0.00
853 2 0.00
855 8 0.01
856 495 0.64
857 14 0.02
858 1 0.00
860 6 0.01
863 2 0.00
865 1 0.00
866 1 0.00
868 2 0.00
869 140 0.18
870 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (852 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTCAA
CCGACTGAAGAGGTAGAATGCGCAAGTCAGGGACCAGCCCGATCCCCCCCTGCTTGCTTCCATAA
CCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACAAGGAATAAACTAT
GTATGCCTAAACCAACCCACGAAACGACAGTGCAGGCGCTCAACCGACCAGAGAGGCAGAATGCG
CAAGCCGAGGATAGACCTAGTCCCCCCTGCGTGCTATCGATCCTACTATCACAACCTTCAATCCG
ATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGC
GCTGAGCCAACCAGAGAGGCAAAACGCACAAGCCGAGAATGAGCCCAGTCCCCTTCTACGTGCTG
TCGATCCCACTGCCACAACCCTCGGTTCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCT
AAGCCAACAAACGAAATGGGCAGACGGATGCTCAGCCGACCAGAGAGGCAGAATGTCCAAGTCGG
GGATCAGCCCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACCCTCGGTCCAGACCGATC
TTAGACTCGAAATGAACTCAGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCA
TGAAACGAGCGTACGAGTGCCACTCAGCCGGAGCCGGCGACAGGCATAATGCACAAGCCAGGGAT
CAGCCCGGTCCCCCTCTACATGCTGCCGATCCCGCTACCAGTCCTGCTGCCACAACCCTCGGTCG
AGCTGGG
Found at i:12940 original size:26 final size:26
Alignment explanation
Indices: 12904--12956 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
12894 CCAGTCCGAT
*
12904 CTTAGATTGGGAATGAACTTAGTATG
1 CTTAGACTGGGAATGAACTTAGTATG
* *
12930 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTAGTATG
12956 C
1 C
12957 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTAGTATG
Found at i:13371 original size:159 final size:159
Alignment explanation
Indices: 13074--13371 Score: 366
Period size: 159 Copynumber: 1.9 Consensus size: 159
13064 TGCCGATCCC
** * * * *
13074 GCTGCCAGTCCTGCTGCCACAGCCCTCGGTCTAGCTGGGGTTTAGACATGGAATGAACTCCGTAT
1 GCTGCCAGTCCCACTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * *
13139 GCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTGAGCTGACCAGAGTGGCATAATGTGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAG
* *
13204 TCAGGGATCAGTTCGATCCCCCTCTGCGT
131 CCAAGGATCAGTTCGATCCCCCTCTGCGT
*
13233 GCTGCCAGTCCCACTGCCACAACCCTCGGT-TTGACTAGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGCCAGTCCCACTGCCACAACCCTCGGTCTAG-CTAGGGCTTAGACATGGAATGAACTCCCTA
* * * ** *
13297 TGCCTAAGCTAACCCACGAAAC-AGGCGTACGGTCGCTCAGCCGGTCGGAGAGGCAGAATGCGCA
65 TGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCA
13361 AGCCAAGGATC
129 AGCCAAGGATC
13372 GACCCGGTCC
Statistics
Matches: 115, Mismatches: 22, Indels: 4
0.82 0.16 0.03
Matches are distributed among these distances:
158 3 0.03
159 112 0.97
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GCTGCCAGTCCCACTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAG
CCAAGGATCAGTTCGATCCCCCTCTGCGT
Found at i:13383 original size:159 final size:158
Alignment explanation
Indices: 13074--13539 Score: 359
Period size: 159 Copynumber: 2.9 Consensus size: 158
13064 TGCCGATCCC
** * * * *
13074 GCTGCCAGTCCTGCTGCCACAGCCCTCGGTCTAGCTGGGGTTTAGACATGGAATGAACTCCGTAT
1 GCTGCCAGTCCCACTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTAT
* * * * * * *
13139 GCCTAAGCCAACCCACGAAACGAGTGTGCGGGCACTGAGCTGACCAGAGTGGCATAATGTGCAAG
66 GCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAG
* * ** *
13204 TCAGGGATCAGTTCGATCCCCCTCTGCGT
131 CCAAGGATCAGCCCGATCCCCC-CTACGT
*
13233 GCTGCCAGTCCCACTGCCACAACCCTCGGT-TTGACTAGGGCTTAGACATGGAATGAACTCCCTA
1 GCTGCCAGTCCCACTGCCACAACCCTCGGTCTAG-CTAGGGCTTAGACATGGAATGAACTCCCTA
* * * ** *
13297 TGCCTAAGCTAACCCACGAAAC-AGGCGTACGGTCGCTCAGCCGGTCGGAGAGGCAGAATGCGCA
65 TGCCTAAGCCAACCCACGAAACGA-GCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCA
*
13361 AGCCAAGGATC-GACCCGGTCCCCCCTACGT
129 AGCCAAGGATCAG-CCCGATCCCCCCTACGT
* ** * * ** ** **
13391 GCTGTC-GATCCTGCTGTCGCAACCCTCGGTCCGGTCT-GATCTTAGAC-TGGGAATGAACTCTA
1 GCTGCCAG-TCCCACTGCCACAACCCTCGGTCTAG-CTAGGGCTTAGACAT-GGAATGAACTCCC
** * * * * * * * * * * **
13453 TATGCCTAAGTTAACGCACGGAACAAACGTGCGGGCGCTGAGCTGGCCGGAGAGGCTTAATGCGC
63 TATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGC
*
13518 AAGCCAGGGATCAGCCCGATCC
128 AAGCCAAGGATCAGCCCGATCC
13540 TTCATGCGTG
Statistics
Matches: 248, Mismatches: 51, Indels: 17
0.78 0.16 0.05
Matches are distributed among these distances:
157 2 0.01
158 121 0.49
159 125 0.50
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (158 bp):
GCTGCCAGTCCCACTGCCACAACCCTCGGTCTAGCTAGGGCTTAGACATGGAATGAACTCCCTAT
GCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGACCAGAGAGGCAGAATGCGCAAG
CCAAGGATCAGCCCGATCCCCCCTACGT
Found at i:13396 original size:527 final size:499
Alignment explanation
Indices: 12218--13457 Score: 1310
Period size: 527 Copynumber: 2.4 Consensus size: 499
12208 ACCGATCCTG
** *
12218 CTGCCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACC
1 CTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * *
12283 CACGAAACGAGTGTGCGGGTGCTCAACCGGCTGAAGAGGTAGAATGCGCAAGCTGGGGACCGGCC
66 CACGAAACG-GTGTGCGGGTGCTCAGCCGGC-GGAGAGGTAGAATGCGCAAGCCGGGGATCGGCC
* * *
12348 CGGTCCCCCCTATGTGCTATCGATCCTGCTGTCGTAACCCTCGGTCCAGTCCGATCTTAGACTGG
129 CGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGG
**
12413 GAATGAACTCCGTATGCTTAGACAAGGAATAAACTTCGTATGCCTAAACCAACCCATGAAACGAG
194 GAATGAACTTAGTATGCTTAGACAAGGAATAAACTTCGTATGCCTAAACCAACCCATGAAACGAG
* * *
12478 CGTGCGGGCGCTCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGCATCAGCCTGGTCCCCCCT
259 CGTACGGGCGCCCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCCT
* * * * * * *
12543 GTGTGCTATCGATCCTGCTGTCACAACCCTTAATCCGGTCCAATCTTAGACTGGGAATGAACTTC
324 ATGTGCGATCGATCCTGCTGCCACAACCCTCAATCAGCTCCAATCTTAGACTGGGAATGAACTCC
* * * * *
12608 GTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCGAAGCCGACCGGAGAGGTAAAATGCA
389 GTATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACGAAGCCGACCAGAGAGGCAAAATGCA
* * * *
12673 CAAGCCGAGAATCGACCCATTCCTCCTCTACGTGCTGTCGGTCCCA
454 CAAGCAGAGAATCGACCCATTCCCCCTCTACGTGCTGCCAGTCCCA
* *
12719 CTGCCACAACCCTCGGTTTGACTGGGGCTTAGCCATGGAATGAACTCCCTATGCCTAAGCCAACA
1 CTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * * * * *
12784 AATGAAATGGGTGGGCGGGTGCTCAGCCGACCAGAGGGGTAGAATGTC-CAAGTCGGGGATCGGC
66 CACGAAA-CGGTGTGCGGGTGCTCAGCCG-GCGGAGAGGTAGAATG-CGCAAGCCGGGGATCGGC
* * * *
12848 CCGGTCCCCCCTGCGTGCTGTCGATCCTACTGTCGCAACTCTCGGTCCAGTCCGATCTTAGATTG
128 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
** * * **
12913 GGAATGAACTTAGTATGCTTAGACTGGGGATGAACTTCGTATGCCTAAGTCAACCCATGAAACGA
193 GGAATGAACTTAGTATGCTTAGACAAGGAATAAACTTCGTATGCCTAAACCAACCCATGAAACGA
* *
12978 GCGTACGGGTGCTCAGTCGGCCGGAGAGGCCGGCCAGAGAGGCATAATGTGCAAGCCAGGG-ATC
258 GCGTAC-GG-G--C-G-C--CC----A-GCCGGCCAGAGAGGCAGAATGCGCAAGCC-GGGCATC
* **
13042 AGCCCGGTCCCCCTCTACATGTTGCCGATCCCGCTGCCAGTCCTGCTGCCACAGCCCTCGGTCTA
309 AGCCCGGTCCCCC-CT--ATG-TG-CGAT----C-G--A-TCCTGCTGCCACAACCCTCAATC-A
**** **
13107 GCTGGGGT-TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGTGTGCGG
360 GCTCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCATGCGG
* * * ** * ** * *
13170 GCACTG-AGCTGACCAGAGTGGCATAATGTGCAAGTCAG-GGATCAGTTCGA-TCCCCCTCTGCG
424 GCAC-GAAGCCGACCAGAGAGGCAAAATGCACAAG-CAGAGAATC-GACCCATTCCCCCTCTACG
13232 TGCTGCCAGTCCCA
486 TGCTGCCAGTCCCA
* *
13246 CTGCCACAACCCTCGGTTTGACTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACC
1 CTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * ** *
13311 CACGAAACAGGCGTAC-GGTCGCTCAGCCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATCGAC
66 CACGAAAC-GGTGTGCGGGT-GCTCAGCCGG-CGGAGAGGTAGAATGCGCAAGCCGGGGATCGGC
* *
13375 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
128 CCGGTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
13440 GGAATGAACTCTA-TATGC
193 GGAATGAACT-TAGTATGC
13458 CTAAGTTAAC
Statistics
Matches: 603, Mismatches: 96, Indels: 54
0.80 0.13 0.07
Matches are distributed among these distances:
501 226 0.37
502 5 0.01
503 1 0.00
505 1 0.00
506 1 0.00
507 1 0.00
509 1 0.00
513 1 0.00
514 42 0.07
515 5 0.01
517 2 0.00
518 2 0.00
519 3 0.00
523 1 0.00
524 1 0.00
526 5 0.01
527 293 0.49
528 12 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (499 bp):
CTGCCACAACCCTCGGTTTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
CACGAAACGGTGTGCGGGTGCTCAGCCGGCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGCCCG
GTCCCCCCTACGTGCTGTCGATCCTGCTGTCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGA
ATGAACTTAGTATGCTTAGACAAGGAATAAACTTCGTATGCCTAAACCAACCCATGAAACGAGCG
TACGGGCGCCCAGCCGGCCAGAGAGGCAGAATGCGCAAGCCGGGCATCAGCCCGGTCCCCCCTAT
GTGCGATCGATCCTGCTGCCACAACCCTCAATCAGCTCCAATCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGCCAACCCACGAAACGAGCATGCGGGCACGAAGCCGACCAGAGAGGCAAAATGCACA
AGCAGAGAATCGACCCATTCCCCCTCTACGTGCTGCCAGTCCCA
Found at i:13457 original size:158 final size:158
Alignment explanation
Indices: 13273--13615 Score: 420
Period size: 158 Copynumber: 2.2 Consensus size: 158
13263 TTGACTAGGG
** ** *
13273 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCTAACCCACGAAACAGGCGTACGGTCGCTCAG
1 CTTAGAC-TGGGAATGAACTCTATATGCCTAAGCTAACCCACGAAACAAACGTACGGGCGCTCAG
* * *
13337 CCGGTCGGAGAGGCAGAATGCGCAAGCCAAGGATC-GACCCGGTCCCCCCTACGTGCTGTCGATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAG-CCCGATCCCCCATACGTGCTGTCGATC
* * * *
13401 CTGCTGTCGCAACCCTCGGTCCGGTCTGAT
129 CTGCAGCCGCAACCCTCGGTCCAGTCCGAT
* * * * *
13431 CTTAGACTGGGAATGAACTCTATATGCCTAAGTTAACGCACGGAACAAACGTGCGGGCGCTGAGC
1 CTTAGACTGGGAATGAACTCTATATGCCTAAGCTAACCCACGAAACAAACGTACGGGCGCTCAGC
* ** * ** *
13496 TGGCCGGAGAGGCTTAATGCGCAAGCCAGGGATCAGCCCGATCCTTCATGCGTGCTGTCGATCCT
66 CGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCATACGTGCTGTCGATCCT
*
13561 GCAGCCGCAACCCTCGGTTCAGTCCGAT
131 GCAGCCGCAACCCTCGGTCCAGTCCGAT
*
13589 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCTATATGC
13616 TTAGACTGGG
Statistics
Matches: 157, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
157 1 0.01
158 155 0.99
159 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCTATATGCCTAAGCTAACCCACGAAACAAACGTACGGGCGCTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGCCAAGGATCAGCCCGATCCCCCATACGTGCTGTCGATCCT
GCAGCCGCAACCCTCGGTCCAGTCCGAT
Found at i:13625 original size:26 final size:26
Alignment explanation
Indices: 13589--13641 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13579 TCAGTCCGAT
*
13589 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
13615 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13641 C
1 C
13642 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13986 original size:26 final size:26
Alignment explanation
Indices: 13957--14009 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13947 CCGGTCAGAT
13957 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13983 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14009 C
1 C
14010 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20783 original size:26 final size:26
Alignment explanation
Indices: 20742--20794 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20732 CCAGTTCGAT
20742 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
20768 CTTAGACTG-GAGATGAACTTCGTATG
1 CTTAGACTGAGA-ATGAACTCCGTATG
20794 C
1 C
20795 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21209 original size:159 final size:158
Alignment explanation
Indices: 20929--21516 Score: 540
Period size: 157 Copynumber: 3.6 Consensus size: 158
20919 GTCTTGCAGT
*
20929 CACAACCCTCGGTCCGACTGGGGCTTGGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * * * * * *
20994 AAATGAGCATACGGGTGCTGAGACGATCGAAGAGGCATAATGCACAACCCGGGGATCGGCTCGAT
66 AAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCATAATGCACAA-GCGAGGATCGGCTCGGT
21059 CCCCCTCTGCATGCTGCCAGTCCCACTAC
130 CCCCCTCTGCATGCTGCCAGTCCCACTAC
* *
21088 CATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * *
21153 AAACGACCGTGCGGGTGCTCAGCCGGCCGGAGAGGCAAAATGCAAAAGTCGAGGATCGAC-CTGG
66 AAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCATAATGCACAAG-CGAGGATCGGCTC-GG
* * * *
21217 TCCCCCTAC-G--TGCTGTCAATCCTACTGC
129 TCCCCCT-CTGCATGCTGCCAGTCCCACTAC
* * * * * **** *
21245 CGCAACCTTTGGTCTG-GTCCAATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCA
1 CACAACCCTCGGTCCGACT-GGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCA
** * *
21308 CGAAACGAGCGTGCGGGCACTCAGCCGACCGGAGAGGCATAATGCACAAGCCAGGGATCAGCTCG
64 CGAAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCATAATGCACAAGCGA-GGATCGGCTCG
* *
21373 GTCCCCCTCTGCAAGCTGTCGATCTCACTGTCGGTCCTGCTTAC
128 GTCCCCCTCTGCATGC--T-G--C-CA--GTC---CC-AC-TAC
* *
21417 CACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACA
1 CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
* * * * * *
21482 AAAGGAGTGTGCAGGCGCTCAACCGACCGAAGAGG
66 AAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGG
21517 TAGAATACGC
Statistics
Matches: 338, Mismatches: 66, Indels: 37
0.77 0.15 0.08
Matches are distributed among these distances:
156 5 0.01
157 121 0.36
158 2 0.01
159 118 0.35
160 1 0.00
161 1 0.00
162 1 0.00
165 2 0.01
167 2 0.01
170 1 0.00
171 1 0.00
172 81 0.24
173 2 0.01
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (158 bp):
CACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACG
AAACGAGCGTGCGGGTGCTCAGCCGACCGGAGAGGCATAATGCACAAGCGAGGATCGGCTCGGTC
CCCCTCTGCATGCTGCCAGTCCCACTAC
Found at i:21626 original size:25 final size:26
Alignment explanation
Indices: 21598--21649 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21588 CCGGTACGAT
21598 CTTAGAC-TGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
*
21623 CTTAGACATGGAATGAACTTCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
21649 C
1 C
21650 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 7 0.28
26 18 0.72
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:21899 original size:196 final size:195
Alignment explanation
Indices: 21566--21937 Score: 573
Period size: 196 Copynumber: 1.9 Consensus size: 195
21556 GTGCTACCGA
* *
21566 TCCTGCTATCGTAACCCTCAGTCCGGTACGATCTTAGACTGGAATGAACTCCGTATGCTTAGACA
1 TCCTGCTACCGTAACCCTCAGTCCGGTACGATCTTAGACTGGAATGAACTCCATATGCTTAGACA
* * * * *
21631 TGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCCGATGCTCAGCCGATCGGA
66 AGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGACGCTCAGCCGACCGGA
*
21696 GAGGCAGAATGCGTAAGCCGCGGATCGGCCCAATCCCCCCCGCGTGCTGTAGATCCTGCTGCTGG
