Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168475.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_74, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 125787
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Warning! 1000 characters in sequence are not A, C, G, or T
File 2 of 2
Found at i:73017 original size:13 final size:13
Alignment explanation
Indices: 72999--73023 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
72989 ATCCTGCTGC
72999 GCAGAATGCACAG
1 GCAGAATGCACAG
73012 GCAGAATGCACA
1 GCAGAATGCACA
73024 AGCCAACCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.28, T:0.08
Consensus pattern (13 bp):
GCAGAATGCACAG
Found at i:73563 original size:11 final size:11
Alignment explanation
Indices: 73547--73579 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
73537 CGGTTAGGCT
73547 CTCCGACGATG
1 CTCCGACGATG
73558 CTCCGACGATG
1 CTCCGACGATG
73569 CTCCGACGATG
1 CTCCGACGATG
73580 GTGCCCCGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:74766 original size:26 final size:26
Alignment explanation
Indices: 74737--74788 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
74727 CTGATCCGAT
*
74737 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
74763 CTTAGACTGGGGATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
74789 TGTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:75144 original size:26 final size:26
Alignment explanation
Indices: 75115--75167 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
75105 CCAGTCTGAT
75115 CTTAGAC-TAGGAATGAACTCCATATG
1 CTTAGACAT-GGAATGAACTCCATATG
*
75141 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCATATG
75167 C
1 C
75168 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCATATG
Found at i:76165 original size:25 final size:25
Alignment explanation
Indices: 76132--76184 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 25
76122 CTCGGTCCTG
76132 TCCGATC-TTAGAC-TGGGAATGAAC
1 TCCGATCTTTAGACAT-GGAATGAAC
76156 TCCGTATCTTTAGACATGGAATGAAC
1 TCCG-ATCTTTAGACATGGAATGAAC
76182 TCC
1 TCC
76185 ATATGCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 4 0.15
25 3 0.12
26 18 0.69
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (25 bp):
TCCGATCTTTAGACATGGAATGAAC
Found at i:76512 original size:159 final size:158
Alignment explanation
Indices: 76165--76525 Score: 381
Period size: 158 Copynumber: 2.3 Consensus size: 158
76155 CTCCGTATCT
* * *
76165 TTAGACATGGAATGAACTCCATATGCCTAAGCCAGCCCTCGAAACGAGCGTACGGGCACTCAGTC
1 TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCC
*** * * * * * *
76230 GTTTGGAGAGGCAGAACGCACAAGCCAGGGATCGACTCGGTCCCCCCTGCGTGCTGTCGATCCTG
66 GACCGGAGAGGCAGAACGCACAAGCCAGGGATCAACCCGATCCCCCCTACATGCTGTCGATCCCG
* * *
76295 TTGCCTCAACCCTCAGTCCGGTCTGATC
131 TTGCCACAACCCTCAGTCCGATCTGAGC
* * * * * *
76323 TTAGAC-TGGAAATGAACTCCGTATGTCTAAGTCAACCCAAGAAACGAGCGTACGGGCATTGAGC
1 TTAGACATGG-AATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGC
* * * * *
76387 CGACCGGAGAGGCATAATC-CGCAAGTCAGGGATCAACCCGATACCCCTCTACATGCTG-CTGGT
65 CGACCGGAGAGGCAGAA-CGCACAAGCCAGGGATCAACCCGAT-CCCCCCTACATGCTGTC-GAT
* *
76450 CCCGTTGCCACAACCCTCGGTCCGAT-TGGGGC
127 CCCGTTGCCACAACCCTCAGTCCGATCT-GAGC
76482 TTAGACATGGAATGAACTTCC-TATGCCTAAGCCAACCCACGAAA
1 TTAGACATGGAATGAAC-TCCATATGCCTAAGCCAACCCACGAAA
76526 TGGGCGTGTG
Statistics
Matches: 165, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
157 3 0.02
158 84 0.51
159 72 0.44
160 6 0.04
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.20
Consensus pattern (158 bp):
TTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCC
GACCGGAGAGGCAGAACGCACAAGCCAGGGATCAACCCGATCCCCCCTACATGCTGTCGATCCCG
TTGCCACAACCCTCAGTCCGATCTGAGC
Found at i:76668 original size:26 final size:26
Alignment explanation
Indices: 76639--76694 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
76629 CCGGTCTGAT
76639 CTTAGAAT-GGGAATGAACTCCGTATG
1 CTTAGAATAGGG-ATGAACTCCGTATG
*
76665 CTTAGACTAGGGATGAACTCCGTATG
1 CTTAGAATAGGGATGAACTCCGTATG
76691 CTTA
1 CTTA
76695 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 25 0.89
27 3 0.11
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGAATAGGGATGAACTCCGTATG
Found at i:76748 original size:13 final size:13
Alignment explanation
Indices: 76730--76754 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
76720 GACGCTCAGC
76730 CGATCGGAGAGGT
1 CGATCGGAGAGGT
76743 CGATCGGAGAGG
1 CGATCGGAGAGG
76755 CATAATACGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.48, T:0.12
Consensus pattern (13 bp):
CGATCGGAGAGGT
Found at i:76814 original size:12 final size:12
Alignment explanation
Indices: 76797--76824 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
76787 CCCTCTGCGT
76797 GCTGTCGATCTC
1 GCTGTCGATCTC
76809 GCTGTCGATCTC
1 GCTGTCGATCTC
76821 GCTG
1 GCTG
76825 CCAGTCCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.32, G:0.29, T:0.32
Consensus pattern (12 bp):
GCTGTCGATCTC
Found at i:77066 original size:26 final size:26
Alignment explanation
Indices: 77016--77068 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
77006 CCGGTCCGAT
* **
77016 CTTAGATAGGGAATGAACTTTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
77042 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
77068 C
1 C
77069 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:78302 original size:26 final size:26
Alignment explanation
Indices: 78264--78316 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
78254 GGCTCAAAAT
78264 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATTAACTCCGTATG
*
78290 CTTAGACAT-GGAATTAACTCTGTATG
1 CTTAGAC-TGGGAATTAACTCCGTATG
78316 C
1 C
78317 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATTAACTCCGTATG
Found at i:78694 original size:26 final size:26
Alignment explanation
Indices: 78656--78707 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
78646 CTGGTTCGAT
78656 CTTAGAATAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
78682 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGA-ATAGGAATGAACTCCGTATG
78708 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:78810 original size:196 final size:194
Alignment explanation
Indices: 78262--78816 Score: 716
Period size: 196 Copynumber: 2.8 Consensus size: 194
78252 GTGGCTCAAA
* * * * *
78262 ATCTTAGACTGGGAATTAACTCCGTATGCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
* *
78327 CCACGAAACGAGCGTACAGACGCTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGAGGATAGGC
66 CCACGAAACGAGCGTACAGGCACTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCG-GGATAGGC
* * * *
78392 CTGATCCCCCCTGCATGCTGTCGATCCTGTTGCTGGTCATGCTACCGTAACCCTTGATCTAGTTC
130 CTG-GCCCCCCTGCATGCTGTCAATCCTGCTGCTGGTCATGCTACCGTAACCCTCGATCTAGTTC
78457 C
194 C
*
78458 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATCGAATGAACTCCGTATGACTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
* * ** * * * * *
78523 CCACGAAACGAGTGTACGGGCACTCAACCGGTCGGAGAGGTAGAATGCGCAAGCTGGGGATAGTC
66 CCACGAAACGAGCGTACAGGCACTCAGTCGATCGAAGAGGCAGAATGCGCAAGC-CGGGATAGGC
* ** * * * * * *
78588 CCGGTCCATCCTGCATGCTATCAATCCTACTGCTGGTCATGCTACTGTAACTCTCGGTCTGGTTC
130 CTGG-CCCCCCTGCATGCTGTCAATCCTGCTGCTGGTCATGCTACCGTAACCCTCGATCTAGTTC
*
78653 G
194 C
*
78654 ATCTTAGAATAGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
* * * *
78719 CCATGAAACGAGCGTACAGGCATTCAGTCGATCGAAGAGGCAGAATGTGCAAGCCAGGGATCGGC
66 CCACGAAACGAGCGTACAGGCACTCAGTCGATCGAAGAGGCAGAATGCGCAAGCC-GGGATAGGC
78784 CTGGCCCCCCT-CATGTGCTGTCAATCCTGCTGC
130 CTGGCCCCCCTGCA--TGCTGTCAATCCTGCTGC
78817 CACAACCCTC
Statistics
Matches: 303, Mismatches: 51, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
194 2 0.01
195 5 0.02
196 295 0.97
197 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.23
Consensus pattern (194 bp):
ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCCGTATGACTAAGCCAAC
CCACGAAACGAGCGTACAGGCACTCAGTCGATCGAAGAGGCAGAATGCGCAAGCCGGGATAGGCC
TGGCCCCCCTGCATGCTGTCAATCCTGCTGCTGGTCATGCTACCGTAACCCTCGATCTAGTTCC
Found at i:79187 original size:26 final size:26
Alignment explanation
Indices: 79158--79210 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
79148 CCAGTCTGAT
79158 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
79184 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
79210 C
1 C
79211 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:80304 original size:26 final size:26
Alignment explanation
Indices: 80275--80326 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
80265 CTGGTTCCAT
80275 CTTAGA-ATAGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCTGTATG
80301 CTTAGACATGGAATGAACTCTGTATG
1 CTTAGACATGGAATGAACTCTGTATG
80327 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.33, C:0.13, G:0.23, T:0.31
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCTGTATG
Found at i:80429 original size:196 final size:196
Alignment explanation
Indices: 79881--80435 Score: 720
Period size: 196 Copynumber: 2.8 Consensus size: 196
79871 GTGGCTCAAA
* * * * *
79881 ATCTTAGACTGGGAATTAACTCCGTATGCTTAGACATGGAATTAACTTTGTATGCCTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAAC
* *
79946 CCATGAAACGAGCGTATAGACGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGGC
66 CCATGAAACGAGCGTACAGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGGC
* **
80011 CCGATCCCCCCTGCATGCTGTCGATCCTGTTGCTGGTCATGCTACCGTAACCCTCGATCTAGTTC
131 CCGATCCCCCCTGCATGCTGTCAATCCTACTGCTGGTCATGCTACCGTAACCCTCGATCTAGTTC
80076 C
196 C
* ** *
80077 ATCTTAGAATGGGAATGAACCCCGTATGCTTAGACATCAAATGAACTCCGTATGACTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAAC
* * * * * *
80142 CCACGAAACGAGTGTACGGGCGCTCAACCGGTC-AGAGAGGTAGAATGCGCAAGCTGGGGATAGG
66 CCATGAAACGAGCGTACAGGCGCTCAGCCGGTCGA-AGAGGCAGAATGCGCAAGCCGGGGATAGG
** * * * * *
80206 CCCGATCCATCCTGCATGCTATCAATCCTACTGCTGGTCATGCTACTGTAACTCTCGGTCTGGTT
130 CCCGATCCCCCCTGCATGCTGTCAATCCTACTGCTGGTCATGCTACCGTAACCCTCGATCTAGTT
80271 CC
195 CC
* *
80273 ATCTTAGAATAGGAATGAACTCTGTATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAAC
1 ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAAC
** * * * * *
80338 CCATGAAACGAGCGTACAGGCATTCAGTCGATCGAAGAGGCAGAATGTGCAAGCCAGGGATCGGC
66 CCATGAAACGAGCGTACAGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGGC
* *
80403 CTG-GCCCCCCT-CATATGCTGTCAATCCTACTGC
131 CCGATCCCCCCTGC--ATGCTGTCAATCCTACTGC
80436 CACAACCCTC
Statistics
Matches: 304, Mismatches: 51, Indels: 8
0.84 0.14 0.02
Matches are distributed among these distances:
194 1 0.00
195 6 0.02
196 296 0.97
197 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.24, T:0.23
Consensus pattern (196 bp):
ATCTTAGAATGGGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGACTAAGCCAAC
CCATGAAACGAGCGTACAGGCGCTCAGCCGGTCGAAGAGGCAGAATGCGCAAGCCGGGGATAGGC
CCGATCCCCCCTGCATGCTGTCAATCCTACTGCTGGTCATGCTACCGTAACCCTCGATCTAGTTC
C
Found at i:80803 original size:26 final size:26