131 GAGGCAGAATGCGTAAGCCGCGGATCGACCCAATCCCCCCCGCGTGCTGTAGATCCTGCTGCTGG
* *
21761 TCCTGCTACCGTAACCCTCGGTCCGGTCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGAC
1 TCCTGCTACCGTAACCCTCAGTCCGGTACGATCTTAGACTG-GAATGAACTCCATATGCTTAGAC
* * * * *
21826 AAGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTTAGCCGGCCGG
65 AAGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGACGCTCAGCCGACCGG
* * *
21891 AGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTG
130 AGAGGCAGAATGCGTAAGCCGCGGATCGACCCAATCCCCCCCGCGTG
21938 TTGTCAATCC
Statistics
Matches: 158, Mismatches: 18, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
195 38 0.24
196 120 0.76
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (195 bp):
TCCTGCTACCGTAACCCTCAGTCCGGTACGATCTTAGACTGGAATGAACTCCATATGCTTAGACA
AGGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACAAGCGTGCAGACGCTCAGCCGACCGGA
GAGGCAGAATGCGTAAGCCGCGGATCGACCCAATCCCCCCCGCGTGCTGTAGATCCTGCTGCTGG
Found at i:22167 original size:159 final size:158
Alignment explanation
Indices: 21818--22256 Score: 481
Period size: 159 Copynumber: 2.8 Consensus size: 158
21808 AACTCCATAT
* * * * * *
21818 GCTTAGACAAGGATTGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCGTGCAGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * **
21883 CCGGCCGGAGAGGCAGAATGCGTAAGCCGGGGATCGACCCGATCCCCCCTGCGTG-TTGTCAATC
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACTCAATC
* * * *
21947 CTACTGTCGCAACCCTCAGTCTGGTTCGA
130 CCACTGCCACAACCCTCAGTCTGGCTCGA
* * * *
21976 TCTTAGAC-TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * *
22040 GCCGGTCGGAGAGGCATAATGCGCAAGCTGAGTATCGGCCCGGTCCCCCTCTGCGTGCTACT-GA
64 GCCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCC-CTGCGTGCTACTCAA
* *
22104 TCCCACTGCCACAACCCTC-GATCTGGCTGGG
128 TCCCACTGCCACAACCCTCAG-TCTGGCTCGA
* * * * * * *
22135 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCTAACCCACAAAACGGGAGTACGGGCACTCAA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAGCGTGCGGGCGCTCAG
*
22200 CCGGTCGGAGAGGCAGAATGTGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
65 CCGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCT
22257 GCCGATCTTG
Statistics
Matches: 230, Mismatches: 45, Indels: 12
0.80 0.16 0.04
Matches are distributed among these distances:
158 105 0.46
159 122 0.53
160 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.18
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGTCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACTCAATCC
CACTGCCACAACCCTCAGTCTGGCTCGA
Found at i:22561 original size:196 final size:196
Alignment explanation
Indices: 22204--22658 Score: 554
Period size: 196 Copynumber: 2.3 Consensus size: 196
22194 ACTCAACCGG
* * * * *
22204 TCGGAGAGGCAGAATGTGCAAGCCGGGGATC-GACCCGATCCCCCCTGCGTGCTGCCGATCTTGT
1 TCGGAGAGGCATAATGCGCAAG-CAGGGATCAG-CCCGATCCCCCCTGCGTGCTGCCGATCCTGC
* * * * *
22268 TGCCGTAACCCTCGGTCCAGTCTGATCTTAAACTATGAATGAACTCCGTATGCTTAGATTGGGGA
64 TACCGCAACCCTCGATCCAGTCTGATCTTAAACTATGAATGAACTCCGTATGCTTAGACTGGCGA
* ** * *
22333 TGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGCCGGCTGGAGAGGC
129 TGAAATCCATATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCTAGAGAGGC
22398 CGA
194 CGA
* * *
22401 TCGGAGAGGCATAATACGCAAGTCAGGGATCAGCCCGATCCCTCCTACGTGCTGCCGATCCTGCT
1 TCGGAGAGGCATAATGCGCAAG-CAGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCT
* * * *
22466 ACTGCAACCCTCGATCCAGTC-GATCTTAGACTGTGAATGAACTCCGTATGGTTAGACTGGCGAT
65 ACCGCAACCCTCGATCCAGTCTGATCTTAAACTATGAATGAACTCCGTATGCTTAGACTGGCGAT
* * * *
22530 GAAATCCATATGCCTAAGTCAACCCACGAAATGGGCGTACGGGCGTTCAGCCAGCTAGAGAGGTC
130 GAAATCCATATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCTAGAGAGGCC
*
22595 GG
195 GA
* * * * * *
22597 CCGGAGAGACATAATGCGTAAGCCGAGGATCAGCTCGGTCCCCCTCTGCGTGCTGCCGATCC
1 TCGGAGAGGCATAATGCGCAAGCAG-GGATCAGCCCGATCCCCC-CTGCGTGCTGCCGATCC
22659 CGCTGCCAGT
Statistics
Matches: 218, Mismatches: 37, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
195 2 0.01
196 128 0.59
197 87 0.40
198 1 0.00
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (196 bp):
TCGGAGAGGCATAATGCGCAAGCAGGGATCAGCCCGATCCCCCCTGCGTGCTGCCGATCCTGCTA
CCGCAACCCTCGATCCAGTCTGATCTTAAACTATGAATGAACTCCGTATGCTTAGACTGGCGATG
AAATCCATATGCCTAAGTCAACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCTAGAGAGGCCG
A
Found at i:23631 original size:26 final size:26
Alignment explanation
Indices: 23580--23632 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
23570 GGCTCAAAAT
**
23580 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCATATG
23606 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGAAATGAACTCCATATG
23632 C
1 C
23633 CTCAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:24789 original size:159 final size:157
Alignment explanation
Indices: 24249--25218 Score: 669
Period size: 159 Copynumber: 6.1 Consensus size: 157
24239 TGCCGGTCTT
* * * *
24249 GCTGCCACAACCCTCGGTCCGACTGGGGCTTGGACATGGAATGAACTCTGTATGCCTCAGCCAAC
1 GCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* ** * * * *
24314 CCATGAAATGAGCGTACGGGCAATGAGTC-GATCGGAGAGGCATAATGCGCAAGTCGGGGATCGG
65 CCACGAAATGAGCGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGG
24378 CCCGATCCACCTCTGCGTGCTGCC-AGTCCC
130 CCCGATCC-CC-CTGCGTGCTGCCGA-TCCC
* * * *
24408 GCTACCACAACCCTCGATTCAG-CTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
1 GCTGCCACAACCCTC-AGTCCGACTG-GGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * * * * * * **
24472 CCCACGAAACG-GTCGTGCAAGCCCTCTGTC-GGTTGGAAAGGCAGAATGCAAAAGCCAAGGATC
64 CCCACGAAATGAG-CGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGATC
* * * *
24535 GGCCTGGTCCCCCTGCGTGCTGTCGATCCT
128 GGCCCGATCCCCCTGCGTGCTGCCGATCCC
* * * ** **
24565 GTTGCTACAACCCTCGGTTTGATCTGATCTTAGAC-TGGGAATGAACTCCGTATGCCTAA-CTCA
1 GCTGCCACAACCCTCAGTCCGA-CTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGC-CA
* * * *
24628 ACCCACGAAATGAGCGTACGGGCGCTGAGCCAG-TCGAAGAGGCATAATGCGCAAGTCGGGGAGT
63 ACCCACGAAATGAGCGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGA-T
* * *
24692 -GGCCCGATCCCCCTTTGCATGCTGTCGGTCCC
127 CGGCCCGATCCCCC--TGCGTGCTGCCGATCCC
* * *
24724 GCTGCCACAACCCCCAGTCCGACTAGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
1 GCTGCCACAACCCTCAGTCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** * * *
24789 CCATGAAATGGGCTTACGGGTGCTCAG-CAGATCGGAGAGGCAGAATGCGTAAGCCAGAGATCGG
65 CCACGAAATGAGCGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGG
* * *
24853 CCCGATCCCTCCTACGTGTTGCCGAT-CT
130 CCCGATCCC-CCTGCGTGCTGCCGATCCC
** * * **** ** *
24881 GACTATCGCAACCCTC-GATCCGGTCCAATCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTC
1 G-CTGCCACAACCCTCAG-TCC-GACTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCC
* * * * * * *
24944 AACCCACGAAACGAGCGTGCGGGCGCTGAGCCAG-CCGGAGAGGCATAATGCACAAGACGGTGAT
62 AACCCACGAAATGAGCGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGAT
* * * * *
25008 CGACCTGGTCCCCCTCTGCGTGCTACCGGTCCC
127 CGGCCCGAT-CCCC-CTGCGTGCTGCCGATCCC
* * * *
25041 GCTGCCACCACCCTC-GATCTGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGTC-A
1 GCTGCCACAACCCTCAG-TCCGACT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * *
25104 TCCACAAAATGAGCGTGTGGGTGCTCAACC-GATCGGAGAGGCAGAATGCACAAGTCGAGGATCA
64 CCCACGAAATGAGCGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGATCG
* ** * *
25168 GCCCGATCCTCCTTGTATGCTGTCGATCCT
129 GCCCGATCC-CCCTGCGTGCTGCCGATCCC
* *
25198 GCTGTCGCAACCCTCAGTCCG
1 GCTGCCACAACCCTCAGTCCG
25219 GTCTGATCTT
Statistics
Matches: 615, Mismatches: 164, Indels: 66
0.73 0.19 0.08
Matches are distributed among these distances:
156 4 0.01
157 141 0.23
158 179 0.29
159 281 0.46
160 10 0.02
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
GCTGCCACAACCCTCAGTCCGACTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACC
CACGAAATGAGCGTACGGGCGCTCAGCCAGATCGGAGAGGCAGAATGCACAAGTCGGGGATCGGC
CCGATCCCCCTGCGTGCTGCCGATCCC
Found at i:24832 original size:316 final size:312
Alignment explanation
Indices: 24286--25246 Score: 970
Period size: 316 Copynumber: 3.0 Consensus size: 312
24276 GCTTGGACAT
* * * ** *
24286 GGAATGAACTCTGTATGCCTCAGC-CAACCCATGAAATGAGCGTACGGGCAATGAGTC-GATCGG
1 GGAATGAACTCCGTATGCCT-AACTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAG-TCGG
* * *
24349 AGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCACCTCTGCGTGCTGCCAGTCCCGCTACC
64 AGAGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCC
* *
24414 ACAACCCTCGATTCAG-CTGAGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACG
129 ACAACCC-CCAGTCAGACTG-GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-G
* * ** ** * * * * * *
24478 AAACGGTCGTGCAAGCCCTCTGTCGGTTGGAAAGGCAGAATGCAAAAGCCAAGGATCGGCCTGGT
191 AAATGGGCGTGCGGGTGCTCAG-CGATCGGAGAGGCAGAATGCAAAAGCC-AGGATCGGCCCGAT
* ** *
24543 CCCCCTGCGTGCTGTCGATCCTGTTGCTACAACCCTCGGTTTGATCTGATCTTAGACTG
254 CCCCCTGCGTGCTGTCGATCCTGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTG
*
24602 GGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGTCGAAG
1 GGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGTCGGAG
* * *
24667 AGGCATAATGCGCAAGTCGGGGAGT-GGCCCGATCCCCCTTTGCATGCTGTCGGTCCCGCTGCCA
66 AGGCATAATGCGCAAGTCGGGGA-TCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCA
* *
24731 CAACCCCCAGTCCGACTAGGGCTCAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAA
130 CAACCCCCAGTCAGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCA-GAA
* * **
24796 ATGGGCTTACGGGTGCTCAGCAGATCGGAGAGGCAGAATGCGTAAGCCAGAGATCGGCCCGATCC
193 ATGGGCGTGCGGGTGCTCAGC-GATCGGAGAGGCAGAATGCAAAAGCCAG-GATCGGCCCGATCC
* * * * **
24861 CTCCTACGTGTTGCCGAT-CTGACTAT-C-GCAACCCTCGATCCGGTCCAATCTTAGACTG
256 C-CCTGCGTGCTGTCGATCCTG--T-TGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTG
** * * * *
24919 GGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCCAGCCGGAG
1 GGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGTCGGAG
* * * * * * *
24984 AGGCATAATGCACAAGACGGTGATCGACCTGGTCCCCCTCTGCGTGCTACCGGTCCCGCTGCCAC
66 AGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
* * * * * * *
25049 CACCCTC-GATCTGACTGGGGCTTAGATATGGAATGAACTCCGTATGCCTAAGTCATCCACA-AA
131 AACCCCCAG-TCAGACT-GGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC-CAGAA
* * * * * *
25112 ATGAGCGTGTGGGTGCTCAACCGATCGGAGAGGCAGAATGCACAAGTCGAGGATCAGCCCGATCC
193 ATGGGCGTGCGGGTGCTC-AGCGATCGGAGAGGCAGAATGCAAAAG-CCAGGATCGGCCCGATCC
* ** * * *
25177 TCCTTGTATGCTGTCGATCCTGCTG-TCGCAACCCTCAGTCCGGTCTGATCTTAGATTG
256 -CCCTGCGTGCTGTCGATCCTGTTGCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTG
25235 GGAATGAACTCC
1 GGAATGAACTCC
25247 ATATTCTTAG
Statistics
Matches: 532, Mismatches: 92, Indels: 42
0.80 0.14 0.06
Matches are distributed among these distances:
314 1 0.00
315 10 0.02
316 309 0.58
317 207 0.39
318 4 0.01
319 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (312 bp):
GGAATGAACTCCGTATGCCTAACTCAACCCACGAAATGAGCGTACGGGCGCTGAGCCAGTCGGAG
AGGCATAATGCGCAAGTCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCAC
AACCCCCAGTCAGACTGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAGAAATG
GGCGTGCGGGTGCTCAGCGATCGGAGAGGCAGAATGCAAAAGCCAGGATCGGCCCGATCCCCCTG
CGTGCTGTCGATCCTGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTG
Found at i:25460 original size:26 final size:26
Alignment explanation
Indices: 25422--25474 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
25412 CCGGTCCGAT
25422 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
25448 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
25474 C
1 C
25475 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:25755 original size:159 final size:159
Alignment explanation
Indices: 25447--25894 Score: 438
Period size: 159 Copynumber: 2.8 Consensus size: 159
25437 AACTCCATAT
* * * * * *** ** *
25447 GCTTAGACATGGAATGAACTCCGTATGCCTAAACCAACCCAAGAAACGAGCGTGTAGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTCCGGGCACTGAG
* * *
25512 CCGGTCGGAGAGGCAGAATGCG-GAAGCCGGGGATCGGCCCGATCCCTCCCTGCGTGCTGTCGAT
66 CCGGCCGGAGAGGCAGAATGCGCG-AGCCGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGAT
* ***
25576 CCTACTTCTGTAACCCTCGGTCCAATCT-GA
130 CCTACTGCCACAACCCTCGGTCCAAT-TGGA
* * ** * *
25606 TCTTAGGC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGGAATGAACGTCCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTCCGGGCACTGA
* * *
25670 GCCGGCCGGAGAGGCATAATGCGCGAGCCGGGGATCGACCCGATCCCTCTCTACGTGCTGTCGGT
65 GCCGGCCGGAGAGGCAGAATGCGCGAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGAT
* * ** *
25735 CTTACTGCCACAACCTTCGGTCCGGTTGGG
130 CCTACTGCCACAACCCTCGGTCCAATTGGA
** * * *
25765 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTCCGGGCACTGAG
* * * ** * *
25830 CTGGCCGGAGAGGTAGAATGCGCAAGCCGGGGATCGGTCCGGTCCC-CCC-GCGTGCTGTCGATC
66 CCGGCCGGAGAGGCAGAATGCGCGAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGATC
25893 CT
131 CT
25895 GCTGTCGAAA
Statistics
Matches: 233, Mismatches: 52, Indels: 10
0.79 0.18 0.03
Matches are distributed among these distances:
157 13 0.06
158 4 0.02
159 214 0.92
160 2 0.01
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.19
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGAACGTCCGGGCACTGAG
CCGGCCGGAGAGGCAGAATGCGCGAGCCGGGGATCGACCCGATCCCTCCCTACGTGCTGTCGATC
CTACTGCCACAACCCTCGGTCCAATTGGA
Found at i:25964 original size:26 final size:26
Alignment explanation
Indices: 25923--25975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
25913 CTGATCCGAT
*
25923 CTTAGACTGAGAATGAACTTTGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
* *
25949 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
25975 C
1 C
25976 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:27070 original size:158 final size:158
Alignment explanation
Indices: 26654--27091 Score: 447
Period size: 157 Copynumber: 2.8 Consensus size: 158
26644 GAACTCTGTA
** * *
26654 GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCA
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
** * * * * **
26719 GCCGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGT-CCCCCTGCGTGCTGTCGATC
66 GTTGACCGAAGAGGCTGAATGCGCAAGTCGGAGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
** *
26783 CTGCTGCCACAACCCTCAATCCGATTCG
131 CCACTGCCACAACCCTCAATCCGACTCG