Alignment explanation
Indices: 80774--80826 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
80764 CCAGTCTGAT
80774 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
80800 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
80826 C
1 C
80827 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:81536 original size:26 final size:26
Alignment explanation
Indices: 81499--81550 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
81489 GGCTTAAAAT
*
81499 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
81525 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
81551 ACTAAGCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:81819 original size:159 final size:157
Alignment explanation
Indices: 81525--82027 Score: 496
Period size: 159 Copynumber: 3.2 Consensus size: 157
81515 ACTCCGTATG
* *
81525 CTTAGACATGGAATGAACTCCGTATGACTAAGCCAACCCACGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * *
81590 CGGCAGGAGAGGCAGAATGTGCAAGCCAGGGATCAGCCCAGGCCCCCCCCGCGTGCTGTCAATCC
65 CGACCGGAGAGGCAGAATGCGCAAGCCGGGGATC-GACCAGGTCCCCCCTGCGTGCTGTCGATCC
81655 TGCTGCCACAACCCTCGGTTCGGTCTGAT
129 TGCTGCCACAACCCTCGGTTCGGTCTGAT
* * * *
81684 CTTAGAC-TGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATACGGGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAG-CAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * *
81748 CCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGACCTGGTCCCCCTCTACGTGTTGCCGATC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCC-CTGCGTGCTGTCGATC
* * * **
81813 CCGCTGCCACAATCCTCAG-TCTGG-CTGGGG
128 CTGCTGCCACAACCCTCGGTTC-GGTCT-GAT
* * * * ** *
81843 CTTAGACATAGAATGAACTCCCTATGCCTAAGCAAAACCATGAAACG-GACGTGTGGGCACTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGC-AACCCACGAAACGAG-CGTACGGGCGCTCAG
* * *
81907 CCGATCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCA-GTCCCCCCTGCATGCTGTTGATC
64 CCGACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGA-CCAGGTCCCCCCTGCGTGCTGTCGATC
* ** * **
81971 CTGCTACCGTAACCCTCGGTCCTATCTGAT
128 CTGCTGCCACAACCCTCGGTTCGGTCTGAT
*
82001 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
82028 ATAGACTGGG
Statistics
Matches: 276, Mismatches: 57, Indels: 23
0.78 0.16 0.06
Matches are distributed among these distances:
157 1 0.00
158 65 0.24
159 207 0.75
160 3 0.01
ACGTcount: A:0.24, C:0.31, G:0.26, T:0.18
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
GACCGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCAGGTCCCCCCTGCGTGCTGTCGATCCTG
CTGCCACAACCCTCGGTTCGGTCTGAT
Found at i:82042 original size:26 final size:26
Alignment explanation
Indices: 82003--82053 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
81993 TATCTGATCT
82003 TAGACTGGGAATGAACTCCATATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
82029 TAGACTGGGGATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
82054 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:82653 original size:11 final size:11
Alignment explanation
Indices: 82639--82671 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
82629 TCCAGCGATA
*
82639 CTCCGGAGATG
1 CTCCGGTGATG
82650 CTCCGGTGATG
1 CTCCGGTGATG
82661 CTCCGGTGATG
1 CTCCGGTGATG
82672 GTGCGCTGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.27, G:0.36, T:0.24
Consensus pattern (11 bp):
CTCCGGTGATG
Found at i:82653 original size:22 final size:22
Alignment explanation
Indices: 82628--82671 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
82618 CGATTAGGCT
82628 CTCCAGCGATACTCCGGAGATG
1 CTCCAGCGATACTCCGGAGATG
* * * *
82650 CTCCGGTGATGCTCCGGTGATG
1 CTCCAGCGATACTCCGGAGATG
82672 GTGCGCTGGG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (22 bp):
CTCCAGCGATACTCCGGAGATG
Found at i:83847 original size:159 final size:156
Alignment explanation
Indices: 83420--83868 Score: 411
Period size: 159 Copynumber: 2.8 Consensus size: 156
83410 ACCATTGTCA
* *
83420 GTCCTGCTGCCACAACCCTCGGTCCGGCTGGGGCATAGACATGGAATGAACTCCGTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTTCGGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
** * * * * * **
83485 CCAACCCACAAAACAAGCTTACGGGTGCTCAGCCGGTCGGAGAGGCAAAATGCGCAAGTCATGGA
65 CCAACCCATGAAACGAGCGTACGGGTGCTAAGCCGG-CCGAGAGGCAAAATGCGCAAGCCGGGGA
* * ** *
83550 TCGGTCCGGTCCCCCCTGTGTGCAGTCG
129 TCGGCCCAGTCCCCCCTGCATGCAGCCG
* * * * * **
83578 ATCCTGCTGCCA-ATCTCTCAG-TCTGATCTGATCTTAGAC-TAGGAATGAACTCCGTATGCCTA
1 GTCCTGCTGCCACAACCCTCGGTTC-G-GCTGGGCTTAGACAT-GGAATGAACTCCGTATGCCTA
** * * * ** * * *
83640 AGTTAACCCGTGAAACGAGCGTGCAGGCACTGAGCTGGCCGAAGAGGCATAATGCGCAAGCCGGG
63 AGCCAACCCATGAAACGAGCGTACGGGTGCTAAGCCGGCCG-AGAGGCAAAATGCGCAAGCCGGG
* * * *
83705 GATTGGCCCTATTCCCCTCTGCATGCTGCCG
127 GATCGGCCC-AGTCCCCCCTGCATGCAGCCG
*
83736 GTCCTGCTGCCACAACCCTCGGTTCGGCTAGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 GTCCTGCTGCCACAACCCTCGGTTCGGCT-GGGCTTAGACATGGAATGAACTCCGTATGCCTAAG
* **
83801 CCAACCCATGAAACG-GACGTACGGGTGCTAAGCCGACCAGAGAGGCAGGATGCGCAAGCCGGGG
65 CCAACCCATGAAACGAG-CGTACGGGTGCTAAGCCGGCC-GAGAGGCAAAATGCGCAAGCCGGGG
83865 ATCG
128 ATCG
83869 AACGGGTGGT
Statistics
Matches: 223, Mismatches: 57, Indels: 21
0.74 0.19 0.07
Matches are distributed among these distances:
156 4 0.02
157 86 0.39
158 41 0.18
159 88 0.39
160 4 0.02
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (156 bp):
GTCCTGCTGCCACAACCCTCGGTTCGGCTGGGCTTAGACATGGAATGAACTCCGTATGCCTAAGC
CAACCCATGAAACGAGCGTACGGGTGCTAAGCCGGCCGAGAGGCAAAATGCGCAAGCCGGGGATC
GGCCCAGTCCCCCCTGCATGCAGCCG
Found at i:85375 original size:26 final size:26
Alignment explanation
Indices: 85324--85376 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
85314 CCGGTCCAAT
* *
85324 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
85350 CTTAGACTGGGTATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
85376 C
1 C
85377 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:86428 original size:159 final size:159
Alignment explanation
Indices: 86251--86625 Score: 441
Period size: 159 Copynumber: 2.4 Consensus size: 159
86241 AGCCTGTCGA
* * * * *
86251 AGAGGCATAATGCGTAAGCCGGGGA-CTGGCTCGGTCCCCTTCTACGTGCTATCGATCCCGCTGC
1 AGAGGCATAATGCATAAGCCGGGGATC-AGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGC
* * *
86315 CACAACACTCGGTCCGATTAGGGCTTAGACATGGAATGAACTCCCTATGACTAAGCCAGCCCACG
65 CACAACACTCGGTCCGACTAGGGCTTAGACATGGAATCAACTCCCTATGACTAAGCCAACCCACG
* ** **
86380 ATACGGGCGTGCGAGCACTCAGTTGGTCAG
130 AAACGGGCGTGCGAGCACTCAGCCGACCAG
* * * *
86410 AGAGGCATAATGCATAAGCCGAGGATCAGCCCGGTCCCCCTCTACGTGCTGCCGGTCCCGTTGCC
1 AGAGGCATAATGCATAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCC
* * * **
86475 ACAACACTCGGTCTGACTAGGGCTTAGAGATGGAATCAACTCCCTATGCCTAAGCCAACCCGGGA
66 ACAACACTCGGTCCGACTAGGGCTTAGACATGGAATCAACTCCCTATGACTAAGCCAACCCACGA
* * *
86540 AATGGGCGTGCGAGCGCTCAGCCGACCGG
131 AACGGGCGTGCGAGCACTCAGCCGACCAG
* * * * *
86569 AGAGGCAGAATGCACAAGCCGGGGATTAG-CCGAGTCCTCC-CTGCGTGCTACCGATCC
1 AGAGGCATAATGCATAAGCCGGGGATCAGCCCG-GTCCCCCTCTACGTGCTACCGATCC
86626 TACTACCGTA
Statistics
Matches: 181, Mismatches: 33, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
158 17 0.09
159 163 0.90
160 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
AGAGGCATAATGCATAAGCCGGGGATCAGCCCGGTCCCCCTCTACGTGCTACCGATCCCGCTGCC
ACAACACTCGGTCCGACTAGGGCTTAGACATGGAATCAACTCCCTATGACTAAGCCAACCCACGA
AACGGGCGTGCGAGCACTCAGCCGACCAG
Found at i:87391 original size:26 final size:26
Alignment explanation
Indices: 87353--87405 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
87343 TGCTCAAAAT
87353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
87379 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
87405 C
1 C
87406 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:87591 original size:158 final size:154
Alignment explanation
Indices: 87379--87880 Score: 481
Period size: 158 Copynumber: 3.2 Consensus size: 154
87369 ACTCCGTATG
* *
87379 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGAGCGCTCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * *
87444 CGATCAGAGAGGCAAAATGCGCAAGCTAGGGATTGGCTCGGTGCCCCCTGCGTGCTGTCGATCTT
66 CGATC-GAGAGGCAAAATGCGCAAGCTGGGGATCGGCACGGT-CCCCCTGCGTGCTATCGATCCT
*
87509 GCTGCCGCAACCCTCAGTCCGGTCTGAT
129 GTTGCCGCAACCCTC-GTCC-GTCTGAT
* * * * *
87537 CTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGCGTGCGGGTGCTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
87601 TCGATCGAAGAGGCATAATGCACAAG-TCGGGGATCGAG-ACGGTCCACCTCTGCGTGCTACCGA
65 TCGATCG-AGAGGCAAAATGCGCAAGCT-GGGGATCG-GCACGGTCC-CC-CTGCGTGCTATCGA
** * **
87664 TCCTGTTGCCATAACCCTCGGTCCGACTGGGG
125 TCCTGTTGCCGCAACCCTC-GTCCGTCT-GAT
* * * * *
87696 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGGTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
* * * * * * *
87761 CGACTGGAGAGGCAGAATACGCAAGCCGGGGATCGTCCCGGTCCCCCCTGCATGCTATCGATCCT
66 CGA-TCGAGAGGCAAAATGCGCAAGCTGGGGATCGGCACGGT-CCCCCTGCGTGCTATCGATCCT
* * **
87826 ATTGCCGCAACCCTCGATTCTGTCCAAT
129 GTTGCCGCAACCCTCG--TCCGTCTGAT
*
87854 CTTAGAC-TGGGAATGAACTCTGTATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
87881 TTAGACTGGG
Statistics
Matches: 277, Mismatches: 52, Indels: 30
0.77 0.14 0.08
Matches are distributed among these distances:
157 7 0.03
158 143 0.52
159 122 0.44
160 5 0.02
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (154 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
CGATCGAGAGGCAAAATGCGCAAGCTGGGGATCGGCACGGTCCCCCTGCGTGCTATCGATCCTGT
TGCCGCAACCCTCGTCCGTCTGAT
Found at i:87884 original size:26 final size:26
Alignment explanation
Indices: 87854--87906 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
87844 TCTGTCCAAT
*
87854 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
87880 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
87906 C
1 C
87907 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:88959 original size:159 final size:159
Alignment explanation
Indices: 88586--89023 Score: 474
Period size: 159 Copynumber: 2.8 Consensus size: 159
88576 CTTCATATGT
* * *
88586 TTAGACATCGAATGAACTCCGTATGCCTAAGCCAACCCACA-AAACGAGCGTAAGGGCGCTCAAC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCA-AGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
88650 CGGTCGGAGAGGTAGAATGCGTAAGCCGGGGATCGGCCTGGTCCCCC-CTACGTGCTGTCGATCC
65 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTGCCGATCC
* ** * *
88714 TGCTAATGCAACCCTCGATCCGATCTGATC
130 CGCTAACACAACCCTCGATCCGAGCTGAGC
* * * *
88744 TTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCATGAAACGAGCGTACGGGCGCTGAGC
1 TTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAGC
* * *
88808 TGGTCGAAGAGGCATAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTGCC-AGTC
65 CGGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTGCCGA-TC
* * *
88872 CCGCTACCACAACCCTCGATTCG-GCTGGGGC
129 CCGCTAACACAACCCTCGATCCGAGCT-GAGC
* * * * **
88903 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCAAGAAATGGGCGTGCGGGCAATCAGCC
1 TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAGCC
* * ** *
88968 GATCGGAGAGGCAGAATGCACAAGTCGACGATTGACCCGGT-CCCCTCTACATGCTG
66 GGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTG
89024 TCATAACCCT
Statistics
Matches: 231, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
157 1 0.00
158 111 0.48
159 118 0.51
160 1 0.00
ACGTcount: A:0.25, C:0.30, G:0.27, T:0.18
Consensus pattern (159 bp):
TTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCAAGAAACGAGCGTACGGGCGCTCAGCC
GGTCGGAGAGGCAGAATGCGCAAGTCGGGGATCGACCCGGTCCCCCTCTACATGCTGCCGATCCC
GCTAACACAACCCTCGATCCGAGCTGAGC
Found at i:89089 original size:26 final size:26
Alignment explanation
Indices: 89048--89100 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
89038 CTGGTCCAAT
89048 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
89074 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
89100 C
1 C
89101 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:89944 original size:26 final size:26
Alignment explanation
Indices: 89915--89967 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
89905 TCAGTCCGAT
89915 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
89941 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
89967 C
1 C
89968 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:90501 original size:670 final size:675
Alignment explanation
Indices: 89440--90846 Score: 1614
Period size: 670 Copynumber: 2.1 Consensus size: 675
89430 AACTCCGTAT
* * * * *
89440 GCTTAAACATGGAATGAACTCTGGATGCATAAGCCAACCCACGAAACGAGCGTGCGGGCACTCAA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAA
* * * * ** * *
89505 CCAGTCGGAGAGGCAGAATGTGCAAGTCGGGGATCGGCCTGGTCCCCCTACGTGCTATCAATCTT
66 CCAGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCTAATCCCCCTACGTGCTACCAATCCT
** *
89570 ACTGTCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTGAAC
131 ACTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAAAGAACTCCGTATGCATAAGTGAAC
* * * * * ** * *
89635 CCACGAAACGAGTGTGCGGGTGCTGACCTGGCAGGAGAGGCAAAATGCGTAAGCTAGGGATCAGC
196 CCACGAAACAAGCGTACAGGCGCTGACCTGGCAAAAGAGGCAAAATGCGCAAGCGAGGGATCAGC
* * * * *
89700 TCGGTCCCTCTCTGCGTGCTGTCGGTCTCGCTGCCACAACCCTTGGTCCGACTAGGGCTTAGACA
261 CCAGTCCCCCTCTGCGTGCTGCCGGTCACGCTGCCACAACCCTTGGTCCGACTAGGGCTTAGACA
* * * *
89765 TGGAATGAACTCCCTATGCCTAAGCAAACCAACGAACCGGGCATGTGGGCGCTAAGCCGATCGGA
326 TGGAATGAACTCCCTATGCCTAAGCAAACCAACAAAACAGGCATGCGGGCGCTAAGCCGATCGGA
** * ** *
89830 GAGGCAAAATGCGCTCGCC-AGGGATCGACTCGATTCCCCCTACG-TGCTGCCGATCCTGCTGTC
391 GAGGCAAAATGCGCAAGCCGA-GGATCGACTCG-GT-CCCCTACGATGCTAACGATCCTGCT-AC
* *
89893 GT-AACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGGATGA
452 CTCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGA
* *
89957 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTGCTTAG-C-C-A-G-TCGGAGAG
517 ACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTTAGTCACAAGGATCGGAGAG
* * **
90017 GCATAATGCTCAAG-CTGGGGATCAGTACAG-TCCCCCTCTGCATG-ATGCTGATCCCACTGCC-
582 GCATAATGCGCAAGTC-GGGGATCAG-ACAGATCCCCCTCTACATGCA-GCCAATCCCACTGCCG
*
90078 AGTCCTGCTGCCACAACCCTCAGTCTGGCTGGG
644 A-TCCTGCTGCCAAAACCCTCAGTCTGGCTGGG
* * *
90111 GCTTAGACATGGAATGAACTCCGTATGCCT-AGCCAACCCACGAAACGAGCGTACGAGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAA
** * *
90175 CTGGTCGGAGAGGAAGAATGCGTC-AGCCGGGGATCGA-CTCAATCCCCCTGCGTGCTACCGATC
66 CCAGTCGGAGAGGAAGAATGCG-CAAGCCGGGGATCGACCT-AATCCCCCTACGTGCTACCAATC
** * * * *
90238 CTACTACCGCAACCCTCAGT-TCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGTATAAGTT
129 CTACTACCGCAACCCTCAGTCT-GGTCCAATCTTAGACTGGGAAAGAACTCCGTATGCATAAGTG
* *
90302 AACCCACGAAACAAGCGTACAGGCGTTGATCC-GGCAAAAGAGGCATAATGCGCAAGCCGA-GGA
193 AACCCACGAAACAAGCGTACAGGCGCTGA-CCTGGCAAAAGAGGCAAAATGCGCAAG-CGAGGGA
** * *
90365 TTGGCCCAGTCCCCCTCTGCGTGTTGCCTGTCACGCTGCCACAACCCTCT-GTCC-AGCTAGGGC
256 TCAGCCCAGTCCCCCTCTGCGTGCTGCCGGTCACGCTGCCACAACCCT-TGGTCCGA-CTAGGGC
* * * * * *
90428 TTAGACATGGAATGAACTCCCTATGCCTAAGCCAGCCCACAAAACAGGCGTGCGGGTGCTTAGCC
319 TTAGACATGGAATGAACTCCCTATGCCTAAGCAAACCAACAAAACAGGCATGCGGGCGCTAAGCC
* * * *
90493 GGTCGGAGAGGCAGAATGCGCAAGCCGAGGATCGGCTCGGTCCCCTCCGCATGCTAACGATCCTG
384 GATCGGAGAGGCAAAATGCGCAAGCCGAGGATCGACTCGGTCCCCTACG-ATGCTAACGATCCTG
* ** *
90558 CTACCTCAACCCTCGTTTTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
448 CTACCTCAACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGG
*
90623 ATGAACTCCGTATGCCTAAGTCAACCCATGAGACGAGCGTACGGGCGCTTAGTCGATCGGAAAGG
513 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTTAGTC-A-C---AA-G
* * ** *
90688 TCGATCGGAGAGGCATAATGCGCAAGTCGGGGATCAGCCCGATCCTTCTCTACGTGCAGCCAATC
572 --GATCGGAGAGGCATAATGCGCAAGTCGGGGATCAGACAGATCCCCCTCTACATGCAGCCAATC
* * *
90753 CCGCTGCCGATCTTGCTGCCAAAACCCTCGGTCTGGCTGGG
635 CCACTGCCGATCCTGCTGCCAAAACCCTCAGTCTGGCTGGG
* *
90794 GCTTAGACATGTAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGA-CGTA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTA
90847 GGGCTCAACT
Statistics
Matches: 613, Mismatches: 94, Indels: 46
0.81 0.12 0.06
Matches are distributed among these distances:
668 7 0.01
669 7 0.01
670 428 0.70
671 34 0.06
674 1 0.00
678 1 0.00
682 3 0.00
683 112 0.18
684 20 0.03
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (675 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGTACGAGCACTCAA
CCAGTCGGAGAGGAAGAATGCGCAAGCCGGGGATCGACCTAATCCCCCTACGTGCTACCAATCCT
ACTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAAAGAACTCCGTATGCATAAGTGAAC
CCACGAAACAAGCGTACAGGCGCTGACCTGGCAAAAGAGGCAAAATGCGCAAGCGAGGGATCAGC
CCAGTCCCCCTCTGCGTGCTGCCGGTCACGCTGCCACAACCCTTGGTCCGACTAGGGCTTAGACA
TGGAATGAACTCCCTATGCCTAAGCAAACCAACAAAACAGGCATGCGGGCGCTAAGCCGATCGGA
GAGGCAAAATGCGCAAGCCGAGGATCGACTCGGTCCCCTACGATGCTAACGATCCTGCTACCTCA
ACCCTCGGTTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTTAGTCACAAGGATCGGAGAGGCAT
AATGCGCAAGTCGGGGATCAGACAGATCCCCCTCTACATGCAGCCAATCCCACTGCCGATCCTGC
TGCCAAAACCCTCAGTCTGGCTGGG
Found at i:90621 original size:26 final size:26
Alignment explanation
Indices: 90585--90637 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
90575 TTGGTCTGAT
90585 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
90611 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
90637 C
1 C
90638 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:91926 original size:26 final size:26
Alignment explanation
Indices: 91897--91975 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
91887 CCGGTCCGAT
**
91897 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
91923 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
*
91949 CTTAGACAAGGAATAAACTCCGTATG
1 CTTAGACAAGGAATGAACTCCGTATG
91975 C
1 C
91976 CTAAACCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.23
Consensus pattern (26 bp):
CTTAGACAAGGAATGAACTCCGTATG
Found at i:92458 original size:26 final size:26
Alignment explanation
Indices: 92422--92471 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
92412 TTGGTCCAAT
92422 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
* *
92448 CTTAGATTGGGGATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
92472 GGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:93168 original size:26 final size:26
Alignment explanation
Indices: 93139--93191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
93129 TCCGGTTGAT
93139 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
93165 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
93191 C
1 C
93192 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:94225 original size:548 final size:540
Alignment explanation
Indices: 93165--94751 Score: 1874
Period size: 548 Copynumber: 2.9 Consensus size: 540
93155 ACTCCGTATG
* * * * * *
93165 CTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGT
* * * *
93230 CGGTCGAAAGGCCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCAACACGGTCCCACTGTCGA
66 CGATCGAGAGGCCGATC-GAGAGGCATAATGCGCAAGCCGGGGATCAACA-AGTCCCA---TCGA
*
93295 TCCTGCTGCCACAACCCTCGATCCTGTTGCTGGTCCTGCTGCCACAACTCTCGGTCTGGCTTGGG
126 TCCTGCTGCCACAACCCTCGATCC-GTTGCTGGT-CTACTGCCACAACTCTCGGTCTGGCTTGGG
* *
93360 CTTAGACATGGAATGAACCAGTGTGCCTAAGCCAATCCATGGAACGAGCGTGCGGGTGTTCAACC
189 CTTAGACATGGAATGAACCAGTGTGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGTGCTCAACC
* * * *
93425 GGTCGAAGAAGTAGAATTCGTAAGCTGGGGATCAGCCCGAT-CCCCCTATATGCTGTCGATCTTG
253 GGTCGAAGAAGCAGAATCCGCAAGCTGGGGATCAGCCCGATCCCCCCTATATGCTGTCGATCTTA
* * * * *
93489 TTGTTGGTCC-AGCTGCTGCAACCCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTTCATAT
318 CTGCTGGTCCTA-CTGCAGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
93553 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGGCACTCAG
382 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* * * * *
93618 CCGACTGGAGAGGCAGAATGCGCAAGCCGGGGATCGACCCAATCCCCCTTGCATGCTCTTGATCC
447 CCGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTCTTGATCC
*
93683 TACTACCATAACCCTCAATCTAGTTCCGAT
512 TACTACCATAACCCTCAAT-TAGGTCCGAT
* * *
93713 CTTAGATTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATAAGCGTGCGGGTGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGT
* * *
93778 CGATCGGAGAGGCC-AGTCAAGAGGCATAATGCGTAAGTCGGGGATCAACAAGATCCCATTACCG
66 CGATC-GAGAGGCCGA-TCGAGAGGCATAATGCGCAAGCCGGGGATCAACAAG-TCCCA-T--CG
* * *
93842 GTCCTGCTGCCACAACCCTCGATCCGTTGCTGGTCTTACTGCCACAACTCTCGATTTGGCTTGGG
125 ATCCTGCTGCCACAACCCTCGATCCGTTGCTGGTC-TACTGCCACAACTCTCGGTCTGGCTTGGG
* *
93907 CTTAGACATGGAATGAACCAGTGTGCCTAAGCCAACACATGAAACGAGCATACGGGTGCTCAACC
189 CTTAGACATGGAATGAACCAGTGTGCCTAAGCCAAC-CATGAAACGAGCGTGCGGGTGCTCAACC
* * * *
93972 GGCCGAAGAAGCAGAATCCGCAAGCTGGGGATCAGCCTGGTCCCCCCTATATGCTATCGATCTTA
253 GGTCGAAGAAGCAGAATCCGCAAGCTGGGGATCAGCCCGATCCCCCCTATATGCTGTCGATCTTA
*
94037 CTGCTGGTCCTACTGCAGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATG
318 CTGCTGGTCCTACTGCAGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATG
*
94102 CTTAGACATGGAATAAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
383 CTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * *
94167 CAACCGGAGAGACAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCCTGCGTGCTCTTGATCCT
448 CGACCGGAGAGACAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTCTTGATCCT
*
94232 ACTACCATAACCCTCAATTTGGTCCGAT
513 ACTACCATAACCCTCAATTAGGTCCGAT
94260 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGT
* * * ** * **
94325 CGACCAGAGAGGCCGGTTGGAGAGGCATAATGCGCAAGCCAAGGATCAACCCAGTCCC-TCTTTG
66 CGATC-GAGAGGCC-GATCGAGAGGCATAATGCGCAAGCCGGGGATCAA-CAAGTCCCATCGAT-
* * * * * * * * * * *
94389 CGTGCTGTC-GATCCCACTA-CCGGTACT-G-CTA---CCATAACCCTCGGTCTGGC-TGGGTTT
127 CCTGCTGCCACAACCCTCGATCCGTTGCTGGTCTACTGCCACAACTCTCGGTCTGGCTTGGGCTT
* * ** ** * * **
94446 AGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGTAGGCGCTCAGCCAA
192 AGACATGGAATGAAC-CAGTGTGCCTAAGCCAA-CCATGAAACGAGCGTGCGGGTGCTCAACCGG
* ** * * * * **
94511 TCGAAGAGGCAGAATGTGCAAGCCGGGGTTC-GACCCGATCCCCTCT-TGTGCGCTGTCGATCCA
255 TCGAAGAAGCAGAATCCGCAAGCTGGGGATCAG-CCCGATCCCCCCTATAT--GCTGTCGATCTT
* * * *
94574 ACTGCTGGTCCT-CTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
317 ACTGCTGGTCCTACTGCAGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATAT
* * *
94638 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCATAAAACGAGCGTGCAGGCGCTCAG
382 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAG
* ** * ** *
94703 TCGGTCGGAGA-AGCAAAATGCATAAGTCGAGGATCGACCCGATCCCCCC
447 CCGACCGGAGAGA-CAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCC
94752 AACGTGCTAT
Statistics
Matches: 896, Mismatches: 124, Indels: 49
0.84 0.12 0.05
Matches are distributed among these distances:
536 25 0.03
537 231 0.26
538 22 0.02
540 2 0.00
541 1 0.00
542 1 0.00
543 6 0.01
544 8 0.01
545 7 0.01
546 4 0.00
547 212 0.24
548 365 0.41
549 12 0.01
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.21
Consensus pattern (540 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGTGCTTAGT
CGATCGAGAGGCCGATCGAGAGGCATAATGCGCAAGCCGGGGATCAACAAGTCCCATCGATCCTG
CTGCCACAACCCTCGATCCGTTGCTGGTCTACTGCCACAACTCTCGGTCTGGCTTGGGCTTAGAC
ATGGAATGAACCAGTGTGCCTAAGCCAACCATGAAACGAGCGTGCGGGTGCTCAACCGGTCGAAG
AAGCAGAATCCGCAAGCTGGGGATCAGCCCGATCCCCCCTATATGCTGTCGATCTTACTGCTGGT
CCTACTGCAGCAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACA
TGGAATGAACTCTGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCGGA
GAGACAGAATGCGCAAGCCGAGGATCGACCCGATCCCCCCTGCATGCTCTTGATCCTACTACCAT
AACCCTCAATTAGGTCCGAT
Found at i:94642 original size:26 final size:26
Alignment explanation
Indices: 94613--94665 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
94603 CCAGTCCGAT
*
94613 CTTAGAC-TGGGAATGAACTCCGTATG
1 CTTAGACAT-GGAATGAACACCGTATG
*
94639 CTTAGACATGGAATGAACACTGTATG
1 CTTAGACATGGAATGAACACCGTATG
94665 C
1 C
94666 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACATGGAATGAACACCGTATG
Found at i:94974 original size:159 final size:157
Alignment explanation
Indices: 94638--95102 Score: 372
Period size: 158 Copynumber: 2.9 Consensus size: 157
94628 AACTCCGTAT
* * ** *
94638 GCTTAGACATGGAATGAACACTGTATGCCTAAGCCAACCCATAAAAC-GAGCGTGCAG-GCGCTC
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACAGA-CGTGC-GCGAGCTC
* ** * * ** * * ** *
94701 AGTCGGTCGGAGAA-GCAAAATGCATAAGTCGAGGATCGACCCGATCCCCCCAACGTGCTATCGA
64 A-ACCATC-GAAAAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCCCCTGCGTGCTGTCGA
**** * ** *
94765 TCCTGCTGTTGCAACCCTCGG-TCCAGCCCGA
127 TCCTGCTACCACAACCCTCGGTTCGA-CTGGG
* * * * *
94796 TCTTAGGC-TGGGAATGAACT-TCGTATGCCTAAGTCAATCCACGAAAC-GA-GTGTGCGAGCCC
1 GCTTAGACAT-GGAATGAACTCTC-TATGCCTAAGCCAACCCACGAAACAGACGTGCGCGAG--C
* * * *
94857 TGAGCCAGTCGAAAAGGCATAATGCGCAAGCCGGGGATCGACTCAG-TCCCCCTCTGCGTGCTGT
62 TCAACCA-TCGAAAAGGCAGAATGCGCAAGCCGAGGATCGAC-CAGATCCCCC-CTGCGTGCTGT
* * *
94921 CGGTCCTGTTGCCACAACCCTCGGTTCGACTGGG
124 CGATCCTGCTACCACAACCCTCGGTTCGACTGGG
* *
94955 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCATGAAACAGACGTGCGGGAGCTCAA
1 GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACAGACGTGCGCGAGCTCAA
* * * *
95020 CCATCGAAAAGGCAGAATGTGCAAGTCGAGGATCGGCCCGATCCCCCCTGCGTGCTGTCGATCCT
66 CCATCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCCCCTGCGTGCTGTCGATCCT
95085 GCTACCACAACCCTCGGT
131 GCTACCACAACCCTCGGT
95103 CTAGTCTGAT
Statistics
Matches: 241, Mismatches: 51, Indels: 31
0.75 0.16 0.10
Matches are distributed among these distances:
155 1 0.00
156 5 0.02
157 42 0.17
158 104 0.43
159 74 0.31
160 8 0.03
161 7 0.03
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GCTTAGACATGGAATGAACTCTCTATGCCTAAGCCAACCCACGAAACAGACGTGCGCGAGCTCAA
CCATCGAAAAGGCAGAATGCGCAAGCCGAGGATCGACCAGATCCCCCCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCGGTTCGACTGGG
Found at i:96178 original size:159 final size:158
Alignment explanation
Indices: 95993--96280 Score: 368
Period size: 159 Copynumber: 1.8 Consensus size: 158
95983 TCGGTCCTAT
* * *
95993 CTTAGACTAGGAATGAACTCCGTATG-CATAAGTCAACCCACCAAATGAGCGTGCGAGCGTT-GA
1 CTTAGACTAGGAATGAACTCCCTATGCCA-AAGCCAACCCACCAAATGAGCGTGCGAGCGTTCAA
* * * *
96056 GTCAATCGAAGATGCATAATACACAAGCTGGGGATC-AGCCCGATCCTCCTATGCGTGCTGTCGA
65 CT-AATCGAAGAGGCAAAATACACAAGCTGGGGATCGA-CCCGATCC-CCCATGCGTGCTGTCGA
96120 TCCCGCTGCCACAACCCTCGGTTTGACTGGGG
127 TCCCGCTGCCACAACCCTCGGTTTGACTGGGG
** * * *
96152 CTTAGAC-ATGGAATGAACTCCCTATGCCAAAGCCAACCCATGAAATGGGTGTGCGGGCGTTCAA
1 CTTAGACTA-GGAATGAACTCCCTATGCCAAAGCCAACCCACCAAATGAGCGTGCGAGCGTTCAA
* * *
96216 CTGATCGAAGAGGCAAAATACGCAAGCTGGGGATCGACCCGATCCCCCCTGCGTGCTGTCGATCC
65 CTAATCGAAGAGGCAAAATACACAAGCTGGGGATCGACCCGATCCCCCATGCGTGCTGTCGATCC
96281 TGCTACCGTA
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
158 19 0.17
159 86 0.78
160 5 0.05
ACGTcount: A:0.26, C:0.28, G:0.26, T:0.20
Consensus pattern (158 bp):
CTTAGACTAGGAATGAACTCCCTATGCCAAAGCCAACCCACCAAATGAGCGTGCGAGCGTTCAAC
TAATCGAAGAGGCAAAATACACAAGCTGGGGATCGACCCGATCCCCCATGCGTGCTGTCGATCCC
GCTGCCACAACCCTCGGTTTGACTGGGG
Found at i:96342 original size:26 final size:27
Alignment explanation
Indices: 96313--96367 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
96303 ATCCGATGTT
*
96313 AGACTGGGAATGAACTCCGTATG-CTA
1 AGACTGGGAATGAACTCCATATGCCTA
*
96339 AGACTGGGGATGAACTCCATATGCCTA
1 AGACTGGGAATGAACTCCATATGCCTA
96366 AG
1 AG
96368 TCAATCGATG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 21 0.81
27 5 0.19
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (27 bp):
AGACTGGGAATGAACTCCATATGCCTA
Found at i:96729 original size:26 final size:26
Alignment explanation
Indices: 96691--96743 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
96681 CCGGTCCGAT
96691 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
96717 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
96743 C
1 C
96744 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:97179 original size:41 final size:41
Alignment explanation
Indices: 97122--97199 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
97112 AGAATGTGCA
* *
97122 AGCGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCCTCCC
1 AGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCTCCC
* *
97163 AGCGTGCTATCGATCCTGCTGCCGCAACCCTTGGTCC
1 AGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCC
97200 GATCTGATCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.13, C:0.40, G:0.23, T:0.24
Consensus pattern (41 bp):
AGCGTGCTATCGATCCTGCTACCGCAACCCTCGGTCCTCCC
Found at i:97237 original size:26 final size:26
Alignment explanation
Indices: 97208--97260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
97198 CCGATCTGAT
97208 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
97234 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
97260 C
1 C
97261 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:98282 original size:158 final size:158
Alignment explanation
Indices: 97975--98299 Score: 370
Period size: 158 Copynumber: 2.1 Consensus size: 158
97965 CTTAGACATT
* *
97975 GAATGAACTCCGTATGCCTAAGCCAACCCACGGAACGAGCATGCAGGCGCTCAGCTGACCGGAAA
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCTGACCGGAAA
* * * * * ** *
98040 GGCAAAATGCGCAAATCGGGGATCAACTCGGTCCCCTCTGCGTGCTGTCGATCTTGCTGTCATAA
66 GGCAAAATGCACAAACCGGGGATCAACCCGATCCCCTCTGCGTGCTGTCGATCCTGCTACCACAA
*
98105 CCCTCAGTCTGATTCGATCTTAGACTGG
131 CCCTCAGTCTGAGTCGATCTTAGACTGG
* * * * **
98133 GAATGAACTCC-TATGCATAAGTCAACCCACGAAACGAGCGTGCGGGCGCTGAGCTGGTC-GAAG
1 GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCTGACCGGAA-
* *** *
98196 AGGCATAAA-GCACAAGCCGGGGATTGGCCCGATCCCCCTCTGCGTGCTGTCGATCCTGCTACCG
65 AGGCA-AAATGCACAAACCGGGGATCAACCCGAT-CCCCTCTGCGTGCTGTCGATCCTGCTACCA
**
98260 CAACCCTTGGTCT-AGTCTGATCTTAGACTGG
128 CAACCCTCAGTCTGAGTC-GATCTTAGACTGG
98291 GAATGAACT
1 GAATGAACT
98300 ATGTATGCTT
Statistics
Matches: 139, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
156 3 0.02
157 64 0.46
158 72 0.52
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (158 bp):
GAATGAACTCCGTATGCATAAGCCAACCCACGAAACGAGCATGCAGGCGCTCAGCTGACCGGAAA
GGCAAAATGCACAAACCGGGGATCAACCCGATCCCCTCTGCGTGCTGTCGATCCTGCTACCACAA
CCCTCAGTCTGAGTCGATCTTAGACTGG
Found at i:98331 original size:26 final size:26
Alignment explanation
Indices: 98281--98333 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
98271 CTAGTCTGAT
*
98281 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
98307 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
98333 C
1 C
98334 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:98845 original size:158 final size:157
Alignment explanation
Indices: 98501--98936 Score: 570
Period size: 158 Copynumber: 2.8 Consensus size: 157
98491 GCTTAAAAAT
* * * ** *
98501 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCACTCAGCCAGTAGGAT
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * * *
98566 AGGTAAAATGCGCAAGCCGTGGATCGGCCCGAT-CCCCCTATGTGCTATCGATCCTGCTACTACT
66 AGGCAAAATGCGCAAG-TGTGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCTGCTACTACA
98630 ACTCTCAGTTCGGTCCAATCTTAGACTA
130 ACTCTCAGTTCGGTCCAATCTTAGACTA
* *
98658 GGAATGAACTCCGTATGTCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCGTAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* *
98723 AGGCAAAATGCGCAAGTAGTGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCTGCTGCTGCA
66 AGGCAAAATGCGCAAGT-GTGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCTGCTACTACA
98788 ACTCTCAGTTCGGTCCAATCTTAGACTA
130 ACTCTCAGTTCGGTCCAATCTTAGACTA
* * * ** *
98816 GGAATGAACTTCGTGTACCTAAGTTAACCCACAAAATGAGCGTGCGGGCGCTCAGTCGGCCGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
* * * * *
98881 AGGCATAATACGCAAGCCTG-GGATCAGCCCGATCCCCCTCTGCATGCTGCCGATCC
66 AGGCAAAATGCGCAAG--TGTGGATCAGCCCGATCCCCC-CTACGTGCTACCGATCC
98937 CGATGCCAGT
Statistics
Matches: 245, Mismatches: 29, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
157 86 0.35
158 143 0.58
159 15 0.06
160 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.25, T:0.20
Consensus pattern (157 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCGGAG
AGGCAAAATGCGCAAGTGTGGATCAGCCCGATCCCCCCTACGTGCTACCGATCCTGCTACTACAA
CTCTCAGTTCGGTCCAATCTTAGACTA
Found at i:99184 original size:26 final size:26
Alignment explanation
Indices: 99148--99200 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
99138 TCGATCCGAT
*
99148 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
99174 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
99200 C
1 C
99201 CTATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:99906 original size:26 final size:26
Alignment explanation
Indices: 99868--99920 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
99858 GGCTCAAAAT
99868 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