** * * * * * * *
26811 ATCTTACAC-TAGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGTGGGCGCTG
1 GGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTC
* ** * *
26875 AGTTGACCGAAGAGCCAT-AATGCATAAGTCCGAGATCGGCCCGGTCCCCCTCTGCGTGCTACCG
65 AGTTGACCGAAGAGGC-TGAATGCGCAAGTCGGAGATCGACCCGGTCCCCC-CTGCGTGCTACCG
* ** *
26939 ATCCCACTGTCACAACCCTCGGTCTGACT-G
128 ATCCCACTGCCACAACCCTCAATCCGACTCG
*
26969 GGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCGCTC
1 GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTC
* * * *
27033 AGTTGGCCGAAGAGGCTGAATGTGCAAG-CTGGTGATCGACCCGGTCCCCCCTGCATGCT
65 AGTTGACCGAAGAGGCTGAATGCGCAAGTC-GGAGATCGACCCGGTCCCCCCTGCGTGCT
27092 GTCGATCTTG
Statistics
Matches: 221, Mismatches: 52, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
156 1 0.00
157 93 0.42
158 93 0.42
159 34 0.15
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCA
GTTGACCGAAGAGGCTGAATGCGCAAGTCGGAGATCGACCCGGTCCCCCCTGCGTGCTACCGATC
CCACTGCCACAACCCTCAATCCGACTCG
Found at i:27155 original size:158 final size:158
Alignment explanation
Indices: 26656--27155 Score: 476
Period size: 158 Copynumber: 3.2 Consensus size: 158
26646 ACTCTGTAGG
* * * *
26656 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGAGTGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
26721 CGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCAGT-CCCCCTGCGTGCTGTCGATCCT
66 TGACCGAAGAGGCTGAATGCGCAAGTCGGAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
* * *
26785 GCTGCCACAACCCTCAATCCGAT-TCGAT
131 GCTGCCACAACCCTCGATCCGGTCT-GAC
* * * * * * * *
26813 CTTACAC-TAGGAATGAACTCCATATGCATAAGTCAACCCACGAAATGAGCGTGTGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * * **
26877 TTGACCGAAGAGCCAT-AATGCATAAGTCCGAGATCGGCCCGGTCCCCCTCTGCGTGCTACCGAT
65 TTGACCGAAGAGGC-TGAATGCGCAAGTCGGAGATCGACCCGGTCCCCC-CTGCGTGCTGTCGAT
** * * * * **
26941 CCCACTGTCACAACCCTCGGT-CTGACTGGG
128 CCTGCTGCCACAACCCTCGATCCGGTCTGAC
*
26971 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACG-GACGTGCGGGCGCTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAG-CGTGCGGGCGCTCAG
* * * *
27035 TTGGCCGAAGAGGCTGAATGTGCAAG-CTGGTGATCGACCCGGTCCCCCCTGCATGCTGTCGATC
65 TTGACCGAAGAGGCTGAATGCGCAAGTC-GGAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATC
* * **
27099 TTGCTACCGTAACCCTCGATCCGGTCTGAC
129 CTGCTGCCACAACCCTCGATCCGGTCTGAC
*
27129 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
27156 TTAGACTAGG
Statistics
Matches: 265, Mismatches: 67, Indels: 21
0.75 0.19 0.06
Matches are distributed among these distances:
156 1 0.00
157 111 0.42
158 122 0.46
159 31 0.12
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
TGACCGAAGAGGCTGAATGCGCAAGTCGGAGATCGACCCGGTCCCCCCTGCGTGCTGTCGATCCT
GCTGCCACAACCCTCGATCCGGTCTGAC
Found at i:27158 original size:26 final size:26
Alignment explanation
Indices: 27129--27181 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
27119 CCGGTCTGAC
27129 CTTAGACT-GGGAATGAACTCTGTATG
1 CTTAGACTAGGG-ATGAACTCTGTATG
27155 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCTGTATG
27181 C
1 C
27182 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCTGTATG
Found at i:27596 original size:159 final size:157
Alignment explanation
Indices: 27311--27930 Score: 623
Period size: 159 Copynumber: 3.9 Consensus size: 157
27301 TGCCAGTCTT
** * * *
27311 GCTGCCATGACCCTCGGTCCGACTGGGGCTTGGACATGGAATGAACTCCATATGCCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * * * * *
27376 CCATAAAACGAGCGTACGGGTGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGGC
66 CCACAAAACGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* *
27441 TCGGTCCCCCTCTGCGTGCTGGCAGTCCC
131 CCGGTCCCCC-CTGCGTGCT-GCCGTCCC
* *
27470 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAAC
1 GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * *
27535 CCA-AGAAACGGGCATGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA
66 CCACA-AAACGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* ** *
27599 CCCGATCCCCCCTGCGTGCTATCGATCCT
130 CCCGGTCCCCCCTGCGTGCTGCCG-TCCC
**** ** **** * *
27628 GCTATTGCAACCCTCGGTCTGGTTCAATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAA
1 GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * *
27692 CCCACAAAATGAGCATGCGGGCCCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATTGG
65 CCCACAAAACGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * *
27757 CCCGGTCCCCCTATGCATGCTGCCGGTCTC
130 CCCGGTCCCCC-CTGCGTGCTGCC-GTCCC
* * * *
27787 GCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTGCCAATGCCTAAGACAAC
1 GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* * * * * * *
27852 CCACGAAACAAGCATGCGGGTGCTCAACCGGTCGGAGAGGCGGAATGCGCAAGCCAAGGATCGAC
66 CCACAAAACGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
27917 CCGGTCCCCCCTGC
131 CCGGTCCCCCCTGC
27931 TTCTATCAAT
Statistics
Matches: 370, Mismatches: 84, Indels: 15
0.79 0.18 0.03
Matches are distributed among these distances:
157 2 0.01
158 128 0.35
159 238 0.64
160 2 0.01
ACGTcount: A:0.24, C:0.31, G:0.28, T:0.17
Consensus pattern (157 bp):
GCTGCCACAACCCTCGGTCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
CCGGTCCCCCCTGCGTGCTGCCGTCCC
Found at i:27693 original size:158 final size:159
Alignment explanation
Indices: 27320--27998 Score: 595
Period size: 159 Copynumber: 4.3 Consensus size: 159
27310 TGCTGCCATG
* * * * * *
27320 ACCCTCGGTCCGACTGGGGCTTGGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAAC
1 ACCCTCGGTCTGGCTCGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAAC
* * * * * * * * * *
27385 GAGCGTACGGGTGCTGAGCAGGTCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCTCGGTCCCC
66 GAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCC
** * *
27450 CTCTGCGTGCTGGC-AGTCCCGCTGCCACA
131 CTCTGCGTGCTATCGA-TCCTGCTACCACA
* * * *
27479 ACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCA-AGAAA
1 ACCCTCGGTCTGGCTCGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACA-AAA
* * * *
27543 CGGGCATGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
65 CGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC
***
27608 CC-CTGCGTGCTATCGATCCTGCTATTGCA
130 CCTCTGCGTGCTATCGATCCTGCTACCACA
* * * * *
27637 ACCCTCGGTCTGGTTCAATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAA
1 ACCCTCGGTCTGGCTCGAGCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACAAAA
* * * * * * * *
27701 TGAGCATGCGGGCCCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCC
65 CGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC
* * ** * *
27766 CCTATGCATGCTGCCGGT-CTCGCTGCCACA
130 CCTCTGCGTGCTATCGATCCT-GCTACCACA
* * * * * *
27796 ACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTGCCA-ATGCCTAAGACAACCCACGAAA
1 ACCCTCGGTCTGGCTCGAGCTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCACAAAA
* * * * * *
27860 CAAGCATGCGGGTGCTCAACCGGTCGGAGAGGCGGAATGCGCAAGCCAAGGATCGACCCGGTCCC
65 CGAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCC
* * * **
27925 CC-CTGC-TTCTATCAATCCTTCTACCGTA
130 CCTCTGCGTGCTATCGATCCTGCTACCACA
* * *
27953 ACCCTAGGTCTGG-TCCGATCTTAGAC-TAGGAATGGACTCCATATGC
1 ACCCTCGGTCTGGCT-CGAGCTTAGACAT-GGAATGAACTCCATATGC
27999 TTAGATTGGG
Statistics
Matches: 414, Mismatches: 94, Indels: 26
0.78 0.18 0.05
Matches are distributed among these distances:
156 5 0.01
157 42 0.10
158 133 0.32
159 231 0.56
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (159 bp):
ACCCTCGGTCTGGCTCGAGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACAAAAC
GAGCATGCGGGCGCTCAACAGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCC
CTCTGCGTGCTATCGATCCTGCTACCACA
Found at i:27900 original size:317 final size:316
Alignment explanation
Indices: 27348--27998 Score: 888
Period size: 317 Copynumber: 2.1 Consensus size: 316
27338 GCTTGGACAT
* * ** *
27348 GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCGTACGGGTGCTGAGCAGGTCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCCCTGAGCAGATCGGAG
* * * * *
27413 AGGCATAATGCGCAAGTCGAGGATCGGCTCGGTCCCCCTCTGCGTGCTGGCAGTCCCGCTGCCAC
66 AGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTATGCATGCTGCCAGTCCCGCTGCCAC
* * * *
27478 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATACCTAAGCCAACCCAAGAAA
131 AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCAATACCTAAGACAACCCAAGAAA
** **
27543 CGGGCATGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCC
196 CAAGCATGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCC
* ** * *
27608 CCCTGCGTGCTATCGATCCTGCTATTGCAACCCTCGGTCTGGTTCAATCTTAGACTA
261 CCCTGC-TGCTATCAATCCTGCTACCGCAACCCTAGGTCTGGTCCAATCTTAGACTA
* * * * *
27665 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCCCTGAGCCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCCCTGAGCAGATCGGAG
* * *
27730 AGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTATGCATGCTGCCGGTCTCGCTGCCAC
66 AGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTATGCATGCTGCCAGTCCCGCTGCCAC
* * *
27795 AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTGCCAATGCCTAAGACAACCCACGAAA
131 AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCAATACCTAAGACAACCCAAGAAA
* * ** * *
27860 CAAGCATGCGGGTGCTCAACCGGTCGGAGAGGCGGAATGCGCAAGCCAAGGATCGACCCGGTCCC
196 CAAGCATGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCC
* * * *
27925 CCCTGCTTCTATCAATCCTTCTACCGTAACCCTAGGTCTGGTCCGATCTTAGACTA
261 CCCTGCTGCTATCAATCCTGCTACCGCAACCCTAGGTCTGGTCCAATCTTAGACTA
*
27981 GGAATGGACTCCATATGC
1 GGAATGAACTCCATATGC
27999 TTAGATTGGG
Statistics
Matches: 288, Mismatches: 46, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
316 57 0.20
317 231 0.80
ACGTcount: A:0.24, C:0.31, G:0.27, T:0.18
Consensus pattern (316 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCATACGGGCCCTGAGCAGATCGGAG
AGGCATAATGCGCAAGCCGAGGATCGGCCCGGTCCCCCTATGCATGCTGCCAGTCCCGCTGCCAC
AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCAATACCTAAGACAACCCAAGAAA
CAAGCATGCGGGCGCTCAACAGACCGGAGAGGCAGAATGCGCAAGCCAAGGATCGACCCGATCCC
CCCTGCTGCTATCAATCCTGCTACCGCAACCCTAGGTCTGGTCCAATCTTAGACTA
Found at i:30920 original size:26 final size:26
Alignment explanation
Indices: 30868--30921 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
30858 GGTCTGATCT
**
30868 TAGACTGGGAATGAACTCTGTAGGCC
1 TAGACTGGGAATGAACTCCATAGGCC
* *
30894 TAGACTGGGGATGAACTCCATATGCC
1 TAGACTGGGAATGAACTCCATAGGCC
30920 TA
1 TA
30922 AGTCAAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATAGGCC
Found at i:32072 original size:159 final size:157
Alignment explanation
Indices: 31623--32115 Score: 476
Period size: 159 Copynumber: 3.1 Consensus size: 157
31613 TTAGAACTGC
* * *
31623 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTGCGGGCGCTCAGCCGACCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CGGCCGAAGAG
* * *
31688 ACAGAATGCGCAAGCCGGGGATCGGC-CTGGTCCCCCCCTGCATGCTGTCGATCCTGCTACCACA
65 GCAAAATGCGCAAGCC-GGGATCGGCTC-GGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCACA
* *
31752 ACCCTCAGTTTGGTCTGATCTTAGACTAGG
128 ACCCTCAGTCTGGACTGATCTTAGACTAGG
* * * *
31782 AATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTACGGGCGCTGAGCAGGCCGAAGAG
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGC-GGCCGAAGAG
* * * * ** * * *
31847 GCATAATGCGTAAGTCGAGGATCGGCTCGATCCCCTTCTGTGTGCTGTCGGTCCCGCTACCACAA
65 GCAAAATGCGCAAGCCG-GGATCGGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCACAA
* *
31912 CCCTCGGTCT-GACTGGGA-CTTAGTC-ATGG
129 CCCTCAGTCTGGACT--GATCTTAGACTA-GG
* * * *
31941 AATGAACTCCCTATGCCTAAGCCAACCCATGAAAT-AGGCGTGCGAGCGCTCAGTCGGTCGAAGA
1 AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGA-GCGTGCGGGCGCTCAG-CGGCCGAAGA
* * ** ** *
32005 GGCAAAATGCGCAAGCCAGGGATCGGCTCGGTCCCCCCCCGCGTACTACCGATCCTGCTGTCGCA
64 GGCAAAATGCGCAAGCC-GGGATCGGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCACA
* * * * *
32070 ACCTTC-GATCTAGTCTGATCTTAGATTGGG
128 ACCCTCAG-TCTGGACTGATCTTAGACTAGG
*
32100 AATGAACTTCGTATGC
1 AATGAACTCCGTATGC
32116 TTAAACTGGG
Statistics
Matches: 268, Mismatches: 53, Indels: 26
0.77 0.15 0.07
Matches are distributed among these distances:
158 10 0.04
159 250 0.93
160 8 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (157 bp):
AATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGCGCTCAGCGGCCGAAGAGG
CAAAATGCGCAAGCCGGGATCGGCTCGGTCCCCCCCTGCGTGCTGTCGATCCTGCTACCACAACC
CTCAGTCTGGACTGATCTTAGACTAGG
Found at i:32125 original size:26 final size:26
Alignment explanation
Indices: 32096--32145 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
32086 GATCTTAGAT
*
32096 TGGGAATGAACTTCGTATGCTTAAAC
1 TGGGAATGAACGTCGTATGCTTAAAC
*
32122 TGGGGATGAACGTCGTATGCTTAA
1 TGGGAATGAACGTCGTATGCTTAA
32146 GTCAACCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (26 bp):
TGGGAATGAACGTCGTATGCTTAAAC
Found at i:32484 original size:26 final size:26
Alignment explanation
Indices: 32455--32504 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
32445 TCGGTTCGAT
*
32455 CTTAGAC-TGGGAATGAACTTCGTAAG
1 CTTAGACAT-GGAATGAACTCCGTAAG
*
32481 CTTAGTCATGGAATGAACTCCGTA
1 CTTAGACATGGAATGAACTCCGTA
32505 TGCCTAAGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 20 0.95
27 1 0.05
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTAAG
Found at i:32979 original size:26 final size:26
Alignment explanation
Indices: 32950--33002 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
32940 CTGATCCAAT
*
32950 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
32976 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
33002 C
1 C
33003 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:33619 original size:158 final size:156
Alignment explanation
Indices: 33140--33652 Score: 438
Period size: 158 Copynumber: 3.3 Consensus size: 156
33130 TTGCTGCCAT
* *
33140 AACCCTCGGT-TCGGCTGGGGCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACTCACGAA
1 AACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAA
* * * * * * ***
33204 ATGAGCGTGCGGGCGCTTAGTCGATCGGAGAGGCAGAATGTG-ATGTCGGGGATCGGTTCGGTCC
65 ATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCC
* *
33268 CCCCTGT--T--CG-TCCTGCTATCGC
130 CCCTTGTGCTACCGATCCTGCTGTCGC
* * * **** * * *
33290 AACCTTCGGTC-CGATCCAATCTTAGA-TTGGGAATGAACTTCGTATGCATAAGTCAACCCACGA
1 AACCCTCGGTCTGGCT-GGGGCTTAGACAT-GGAATGAACTTCGTATGCCTAAGCCAACCCACGA
* * * * * * * * *