99894 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGCATG
99920 C
1 C
99921 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:100400 original size:26 final size:26
Alignment explanation
Indices: 100364--100416 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
100354 TCGGTCCGAT
100364 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
100390 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
100416 C
1 C
100417 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:100782 original size:26 final size:26
Alignment explanation
Indices: 100743--100794 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
100733 TCCGATCTGA
*
100743 TCTTAGACTGGGAATGAACTTCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
100769 TCTTAGACAT-GGAATGAACTCCGTAT
1 TCTTAGAC-TGGGAATGAACTCCGTAT
100795 GCCTAAACCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:101681 original size:26 final size:26
Alignment explanation
Indices: 101643--101695 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
101633 GGCTCAAAAT
101643 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
101669 CTTAGAC-ATGGAATGAGCTCTGTATG
1 CTTAGACTA-GGAATGAACTCCGTATG
101695 C
1 C
101696 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:102149 original size:26 final size:26
Alignment explanation
Indices: 102120--102172 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
102110 TCGATTCGAT
*
102120 CTTAGACTGGGAATGACCTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
102146 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
102172 C
1 C
102173 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:102526 original size:26 final size:26
Alignment explanation
Indices: 102489--102544 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
102479 CTGGTCTGAT
* **
102489 CTTAGACTTGGAATGTACTCCATATG
1 CTTAGACATGGAATAAACTCCATATG
*
102515 CTTAGACATGGAATAAACTCCGTATG
1 CTTAGACATGGAATAAACTCCATATG
102541 CTTA
1 CTTA
102545 AGCCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (26 bp):
CTTAGACATGGAATAAACTCCATATG
Found at i:103029 original size:26 final size:26
Alignment explanation
Indices: 102989--103067 Score: 106
Period size: 26 Copynumber: 3.0 Consensus size: 26
102979 CTGATCTGAT
* *
102989 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGATTGGAAATGAACTTCGTATG
*
103015 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGATTGGAAATGAACTTCGTATG
*
103041 CTTAGATTGGAGATGAAC-TCTGTATG
1 CTTAGATTGGAAATGAACTTC-GTATG
103067 C
1 C
103068 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGAAATGAACTTCGTATG
Found at i:104063 original size:158 final size:157
Alignment explanation
Indices: 103773--104264 Score: 404
Period size: 158 Copynumber: 3.1 Consensus size: 157
103763 GCTTATACAT
* ** * * * * * *
103773 GGAATGAACTCCGTATGCCCAAGCTATCCCACGAAATGAGCGTGCCGATGCTCAGCCGGCC-AGA
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGA-A
* * ** * * * ** * * * *
103837 GAGGCAGAATGCACAAGTCGGGGATCGGCCCGATCCCCCCTACATGCTGTCGATCTTGCTACCCC
65 AAGGCAGAATACACAAACCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACT-GCGC
103902 AACCCTCGGTCCGATCTGATCTTAGACTG
129 AACCCTCGGTCCGATCTGATCTTAGACTG
* * * * *
103931 GGAATGAACTCCATATGCATAAGTCAACCCACGAAACGAGTGTGCGGGTGTTGAGCCGACCGAAG
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAA
* * * * ** *
103996 AGGCATAATGCGA-AAACCGGGGATC-AGCCCGGTCCCTCTCTGCGTGCTGTCGGTCC-ACTAG-
66 AGGCAGAATAC-ACAAACCGGGGATCGA-CCCGATCCC-CCCTGCGTGCTACCGATCCTACT-GC
* * * * **
104057 GACAACCTTTGGTCTG-GCTGGGGCTTAGACAT-
127 G-CAACCCTCGGTCCGATCT-GATCTTAGAC-TG
* * * * *
104089 AGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAA
1 GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAA
* *
104154 AGGTAGAATACACAAGCCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCA
66 AGGCAGAATACACAAACCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTG-CGCA
*
104219 ACCCTCGGTCCAATCTGATCTTAGACTG
130 ACCCTCGGTCCGATCTGATCTTAGACTG
*
104247 GGAATGAACTCCGTATGC
1 GGAATGAACTCCATATGC
104265 TTAGACTGCG
Statistics
Matches: 260, Mismatches: 60, Indels: 28
0.75 0.17 0.08
Matches are distributed among these distances:
157 20 0.08
158 219 0.84
159 21 0.08
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.19
Consensus pattern (157 bp):
GGAATGAACTCCATATGCATAAGCCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGACCGAAA
AGGCAGAATACACAAACCGGGGATCGACCCGATCCCCCCTGCGTGCTACCGATCCTACTGCGCAA
CCCTCGGTCCGATCTGATCTTAGACTG
Found at i:104281 original size:26 final size:26
Alignment explanation
Indices: 104238--104290 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
104228 CCAATCTGAT
104238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
104264 CTTAGACTGCGGAA-GAACTCTGTATG
1 CTTAGACTG-GGAATGAACTCCGTATG
104290 C
1 C
104291 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 21 0.84
27 4 0.16
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:104576 original size:355 final size:353
Alignment explanation
Indices: 103985--104674 Score: 940
Period size: 355 Copynumber: 1.9 Consensus size: 353
103975 CGGGTGTTGA
* * * *
103985 GCCGACCGAAGAGGCATAATGCGAAAACCGGGGATCAGCCCGGTCCCTCTCTGCGTGCTGTCGGT
1 GCCGACCGAAGAGGCATAATCCGAAAACCGAGGAACAGCCCGGTCCCTCTCTGCGTGCTGTCGAT
** * * *
104050 CCACTAGGACAACCTTTGGTCTGGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCA
66 CCACTACCACAACCTTCGATCTAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCA
* * * *
104115 ACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCGAAAAGGTAGAATACACAAGCCGGGGATCG
131 ACCCATGAAACGAGCATCCGAGTGCTCAGCCAGCCGAAAAGGTAGAATACACAAGCCGGGGATCG
*
104180 ACCCGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCAATCTGATCTTAGAC
196 ACCCGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGAC
* *
104245 TGGGAATGAACTCCGTATGCTTAGAC-TGCGGAA-GAACTCTGTATGCCTAAGTCAACCCATGAA
261 TGGGAATGAACTCCGTATGCATAGACAT--GGAATGAACTCTGTATGCCTAAG-CAACCCACGAA
104308 ACGAGCATGCGGGTGCCCAGCCACCGGAGAG
323 ACGAGCATGCGGGTGCCCAGCCACCGGAGAG
* * ** *
104339 GCCGACCGGAGAGGCATAATCCGTAAGTCGAGGAACAGCCCGGTCCCTCTTTGCGTGCTGTCGAT
1 GCCGACCGAAGAGGCATAATCCGAAAACCGAGGAACAGCCCGGTCCCTCTCTGCGTGCTGTCGAT
* * * * *
104404 CCCGCTACCACAAACC-TCGATCTAGTTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGC
66 -CCACTACCAC-AACCTTCGATCTAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGC
* * * * *
104468 CAACCCATGAGACGAGCATCCGAGTGCTCAGCCAGCC-AGAGAGGTAGAGTGCATAAGCCGGGGA
129 CAACCCATGAAACGAGCATCCGAGTGCTCAGCCAGCCGA-AAAGGTAGAATACACAAGCCGGGGA
* * **
104532 TCGACCCGATCCCCCCCTGCGTGCTGCCGATCCTA-TGTCGCAACCCTCGGTCCGGTCCGATCTT
193 TCGACCCGAT-CCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCAATCCGATCTT
* *
104596 AGACTGGGAATGAACTCCGTATGCATATACATGGAATGAACTCTGTATGCCTAAGCCACCCACGA
257 AGACTGGGAATGAACTCCGTATGCATAGACATGGAATGAACTCTGTATGCCTAAGCAACCCACGA
*
104661 AACGAGCGTGCGGG
322 AACGAGCATGCGGG
104675 CGTTCAATCG
Statistics
Matches: 292, Mismatches: 38, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
354 82 0.28
355 182 0.62
356 28 0.10
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (353 bp):
GCCGACCGAAGAGGCATAATCCGAAAACCGAGGAACAGCCCGGTCCCTCTCTGCGTGCTGTCGAT
CCACTACCACAACCTTCGATCTAGCTGGGGCTTAGACATAGAATGAACTCCCTATGCCTAAGCCA
ACCCATGAAACGAGCATCCGAGTGCTCAGCCAGCCGAAAAGGTAGAATACACAAGCCGGGGATCG
ACCCGATCCCCCCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCCAATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCATAGACATGGAATGAACTCTGTATGCCTAAGCAACCCACGAAACG
AGCATGCGGGTGCCCAGCCACCGGAGAG
Found at i:105045 original size:159 final size:158
Alignment explanation
Indices: 104624--105068 Score: 423
Period size: 159 Copynumber: 2.8 Consensus size: 158
104614 GTATGCATAT
* * * * * *
104624 ACATGGAATGAACTCTGTATGCCTAAGCC-ACCCACGAAACGAGCGTGCGGGCGTTCAATCGACC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATG-GAGTGCGGGCGCTCAGTCGGCC
* * * * * * * *
104688 GGAAAGGCAGAATACGCAAACTGGGGATCGGCCCGATCCCTCTCAGCGTGCTATCGATCCTGCTG
65 AGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTGCTG
** * * *
104753 CTGTAACCCTCAGACCGATTTGATCTTAG
130 CCATAACCCTCAGACCGACTGGAGCTTAG
* * * * *
104782 AC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAAT-AATGTGCGGGTGCTAAGCCGG
1 ACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACG-AAATGGA-GTGCGGGCGCTCAGTCGG
* * * * * * *
104845 CCAGAGAGGCATAATGCGTAAGC-CAGGGATCGGCTCTGTCCCCCTCTGCGTGCTGTCGGTCCTG
63 CCAGAGAGGCAGAATGCGCAAGCTGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTG
* * * *
104909 TTGCCATAACCCTCCGTCCGACTGGGGCTTAG
127 CTGCCATAACCCTCAGACCGACTGGAGCTTAG
*
104941 ACATGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGAGTGCGGGCGCTCAGTCGGCC
1 ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAAT-GGAGTGCGGGCGCTCAGTCGGCC
* * * * * *
105006 AGAGAGGCAGAATGCACAAGCTGAGTATCAGCCCGGTCCCCC-CTGCGTGTTACCAATCCTGCT
65 AGAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTGCT
105069 ACTGCAATCC
Statistics
Matches: 223, Mismatches: 55, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
157 1 0.00
158 44 0.20
159 172 0.77
160 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.20
Consensus pattern (158 bp):
ACATGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGGAGTGCGGGCGCTCAGTCGGCCA
GAGAGGCAGAATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCGTGCTATCGATCCTGCTGC
CATAACCCTCAGACCGACTGGAGCTTAG
Found at i:106938 original size:170 final size:159
Alignment explanation
Indices: 106656--107096 Score: 379
Period size: 159 Copynumber: 2.7 Consensus size: 159
106646 CCGACTGGGG
* * * *** *
106656 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACTCACGAAATGAGCGTGTGGGCGCTCAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAAGCACTCAGC
*
106721 CAGCCAGAGAGGCAGAATGCGCAAGCTGAGGATCAACCCGATCCCCCCTACATGCTGTCAATCCT
66 CAGCCAGAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGATCCCCCC--C-TGC-G----TCCT
* * *
106786 GCTGCTGGTCCTACTA-TCGCAACCTTCAGTCTGGTCTGAT
123 G-T-C-GATCCTACTACT-GCAACCTTCACTCCGGTCTGAT
*
106826 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAAGCACTCAGT
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAAGCACTCAGC
* ** * * * * *
106891 CGGCTGGAGAGGTAGAATGCGGAAGCCAG-GGA-CTAGCCCGGTCCCCCCCTGCGTGCTGTCGAT
66 CAGCCAGAGAGGCAGAATGCGCAAG-CAGAGGATC-AACCCGATCCCCCCCTGCGTCCTGTCGAT
*
106954 CCTCCTACTGCAACCTTCACTCCGGTCTGAT
129 CCTACTACTGCAACCTTCACTCCGGTCTGAT
* * * * * * ** ** *
106985 CTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTGAGC
1 CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAAGCACTCAGC
* * * *
107050 CAGTCGGAGAGGCATAATGCGCAAGCCAGA-GATCGACCC-AGTCCCCC
66 CAGCCAGAGAGGCAGAATGCGCAAG-CAGAGGATCAACCCGA-TCCCCC
107097 TCTACGTGCT
Statistics
Matches: 223, Mismatches: 42, Indels: 23
0.77 0.15 0.08
Matches are distributed among these distances:
159 115 0.52
160 3 0.01
161 1 0.00
162 4 0.02
166 1 0.00
167 3 0.01
168 1 0.00
169 1 0.00
170 92 0.41
171 2 0.01
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (159 bp):
CTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACGAAATGAGCATGCAAGCACTCAGC
CAGCCAGAGAGGCAGAATGCGCAAGCAGAGGATCAACCCGATCCCCCCCTGCGTCCTGTCGATCC
TACTACTGCAACCTTCACTCCGGTCTGAT
Found at i:107127 original size:159 final size:155
Alignment explanation
Indices: 106803--107321 Score: 406
Period size: 159 Copynumber: 3.3 Consensus size: 155
106793 GTCCTACTAT
* * * *
106803 CGCAACCTTCAGTCTGGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCCACG
1 CGCAACCCTCA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * ** * * * * * * *
106868 AAATGAGCATGCAAGCACTCAGTC-GGCTGGAGAGGTAGAATGCGGAAGCCAGGGA-CTAGCCCG
65 AAACGAGCGTGCGGGCGCTCAGCCAGTC-GGAGAGGCAGAATGCGCAAGCCAGAGATCGA-CCC-
* * * *
106931 GTCCCCCCCTGCGTGCTGTCGATCCTCCTAC
127 GTCCCCCTCTACGTGCTG-CGAT-CTCTTGC
* * * *
106962 TGCAACCTTCACTCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATG
1 CGCAACCCTCA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACG
* * *
107027 AAACGAGCGTGCGGGTGCTGAGCCAGTCGGAGAGGCATAATGCGCAAGCCAGAGATCGACCCAGT
65 AAACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCC-GT
*
107092 CCCCCTCTACGTGCTGCGGGTCTCATTGC
129 CCCCCTCTACGTGCTGC-GATCTC-TTGC
* ** * ** *
107121 CCCAACCCTCGAT-TTGACTGGGGCTTAGACAT-GGAATGAACTCCCTATGTCTAAGCCAACCCA
1 CGCAACCCTC-ATCCGGTCT-GATCTTAGAC-TGGGAATGAACTCCCTATGCCTAAGCCAACCCA
* * ** * *
107184 CAAAAC-AGGGGTATGGGCGCTCAGCCAGTCAGAGAGGCAGAATGCGCAAGTC-GAGGATCGACC
63 CGAAACGA-GCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAGA-GATCGACC
* * *
107247 CGATCCCTCT-TACGTGCTACTGATC-CTGCTGT
126 CG-TCCCCCTCTACGTGCTGC-GATCTCT--TGC
*
107279 CGCAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTC
1 CGCAACCCTC-ATCCGGTCTGATCTTAGACTGGGAATGAACTC
107322 TATATGCTTA
Statistics
Matches: 286, Mismatches: 60, Indels: 29
0.76 0.16 0.08
Matches are distributed among these distances:
156 1 0.00
157 2 0.01
158 55 0.19
159 222 0.78
160 6 0.02
ACGTcount: A:0.24, C:0.30, G:0.25, T:0.20
Consensus pattern (155 bp):
CGCAACCCTCATCCGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCCACGA
AACGAGCGTGCGGGCGCTCAGCCAGTCGGAGAGGCAGAATGCGCAAGCCAGAGATCGACCCGTCC
CCCTCTACGTGCTGCGATCTCTTGC
Found at i:107338 original size:26 final size:26
Alignment explanation
Indices: 107302--107354 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
107292 CCGATCTGAT
107302 CTTAGACTGGGAATGAAC-TCTATATG
1 CTTAGACTGGGAATGAACTTC-ATATG
*
107328 CTTAGACTGGGGATGAACTTCATATG
1 CTTAGACTGGGAATGAACTTCATATG
107354 C
1 C
107355 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCATATG
Found at i:108025 original size:26 final size:26
Alignment explanation
Indices: 107987--108039 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
107977 GGCTGAAAAT
107987 CTTAGACTGGGAATGAACTTT-GTATG
1 CTTAGACTGGGAATGAA-TTTCGTATG
108013 CTTAGACAT-GGAATGAATTTCGTATG
1 CTTAGAC-TGGGAATGAATTTCGTATG
108039 C
1 C
108040 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 3 0.12
26 21 0.84
27 1 0.04
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAATTTCGTATG
Found at i:108373 original size:159 final size:159
Alignment explanation
Indices: 108012--108439 Score: 468
Period size: 159 Copynumber: 2.7 Consensus size: 159
108002 AACTTTGTAT
* * * * * *
108012 GCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAG
* * * *
108077 CCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGA-CCTGACCCCCCCCACGTGCTGTCGATC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCCACGTGCTGTCGATC
* * ** ** *
108141 TTGTTGCTGCTTCCCTCCATCCGGTCTGA
131 TCGCTGCCACAACCCTCCATCCGGACTGA
* * * ** *
108170 TCTTAGAC-TGGGAATGAACTCTGTATGCATAAGTTAACCCATGAAACAAGCATGCGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCA
* * * ** *
108234 GCCGGCCGAAGAGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGT
65 GCCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCCACGTGCTGTCGAT
*
108299 CTCGCTGCCACAACCCT-CAGTCC-GACTGGG
130 CTCGCTGCCACAACCCTCCA-TCCGGACT-GA
* * *
108329 GCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACAGGCATGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAG
* * * *
108394 TCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCC
66 CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCC
108440 TCCTACGTGC
Statistics
Matches: 221, Mismatches: 44, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
157 1 0.00
158 90 0.41
159 129 0.58
160 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.28, T:0.18
Consensus pattern (159 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACAAGCATGCGGGCGCTCAG
CCGGCCGGAGAGGCATAATGCGCAAGCCGAGGATCGACCCAGTCCCCCCCCACGTGCTGTCGATC
TCGCTGCCACAACCCTCCATCCGGACTGA
Found at i:108891 original size:158 final size:159
Alignment explanation
Indices: 108508--109167 Score: 573
Period size: 159 Copynumber: 4.2 Consensus size: 159
108498 ACTCCCTATG
* * **
108508 CTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATGAAACGAGCGCGTAGGCACTCAGC
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * *
108573 CGACCAGG-GAGGTAGAATGCGCAAGTCAGGGATCGGCCTGGTCCCCCTTTGCGTGCTATCAATC
66 CGGCC-GGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTACGTGCTATCAATC
* * * *
108637 CTGTTGTCGCAACCCTCGATCTG-GTCTGAT
130 CTGCTGCCGCAACCCTCGATCTGATTC-AAT
* * *
108667 CTTAGACATGGAATGAACTTCGTATGCCTAGGCCAACCCAAGAAACGAGCGTGCGGGTC-CTCAG
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGG-CACTCAG
* * * * *
108731 CCGGCCGGAGAGGCAGAATGCGTAAGTC-GAGGATCGGCCCGGT-CCCCTCTACGTCCTGTCGAT
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCAG-GGATCGACCCGGTCCCCCTCTACGTGCTATCAAT
* * *
108794 CTTGCTGCCGCAACCCTCGGTCTGGTTCAAT
129 CCTGCTGCCGCAACCCTCGATCTGATTCAAT
* * * * * * *
108825 CTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAACCCACGAAATGAGTGTGTGGGCACTGAG
1 CTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
** * * * * ** *
108889 CCGGCCAAAGTGGCATAATGCGCACGTCAGGGATCGACCCAGTCCCCCTCTGGGTGCTACCAATC
65 CCGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTACGTGCTATCAATC
** * * * ****
108954 CCACTGCCACAACCCTCGGTCTGACTGGGG
130 CTGCTGCCGCAACCCTCGATCTGATTCAAT
* * * * * * *
108984 CTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGGCATGCGGGTACCCAGT
1 CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
* * * * * * * *
109049 CGGCCGGGGAGGTA-AATGCGCAAGTCGGGGATCCACTCGGTCCCCC-CTACGTGTTGTCGATCC
66 CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTACGTGCTATCAATCC
* * * *
109112 TGCTGTCGAAACCCTCGATCCGATCCAAT
131 TGCTGCCGCAACCCTCGATCTGATTCAAT
*
109141 CTTAGAC-TGGGAATGAACTCCATATGC
1 CTTAGACAT-GGAATGAACTCCGTATGC
109168 TTAGACTGGG
Statistics
Matches: 396, Mismatches: 95, Indels: 22
0.77 0.19 0.04
Matches are distributed among these distances:
156 1 0.00
157 53 0.13
158 151 0.38
159 189 0.48
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
CTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAGC
CGGCCGGAGAGGCAGAATGCGCAAGTCAGGGATCGACCCGGTCCCCCTCTACGTGCTATCAATCC
TGCTGCCGCAACCCTCGATCTGATTCAAT
Found at i:108924 original size:495 final size:494
Alignment explanation
Indices: 107985--108934 Score: 1135
Period size: 495 Copynumber: 1.9 Consensus size: 494
107975 GTGGCTGAAA
*** *
107985 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGACATGGAATGAATTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
* * * *
108050 CCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCGGAGAGGTAGAATGCGCAAGCCGAGGATCGAC
66 CCACGAAACGAGCGCGCAGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCAGAGGATCGAC
* * * **
108115 CTGACCCCCCCCACGTGCTGTCGATCTTGTTGCTGCTTCCCTCCATCCGGTCTGATCTTAGACTG
131 CTGACCCCCCCCACGTGCTATCAATCCTGTTGCTGCAACCCTCCATCCGGTCTGATCTTAGACTG
** * *
108180 GGAATGAACTCTGTATGCATAAGTTAACCCATGAAACAAGCATGCGGGCGCTGAGCCGGCCGAAG
196 GGAATGAACTCTGTATGCATAAGCCAACCCAAGAAACAAGCATGCGGGCGCTCAGCCGGCCGAAG
* * * *
108245 AGGCATAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTGCGTGCTGTCGGTCTCGCTGCCAC
261 AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTCCTGTCGATCTCGCTGCCAC
*** * *
108310 AACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAA
326 AACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAA
** * ** * *
108375 CAGGCATGCGGGTGCTCAGTCGACCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTCCC
391 CAGG-ATGCGGGCACTCAGCCGACCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCC
108440 TCCTACGTGCTGCCACTGCCGCAACCCTTGGTCCGGTCCG
455 TCCTACGTGCTGCCACTGCCGCAACCCTTGGTCCGGTCCG
108480 ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
1 ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
* *
108545 CCATGAAACGAGCGCGTAGGCACTCAGCCGACCAGG-GAGGTAGAATGCGCAAGTCAG-GGATCG
66 CCACGAAACGAGCGCGCAGGCACTCAGCCGACC-GGAGAGGTAGAATGCGCAAG-CAGAGGATCG
* * **** * *
108608 GCCTGGTCCCCCTTTGCGTGCTATCAATCCTGTTG-TCGCAACCCTCGATCTGGTCTGATCTTAG
129 ACCT-GACCCCCCCCACGTGCTATCAATCCTGTTGCT-GCAACCCTCCATCCGGTCTGATCTTAG
* * * *
108672 ACAT-GGAATGAACT-TCGTATGCCTAGGCCAACCCAAGAAACGAGCGTGCGGGTC-CTCAGCCG
192 AC-TGGGAATGAACTCT-GTATGCATAAGCCAACCCAAGAAACAAGCATGCGGG-CGCTCAGCCG
* * * * *
108734 GCCGGAGAGGCAGAATGCGTAAGTCGAGGATCGGCCCGGT-CCCCTCTACGTCCTGTCGATCTTG
254 GCCGAAGAGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTCCTGTCGATCTCG
* * * ** * * *
108798 CTGCCGCAACCCTCGGTCTGGTTCAATCTTAGAC-TAGGAATGAACTCCGTATGCATAAGTCAAC
319 CTGCCACAACCCTCAGTCCGACTCAAGCTTAGACAT-GGAATGAACTCCCTATGCATAAGCCAAC
* * * * * * *
108862 CCACGAAATGAGTG-TGTGGGCACTGAGCCGGCCAAAGTGGCATAATGCGCACGTCAGGGATCGA
383 CCACGAAA-CAG-GATGCGGGCACTCAGCCGACCAAAGAGGCATAATGCGCAAGCCAGGGATCGA
108926 CCCAGTCCC
446 CCCAGTCCC
108935 CCTCTGGGTG
Statistics
Matches: 378, Mismatches: 67, Indels: 20
0.81 0.14 0.04
Matches are distributed among these distances:
494 1 0.00
495 240 0.63
496 134 0.35
497 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (494 bp):
ATCTTAGACTGGGAATGAACTCCCTATGCTTAGACATGGAATGAACTTCGTATGCCTAAGCCAAC
CCACGAAACGAGCGCGCAGGCACTCAGCCGACCGGAGAGGTAGAATGCGCAAGCAGAGGATCGAC
CTGACCCCCCCCACGTGCTATCAATCCTGTTGCTGCAACCCTCCATCCGGTCTGATCTTAGACTG
GGAATGAACTCTGTATGCATAAGCCAACCCAAGAAACAAGCATGCGGGCGCTCAGCCGGCCGAAG
AGGCAGAATGCGCAAGCCGAGGATCGACCCGGTCCCCCTCTACGTCCTGTCGATCTCGCTGCCAC
AACCCTCAGTCCGACTCAAGCTTAGACATGGAATGAACTCCCTATGCATAAGCCAACCCACGAAA
CAGGATGCGGGCACTCAGCCGACCAAAGAGGCATAATGCGCAAGCCAGGGATCGACCCAGTCCCT
CCTACGTGCTGCCACTGCCGCAACCCTTGGTCCGGTCCG
Found at i:109170 original size:26 final size:26
Alignment explanation
Indices: 109141--109193 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
109131 CCGATCCAAT
109141 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
109167 CTTAGACTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
109193 C
1 C
109194 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:109912 original size:26 final size:26
Alignment explanation
Indices: 109872--109924 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
109862 GGCTCAAAAT
*
109872 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