33353 AACGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGAT-TAGCCCGAT
64 AATGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGA-CCCGGT
** * *
33417 CCCCCTCTACGTGCTACCGATCCCACTGCCAC
128 CCCCCT-T--GTGCTACCGATCCTGCTGTCGC
* * *
33449 AACCCT-GGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
1 AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
* *
33513 TGGGTGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCC
66 TGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCC
33578 CCTTGGGTGCTACCGATCCTGCTGTCGC
131 CCTT--GTGCTACCGATCCTGCTGTCGC
* * * **
33606 AACCCTCGATCTGGTTCGATCTTAGAC-TAGGAATGAACTTCGTATGC
1 AACCCTCGGTCTGGCTGGGGCTTAGACAT-GGAATGAACTTCGTATGC
33653 TTAGACCGAC
Statistics
Matches: 274, Mismatches: 71, Indels: 28
0.73 0.19 0.08
Matches are distributed among these distances:
149 3 0.01
150 80 0.29
151 16 0.06
152 1 0.00
154 2 0.01
156 1 0.00
157 26 0.09
158 129 0.47
159 16 0.06
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.21
Consensus pattern (156 bp):
AACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACGAAA
TGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCC
CCTTGTGCTACCGATCCTGCTGTCGC
Found at i:34242 original size:683 final size:679
Alignment explanation
Indices: 32480--34288 Score: 1918
Period size: 676 Copynumber: 2.7 Consensus size: 679
32470 AACTTCGTAA
* * *
32480 GCTTAGTCATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGTGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG-TTAG
* * * * ** * *
32545 CCGATCAGG-GAGGTAGAATACATAAGCTGGGGATCTACTTGGTCCCCTACTTACGTGCTATCAA
65 CCGA-CCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCCCC--C-T-CGTGCTATCGA
*
32609 TCCTACTACCGCAACCACTCGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAG
125 TCCTACTACCGCAACC-CTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAG
* **
32674 TCAACCCACGAAATGAGCGTGCGGGGCGTTGAGCCGATTGAAGAGGC---AT----AAGTCGGGA
189 TCAACCCACGAAATGAGCGTGC-GGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGTCGGGA
* * * * *
32732 TCAGCCCGGTCCTCCTTTACGTGCTGCCGATCCCATTGCCACAACCCTCGATCC-AGCTGGGGCT
253 TAAGCCCGGTCCACCTCTACGTGCTACCGATCCCACTGCCACAACCCTCGATCCGA-CTGGGGCT
* * * * *
32796 TAGACATGGAATGATCTCCCTATGCCTAAGCCAACCCACGAAATAGGTGTACGAGCGCTCAGTCG
317 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTGCGGGCGCTCAGTGG
* * * * * * **
32861 ACTGGCGAGGTAGAATGCGTAAG-CGAGGATC-AGCTCGGTCCCCCTGCGTGCTGTCGATCCTGC
382 TC-GGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCCGGTCCCCCTGCGTGCTACCGATCCTGC
* * * **
32924 TGTCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGA
445 TGTCGCAACCCTCGATCTGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACCGACGA
* * * * * *
32989 TAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCATTCAGCCGACCGGAGAGGC
510 TAAACTCCGTATGCCTAAGTCAACACACGAAACAAGCATGCGGGCACTCAACCGACCAGAGAGGC
* * * * *
33054 CGACCAGAAAGGCATAATGCATAAGCCAAGGACTAGCCCGATCACCCTTTGCGTGCTGCCGATCC
575 CGACCAGAAAGACATAATGCACAAACCAAGGACTAGCCCGATCACCCTCTACGTGCTGCCGATCC
* * * * * * *
33119 CGCTGTCGGTCTTGCTGCCATAACCCTCGGTTCGGCTGGG
640 CGCTGCCGGTCTCGCTACCACAACCCTCGATCCAGCTGGG
** * *
33159 GCTTAGACATGGAATGAACTTTGTATGCCTAAGCCAACTCACGAAATGAGCGTGCGGGCGCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCG-TTAG
* * * * *
33224 TCGATCGGAGAGGCAGAATGTG-ATG-TCGGGGATCGGTTCGGTCCCCC-C-TG-T-TCG-TCCT
65 CCGACCGGAGAGGCAGAATGCGTAAGCT-GGGGATCGGCTCGGTCCCCCTCGTGCTATCGATCCT
* * * * * * *
33282 GCTATCGCAACCTTCGGTCCGATCCAATCTTAGATTGGGAATGAACTTCGTATGCATAAGTCAAC
129 ACTACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAAC
* * * *
33347 CCACGAAACGAGCGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCGCAAGCCAGGGATTAGC
194 CCACGAAATGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGTC-GGGATAAGC
* * * * *
33412 CCGATCCCCCTCTACGTGCTACCGATCCCACTGCCACAACCCT-GGTCTGGCTGGGGCTTAGACA
258 CCGGTCCACCTCTACGTGCTACCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACA
* * *
33476 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGTGTGCGGGCGCTCAGCCGATCGGA
323 TGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTGCGGGCGCTCAG-TGGTCGGA
* *
33541 GAGGCAAAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTTGGGTGCTACCGATCCTGCTGTCGC
387 GAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCC-TGCGTGCTACCGATCCTGCTGTCGC
* * * * * * *
33606 AACCCTCGATCTGGTTCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACCGACTATGAACT
451 AACCCTCGATCTGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACCGACGATAAACT
* * ** *
33671 CTGTATGCCTAAGTCAACACACGAAACAAGCGTGCGGGCACTCAATTGACCAGAGAGGCC-AGTC
516 CCGTATGCCTAAGTCAACACACGAAACAAGCATGCGGGCACTCAACCGACCAGAGAGGCCGA-CC
* ** * ** * * *
33735 GGATTGACATAATGCACAAATCGGGGA-TCAGCCCGATCCCCCTCTACGTGTTGTCGA-CCCGCT
580 AGAAAGACATAATGCACAAACCAAGGACT-AGCCCGATCACCCTCTACGTGCTGCCGATCCCGCT
33798 GCCGGTC-CGACTACCACAACCCTCGATCCAGCTGGG
644 GCCGGTCTCG-CTACCACAACCCTCGATCCAGCTGGG
* *
33834 GCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACCCATGAAACGAGCGTGCGGGCGTTGAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTT-AG
* * * * *
33899 CCGGCCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCCCGATCCACCCTGCGTGCTACCGATCC
65 CCGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCC-CCCT-CGTGCTATCGATCC
* * *
33964 TACTACCAG-AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTATGCATAAGTCA
128 TACTACC-GCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCA
* * *
34028 ACCCACGAAATGAACGTAC-GGTGTTGAGCCGACCGAAGATGCATAATGCGCAAGTCGGGGATAA
192 ACCCACGAAATGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGTC-GGGATAA
* * * * * * * *
34092 GCTCGGTCCAGCTCTACGTGTTACTGGT-ACAGCTACCACAACCCTCGATCCGACTGGGGCATAG
256 GCCCGGTCCACCTCTACGTGCTACCGATCCCA-CTGCCACAACCCTCGATCCGACTGGGGCTTAG
* * ** * *
34156 ACATGGAATAAACTCCCTATGCCTAAGCCAACCCATGAAACAGACGTGCGGGTGCTCCGTTGGTC
320 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTGCGGGCGCTCAG-TGGTC
* * * *
34221 GGAGAGGCAGGATGTGCAAGCCAGGGATCGACCCGGTCCCCC--C-TG-T--CGATCCTGTTGTC
384 GGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTACCGATCCTGCTGTC
34280 GCAACCCTC
449 GCAACCCTC
34289 AGTCCGGTCC
Statistics
Matches: 931, Mismatches: 168, Indels: 65
0.80 0.14 0.06
Matches are distributed among these distances:
667 20 0.02
668 63 0.07
669 14 0.02
670 4 0.00
671 1 0.00
672 2 0.00
673 1 0.00
674 91 0.10
675 173 0.19
676 205 0.22
677 5 0.01
678 20 0.02
679 73 0.08
680 2 0.00
681 3 0.00
682 75 0.08
683 178 0.19
684 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.21
Consensus pattern (679 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCGTGCGGGCGTTAGC
CGACCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGCTCGGTCCCCCTCGTGCTATCGATCCTAC
TACCGCAACCCTCGGTCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCC
ACGAAATGAGCGTGCGGGTGTTGAGCCGACCGAAGAGGCATAATGCGCAAGTCGGGATAAGCCCG
GTCCACCTCTACGTGCTACCGATCCCACTGCCACAACCCTCGATCCGACTGGGGCTTAGACATGG
AATGAACTCCCTATGCCTAAGCCAACCCATGAAATAGGTGTGCGGGCGCTCAGTGGTCGGAGAGG
CAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCTGCGTGCTACCGATCCTGCTGTCGCAACCC
TCGATCTGATCCAATCTTAGACTAGGAATGAACTCCATATGCTTAGACCGACGATAAACTCCGTA
TGCCTAAGTCAACACACGAAACAAGCATGCGGGCACTCAACCGACCAGAGAGGCCGACCAGAAAG
ACATAATGCACAAACCAAGGACTAGCCCGATCACCCTCTACGTGCTGCCGATCCCGCTGCCGGTC
TCGCTACCACAACCCTCGATCCAGCTGGG
Found at i:34469 original size:310 final size:313
Alignment explanation
Indices: 33808--34519 Score: 807
Period size: 310 Copynumber: 2.3 Consensus size: 313
33798 GCCGGTCCGA
* * *
33808 CTACCACAACCCTCGATCCAGCTGGGGCTTAGACATGGAATGAACTCCGTATACCTAAGCCAACC
1 CTACCACAACCCTCGATCGA-CTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * * * *
33873 CATGAAACGAGCGTGCGGGCGTTGAGCCGGCCGGAGAGGCAGAATGCGTAAGCTAGGGATCGGCC
65 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACC
* * * *
33938 CGATCCACCCTGCGTGCTACCGATCCTACTACCAGAACCCTCGGTCTGGTCTGATCTTAGACTGG
130 CGATCCACCC-GCGTGCTA-CGATCCTACTACCAGAACCCTCAGTCCGGTCCGATCTTAGACTGA
* *** *
34003 GAATGAACTCCTTATGCATAAGTCAACCCACGAAATGAACGTACGGTGTTGAGCCGACCGAAGAT
193 GAATGAACTCCTTATGCATAAGTCAACCCACGAAACGAACGTACGGCACTGAGCCGACCGAAGAG
* *
34068 GCATAATGCGCAAGTCGGGGATAAGCTCGGTCCAGCTCTACGTGTTACTGGTACAG
258 GCATAATGAGCAAGTCGGGGATAAGCTCGGTCCACCTCTACGTGTTACTGGTACAG
* *
34124 CTACCACAACCCTCGATCCGACTGGGGCATAGACATGGAATAAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCGAT-CGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * ** * * *
34189 CATGAAAC-AGACGTGCGGGTGCTCCGTTGGTCGGAGAGGCAGGATGTGCAAGCCAGGGATCGAC
65 CATGAAACGAG-CGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGAC
* ** ** *
34253 CCGGTCC-CCC-C-TG-T-CGATCCTGTTGTC-GCAACCCTCAGTCCGGTCCGATCTTAGATTGA
129 CCGATCCACCCGCGTGCTACGATCCTACTACCAG-AACCCTCAGTCCGGTCCGATCTTAGACTGA
** * *
34312 GAATGAACT-CTGTATGCATAAGTCAACCCACGAAACGAGTGTGCAGGCACTGAGCTGACCGAAG
193 GAATGAACTCCT-TATGCATAAGTCAACCCACGAAACGAACGTAC-GGCACTGAGCCGACCGAAG
* * * * * *
34376 AGGCATAATGAGCAAGTCGGGGATCAGC-CTGGTCCCCCTTTGCGTGCTGT-C-GGTCCTG
256 AGGCATAATGAGCAAGTCGGGGATAAGCTC-GGTCCACCTCTACGTG-T-TACTGGTACAG
*
34434 CTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
1 CTACCACAACCCTCGATC-GACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACC
* * *
34499 CACGAAACGGGCGTACGGGCG
65 CATGAAACGAGCGTGCGGGCG
34520 TGGCTCAAAC
Statistics
Matches: 335, Mismatches: 51, Indels: 26
0.81 0.12 0.06
Matches are distributed among these distances:
308 3 0.01
309 73 0.22
310 132 0.39
311 4 0.01
312 3 0.01
313 1 0.00
315 5 0.01
316 112 0.33
317 2 0.01
ACGTcount: A:0.25, C:0.29, G:0.27, T:0.19
Consensus pattern (313 bp):
CTACCACAACCCTCGATCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCC
GATCCACCCGCGTGCTACGATCCTACTACCAGAACCCTCAGTCCGGTCCGATCTTAGACTGAGAA
TGAACTCCTTATGCATAAGTCAACCCACGAAACGAACGTACGGCACTGAGCCGACCGAAGAGGCA
TAATGAGCAAGTCGGGGATAAGCTCGGTCCACCTCTACGTGTTACTGGTACAG
Found at i:34668 original size:22 final size:24
Alignment explanation
Indices: 34617--34669 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
34607 TCAATTTGGC
*
34617 CAATCTTAGACTAGGAATTGAACT
1 CAATATTAGACTAGGAATTGAACT
34641 CAATATTAGACTAGG-ATT-AACT
1 CAATATTAGACTAGGAATTGAACT
*
34663 CCATATT
1 CAATATT
34670 TGCCTAAGTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 10 0.37
23 3 0.11
24 14 0.52
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (24 bp):
CAATATTAGACTAGGAATTGAACT
Found at i:35044 original size:26 final size:26
Alignment explanation
Indices: 34993--35045 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
34983 CCGATCTGAT
*
34993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
35019 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
35045 C
1 C
35046 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:36244 original size:26 final size:26
Alignment explanation
Indices: 36215--36267 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
36205 CCGGTTTGAT
36215 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
* * *
36241 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
36267 C
1 C
36268 CAAGTCAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:36752 original size:184 final size:184
Alignment explanation
Indices: 36423--36905 Score: 515
Period size: 184 Copynumber: 2.6 Consensus size: 184
36413 TCCGACTAGG
* * *
36423 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGG-AGCTCA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-CTCA
* * * * * * *
36487 GCAGGTTGGAGAGGCAGAATGCGCAAGCCATGGATCGACCTGATCCCCCCTGCGTGCTCTCGATC
65 GCCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTCTCGATA
* ** * * *
36552 CTATTGTCGTAACCCTCGGTCCAGTCCAATCTTACACTGGGAACGAACTCCATCT
130 ATATACTCGGAACCCTCGATCCAGTCCAATCTTACACTGGGAACGAACTCCATAT
* * *
36607 GTTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTGAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * * *
36672 CCGACCGGAGAGGTAGAATGCGTAAGCCAGGGATTGGCTTGGTCCTCCCTACGTGCTAC-CGATA
66 CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCCTACGTGCT-CTCGATA
** * * * *
36736 ATACTACT-GGAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
130 ATA-TACTCGGAACCCTCGATCCAGTCCAATCTTACACTGGGAACGAACTCCATAT
* * * * *
36791 GCTTAGACTGGTGATGAACTCCGTATGTCTAAGTCAACACATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
* * * * * *
36856 CCGATCAGAGAGGCAAAATGCATAAGCC-GAGGATCGGCCCGGTCCCCCCT
66 CCGATCGGAGAGGCAGAATGCGTAAGCCAG-GGATCGACCTGATCCCCCCT
36906 TGCGTGCTGT
Statistics
Matches: 246, Mismatches: 49, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
183 1 0.00
184 241 0.98
185 4 0.02
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG
CCGATCGGAGAGGCAGAATGCGTAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTCTCGATAA
TATACTCGGAACCCTCGATCCAGTCCAATCTTACACTGGGAACGAACTCCATAT
Found at i:36807 original size:26 final size:26
Alignment explanation
Indices: 36766--36817 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
36756 CTGGTCTAAT
36766 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
36792 CTTAGACTGGTG-ATGAACTCCGTATG
1 CTTAGACTGG-GAATGAACTCCGTATG
36818 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:38183 original size:26 final size:26
Alignment explanation
Indices: 38145--38197 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
38135 CCAGTCCGAT
* *
38145 CTTAGATAGGGAATGAACTTCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
38171 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
38197 C
1 C
38198 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:38610 original size:510 final size:511
Alignment explanation
Indices: 37295--38611 Score: 1482
Period size: 510 Copynumber: 2.5 Consensus size: 511
37285 CTTCGTACGG
* ** *
37295 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAATC
1 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAATC
* ** ** * * * *
37360 GGCTAGAGAGGCATAATGTGCAAGTCGGGCATTAGCCCGGTCCCCCTCTGCATGCTGTTGATCCC
66 GACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCC
* * * *
37425 GCTGCCAGTCTTGCTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCATAT
131 GCTGTCAGTCCTGCTACCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
* * * * * * *
37490 GCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCAGTCGGAGAGGTAGAATGTGCAAG
196 GCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGTGCAAG
** * * * *
37555 TTGAGGATCGGCCTGATCCTCTTTGCGTGCTGCTGATCCTGCTACTGGTCCTGCTGTTGCAACCC
261 CCGAGGATC-GCCTGAT-C-C----C---C--C-GA-CCTGCTACTGGTCATACTGCTGCAACCA
** * *
37620 TCAGTCTGGTTCGATCTTAGATTGGGAATGAACTTCATATACTTAGACATGGAATGAACACCGTA
312 TCAGTCCAGTCCGATCTTAGATAGGGAATGAACTTCATATACTTAGACATGGAATGAACACCGTA
** * *
37685 CACCTAAGCCAACCCACGAAATGAGCGTTCAAGCGCTCAACAGGCCGGAGAGGTAGAATGCGCAA
377 CACCTAAGCCAACCCACGAAACAAGCGTTCAAGCGCTCAACAGGCCGGAGAGGCAGAATGCACAA
* * *
37750 GCTGGGGATTAACCCGATCCCCCCTGCGTGCTGTCGATCTTACAGTCACAACCCTCGATCTGGTC
442 GCTAGGGATCAACCCGATCCCCCCTGCGTGCTGTCGATCCTACAGTCACAACCCTCGATCTGGTC
37815 CAATC
507 CAATC
* * * * *
37820 TTAGACTGGGGATGAACTCTGTATGCTTAAGTCAACCCATAAAACAAACGTGCGGACACTCAATC
1 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAATC
* * * *
37885 GATCGGAGAGGCATAATACGA-AAGTCGAGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCT
66 GACCGGAGAGGCATAATGC-ACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCC
*
37949 CGCTGTCAGTCCTGCTACCATAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACTCCGTA
130 CGCTGTCAGTCCTGCTACCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTA
* * * * * * * * *
38014 TGCCAAAGCCAACCCGTAAAACAAGTGTGCAGGTGCTCATTCGACCAGAGAGGCAGAATGTGTAA
195 TGCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGTGCAA
** *
38079 GCCGACAATCGACCTGATCCCCC-A-CTGCTACTGGTCATACTGCTGTAACCAT-AGATCCAGTC
260 GCCGAGGATCG-CCTGATCCCCCGACCTGCTACTGGTCATACTGCTGCAACCATCAG-TCCAGTC
* * * **
38141 CGATCTTAGATAGGGAATGAACTTCGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
323 CGATCTTAGATAGGGAATGAACTTCATATACTTAGACATGGAATGAACACCGTACACCTAAGCCA
*** ** * *
38206 ACCTGTGAAACAAGCGTGT-GGGCGCTCAGAC-GGTCGGAGAGGCAGAATGCACAAGTTAGGGAT
388 ACCCACGAAACAAGCGT-TCAAGCGCTCA-ACAGGCCGGAGAGGCAGAATGCACAAGCTAGGGAT
* * * * * * *
38269 CGACCCGGTCCTCCCTGCGTGCTGTCGATCCTGCTG-CAGCAACCCTCAGTTC-GGTCCAATT
451 CAACCCGATCCCCCCTGCGTGCTGTCGATCCTACAGTCA-CAACCCTC-GATCTGGTCCAATC
* * * * * * **
38330 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAATGAGCGTGTGGGCACTGAGCC
1 TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAATC
* *
38395 AACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGTCGATCCC
66 GACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCC
* *
38460 GCTGTCGGTCCTGCTGCCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
131 GCTGTCAGTCCTGCTACCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
* * *
38525 GCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAACCGGCCAGAGAGGCAGAATGCGCAAG
196 GCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGTGCAAG
*
38590 CC-AGGGATCAGCCCGATCCCCC
261 CCGA-GGATC-GCCTGATCCCCC
38612 TTGTATGTTA
Statistics
Matches: 664, Mismatches: 118, Indels: 35
0.81 0.14 0.04
Matches are distributed among these distances:
509 6 0.01
510 416 0.63
511 7 0.01
512 1 0.00
514 1 0.00
516 1 0.00
519 1 0.00
523 1 0.00
524 2 0.00
525 228 0.34
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (511 bp):
TTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAATC
GACCGGAGAGGCATAATGCACAAGTCGGGGATCAGCCCGGTCCCCCTCTGCGTGCTGTCGATCCC
GCTGTCAGTCCTGCTACCATAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAACTCCGTAT
GCCTAAGCCAACCCATGAAACAAGCGTGCGGGCGCTCAATCGGCCAGAGAGGCAGAATGTGCAAG
CCGAGGATCGCCTGATCCCCCGACCTGCTACTGGTCATACTGCTGCAACCATCAGTCCAGTCCGA
TCTTAGATAGGGAATGAACTTCATATACTTAGACATGGAATGAACACCGTACACCTAAGCCAACC
CACGAAACAAGCGTTCAAGCGCTCAACAGGCCGGAGAGGCAGAATGCACAAGCTAGGGATCAACC
CGATCCCCCCTGCGTGCTGTCGATCCTACAGTCACAACCCTCGATCTGGTCCAATC
Found at i:39430 original size:26 final size:26
Alignment explanation
Indices: 39392--39444 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
39382 GGCTCAAAAT
39392 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATTAACTCTGTATG
39418 CTTAGACAT-GGAATTAACTCTGTATG
1 CTTAGAC-TGGGAATTAACTCTGTATG
39444 C
1 C
39445 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATTAACTCTGTATG
Found at i:39626 original size:26 final size:26
Alignment explanation
Indices: 39588--39639 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
39578 CTAGTTCCAT
*
39588 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
39614 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATGGGAATGAACTCCGTATG
39640 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:39821 original size:25 final size:25
Alignment explanation
Indices: 39785--39834 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
39775 TAGTTCGATC
39785 TTAGAATGGGAATGAACTCCGTATG
1 TTAGAATGGGAATGAACTCCGTATG
39810 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGA-ATGGGAATGAACTCCGTATG
39835 ACTAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 22 0.92
26 2 0.08
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (25 bp):
TTAGAATGGGAATGAACTCCGTATG
Found at i:39938 original size:195 final size:195
Alignment explanation
Indices: 39390--39941 Score: 727
Period size: 196 Copynumber: 2.8 Consensus size: 195
39380 GTGGCTCAAA
* * * * *
39390 ATCTTAGACTGGGAATTAACTCTGTATGCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
*
39455 CCACGAAATGAGCTTACGGACGCTT-AGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGG
66 CCACGAAATGAGCGTACGG-CG-TTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGG
** ** *
39519 CCCGGTCCCCCCTGCATGCTGTTGATCCTGTTGCTGGTCATGCTACCATAACCCTCGATCTAGTT
129 CCCGGTCCCCCCTGCATGCTGTCAATCCTACTACTGGTCATGCTACCATAACCCTCGATCTAGTT
39584 CC
194 CC
39586 ATCTTAGAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
* * * * *
39651 CCACGAAATGAGTGTACGGGCGCTCAACCGGTC-AGAGAGGTAGAATGCGCAAGCTGGGGATAGG
66 CCACGAAATGAGCGTAC-GGCGTTCAGCCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATAGG
** * ** *
39715 CCCGGTCCATCCTGCATGCTATCAATCCTACTACTGGTCATGCTACTGTAACCCTCGGTCTAGTT
129 CCCGGTCCCCCCTGCATGCTGTCAATCCTACTACTGGTCATGCTACCATAACCCTCGATCTAGTT
*
39780 CG
194 CC
*
39782 ATCTTAGAATGGGAATGAACTCCGTATG-TTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
* * ** * *
39846 CCACGAAACGAGCGTACAGGCGTTCAGTCGGTCGAAGAGGCAGAATGTACAAGCCAGGGATCGGC
66 CCACGAAATGAGCGTAC-GGCGTTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGGC
*
39911 CTGG-CCCCCCT-CATGTGCTGTCAATCCTACT
130 CCGGTCCCCCCTGCA--TGCTGTCAATCCTACT
39942 GCCACAACCC
Statistics
Matches: 310, Mismatches: 40, Indels: 13
0.85 0.11 0.04
Matches are distributed among these distances:
193 2 0.01
194 5 0.02
195 107 0.35
196 194 0.63
197 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (195 bp):
ATCTTAGAATGGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
CCACGAAATGAGCGTACGGCGTTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGGCC
CGGTCCCCCCTGCATGCTGTCAATCCTACTACTGGTCATGCTACCATAACCCTCGATCTAGTTCC
Found at i:40152 original size:159 final size:154
Alignment explanation
Indices: 39810--40310 Score: 483
Period size: 158 Copynumber: 3.2 Consensus size: 154
39800 ACTCCGTATG
* * * *
39810 TTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTACAGGCGTTCAGTC
1 TTAGACATGGAATGAACTCCGTATGCCTAAG-CAA-CCACGAAACGAGCGTACGGGCGCTCAGCC
*** * * * *
39875 GGTCGAAGAGGCAGAATGTACAAGCCAGGGATCGGCCTGGCCCCCCTCATG-TGCTGTCAATCCT
64 GGTCG-AGAGGCAGAATACGCAAG-CGGGGATCGACCCGGCCCCCCTC-TGCTGCTGTCGATCCT
* * *
39939 ACTGCCACAACCCTCGGTCCGGTCTGATC
126 GCTGCCACAACCCTCGGTCCAGTCTGAGC
* *
39968 TTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCTACCAAACGAGCGTACGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACC-ACGAAACGAGCGTACGGGCGCTCAGC
*
40032 CGGTCAGAGAGGCATAATACGCAAGTCGGGGATCGACCCGGCCCCCCTCTGCATGCTGTCGATCC
63 CGGTC-GAGAGGCAGAATACGCAAG-CGGGGATCGACCCGGCCCCCCTCTGC-TGCTGTCGATCC
* * * *
40097 CGCTGCCACAATCCTCGGTCTAG-CTGGGGC
125 TGCTGCCACAACCCTCGGTCCAGTCT-GAGC
* * * *
40127 TTAGACATGGAATGAACTCCCTATGCCTAAGCAAAACCATGAAACG-GATGTGCGGGCGCTCAGC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGC--AACCACGAAACGAG-CGTACGGGCGCTCAGC
* * ** *
40191 CGGCCGGAGAGGTAGAATACGCAAGCAGGGGATCGACCCGATCCCCC-CTGCGTGCTGTTGATCC
63 CGGTC-GAGAGGCAGAATACGCAAGC-GGGGATCGACCCGGCCCCCCTCTGC-TGCTGTCGATCC
* * *
40255 TGCTGCCGCAACCCTTGGTCCAGTCTGATC
125 TGCTGCCACAACCCTCGGTCCAGTCTGAGC
*
40285 TTAGA-TTCGGAATGAACTCCGTATGC
1 TTAGACAT-GGAATGAACTCCGTATGC
40311 TTAGACTTGG
Statistics
Matches: 284, Mismatches: 46, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
157 6 0.02
158 153 0.54
159 120 0.42
160 5 0.02
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (154 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCAACCACGAAACGAGCGTACGGGCGCTCAGCCGG
TCGAGAGGCAGAATACGCAAGCGGGGATCGACCCGGCCCCCCTCTGCTGCTGTCGATCCTGCTGC
CACAACCCTCGGTCCAGTCTGAGC
Found at i:41041 original size:26 final size:26
Alignment explanation
Indices: 41004--41055 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
40994 GGCTTAAAAT
*
41004 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
41030 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
41056 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:41328 original size:159 final size:157
Alignment explanation
Indices: 41030--41532 Score: 503
Period size: 159 Copynumber: 3.2 Consensus size: 157
41020 ACTCCGTATG
* *
41030 CTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
41095 CGACAGGAGAGGCAGAATGTGCAAGCCAGGGATCAGCCCAGGCCCCCCCCGCGTGCTGTCAATCC
65 CGACCGGAGAGGCAGAATGCGCAAGCCAGGGATC-GACCAGGTCCCCCCTGCGTGCTGTCGATCC
*
41160 TGCTGCCACAACCCTCAGTTCGGTCTGAT
129 TGCTACCACAACCCTCAGTTCGGTCTGAT
* * *
41189 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
41253 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTTTACGTGCTGCCGATC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGGTCCCCC-CTGCGTGCTGTCGATC
* * * **
41318 CCGCTACCACAATCCTCTG-TCTGG-CTGGGG
128 CTGCTACCACAACCCTCAGTTC-GGTCT-GAT
* * * * ** *
41348 CTTAGACATAGAATGAACTCCCTATGCCTAAGCAAAACCATGAAACG-GACGTGTGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAG-CGTACGGGCGCTCAG
** * * * *
41412 CCGGTCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCCGATCCCCCCTGCGTGCTATTGATCC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCC
** * * *
41477 TGCTACCGTAACCCTCGGTCCTGTCTGAT
129 TGCTACCACAACCCTCAGTTCGGTCTGAT
*
41506 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
41533 ATAGACTTGG
Statistics
Matches: 278, Mismatches: 56, Indels: 21
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 67 0.24
159 209 0.75
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCCTG
CTACCACAACCCTCAGTTCGGTCTGAT
Found at i:43129 original size:26 final size:26
Alignment explanation
Indices: 43078--43130 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
43068 CCGGTCCGAT
* *
43078 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
43104 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
43130 C
1 C
43131 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:44179 original size:159 final size:159
Alignment explanation
Indices: 44004--44378 Score: 468
Period size: 159 Copynumber: 2.4 Consensus size: 159
43994 AGCCGGTCAA
*
44004 AGAGGCATAATGCATAAGTCGGGGA-CTGGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGC
1 AGAGGCATAATGCATAAGTCGGGGATC-AGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGC
* *
44068 CACAACACTCGGTCCGACTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAGCCC-AC
65 CACAACACTCGGTCCGACTAGGGCTTAGACATGGAATCAACTCCCTATGACTAAGCCAACCCGA-
* * *
44132 GATACGGGCATGCGAGCGATCAGTCGGTCGG
129 GAAACGGGCATGCGAGCGATCAGCCGGCCGG
* * * *
44163 AGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGGTCCTGTTGCC
1 AGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCC
* * * * *
44228 ACATCACTCGGTCTGACTAGGGCTTAGAGATGGAATCAACTCCCTATGCCTAATCCAACCCGAGA
66 ACAACACTCGGTCCGACTAGGGCTTAGACATGGAATCAACTCCCTATGACTAAGCCAACCCGAGA
* * *
44293 AATGGGCGTGCGAGCGCTCAGCCGGCCGG
131 AACGGGCATGCGAGCGATCAGCCGGCCGG
* * * * ** * * *
44322 AGATGCAGAATGCACAAGTCGGGGATTAGCCAAGTCCTCC-CTGCGTGCTACCAATCC
1 AGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCC
44379 TACTACCGTA
Statistics
Matches: 185, Mismatches: 29, Indels: 5
0.84 0.13 0.02
Matches are distributed among these distances:
158 13 0.07
159 170 0.92
160 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.27, T:0.19
Consensus pattern (159 bp):
AGAGGCATAATGCATAAGTCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCC
ACAACACTCGGTCCGACTAGGGCTTAGACATGGAATCAACTCCCTATGACTAAGCCAACCCGAGA
AACGGGCATGCGAGCGATCAGCCGGCCGG
Found at i:45143 original size:26 final size:26
Alignment explanation
Indices: 45105--45157 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
45095 TGCTCAAAAT
45105 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
45131 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
45157 C
1 C
45158 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:45485 original size:159 final size:158
Alignment explanation
Indices: 45130--45577 Score: 454
Period size: 159 Copynumber: 2.8 Consensus size: 158
45120 AACTCCGTAT
* *
45130 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * * **
45195 CCGATC-AGAGAGGCAAAATGCGCAAGCTAGGGATTGGCTCGATCCCCCCTGCGTGCTGTCGATC
66 CCGATCGA-AGAGGCAAAATGCACAAGCCGGGGATCGGCACGATCCCCCCTGCGTGCTACCGATC
* * * **
45259 TTGCTGCCGCAACCCTCGGTCTGGTTCGA
130 CTGCTACCACAACCCTCGGTCTGACTCGA
* * * * * *
45288 TCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * *
45352 GTCGATCGAAGAGGCATAATGCACAAGCCGGGGATCGAG-ACGGTCTGCCTCTGCGTGCTACCGG
65 GCCGATCGAAGAGGCAAAATGCACAAGCCGGGGATCG-GCACGATC-CCCCCTGCGTGCTACCGA
* * * *
45416 TCCTGTTACCATAACCCTCGGT-TCGACTGGG
128 TCCTGCTACCACAACCCTCGGTCT-GACTCGA
* * *
45447 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGGTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
45512 CCGGTCGGAGAGGCAGAATGCACAAGCCGGGGATCGTCCCGGTCCCCCCTGCATGCTATCGATCC
66 CCGATCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCACGATCCCCCCTGCGTGCTACCGATCC
45577 T
131 T
45578 ATTGCCGTAA
Statistics
Matches: 233, Mismatches: 50, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
157 1 0.00
158 105 0.45
159 126 0.54
160 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
CCGATCGAAGAGGCAAAATGCACAAGCCGGGGATCGGCACGATCCCCCCTGCGTGCTACCGATCC
TGCTACCACAACCCTCGGTCTGACTCGA
Found at i:45636 original size:26 final size:26
Alignment explanation
Indices: 45606--45658 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
45596 TCTGTCCAAT
* *
45606 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
45632 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
45658 C
1 C