109898 CTTAGACATGG-AATGAACTCCATATG
1 CTTAGAC-TGGCAATGAACTCCATATG
109924 C
1 C
109925 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:110286 original size:159 final size:158
Alignment explanation
Indices: 110065--110358 Score: 347
Period size: 159 Copynumber: 1.9 Consensus size: 158
110055 CTTAGACTGG
* ** * * * * *
110065 GAATGAACTCCGTATGCCTAAGTTAACCCACGGAACGAGCGTGCGGGCGCTGAGCCAGTCGGAGA
1 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCAGTCGGAGA
* * * * * * * *
110130 GGCATAACACGTAAGTTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGTGCCGCTGCCACA
66 GGAAGAACACGTAAGTCGAGGATCGACCCGATCCCCC-CTGCGTGCTACCGATGCCGCTGCCACA
110195 ACCCTCAGTTCAGCTGGGGCTTAGACATT
130 ACCCTCAGTTCAGCTGGGGCTTAGACATT
* *
110224 GAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGGCGTACGGACGCTCAACC-GATCGGAG
1 GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCAG-TCGGAG
* ** * * *
110288 AGGAAGGATGCGTAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTATCGATTCTGCTGCCACA
65 AGGAAGAACACGTAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATGCCGCTGCCACA
110353 ACCCTC
130 ACCCTC
110359 GGTCCGATCC
Statistics
Matches: 110, Mismatches: 24, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
158 29 0.26
159 81 0.74
ACGTcount: A:0.22, C:0.31, G:0.28, T:0.18
Consensus pattern (158 bp):
GAATGAACTCCCTATGCCTAAGCCAACCCACGAAACGAGCGTACGGACGCTCAACCAGTCGGAGA
GGAAGAACACGTAAGTCGAGGATCGACCCGATCCCCCCTGCGTGCTACCGATGCCGCTGCCACAA
CCCTCAGTTCAGCTGGGGCTTAGACATT
Found at i:110846 original size:498 final size:500
Alignment explanation
Indices: 110052--112009 Score: 1307
Period size: 498 Copynumber: 3.8 Consensus size: 500
110042 GGTCCGGTCC
* * * * * *
110052 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGGAACGAGCGTGCGGGCGCTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTA
* *
110117 AGCCAGTCGGAGAGGCATAACACGTAAGTTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
66 AGCCAGTCGAAGAGGCATAACACG-AAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGG
* * * * * *
110182 TGCCGCTGCCACAACCCTCAGTTCAGCTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGC
130 TCCCACCGCCACAACCCTCAGTTCAGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * * * *
110247 CAACCCATGAAACGGGCGTACGGACGCTCAACCGATCGGAGAGGAAGGATGCGTAAGTCGAGGAT
195 CAACCCACGAAACGGGCGTACGGACGCTCAACCGACCGGAGAGGAAGAACGCGCAAGCCGAGGAT
* * * * **
110312 CGACCCGATCCCCCCTGCGTGCTATCGATTCTGCTGCCACAACCCTCGGTCCGATCCGATCTTGG
260 CGACCCGATCACCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTAC
*
110377 ACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAA
325 ACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAA
*
110442 ACGAGCGTGCGGGTGCTCAGCAGGCCAGAGAGGCAGAATGCGCAACCAGGGGATCGAACTAGTCC
390 ACGAGCATGCGGGTGCTCAGCAGGCCAGAGAGGCAGAATGCGCAACCAGGGGATCGAACTAGTCC
110507 CCCCTGCGTGCTGTCGATCCTGCTGCTGCAACTTTTGGTCCAATGT
455 CCCCTGCGTGCTGTCGATCCTGCTGCTGCAACTTTTGGTCCAATGT
*
110553 GATCTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTA
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTA
* * * * *
110618 AGCCGGTCGAAGAGGCAT-CCAC-AAGTCGGGGATCGGCCTGGTCCCTCTCTGCGTGCTGTCGGT
66 AGCCAGTCGAAGAGGCATAACACGAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGT
* *
110681 CCCACCGCCACAACCCTC-GGTCTGACTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
131 CCCACCGCCACAACCCTCAGTTCAG-CTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGC
* * * ** * *
110745 CAACCCACGAAATGGGCGTGCGGGCGCTCAGTCGGCCGGAGAGGCAGAACGCGCAAGCCTG-GGA
195 CAACCCACGAAACGGGCGTACGGACGCTCAACCGACCGGAGAGGAAGAACGCGCAAGCC-GAGGA
* * * * *
110809 TCGACCTGATCACCCCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCTGGTTCGATCTTA
259 TCGACCCGATCACCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTA
* * *
110874 CACTGGGAATGAACTCCATATGCTTAGACTGGGTATGAACTCCGTATGCCTAAGTCAATCCATGA
324 CACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGA
*** * * *
110939 AACGAGCATGCGGACACTCAGTCGGCCGAAGAGGCCGATTGAAGAGGCATAATTCGCAAGCC-GA
389 AACGAGCATGCGGGTGCTCA----G-C----AGGCC-A--G-AGAGGCAGAATGCGCAA-CCAGG
* * ** * * * ** *
111003 GGAT-TAGCCCGGTCCCCCTCTACATGCTGCCAATCCCACTGCCTGTCCTGCTGCCACAACCCTC
440 GGATCGA-ACTAGTCCCCC-CTGCGTGCTG----T-CGA-T-CCTG--CTGCTG---CAACTTTT
* *
111067 GATCCGACTG-
491 GGTCC-AATGT
** * * * * * * *
111077 GGGCTTAGACAT-GGAATGAATTCCGTATGCCTAAGCCAACCCATGAAACGAGCTTGC-GACCGC
1 GATCTTAGAC-TGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAG-GCAC
* * * * ** * * * * *
111140 TCAGCCAGTCGGAGAGACAGAATGCGCAAGCCGGGAATCAGCCCGATCCCCCTCTGCGTGCTGTC
64 TAAGCCAGTCGAAGAGGCATAACACG-AAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCC
* * * * * *
111205 GATCCCGCTACCGGTCCTGTTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAATGAACT
128 GGT-CC-C-A-----CC----GCCACAACCCTCAGTTCAGCTAGAGCTTAGACATGGAATGAACT
* * * * * * * * * *
111270 CCGTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCGCTCAACCGGCCAGAGAGGTAGAATG
181 CCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGACGCTCAACCGACCGGAGAGGAAGAACG
* * * * *
111335 TGCAAGTCC-AGGATCGA-ACGGTC-CCACCTGTATGCTGTCGATCCTGCTGCTGGTCCTGCTGC
246 CGCAAG-CCGAGGATCGACCCGATCACC-CC--TA--C-GT-G---CTAC--C-GATCCTGCTGC
** * * * * ** * * *
111397 CGTAACCTTCGGTCCGGTCCAATCTTAGACTGTTAATGAACTCCGTATGCTTAGACAT-GGAATA
297 CACAACCCTCGGTCCGATCCGATCTTACACTGGGAATGAACTCCATATGCTTAGAC-TGGGGATG
* * * * ** * ** * *
111461 AACTCTGTATGTCTCAGCCAACCCACGAAACGAGCATGCAGGGCACTCAATC-GATCGGAGAAGC
361 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGC-GGGTGCTC-AGCAGGCCAGAGAGGC
* * * * ** * * * * * *
111525 A-ACATGCGTAAGCC-GGAGACCGACCCGGTCCCCTCCAGTGTGCTGTCGATCCTACTACCGAAA
424 AGA-ATGCGCAA-CCAGGGGATCGAACTAGTCCCC-CCTGCGTGCTGTCGATCCTGCTGCTGCAA
** * ** **
111588 CCCTCGGTCTGATCC
486 CTTTTGGTCCAATGT
* ** * * * *
111603 AATCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTG
1 GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTA
* ** * * * **
111668 AG-CTGATCGAAGAGGCATAATGCGCAAGCCAGGGATC-GCCCGATCCCCCTCTGCGTGCTGTTG
66 AGCCAG-TCGAAGAGGCATAACACG-AAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCG
* * * * * * * *
111731 ATCCCGCTGCCACAACCCTC-GGTCCGACTGGGGCTTA-ACATGGAATGTACTCCCTATGCCTAA
129 GTCCCACCGCCACAACCCTCAGTTCAG-CTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAA
* * * * * *
111794 GCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGATCGGAG-CGACAGAATGTGCAAGCCGAG
193 GCCAACCCACGAAACGGGCGTACGGACGCTCAACCGACCGGAGAGGA-AGAACGCGCAAGCCGAG
** * * * * ** * * **
111858 GATC-AGCCCGGCCCCCCCTGCATGTTGTCGATCCTACTGCC-TAACCCTCGGTCCGATTTGATC
257 GATCGA-CCCGATCACCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATC
* * * * *
111921 TTAGACTGGGAATAAACTCCGTATGCTTAGACTGAGGATGAACTCCGTATGCCTAAGTCAATCCA
321 TTACACTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCA
* * *
111986 CGAAACTAGCGTGCGGGCGCTCAG
386 CGAAACGAGCATGCGGGTGCTCAG
112010 TCGATCGAAG
Statistics
Matches: 1155, Mismatches: 221, Indels: 165
0.75 0.14 0.11
Matches are distributed among these distances:
497 4 0.00
498 269 0.23
499 9 0.01
500 84 0.07
501 84 0.07
502 2 0.00
503 1 0.00
504 2 0.00
507 6 0.01
508 2 0.00
509 1 0.00
510 2 0.00
511 33 0.03
512 90 0.08
513 28 0.02
514 2 0.00
516 1 0.00
517 3 0.00
518 1 0.00
519 4 0.00
521 6 0.01
523 2 0.00
524 75 0.06
525 36 0.03
526 88 0.08
527 35 0.03
528 2 0.00
529 5 0.00
530 1 0.00
531 3 0.00
532 1 0.00
533 2 0.00
534 1 0.00
535 2 0.00
537 3 0.00
538 39 0.03
539 105 0.09
540 7 0.01
542 3 0.00
543 2 0.00
544 1 0.00
547 5 0.00
549 1 0.00
550 93 0.08
551 8 0.01
552 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (500 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTA
AGCCAGTCGAAGAGGCATAACACGAAGTCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGGT
CCCACCGCCACAACCCTCAGTTCAGCTAGAGCTTAGACATGGAATGAACTCCCTATGCCTAAGCC
AACCCACGAAACGGGCGTACGGACGCTCAACCGACCGGAGAGGAAGAACGCGCAAGCCGAGGATC
GACCCGATCACCCCTACGTGCTACCGATCCTGCTGCCACAACCCTCGGTCCGATCCGATCTTACA
CTGGGAATGAACTCCATATGCTTAGACTGGGGATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCATGCGGGTGCTCAGCAGGCCAGAGAGGCAGAATGCGCAACCAGGGGATCGAACTAGTCCC
CCCTGCGTGCTGTCGATCCTGCTGCTGCAACTTTTGGTCCAATGT
Found at i:110888 original size:158 final size:155
Alignment explanation
Indices: 110398--110896 Score: 470
Period size: 158 Copynumber: 3.2 Consensus size: 155
110388 ACTCCATATG
* * *
110398 CTTAGACTGGGGATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
110463 AGGCCAGAGAGGCAGAATGCGCAA-CCAGGGGATCGAACT-AGTCCCCCCTGCGTGCTGTCGATC
66 -GGCCGGAGAGGCAGAACGCGCAAGCC-GGGGATCGACCTGA-T-CCCCCTGCGTGCTGTCGATC
** ** * **
110526 CTGCTGCTGCAACTTTTGGTCCAATGTGAT
127 CTGCTGCCACAACCCTCGGTCTGAT-TGAT
* * * * *
110556 CTTAGATTGGGAATGAACTCCGTATGCATAAGTCAACCCACGAAACGAGCGTGCAGGCACTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * * * * * *
110621 CGGTCGAAGAGGC--ATC-CACAAGTCGGGGATCGGCCTGGTCCCTCTCTGCGTGCTGTCGGTCC
65 CGGCCGGAGAGGCAGAACGCGCAAGCCGGGGATCGACCTGATCCC-C-CTGCGTGCTGTCGATCC
** * * *
110683 CACCGCCACAACCCTCGGTCTGACTAGAG
128 TGCTGCCACAACCCTCGGTCTGA-TTGAT
* * * *
110712 CTTAGACAT-GGAATGAACTCCCTATGCCTAAGCCAACCCACGAAATGGGCGTGCGGGCGCTCAG
1 CTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * *
110776 TCGGCCGGAGAGGCAGAACGCGCAAGCCTGGGATCGACCTGATCACCCCTACGTGCTGCCGATCC
65 -CGGCCGGAGAGGCAGAACGCGCAAGCCGGGGATCGACCTGATC-CCCCTGCGTGCTGTCGATCC
*
110841 TGCTGCCACAACCCTCGGTCTGGTTCGAT
128 TGCTGCCACAACCCTCGGTCTGATT-GAT
* *
110870 CTTACACTGGGAATGAACTCCATATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
110897 TTAGACTGGG
Statistics
Matches: 268, Mismatches: 60, Indels: 26
0.76 0.17 0.07
Matches are distributed among these distances:
154 3 0.01
155 16 0.06
156 97 0.36
157 4 0.01
158 125 0.47
159 21 0.08
160 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (155 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
GGCCGGAGAGGCAGAACGCGCAAGCCGGGGATCGACCTGATCCCCCTGCGTGCTGTCGATCCTGC
TGCCACAACCCTCGGTCTGATTGAT
Found at i:110906 original size:26 final size:26
Alignment explanation
Indices: 110870--110922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
110860 CTGGTTCGAT
110870 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
* * *
110896 CTTAGACTGGGTATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
110922 C
1 C
110923 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:111933 original size:157 final size:158
Alignment explanation
Indices: 111565--111946 Score: 369
Period size: 157 Copynumber: 2.4 Consensus size: 158
111555 CCCTCCAGTG
* * * * * ***
111565 TGCTGTCGATCCTACTACCGAAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTTTGTA
1 TGCTGTCGATCCTACTGCCAAAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCCTA
* * * * * * *
111630 TGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTGAGCTGATCGAAGAGGCATAATGCGCAA
66 TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGATCGAAGAGACAGAATGCGCAA
* * *
111695 GCCAGGGATCGCCCGATCCCCCTCTGCG