45659 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:46349 original size:26 final size:26
Alignment explanation
Indices: 46312--46362 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
46302 GCTCAAAATC
*
46312 TTAGACTGGGAATGAACTTCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
46338 TTAGACAT-GGAATGAACTCCGTATG
1 TTAGAC-TGGGAATGAACTCCGTATG
46363 CCTAAGCCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:46968 original size:26 final size:26
Alignment explanation
Indices: 46933--46985 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
46923 CCGGTCCGAT
46933 CTTAGGACTGGGAATGAACTCCGTATG
1 CTTAGGACTGGGAATGAACT-CGTATG
*
46960 CTTA-GACTGGGGATGAACTCGTATG
1 CTTAGGACTGGGAATGAACTCGTATG
46985 C
1 C
46986 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 7 0.28
26 14 0.56
27 4 0.16
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGGACTGGGAATGAACTCGTATG
Found at i:47642 original size:26 final size:26
Alignment explanation
Indices: 47606--47658 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
47596 TTGGTCTGAT
47606 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
47632 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
47658 C
1 C
47659 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:48882 original size:26 final size:26
Alignment explanation
Indices: 48862--48931 Score: 131
Period size: 26 Copynumber: 2.7 Consensus size: 26
48852 TCTTAGATGG
48862 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
48888 GGAATGAACTCCGTATGCTTAGACAA
1 GGAATGAACTCCGTATGCTTAGACAA
*
48914 GGAATAAACTCCGTATGC
1 GGAATGAACTCCGTATGC
48932 CTAAGCCAAC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
GGAATGAACTCCGTATGCTTAGACAA
Found at i:50163 original size:26 final size:26
Alignment explanation
Indices: 50122--50174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
50112 CCGGTTCAAT
*
50122 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
50148 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
50174 C
1 C
50175 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:50550 original size:26 final size:26
Alignment explanation
Indices: 50512--50564 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
50502 CCAGTCTAAT
**
50512 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACAAGGAATGAACTCT-GTATG
50538 CTTAGACAAGGAATGAACTCTGTATG
1 CTTAGACAAGGAATGAACTCTGTATG
50564 C
1 C
50565 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCTGTATG
Found at i:51626 original size:25 final size:25
Alignment explanation
Indices: 51598--51648 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
51588 CCAGTCCGAT
*
51598 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGA-TAGGAATGAACACCGTATG
*
51623 CTTAGATAGGAATGAACACTGTATG
1 CTTAGATAGGAATGAACACCGTATG
51648 C
1 C
51649 CTAAGCCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (25 bp):
CTTAGATAGGAATGAACACCGTATG
Found at i:54091 original size:159 final size:156
Alignment explanation
Indices: 53676--54119 Score: 455
Period size: 159 Copynumber: 2.8 Consensus size: 156
53666 CTCTGTATGT
* * *
53676 TTAGACATTGAATGAACTCCGTATTCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
1 TTAG-CATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
53741 GGCCGAAAAGGCAAAATGCGCAAGCCGGGGATCGACCGATCCCCCCTGCGTGCTATCGATCCTAC
65 GGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTATCGATCCCAC
* * *
53806 TATCACAACCCTCAGTCCAGTCTGATC
130 TACCACAACCCTCAGTCCAGGCTGAGC
* * * *
53833 TTA-CACTGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGC
1 TTAGCA-T-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
53897 CGGCCGAAGAAGCATAA-GCAGTAAGTCGGGGATCGGCCTGATCCCTCTCTGTGTGCTATC-ATT
64 CGGCCGAAGAGGCAAAATGC-GCAAGCCGGGGATCGGCC-GATCCC-CCCTGCGTGCTATCGA-T
* * * *
53960 CCCGCTACCACAACCCTCGGT-CTGGCTGGGGC
125 CCCACTACCACAACCCTCAGTCCAGGCT-GAGC
* * * *
53992 TTAGGCATGGAATGAATTCCCTATGCCTAAGCCAACCCAAGAAACGGGCGTGCGGGCGCTCAGCC
1 TTA-GCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
54057 GACCGGAGAGGCAAAATGCGCAAGCCGAGGATCGGCTAGGTCCACCATGTGTGCTATCGATCC
65 GGCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGC-CGATCCCCCCTGCGTGCTATCGATCC
54120 TGCTACTGCA
Statistics
Matches: 232, Mismatches: 43, Indels: 23
0.78 0.14 0.08
Matches are distributed among these distances:
155 2 0.01
156 3 0.01
157 81 0.35
158 26 0.11
159 115 0.50
160 3 0.01
161 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (156 bp):
TTAGCATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCGAAGAGGCAAAATGCGCAAGCCGGGGATCGGCCGATCCCCCCTGCGTGCTATCGATCCCACT
ACCACAACCCTCAGTCCAGGCTGAGC
Found at i:55106 original size:158 final size:158
Alignment explanation
Indices: 54617--55106 Score: 413
Period size: 159 Copynumber: 3.1 Consensus size: 158
54607 TAGAATACAA
* * * * ** *
54617 AAGCCGGGGATCGACCCTAGTCCCCC-TGCGTGGTGGTCTGATCCTACTGCCACAACCCTCGATC
1 AAGCCGGGGATCGGCCCGA-TCCCCCTTACGT-GTTGTC-GATCCCGCTACCACAACCCTCGATC
* * * *
54681 CGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAGCCCATGAAACGAGCGTACA
63 CGGTCCGATCTTAGACTGGGAATGAACTCT-ATATGCCTAAGTCAACCCATGAAACGAGCGTACG
* *
54745 GGCACTAAGCCGGTCGGAGAGGCATAATGCGC
127 GGCGCTAAGCCAGTCGGAGAGGCATAATGCGC
* * * *
54777 AAGCCGGGGAGT-GGCCTGGTCCCCCTTTGCGTGTTGTCGATCCCGCTGCCACAACCCTC-AGTC
1 AAGCCGGGGA-TCGGCCCGATCCCCC-TTACGTGTTGTCGATCCCGCTACCACAACCCTCGA-TC
* * ** * ** * * * *
54840 C-GACTGGGGCTCAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCTTAC
63 CGGTC-CGATCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTAC
* * * *
54903 GGGTGCTCAG-CAGATCGGAGAGGCAGAATGCGT
126 GGGCGCTAAGCCAG-TCGGAGAGGCATAATGCGC
* * * * *
54936 AAGCCAGAGATCGGCCCGATCCCTCC-TACGTGTTGTCGAT-CTGACTATCGCAACCCTCGATCC
1 AAGCCGGGGATCGGCCCGATCCC-CCTTACGTGTTGTCGATCCCG-CTACCACAACCCTCGATCC
* * *
54999 GGTCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
64 GGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTACGGG
* * *
55064 CGCTGAGCCAGCCGGAGAGGCATAATGCAC
129 CGCTAAGCCAGTCGGAGAGGCATAATGCGC
*
55094 AAGACGGGGATCG
1 AAGCCGGGGATCG
55107 ACCTGGTCCC
Statistics
Matches: 257, Mismatches: 58, Indels: 32
0.74 0.17 0.09
Matches are distributed among these distances:
157 3 0.01
158 109 0.42
159 118 0.46
160 21 0.08
161 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.19
Consensus pattern (158 bp):
AAGCCGGGGATCGGCCCGATCCCCCTTACGTGTTGTCGATCCCGCTACCACAACCCTCGATCCGG
TCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCG
CTAAGCCAGTCGGAGAGGCATAATGCGC
Found at i:55334 original size:314 final size:317
Alignment explanation
Indices: 54669--55345 Score: 825
Period size: 317 Copynumber: 2.1 Consensus size: 317
54659 CCTACTGCCA
* * *
54669 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAGCCCATGA
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCT-ATATGCCTAAGTCAACCCACGA
* * * * *
54733 AACGAGCGTACAGGCACTAAGCCGGTCGGAGAGGCATAATGCGCAAGCCGGGGAGTGGCCTGGTC
65 AACGAGCGTACAGGCACTAAGCCAGCCGGAGAGGCATAATGCACAAGACGGGGAGTGACCTGGTC
* * **
54798 CCCCTTTGCGTGTTGTCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTCAGACATGGAAT
130 CCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTCAGACATGGAAT
* * * * * *
54863 GAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCTTACGGGTGCTCAGCAGATCGGAGAGGCA
195 GAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAACAGACCGGAGAGACA
** * *
54928 GAATGCGTAAGCCAGAGATCGGCCCGATCCCTCCTACGTGTTGTCGATCTGACTATCG
260 GAATGCACAAGCCAGAGATCGGCCAGATCCCTCCTACGTGCTGTCGATCTGACTATCG
**
54986 CAACCCTCGATCCGGTCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAA
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAA
* * * *
55051 ACGAGCGTGCGGGCGCTGAGCCAGCCGGAGAGGCATAATGCACAAGACGGGGA-TCGACCTGGT-
66 ACGAGCGTACAGGCACTAAGCCAGCCGGAGAGGCATAATGCACAAGACGGGGAGT-GACCTGGTC
* * * *
55114 CCCCTCTGCG-GCTACCGATCCCGCTGCCACCACCCTC-GATCTGACTGGGGCTTAGATATGGAA
130 CCCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAG-TCCGACTGGGGCTCAGACATGGAA
* ** *
55177 TGAACTCCGTATGCCTAAGCCAA-CCATAAAATGAGCGTGTGGGTGCTCAACCGACCGGAGAGAC
194 TGAACTCCCTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAACAGACCGGAGAGAC
* * * * *
55241 AGAATGCACAAGTC-GAGGATCGGCCAGGT-CCTCCT-TGTATGCTGTCGATCCTG-CTGTTG
259 AGAATGCACAAGCCAGA-GATCGGCCAGATCCCTCCTACG--TGCTGTCGAT-CTGACTATCG
* * *
55300 CAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAACTCCATAT
1 CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTATAT
55346 TCTTAGACAT
Statistics
Matches: 307, Mismatches: 46, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
312 1 0.00
313 8 0.03
314 108 0.35
315 69 0.22
316 10 0.03
317 110 0.36
318 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (317 bp):
CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAA
ACGAGCGTACAGGCACTAAGCCAGCCGGAGAGGCATAATGCACAAGACGGGGAGTGACCTGGTCC
CCCTCTGCGTGCTACCGATCCCGCTGCCACAACCCTCAGTCCGACTGGGGCTCAGACATGGAATG
AACTCCCTATGCCTAAGCCAACCCATAAAATGAGCGTACGGGTGCTCAACAGACCGGAGAGACAG
AATGCACAAGCCAGAGATCGGCCAGATCCCTCCTACGTGCTGTCGATCTGACTATCG
Found at i:55359 original size:26 final size:27
Alignment explanation
Indices: 55330--55381 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
55320 TCTTAGATTG
*
55330 GGAATGAACTCCATAT-TCTTAGACAT
1 GGAATGAACTCCATATGTCTAAGACAT
*
55356 GGAATGAACTCCGTATGTCTAAGACA
1 GGAATGAACTCCATATGTCTAAGACA
55382 ACCCACGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
GGAATGAACTCCATATGTCTAAGACAT
Found at i:55556 original size:26 final size:26
Alignment explanation
Indices: 55518--55570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
55508 CCGGTCCGAT
55518 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
55544 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
55570 C
1 C
55571 CTAAACCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:56952 original size:159 final size:156
Alignment explanation
Indices: 56567--57007 Score: 426
Period size: 159 Copynumber: 2.8 Consensus size: 156
56557 GAACTCTGTT
* * *
56567 GGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGG-GTGCTC
1 GGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGCGT--TC
* * * * * * **
56631 AGTCGACCAGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCCTGTGTGCTTTTGAT
64 AGTCGACCAAAGAGGCAGAATGCGCAAGTC-TGGATCGGCCCGATCCCCCCTGCGTGCTATCAAT
** * *
56696 CCTGCTGCCGCAACCCTCAGTCTGATCTG
128 CCCACTGCCACAACCCTCAGTCCGATCTG
** * * * * **
56725 ATCTTACAC-TAGGAATGAACTC-CATATGCATAAGTCAAACCACGAAACGAGTGTGCGGGCACT
1 GGCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACGAGTGTGC-GGCGTT
* * * *
56788 GAGTCGGCCAAAAAGGCATAATGCGCAAGTCCTGGATCGGCCCGATCCCCCTCTGCGTGCTATCA
63 CAGTCGACCAAAGAGGCAGAATGCGCAAGT-CTGGATCGGCCCGATCCCCC-CTGCGTGCTATCA
*
56853 ATCCCACTGTCACAACCCTCAGTCCGA-CTGG
126 ATCCCACTGCCACAACCCTCAGTCCGATCT-G
* * *
56884 GGCTTAGACATGGACTGAACTCTCTATGCCTAAGCCAACCCACGAAATGGGTGGTGCGGCGTTCA
1 GGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGT-GTGCGGCGTTCA
**
56949 GTCGACTGAAGAGGCAGAATGCGCAAGT-TGGTTATCGGCCC-AGTCCCCCCTGCGTGCTA
65 GTCGACCAAAGAGGCAGAATGCGCAAGTCTGG--ATCGGCCCGA-TCCCCCCTGCGTGCTA
57008 CCGATCCTAC
Statistics
Matches: 225, Mismatches: 45, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
157 4 0.02
158 99 0.44
159 116 0.52
160 6 0.03
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.20
Consensus pattern (156 bp):
GGCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACGAGTGTGCGGCGTTCAG
TCGACCAAAGAGGCAGAATGCGCAAGTCTGGATCGGCCCGATCCCCCCTGCGTGCTATCAATCCC
ACTGCCACAACCCTCAGTCCGATCTG
Found at i:57073 original size:26 final size:26
Alignment explanation
Indices: 57044--57096 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
57034 CCGGTCTGAT
57044 CTTAGACT-GGGAATGAACTCCGTATG
1 CTTAGACTAGGG-ATGAACTCCGTATG
*
57070 CTTAGACTAGGGATGAACTCTGTATG
1 CTTAGACTAGGGATGAACTCCGTATG
57096 C
1 C
57097 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGGATGAACTCCGTATG
Found at i:57521 original size:159 final size:157
Alignment explanation
Indices: 57225--57844 Score: 607
Period size: 159 Copynumber: 3.9 Consensus size: 157
57215 TGCCAATCTT
** * * *
57225 GCTGCCATGACCCTCGGT-TCGACTGGGGCTTGGACATGGAATGAACTCCATATGCCTAAGCCAA
1 GCTGCCACAACCCTCGGTCT-GGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * * * *
57289 CCCATAAAATGAGCGTACGGGCGCTGAGCCGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGG
65 CCCACAAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* *
57354 CTCGATCCCCTTCTGCATGCTGGCAGTCCC
130 CCCGATCCCC-TCTGCATGCT-GCCGTCCC
* *
57384 GCTGCCACAACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAAC
1 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
* *
57449 CCA-AGAAACGGGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGA
66 CCACA-AAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * ** ** *
57513 CCCAATCCCCCCTGTGTGCTATCGATCCT
130 CCCGATCCCCTCTGCATGCTGCCG-TCCC
*** * **** * *
57542 GCTGTTGCAACCCTCGGTCTGGTTCAATCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAA
1 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAA
* * * * * * *
57606 CCCACAAAATGAGCATGCGGGCCCTGAGCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATTGG
65 CCCACAAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGA
* * *
57671 CCCGGTCCCCCTATGCATGCTGCCGGTCTC
130 CCCGAT-CCCCTCTGCATGCTGCC-GTCCC
* * * * *
57701 GCTGCCACAACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTGCCAATGCCTAAGACAAC
1 GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
** * * * *
57766 CCATGAAACAAGCATGCGGGTGCTCAACCGATCGGAGAGGCGGAATGCGCAAGCCAAGGATCGAC
66 CCACAAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
* *
57831 CCGGTCCCCCCTGC
131 CCGATCCCCTCTGC
57845 TTCTACCAAT
Statistics
Matches: 367, Mismatches: 86, Indels: 17
0.78 0.18 0.04
Matches are distributed among these distances:
157 2 0.01
158 126 0.34
159 236 0.64
160 3 0.01
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.18
Consensus pattern (157 bp):
GCTGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAAC
CCACAAAACGAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGAC
CCGATCCCCTCTGCATGCTGCCGTCCC
Found at i:57622 original size:158 final size:158
Alignment explanation
Indices: 57252--57912 Score: 577
Period size: 159 Copynumber: 4.2 Consensus size: 158
57242 TTCGACTGGG
* * * * * *
57252 GCTTGGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAATGAGCGTACGGGCGCTGAG
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAA
* * * * * ** **
57317 CCGATCGGAGAGGCATAATGCGCAAGTCGAGGATCGGCTCGATCCCCTTCTGCATGCTGGC-AGT
66 CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCC-CCTGTGTGCTACCGA-T
* * * *
57381 CCCGCTGCCACAACCCTTGGTCTGGCTGGG
129 CCTGCTGCCACAACCCTCGGTCTGGCTCGA
* * *
57411 GCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCA-AGAAACGGGCATGCGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATA-AAACGAGCATGCGGGCGCTCA
* * *
57475 ACCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGACCCAATCCCCCCTGTGTGCTATCGATC
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGTGTGCTACCGATC
*** * *
57540 CTGCTGTTGCAACCCTCGGTCTGGTTCAA
130 CTGCTGCCACAACCCTCGGTCTGGCTCGA
* * * * * * *
57569 TCTTAGAC-TAGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCCCTGA
1 GCTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCA
* * * * * * * *
57633 GCCGATCGGAGAGGCATAATGCGCAAGCCGAGGATTGGCCCGGT-CCCCCTATGCATGCTGCCGG
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGTG--TGCTACCGA
* * * *
57697 T-CTCGCTGCCACAACCCTCGATCTGACTGGG
128 TCCT-GCTGCCACAACCCTCGGTCTGGCTCGA
* * * *
57728 GCTTAGACATGGAATGAACTGCCA-ATGCCTAAGACAACCCATGAAACAAGCATGCGGGTGCTCA
1 GCTTAGACATGGAATGAACT-CCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCA
* * * *
57792 ACCGATCGGAGAGGCGGAATGCGCAAGCCAAGGATCGACCCGGTCCCCCCTGCT-T-CTACCAAT
65 ACCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTG-TGTGCTACCGAT
* * ** *
57855 CCTTCTACCGTAACCCTAGGTCTGG-TCCGA
129 CCTGCTGCCACAACCCTCGGTCTGGCT-CGA
* *
57885 TCTTAGAC-TAGGAATGGACTCCATATGC
1 GCTTAGACAT-GGAATGAACTCCATATGC
57913 TTAGATTGGG
Statistics
Matches: 399, Mismatches: 88, Indels: 32
0.77 0.17 0.06
Matches are distributed among these distances:
156 5 0.01
157 50 0.13
158 125 0.31
159 209 0.52
160 9 0.02
161 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (158 bp):
GCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCATAAAACGAGCATGCGGGCGCTCAA
CCGATCGGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGTGTGCTACCGATCC
TGCTGCCACAACCCTCGGTCTGGCTCGA
Found at i:57820 original size:317 final size:316
Alignment explanation
Indices: 57262--57912 Score: 899
Period size: 317 Copynumber: 2.1 Consensus size: 316
57252 GCTTGGACAT
* * *
57262 GGAATGAACTCCATATGCCTAAGCCAACCCATAAAATGAGCGTACGGGCGCTGAGCCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATACGGGCCCTGAGCCGATCGGAG
* * * * *
57327 AGGCATAATGCGCAAGTCGAGGATCGGCTCGATCCCCTTCTGCATGCTGGCAGTCCCGCTGCCAC
66 AGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTATGCATGCTGCCAGTCCCGCTGCCAC
* * * * *
57392 AACCCTTGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCAAGAAA
131 AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCAATGCATAAGACAACCCAAGAAA
** *
57457 CGGGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGAGCAAGCCGAGGATCGACCCAATCCC
196 CAAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGAGCAAGCCAAGGATCGACCCAATCCC
* * *** * *
57522 CCCTG-TGTGCTATCGATCCTGCTGTTGCAACCCTCGGTCTGGTTCAATCTTAGACTA
261 CCCTGCT-T-CTACCAATCCTGCTACCGCAACCCTAGGTCTGGTCCAATCTTAGACTA
* * *
57579 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCATGCGGGCCCTGAGCCGATCGGAG
1 GGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATACGGGCCCTGAGCCGATCGGAG
* * * *
57644 AGGCATAATGCGCAAGCCGAGGATTGGCCCGGTCCCCCTATGCATGCTGCCGGTCTCGCTGCCAC
66 AGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTATGCATGCTGCCAGTCCCGCTGCCAC
* * *
57709 AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTGCCAATGCCTAAGACAACCCATGAAA
131 AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCAATGCATAAGACAACCCAAGAAA
* * * **
57774 CAAGCATGCGGGTGCTCAACCGATCGGAGAGGCGGAATGCGCAAGCCAAGGATCGACCCGGTCCC
196 CAAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGAGCAAGCCAAGGATCGACCCAATCCC
* * *
57839 CCCTGCTTCTACCAATCCTTCTACCGTAACCCTAGGTCTGGTCCGATCTTAGACTA
261 CCCTGCTTCTACCAATCCTGCTACCGCAACCCTAGGTCTGGTCCAATCTTAGACTA
*
57895 GGAATGGACTCCATATGC
1 GGAATGAACTCCATATGC
57913 TTAGATTGGG
Statistics
Matches: 290, Mismatches: 43, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
316 54 0.19
317 235 0.81
318 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (316 bp):
GGAATGAACTCCATATGCCTAAGCCAACCCACAAAATGAGCATACGGGCCCTGAGCCGATCGGAG
AGGCATAATGCGCAAGCCGAGGATCGGCCCGATCCCCCTATGCATGCTGCCAGTCCCGCTGCCAC
AACCCTCGATCTGACTGGGGCTTAGACATGGAATGAACTCCCAATGCATAAGACAACCCAAGAAA
CAAGCATGCGGGCGCTCAACCGATCGGAGAGGCAGAATGAGCAAGCCAAGGATCGACCCAATCCC
CCCTGCTTCTACCAATCCTGCTACCGCAACCCTAGGTCTGGTCCAATCTTAGACTA
Found at i:60197 original size:158 final size:155
Alignment explanation
Indices: 59716--60219 Score: 466
Period size: 158 Copynumber: 3.2 Consensus size: 155
59706 CGTGGCTCAA
*
59716 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCTATGAAACGAGTGTGCGGGAGCTC
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTC
* ** * * * * *
59781 AGCCGACTGGAGAGGCAGAATATGCAAGTCGAGGATCGACCCGATCCCCTCAGCATGCTGTCAAT
66 AGCCGAC-CGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGAT
*
59846 CCTACTGCTGCAACCCTCGATCTGATCC
130 CCTACTGC-GCAACCCTCG-TCTGGTCC
* * * * * * * * *
59874 AATCTTACACTGGGAATGAACTCCGTATGCATAAGTCAATCCACGAAACGAGAGTACGGGCGCTG
1 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTC
* * * ** * *
59939 AGCCGACCGAAAAGGCATAATGCGTAAGCCGAGGATC-AGCTTGACCCCCCTCTGCGTGCTGCCG
66 AGCCGACCG-AGAGGCAGAATGCGCAAGCCGAGGATCGA-CCCGATCCCCC-CTGCGTGCTGTCG
* * * *
60003 GTCCCACTAC-CATAACCCTCGGTCT-GT-T
128 ATCCTACTGCGC--AACCCTC-GTCTGGTCC
** * *
60031 AGGGCTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-AGGTGTGCGGGTG
1 A-ATCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-GTGTGCGGGAG
* * *
60094 CTCAGACGGCCAGAGAGGCAGAATGCGCAAGCC-AGGGATCGACCC-AGTCCCCCCTGCGTACTG
63 CTCAGCCGACC-GAGAGGCAGAATGCGCAAGCCGA-GGATCGACCCGA-TCCCCCCTGCGTGCTG
60157 TCGATCCTACTGTCGCAACCCTCAGTCTGGTCC
125 TCGATCCTACTG-CGCAACCCTC-GTCTGGTCC
60190 AATCTTAGACTGGGAATGAACTCCGTATGC
1 AATCTTAGACTGGGAATGAACTCCGTATGC
60220 TTAGACTAGG
Statistics
Matches: 268, Mismatches: 60, Indels: 36
0.74 0.16 0.10
Matches are distributed among these distances:
157 36 0.13
158 200 0.75
159 31 0.12
160 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.25, T:0.20
Consensus pattern (155 bp):
AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGAGCTC
AGCCGACCGAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCGTGCTGTCGATC
CTACTGCGCAACCCTCGTCTGGTCC
Found at i:60234 original size:26 final size:26
Alignment explanation
Indices: 60193--60245 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
60183 CTGGTCCAAT
60193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
60219 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
60245 C
1 C
60246 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:60658 original size:159 final size:159
Alignment explanation
Indices: 60369--60661 Score: 396
Period size: 159 Copynumber: 1.8 Consensus size: 159
60359 TCCCGCTGTT
* * * *
60369 GGTCCTACTGCCACAACCCTCGGTTCGACTAGGGCTTAGACATGGAATGAACTCCGTATGCCTAA
1 GGTCCCACTACCACAACCCTCGGTTCGACTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAA
* * *
60434 GCCAACCCACGAAACGAGCGTGCAGGCACTGAGCTGATCAGAGAGGCACAATGTGCAAGCTGGGG
66 GCCAACCCACGAAACGAGCGTGCAGGCACTCAGCTGACCAGAGAGGCACAATGTGCAAGCCGGGG
60499 ATCGGCCTGGTCCCCCTTTGCGTGCTTTC
131 ATCGGCCTGGTCCCCCTTTGCGTGCTTTC
60528 GGTCCCACTACCACAACCCTCGGCTT-GACT-GGGTCTTAGACATAGAATGAACTCCCTATGCCT
1 GGTCCCACTACCACAACCCTCGG-TTCGACTAGGG-CTTAGACATAGAATGAACTCCCTATGCCT
* * ** * * *
60591 AAGCCAACCCACGAAACGGGCGTGCGGGCGTTCAGCTGGCCGGAGAGGCAGAAT-T-CATAAGCC
64 AAGCCAACCCACGAAACGAGCGTGCAGGCACTCAGCTGACCAGAGAGGCACAATGTGC--AAGCC
60654 GGGGATCG
127 GGGGATCG
60662 ACTCGGTCCC
Statistics
Matches: 116, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
157 1 0.01
158 4 0.03
159 109 0.94
160 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.28, T:0.19
Consensus pattern (159 bp):
GGTCCCACTACCACAACCCTCGGTTCGACTAGGGCTTAGACATAGAATGAACTCCCTATGCCTAA
GCCAACCCACGAAACGAGCGTGCAGGCACTCAGCTGACCAGAGAGGCACAATGTGCAAGCCGGGG
ATCGGCCTGGTCCCCCTTTGCGTGCTTTC
Found at i:60774 original size:26 final size:26
Alignment explanation
Indices: 60722--60775 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
60712 GGTCTGATCT
**
60722 TAGACTCGGAATGAACTCTGTAGGCC
1 TAGACTCGGAATGAACTCCATAGGCC
* * *
60748 TAGACTGGGGATGAACTCCATATGCC
1 TAGACTCGGAATGAACTCCATAGGCC
60774 TA
1 TA
60776 AGTCAAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTCGGAATGAACTCCATAGGCC
Found at i:61968 original size:26 final size:26
Alignment explanation
Indices: 61939--61988 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
61929 GATCTTAGAT
**
61939 TGGGAATGAACTTCGTATGCTTAAAC
1 TGGGAATGAACGCCGTATGCTTAAAC
*
61965 TGGGGATGAACGCCGTATGCTTAA
1 TGGGAATGAACGCCGTATGCTTAA
61989 GTCAACCCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TGGGAATGAACGCCGTATGCTTAAAC
Found at i:62824 original size:26 final size:26
Alignment explanation
Indices: 62795--62847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
62785 CTGATCCAAT
*
62795 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
62821 CTTAGACTGGGGATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
62847 C
1 C
62848 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:64680 original size:26 final size:26
Alignment explanation
Indices: 64651--64703 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
64641 CTGATCCGAT
* *
64651 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
64677 CTTAGACTGGGGATGTACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
64703 C
1 C
64704 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:65356 original size:25 final size:25
Alignment explanation
Indices: 65328--65377 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
65318 CGATCCAATC
65328 TTAGACTAGGAATGAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
* *
65353 TTAGACTAGGGATTAACTCCATATG
1 TTAGACTAGGAATGAACTCCATATG
65378 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (25 bp):
TTAGACTAGGAATGAACTCCATATG
Found at i:65744 original size:26 final size:26
Alignment explanation
Indices: 65693--65745 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
65683 CCGATCCGAT
*
65693 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* * *
65719 CTTAGACTGGGGATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
65745 C
1 C
65746 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:66834 original size:158 final size:157
Alignment explanation
Indices: 66441--66856 Score: 381
Period size: 158 Copynumber: 2.6 Consensus size: 157
66431 AACTCCGTAT
* * *
66441 GCTT-GACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGTGTACGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGTGTGCGGGAGCTCAG
** ** ** **
66505 TCGGCCGGAGAGGCAGAATGCGTAAGCCTGGGATCGACCCGGTCCCCCCCTGTGTGCTGTCGATC
66 -CGG-TTGAGAGGCAGAATGCGTAAGCCAAGGATCGACCCGGTCCCCCCCTACGTGCTACCGATC
*
66570 CTCCAGCCATAACCCTCAGTCCTGTCCAA
129 CTCCAGCCATAACCCTCAGTCCTGGCCAA
* * * * * * *
66599 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTCAACCCACGAAATGAGCGTGCGAGTGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGTGTGCGGGAGCTCA
* * * * *
66663 GCTGATTGAAGAGGCATAATGCGTAAGCCAAGGATCGGCCCGGT-CCCCTCTACGTGCTACCGGT
65 GC-GGTTG-AGAGGCAGAATGCGTAAGCCAAGGATCGACCCGGTCCCCCCCTACGTGCTACCGAT
*** * * * *
66727 CCTGTTGCTATAACCCTCAGTTC-GGCTAGG
128 CCTCCAGCCATAACCCTCAGTCCTGGCCA-A
* * * *
66757 GCTTAGACATGAAATGAACTCCGTATGCTTAAGCCAACCCACGAAACGAATGTGCGGGAGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGTGTGCGGGAGCTCAG
* * * *
66822 CAGGTTAGAGAGGTAGAATCCGTAAGTCGAGGATC
66 C-GGTT-GAGAGGCAGAATGCGTAAGCCAAGGATC
66857 AGATCGGCCC
Statistics
Matches: 203, Mismatches: 48, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
157 3 0.01
158 116 0.57
159 84 0.41
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCCGTATGCATAAGCCAACCCACGAAATGAGTGTGCGGGAGCTCAG
CGGTTGAGAGGCAGAATGCGTAAGCCAAGGATCGACCCGGTCCCCCCCTACGTGCTACCGATCCT
CCAGCCATAACCCTCAGTCCTGGCCAA
Found at i:66967 original size:26 final size:26
Alignment explanation
Indices: 66915--66967 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
66905 CCGGTTTGAT
*
66915 CTTAGACTGGGAATGAACTCTGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
* * *
66941 CTTAGACTGGGGATGAGCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGAATG
66967 C
1 C
66968 CAAGTCAACC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:67347 original size:184 final size:183
Alignment explanation
Indices: 67123--67576 Score: 482
Period size: 184 Copynumber: 2.5 Consensus size: 183
67113 TCCGACTAGG
* * * * *
67123 GCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGAGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAG
*** * * *
67188 CAGGTTGGAGAGGCAGAATGCGCAAGCCATGGATCGACCTGATCCCCCCTGCGTGCT-CTCGATC
66 CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTAC-CGATA
* * *
67252 CTATTGTCGT-AACCCTCGGTCCAGTCCAATCTTACACTGGGAACGAACTCCATCT
130 CTACTG-C-TAAACCCTCGATCCAGTCCAATCTTACACTGGGAACGAACTCCATAT
* * *
67307 GTTTAGATTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCA-CTGA
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGG-AGCTCA
* * * * * * * * *
67371 GCCGACCGGAGAGGTAGAATGCGTAAGCCGGGGATTGGCTTGGTCCTCCCTACGTGCTACCGATA
65 GCAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTACCGATA
** * * * *
67436 CTACTGCTACAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
130 CTACTGCTA-AACCCTCGATCCAGTCCAATCTTACACTGGGAACGAACTCCATAT
* * * *
67491 GCTTAGACTGGTGATGAACTCCGTATGTCTAAGTCAACACATGAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAG
* * * *
67556 CCGATCAGAGAGGCAAAATGC
66 CAGACCGGAGAGGCAGAATGC
67577 ATAAGTCGAG
Statistics
Matches: 222, Mismatches: 43, Indels: 10
0.81 0.16 0.04
Matches are distributed among these distances:
182 1 0.00
183 1 0.00
184 218 0.98
185 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.21
Consensus pattern (183 bp):
GCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAG
CAGACCGGAGAGGCAGAATGCGCAAGCCAGGGATCGACCTGATCCCCCCTACGTGCTACCGATAC
TACTGCTAAACCCTCGATCCAGTCCAATCTTACACTGGGAACGAACTCCATAT
Found at i:67495 original size:26 final size:26
Alignment explanation
Indices: 67466--67517 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
67456 CTGGTCCGAT
67466 CTTAGACTGG-GAATGAACTCCGTATG
1 CTTAGACTGGTG-ATGAACTCCGTATG
67492 CTTAGACTGGTGATGAACTCCGTATG
1 CTTAGACTGGTGATGAACTCCGTATG
67518 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGTGATGAACTCCGTATG
Found at i:68722 original size:870 final size:866
Alignment explanation
Indices: 67445--69141 Score: 1931
Period size: 870 Copynumber: 2.0 Consensus size: 866
67435 ACTACTGCTA
* * *
67445 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTGATGAAC
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGTAATGAAC
* * * * ** * * *
67510 TCCGTATGTCTAAGTCAACACATGAAACGAGCGTGCGGGCGCTCAGCCGATCAGAGAGGCAAAAT
66 ACCGTACGTCTAAGCCAACACACGAAACGAGCGTGCAAGCGCTCAACAGACCAGAGAGGCAAAAT
* * * * * *
67575 GCATAAGTCGAGGATCGGCCCGGTCCCCCCTTACGTGCTGTTGATCCTGCTACCGTAACCCTCAG
131 GCACAAGTCGAGGATCGACCCGGTCCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAG
* * * *
67640 TCCGATCTGATTTTAGACTGGGAATAAACTCTGTATACATAAGTCAACCCACGAACCGAGCGTTC
196 TCCGATCTGATCTTAGACTGGGAATAAACTCCGTATACATAAGTCAACCCACGAAACGAGCGTGC
* * *
67705 GGGTGCTGAGCCAACCGAAGAGGCATAATGCGCAAGCAATGGGTCAACCTGGTCCCCCTCTGCAT
261 GGGTGCTGAGCCAACCGAAGAGGCATAATGCACAAGCAATGGATCAACCTGGTCCCCCTATGCAT
* * *
67770 GCTATCGGTACCGCTGCCACAACCCTCAGTCCGGCTGGGGCTTAGACATGGAATGAACTCCCTAT
326 GCTATCAGTACCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATCGAATGAACTCCCTAT
* * * ** * * ** *
67835 GCCTAAACCGACCCACGAAATGGGTGTGCAGGTGCTCAGTTGGTCGGGGAGCCAAAATGCGTAAG
391 GCCTAAACCAACCCACGAAACGGGTGAGCAGGCACTCAGTCGGCCGAAGAG-CAAAATGCGCAAG
* * * *
67900 CCGAGAATCAGCCCGGTCCCCCC-C-TACGTGCTATCGATCTTGCTACCGCAACCCTCGGTCCGA
455 CCGAGAATCAACCCAGTCCCCCCACATAC-TGC---CGATCCTACTACCGCAACCCTCGGTCC-A
* * * * *
67963 TTC-AATCTTAGACTAGGAATGAACTTCGTACGGTTAGATTGGGGATGAACTCTGTATGCCTAAG
515 GTCTAATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAG
** ** * * ** * * * **
68027 TCAACGTACGAAATGAGCGTGCGGGTGCTCAATCG-GCTAGAAAGGCATAATGTGCAAGCCGGGC
580 TCAACCCACGAAACAAGCATACGGGCACTCAACCGATC-AGAAAGCCATAATGCACAAGCCGGGC
* * ** * * * * *
68091 ATTAGCCCGGTCCCCCTCTGCATGCTGTTGATCCCGCTGCCAGTCTTGCTGCCACAACCCTCGGT
644 ATCAGCCAGGT-CCCCTCTGCATGCTGTCAATCCCACTACCAGTCCTGCTGCCACAACCCTCAGC
** ** * *
68156 CCGGCTGGGGCTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTGCG
708 CCAACTGGCACTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCATGCG
* * * ** *
68221 GGCGCTCAGTCGGCCGGAGAGGTAGAATGTGCAAGTTGGGGATCGACCTGATCCTCTTTGCGTGC
773 GGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCTCTTTGCGTGC
68286 TGCTGATCCTGCTACTGGTCCTGCTATTG
838 TGCTGATCCTGCTACTGGTCCTGCTATTG
* * * *
68315 CAACCCTCGGTCTGGTTCGATCTTAGATTGGGAATGAACTTCATATACTTAGACATGG-AATGAA
1 CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATACTTAGAC-TGGTAATGAA
* * * * * * *
68379 CACCGTACGTCTAAGCCAACCCCACGAAATGAGCGTTCAAGCGCTCAACAGGCCGGAGAGGTAGA
65 CACCGTACGTCTAAGCCAA-CACACGAAACGAGCGTGCAAGCGCTCAACAGACCAGAGAGGCAAA
* * * *
68444 ATGCACAAG-CTGGGGATTGACCCGG-CCCCCCCTGCGTGCTATCGATCTTGC-AGCCGCAACCC
129 ATGCACAAGTC-GAGGATCGACCCGGTCCCCCCCTACGTGCTATCGATCCTGCTA-CCGCAACCC
* * * * * *
68506 T-TGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCATGAAATGAG
192 TCAG-TCCGATCTGATCTTAGACTGGGAATAAACTCCGTATACATAAGTCAACCCACGAAACGAG
* * ** * *
68570 CGTGCGGGTGCTGAGCCGACCGAAGAGGCATAATGCACAAGTCGA-GGATCGGCTTGGTCCCCTT
256 CGTGCGGGTGCTGAGCCAACCGAAGAGGCATAATGCACAAG-CAATGGATCAACCTGGTCCCCCT
* * *
68634 ATGCGTGCTGTCAGT-CCGGCTACCACAACCCTTAGTCCGGCTGGGGCTTAGACATCGAATGAAC
320 ATGCATGCTATCAGTACC-GCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATCGAATGAAC
* * *
68698 TCCCTATGCCTAAGCCAACCCACGAAACGGGTGAGCGGGCACTCAGTCGGCCGAAGAGCAGAATG
384 TCCCTATGCCTAAACCAACCCACGAAACGGGTGAGCAGGCACTCAGTCGGCCGAAGAGCAAAATG
* * * ** *
68763 CGCAAGCCGGGGATCAACCTAGTCCCCCCAGCATACTGCCGATCCTACTGTCGTAACCCTCGGTC
449 CGCAAGCCGAGAATCAACCCAGTCCCCCCA-CATACTGCCGATCCTACTACCGCAACCCTCGGTC
* * * *
68828 CAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGGATGAACTCCGTATGCCTA
513 CAGTCTAATCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTA
* * *
68893 AGTCAACCCACGAAACAAGCATATGGGCACTCAACCGATCGGAGAGCCATAATGCACAAGCCGGG
578 AGTCAACCCACGAAACAAGCATACGGGCACTCAACCGATCAGAAAGCCATAATGCACAAGCCGGG
* ** * ** *
68958 GATCAGGTAGGTCCCCTTTGTGTGCTGTCAATCCCACTACCGGTCCTGCTGCCACAACCCTCAGC
643 CATCAGCCAGGTCCCCTCTGCATGCTGTCAATCCCACTACCAGTCCTGCTGCCACAACCCTCAGC
* * *
69023 CCAACTGGCACTTAGACATGGAATGAACTCCGTATGCCTAAACTAACCCATGAAACGAGCATGCG
708 CCAACTGGCACTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCATGCG
*
69088 GGTGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
773 GGCGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCC
69142 CCTCCTGCGT
Statistics
Matches: 677, Mismatches: 138, Indels: 27
0.80 0.16 0.03
Matches are distributed among these distances:
867 148 0.22
868 127 0.19
869 34 0.05
870 305 0.45
871 60 0.09
872 3 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (866 bp):
CAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCATATACTTAGACTGGTAATGAAC
ACCGTACGTCTAAGCCAACACACGAAACGAGCGTGCAAGCGCTCAACAGACCAGAGAGGCAAAAT
GCACAAGTCGAGGATCGACCCGGTCCCCCCCTACGTGCTATCGATCCTGCTACCGCAACCCTCAG
TCCGATCTGATCTTAGACTGGGAATAAACTCCGTATACATAAGTCAACCCACGAAACGAGCGTGC
GGGTGCTGAGCCAACCGAAGAGGCATAATGCACAAGCAATGGATCAACCTGGTCCCCCTATGCAT
GCTATCAGTACCGCTACCACAACCCTCAGTCCGGCTGGGGCTTAGACATCGAATGAACTCCCTAT
GCCTAAACCAACCCACGAAACGGGTGAGCAGGCACTCAGTCGGCCGAAGAGCAAAATGCGCAAGC
CGAGAATCAACCCAGTCCCCCCACATACTGCCGATCCTACTACCGCAACCCTCGGTCCAGTCTAA
TCTTAGACTAGGAATGAACTCCGTACGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACC
CACGAAACAAGCATACGGGCACTCAACCGATCAGAAAGCCATAATGCACAAGCCGGGCATCAGCC
AGGTCCCCTCTGCATGCTGTCAATCCCACTACCAGTCCTGCTGCCACAACCCTCAGCCCAACTGG
CACTTAGACATGGAATGAACTCCATATGCCTAAACCAACCCACGAAACGAGCATGCGGGCGCTCA
GTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCGATCCTCTTTGCGTGCTGCTGATC
CTGCTACTGGTCCTGCTATTG
Found at i:68873 original size:26 final size:26
Alignment explanation
Indices: 68837--68889 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
68827 CCAGTCTGAT
*
68837 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
68863 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
68889 C
1 C
68890 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:69381 original size:160 final size:159
Alignment explanation
Indices: 68999--69382 Score: 364
Period size: 159 Copynumber: 2.4 Consensus size: 159
68989 TCCCACTACC
* * *
68999 GGTCCTGCTGCCACAACCCTCAGCCCAACTGGCACTTAGACATGGAATGAACTCCGTATGCCTAA
1 GGTCCTGCTGCCACAACCCTCAGTCCGACTGGAACTTAGACATGGAATGAACTCCGTATGCCTAA
** ** * ** * *
69064 ACTAACCCATGAAACGAGCATGCGGGTGCTCAGTCGGCCAGAGAGGCAGAATGCGCAAGCCGGGG
66 ACTAACCCACAAAACGAGCATGCGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGCCGGGA
*
69129 ATCGACCCGATCCCCTCCTGCGTACTGTT
131 ATCGACCCGATCCCCTCCTGCGTACTGCT
* * *** * * * * * *
69158 GATCCTACTGTTGCAACCCTCGGTCTGGTCT-GATCTTAGAC-TAGGAATGAAATCTGTATGCCT
1 GGTCCTGCTGCCACAACCCTCAGTC-CGACTGGAACTTAGACAT-GGAATGAACTCCGTATGCCT
* * ** ** *
69221 -AAGTCAACCCACAAAATGAGTGTGCGGGCACTGGGCCAACCAGAGAGGCATAATGCACAAGCCG
64 AAACT-AACCCACAAAACGAGCATGCGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGCCG
*
69285 TGGAATC-AGCCCGATCCCACT-CTGCGTGCTGCT
128 -GGAATCGA-CCCGATCCC-CTCCTGCGTACTGCT
** *
69318 GGTCCTGCTGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAA
1 GGTCCTGCTGCCACAACCCTCAGTCCGACTGGAACTTAGACATGGAATGAACTCCGTATGCCTAA
69383 CCCAACCTAC
Statistics
Matches: 171, Mismatches: 45, Indels: 16
0.74 0.19 0.07
Matches are distributed among these distances:
158 4 0.02
159 93 0.54
160 70 0.41
161 4 0.02
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (159 bp):
GGTCCTGCTGCCACAACCCTCAGTCCGACTGGAACTTAGACATGGAATGAACTCCGTATGCCTAA
ACTAACCCACAAAACGAGCATGCGGGCACTCAGCCAACCAGAGAGGCAGAATGCACAAGCCGGGA
ATCGACCCGATCCCCTCCTGCGTACTGCT
Found at i:69538 original size:26 final size:26
Alignment explanation
Indices: 69502--69554 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
69492 TCGATTCGAT
*
69502 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
69528 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
69554 C
1 C
69555 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:70615 original size:26 final size:26
Alignment explanation
Indices: 70563--70615 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
70553 CCGTTTCGCT
* *
70563 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
70589 CTTAGACTGGGGATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
70615 C
1 C
70616 CTAAGGCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:70717 original size:184 final size:184
Alignment explanation
Indices: 70378--70717 Score: 412
Period size: 184 Copynumber: 1.8 Consensus size: 184
70368 TCTGGTCGGA
* * ** *
70378 TCTTAGACTAGGAATTAACTCCATATGCTTAGACTGGGGATGAACTCCGTATATGTAAGTCAACC
1 TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGCATACCTAAGGCAACC
* * ** * * **
70443 CACGAAATGGGCGTGCGGGCGCTCAACCGGTCAGAGAGGCAGAATGCACAAGTCGGGGATCAGCC
66 CACGAAATGAGCGTACGGGCGCTCAACCGACCAGAAAGGCAGAATGCACAAGCCAAGGATCAGCC
*
70508 CGGTCCCCCCTACATGCTGTCGATCCTACCGTCGCAATCTTCGGTCCGTTTCGC
131 CGGTCCCCCCTACATGCTATCGATCCTACCGTCGCAATCTTCGGTCCGTTTCGC
* * * *
70562 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGGATGAACTCCGCATGCCTAAGGCAACC
1 TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGCATACCTAAGGCAACC
** * * * *
70627 CGTGAAATGAGCGTACGGGCGCTCAGCCGACC-GAAAAGGCATAATGCGCAAGCCAAGGATCAGT
66 CACGAAATGAGCGTACGGGCGCTCAACCGACCAG-AAAGGCAGAATGCACAAGCCAAGGATCAGC
* * * *
70691 CCGGTCCCCTCTGCGTGTTATCGATCC
130 CCGGTCCCCCCTACATGCTATCGATCC
70718 CGCGGTCGGT
Statistics
Matches: 127, Mismatches: 28, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
183 1 0.01
184 126 0.99
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (184 bp):
TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGCATACCTAAGGCAACC
CACGAAATGAGCGTACGGGCGCTCAACCGACCAGAAAGGCAGAATGCACAAGCCAAGGATCAGCC
CGGTCCCCCCTACATGCTATCGATCCTACCGTCGCAATCTTCGGTCCGTTTCGC
Found at i:70960 original size:26 final size:26
Alignment explanation
Indices: 70931--70981 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
70921 GGTCCGAGCT
*
70931 TAGACAGGGAATGAACTTCGTATGCA
1 TAGACAGGGAATGAACTCCGTATGCA
*
70957 TAGACATGGAATGAACTCCGTATGC
1 TAGACAGGGAATGAACTCCGTATGC
70982 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (26 bp):
TAGACAGGGAATGAACTCCGTATGCA
Found at i:71142 original size:26 final size:26
Alignment explanation
Indices: 71113--71165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
71103 CCGGTCTGAT
71113 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
71139 CTTAGACTGGGGATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
71165 C
1 C
71166 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:71215 original size:184 final size:184
Alignment explanation
Indices: 70906--71238 Score: 413
Period size: 184 Copynumber: 1.8 Consensus size: 184
70896 GGTCCTCCGC
*
70906 CGCAACCCTCGATTCGGTCCGAGCTTAGACAGGGAATGAACTTCGTATGCATAGACATGGAATGA
1 CGCAACCCTCGATCCGGTCCGAGCTTAGACAGGGAATGAACTTCGTATGCATAGACATGGAATGA
* * * * * *
70971 ACTCCGTATGCCTAAGCCAACCCATGAAACGGGCATGTGTGCACTCAGCCAGTCAGAGAGGCAGA
66 ACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCAGCCAGAGAGGCAGA
71036 ATG-CACAAGCCGGGGATCGGCCCAGTCCCCCCTAGGTGCTGTCGATCCTACTAT
131 ATGTCA-AAGCCGGGGATCGGCCCAGTCCCCCCTAGGTGCTGTCGATCCTACTAT
* * * * *
71090 CGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGAC-TGGGGAT
1 CGCAACCCTCGATCCGGTCCGAGCTTAGACAGGGAATGAACTTC-GTATGCATAGACAT-GGAAT
* * * * * **
71153 GAACTCTGTATGCCTAAGTCAACTAACGAAATGAGCGTGCGGGTGCTCAGCC-GACCAGAGAGGC
64 GAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCAG-CCAGAGAGGC
* *
71217 AGGATGTGAAAGCCGGGGATCG
128 AGAATGTCAAAGCCGGGGATCG
71239 AATGGGTGAC
Statistics
Matches: 124, Mismatches: 21, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
183 4 0.03
184 119 0.96
185 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.20
Consensus pattern (184 bp):
CGCAACCCTCGATCCGGTCCGAGCTTAGACAGGGAATGAACTTCGTATGCATAGACATGGAATGA
ACTCCGTATGCCTAAGCCAACCAACGAAACGAGCATGCGGGCACTCAGCCAGCCAGAGAGGCAGA
ATGTCAAAGCCGGGGATCGGCCCAGTCCCCCCTAGGTGCTGTCGATCCTACTAT
Found at i:72378 original size:26 final size:26
Alignment explanation
Indices: 72339--72389 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
72329 AATCTGATCA
72339 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
72365 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
72390 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:72816 original size:159 final size:157
Alignment explanation
Indices: 72525--72998 Score: 436
Period size: 158 Copynumber: 3.0 Consensus size: 157
72515 TCCTACTACG
* ** * * *
72525 ACAACCCTCGGTCCGACTGGGGCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAACCCACGA
1 ACAACCCTCAGTCCGGTTGGAGCTTAGAC-AGGAATGAACTCCATATGCCTAAGCCAACCCATGA
* * * * * * * *
72590 AACGACCGTGCAGG-CGCTCAGCCGACCGGAGAGGCAGAATGTGCAAGCCGAGGATCGACCTGAT
65 AATGAGCGTGCAGGTAG-TCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGAT
*
72654 CCCCCCTTACGTGCTATCGATCCTGCTGTC
129 CCCCCCTT-CGTGCTATCGATCCTGCTGCC
** * * *
72684 GTAACCCTCAGTCCGGTCT-GATCTTAGACTAGGAATGAACTCTATATGCCTAAGTCAACCCATG
1 ACAACCCTCAGTCCGGT-TGGAGCTTAGAC-AGGAATGAACTCCATATGCCTAAGCCAACCCATG
** * * * *
72748 AAATGAGCGTGCAGGTAGAGAGCCGATCGGAGAGGCATAATACGCATGCCGGGGATCGGCCC-AG
64 AAATGAGCGTGCAGGTAGTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGA-
* *
72812 TCCCCCTCTGT-GTGCTACCG-TCTTGCTGCC
128 TCCCCC-CT-TCGTGCTATCGATCCTGCTGCC
* * * *
72842 ACAACCCTCGGTCTGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGA
1 ACAACCCTCAGTCCGGTTGGAGCTTAGACA-GGAATGAACTCCATATGCCTAAGCCAACCCATGA
* * * * * * * * *
72907 ACTGGGCGTGCGGGTACTTAGCCGGCCGGAGAGGCAAAATGCACAAGCCAGGGATCGACCCGATC
65 AATGAGCGTGCAGGTAGTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATC
* * *
72972 ACCCCTGCGTGCTGTCGATCCTGCTGC
130 CCCCCTTCGTGCTATCGATCCTGCTGC
72999 GCAGAATGCA
Statistics
Matches: 249, Mismatches: 56, Indels: 21
0.76 0.17 0.06
Matches are distributed among these distances:
157 11 0.04
158 121 0.49
159 112 0.45
160 4 0.02
161 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.19
Consensus pattern (157 bp):
ACAACCCTCAGTCCGGTTGGAGCTTAGACAGGAATGAACTCCATATGCCTAAGCCAACCCATGAA
ATGAGCGTGCAGGTAGTCAGCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCCCGATCC
CCCCTTCGTGCTATCGATCCTGCTGCC
Done.