131 GCCAGGGATCGCCCGAGCCCCCCCTGCA
* ** * * * ** *
111723 TGCTGTTGATCCCGCTGCCACAACCCTCGGTCCGACTGGGGCTTA-ACAT-GGAATGTACTCCCT
1 TGCTGTCGATCCTACTGCCAAAACCCTCGGTCCGATTCGATCTTAGAC-TGGGAATGAACTCCCT
* * * * *
111786 ATGCCTAAGCCAACCCACGAAACGGGCGTACGGGCGCTCAGCCGATCGGAGCGACAGAATGTGCA
65 ATGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGATCGAAGAGACAGAATGCGCA
111851 AGCC-GAGGATCAGCCCG-GCCCCCCCTGCA
130 AGCCAG-GGATC-GCCCGAGCCCCCCCTGCA
* * * * *
111880 TGTTGTCGATCCTACTGCC-TAACCCTCGGTCCGATTTGATCTTAGACTGGGAATAAACTCCGTA
1 TGCTGTCGATCCTACTGCCAAAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCCTA
111944 TGC
66 TGC
111947 TTAGACTGAG
Statistics
Matches: 175, Mismatches: 44, Indels: 11
0.76 0.19 0.05
Matches are distributed among these distances:
156 22 0.13
157 115 0.66
158 38 0.22
ACGTcount: A:0.23, C:0.31, G:0.25, T:0.21
Consensus pattern (158 bp):
TGCTGTCGATCCTACTGCCAAAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAACTCCCTA
TGCCTAAGCCAACCCACGAAACGAGCGTACGGGCACTCAGCCGATCGAAGAGACAGAATGCGCAA
GCCAGGGATCGCCCGAGCCCCCCCTGCA
Found at i:111949 original size:26 final size:26
Alignment explanation
Indices: 111920--111972 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
111910 CCGATTTGAT
111920 CTTAGACTG-GGAATAAACTCCGTATG
1 CTTAGACTGAGG-ATAAACTCCGTATG
*
111946 CTTAGACTGAGGATGAACTCCGTATG
1 CTTAGACTGAGGATAAACTCCGTATG
111972 C
1 C
111973 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGGATAAACTCCGTATG
Found at i:112340 original size:26 final size:26
Alignment explanation
Indices: 112289--112341 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
112279 CCGGTTCGAT
* *
112289 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
112315 CTTAGACAT-GGAATGAACTCCATATG
1 CTTAGAC-TGGGAATGAACTCCATATG
112341 C
1 C
112342 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:112513 original size:26 final size:26
Alignment explanation
Indices: 112484--112536 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
112474 CCAGTCTGAT
*
112484 CTTAGAC-TGGGAATGAACTCTGTATG
1 CTTAGACAT-GGAATGAACTCCGTATG
112510 CTTAGACATGGAATGAACTCCGTATG
1 CTTAGACATGGAATGAACTCCGTATG
112536 C
1 C
112537 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATG
Found at i:118537 original size:159 final size:157
Alignment explanation
Indices: 118288--118601 Score: 371
Period size: 159 Copynumber: 2.0 Consensus size: 157
118278 GTGACACCGG
* * * * *
118288 GGATCGGCCCGGTCCCCCCTGCGTGCTATCGATCCTGCTGTCACAACCTCAGTCCGGTCTGATCT
1 GGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCCGCTGCCACAACCTCAGTCCAGTCTGAGCT
** * ** * *
118353 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATTAAACGAGCGTGCAGGCGCTGAGCCG
66 TAGACTGGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCG
* *
118418 ATCGGAGAGGCATAATGTGCAAGCCAA
131 ATCGGAGAGGCAAAATGCGCAAGCCAA
* * * * *
118445 GGATTGGCCCGGTCCCCCTCTGCGTGCTGCCGGTCCCGCTGCCACAACCCTCGGTCCAG-CTGGG
1 GGATCGGCCCGGTCCCCC-CTGCGTGCTACCGATCCCGCTGCCACAA-CCTCAGTCCAGTCT-GA
* * * *
118509 GCTTAGACAT-GGAATGAACTCCCCATGCCTAAGCCAACCCACGAAATGGGTGTGCGGGCGCTCA
63 GCTTAGAC-TGGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCA
118573 ACCGATCGGAGAGGCAAAATGCGCAAGCC
127 ACCGATCGGAGAGGCAAAATGCGCAAGCC
118602 GGGGATCGAT
Statistics
Matches: 130, Mismatches: 23, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
157 17 0.13
158 25 0.19
159 87 0.67
160 1 0.01
ACGTcount: A:0.22, C:0.32, G:0.28, T:0.18
Consensus pattern (157 bp):
GGATCGGCCCGGTCCCCCCTGCGTGCTACCGATCCCGCTGCCACAACCTCAGTCCAGTCTGAGCT
TAGACTGGGAATGAACTCCCCATGCCTAAGCCAACCCACGAAACGAGCGTGCAGGCGCTCAACCG
ATCGGAGAGGCAAAATGCGCAAGCCAA
Found at i:118712 original size:26 final size:26
Alignment explanation
Indices: 118668--118717 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
118658 CCGGTCCAAT
* *
118668 CTTAGACTGGGAATGAACTTCGTACG
1 CTTAGACTGGGAATAAACTCCGTACG
*
118694 CTTAGACTGGGGATAAACTCCGTA
1 CTTAGACTGGGAATAAACTCCGTA
118718 TGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTACG
Found at i:121085 original size:26 final size:26
Alignment explanation
Indices: 121056--121106 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
121046 CCGATCTGAT
*
121056 CTTAGAC-TGAGAATGAACTCTGTATA
1 CTTAGACATG-GAATGAACTCCGTATA
121082 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGACATGGAATGAACTCCGTAT
121107 GCCTAACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACATGGAATGAACTCCGTATA
Found at i:121281 original size:26 final size:26
Alignment explanation
Indices: 121252--121304 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
121242 CAAGTCTGAT
*
121252 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
121278 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
121304 C
1 C
121305 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:121340 original size:196 final size:195
Alignment explanation
Indices: 120856--121413 Score: 582
Period size: 196 Copynumber: 2.8 Consensus size: 195
120846 GATCCTATTC
* * *
120856 GATCTTAGACCGAGAATGAACTCCGTATGCTTAGACATGGAATGAACTCTGTATGCCTAAACCAA
1 GATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
* * ** * ** *
120921 CCCATGAAATGAGAGTGCGGGTGCTCAGTCGACTCGAAGAGGCAGAATGCATAAGTCGGGGATTG
66 CCCATGAAAT-AGAGTGCAGGCGCTCAAACGAC-CGGAGAGGCAGAATGCGCAAGTCGGGGATCG
* * * * * * *** *
120986 GCCCGATCCCCCCTGCGTGCTACCGATCTTGCTGCTGGTCCTGTGGCCGCAACCCTTGGTCCGAT
129 ACTCGATCCCCCTTGCGTGCTATCGATCTTGTTGCTGGTCCTCTGGCCGCAACCCTCAATCAGAT
121051 CT
194 CT
* *
121053 GATCTTAGACTGAGAATGAACTCTGTATACTTAGACATGGAATGAACTCCGTATGCCTAACCCAA
1 GATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
* * *
121118 CCCATGAAAAAAGGGTGCAAGCGCTCAAACGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA
66 CCCATG-AAATAGAGTGCAGGCGCTCAAACGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGA
* * * * *
121183 CTCGTTCCCTCTTGCATGCTGTCGATCTTGTTGCTGGTCCTACT-GTCGCAACCCTCAATCA-AG
130 CTCGATCCCCCTTGCGTGCTATCGATCTTGTTGCTGGTCCT-CTGGCCGCAACCCTCAATCAGA-
121246 TCT
193 TCT
* * **
121249 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGAGAATGAACTCTGTATGCTTAGACAT-GGAATGAACTCCGTATGCCTAAACCA
* * * * ** * * * * *
121313 ACCCATGAAACTAGCGTACTGGCGCTCAACCGGTCAGAGAGGTATAATGCGCAAGCCGGGGATCA
65 ACCCATGAAA-TAGAGTGCAGGCGCTCAAACGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCG
* * *
121378 ACTTGGTCCCCCTCTGCGTGCTATCGATCCTGTTGC
129 ACTCGATCCCCCT-TGCGTGCTATCGATCTTGTTGC
121414 CACAACCCTC
Statistics
Matches: 300, Mismatches: 55, Indels: 12
0.82 0.15 0.03
Matches are distributed among these distances:
195 5 0.02
196 190 0.63
197 102 0.34
198 3 0.01
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.24
Consensus pattern (195 bp):
GATCTTAGACTGAGAATGAACTCTGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAACCAA
CCCATGAAATAGAGTGCAGGCGCTCAAACGACCGGAGAGGCAGAATGCGCAAGTCGGGGATCGAC
TCGATCCCCCTTGCGTGCTATCGATCTTGTTGCTGGTCCTCTGGCCGCAACCCTCAATCAGATCT
Found at i:121682 original size:146 final size:146
Alignment explanation
Indices: 121411--122134 Score: 424
Period size: 159 Copynumber: 4.8 Consensus size: 146
121401 TCGATCCTGT
* * * *
121411 TGCCACAACCCTCGGTCTGGCTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * *
121476 ATGAAATGGACGTGCGGGCGCTCAGTCGACCGAAGAGGCAGAATGCGCAAGCTGGTGATCGGTCG
66 ATGAAACGGACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGTGATCGGTCG
121541 GGTCCCCCCTGCATGC
131 GGTCCCCCCTGCATGC
* *
121557 TGCCATAACCCTCAGTCCGACTGGGG-TTCAGACATGGAATGAACTCCGTATGCCAAAGCCAACC
1 TGCCACAACCCTCAGTCCGACTGGGGCTT-AGACATGGAATGAACTCCCTATGCCAAAGCCAACC
* * * *
121621 CATGAAAC-GAGCGTGTGGGCACTGAGCC-AGCCGAAGAGGGATAATGCGCAAG-TCGAG-GATC
65 CATGAAACGGA-CGTGCGGGCACTCAGCCGA-CCGAAGAGGCAGAATGCGCAAGCT-G-GTGATC
* * *
121682 GGCCCGGTCCACCTCTGCTTGCTGTCGC
126 GGTCGGGTCC-CC-C--C-TGC-AT-GC
* * * ** *
121710 TCCCGTAGCCATGACCCT-TGATTCGGTTGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAG
1 TGCC--A--CA--ACCCTCAG-TCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAG
* * * * * * * *
121774 CCAACCCACGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAGGTAGAATACGTAAGCCAGG-G
59 CCAACCCATGAAACGGACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAG-CTGGTG
* * * * *
121838 ATCAGCCCGGTCCCCCATGCGTGC
123 ATCGGTCGGGTCCCCCCTGCATGC
* * * * * * *
121862 TGCCACAACCTTCGGTCTGGCTGGGGTTTAGACAT-GAATGAACTCCGTATGCCAAAGTCAACCC
1 TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * *** * * * * * * * * *
121926 ACGAAA-TGAGCATGCGGGTGGTGAGCCGATCGGAGAGGCATAATGAGTAAGCAGGGGATCGGCC
66 ATGAAACGGA-CGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGTGATCGGTC
* * *
121990 CGATCCCCCTCTGCGTGCTGTCGGTCCTAC
130 GGGT-CCCC-C--C-TGC-AT--G-----C
** * * *
122020 TGCCACAACCCTTGGTTCGACTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAACCC
1 TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
* * * ** *
122085 ATGAAAC-GAGCGTACGGGCGCTCAACCGGTCGAAGAGGCAGAATGTGCAA
66 ATGAAACGGA-CGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAA
122135 ACCGAAGATC
Statistics
Matches: 452, Mismatches: 84, Indels: 71
0.74 0.14 0.12
Matches are distributed among these distances:
144 6 0.01
145 77 0.17
146 132 0.29
147 5 0.01
148 3 0.01
150 5 0.01
151 5 0.01
152 6 0.01
153 8 0.02
154 3 0.01
155 1 0.00
157 2 0.00
158 33 0.07
159 160 0.35
160 6 0.01
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (146 bp):
TGCCACAACCCTCAGTCCGACTGGGGCTTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCC
ATGAAACGGACGTGCGGGCACTCAGCCGACCGAAGAGGCAGAATGCGCAAGCTGGTGATCGGTCG
GGTCCCCCCTGCATGC
Found at i:122152 original size:304 final size:304
Alignment explanation
Indices: 121384--122167 Score: 907
Period size: 304 Copynumber: 2.6 Consensus size: 304
121374 ATCAACTTGG
* * *
121384 TCCCCCTCTGCGTGCTATCGATCCTGTTGCCACAACCCTCGG-TCTGGCTGGGGCTTAGACATGG
1 TCCCCCTCTGCGTGCTGTCGATCCT-CTGCCACAACCCTTGGTTC-GGCTGGGGCTTAGACATGG
*
121448 AATGAACTCCCTATGCCTAAGCCAACCCATGAAATGGACGTGCGGGCGCTCAGTCGACCGAAGAG
64 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAGTCGACCGAAGAG
* ** * * * * *
121513 GCAGAATGCGCAAGCTGGTGATCGGTCGGGTCCCCCCTGCATGCTGCCATAACCCTCAGTCCGAC
129 GCAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCATGCGTGCTGCCACAACCCTCAGTCCGAC
* * *
121578 TGGGGTTCAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCATGAAACGAGCGTGTGGGCAC
194 TGGGGTTCAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCAC
* * *
121643 TGAGCCAGCCGAAGAGGGATAATGCGCAAGTCGAGGATCGGCCCGG
259 TGAGCCAGCCGAAGAGGCATAATGAGCAAGTCGAGGATCGGCCCGA
* * * ** * *
121689 TCCACCTCTGCTTGCTGTCGCTCC-CGTAGCCATGACCCTTGATTCGGTTGGGGCTTAGACATGG
1 TCCCCCTCTGCGTGCTGTCGATCCTC-T-GCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGG
* *
121753 AATGAACTCCCTATGCCTAAGCCAACCCACGAAACGGACGTGCGGGCGCTCAGTCGACCGAAAAG
64 AATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAGTCGACCGAAGAG
* * * * * * * * *
121818 GTAGAATACGTAAGCC-AGGGATCAGCCCGGTCCCCCATGCGTGCTGCCACAACCTTCGGTCTGG
129 GCAGAATGCGCAAGCCGA-AGATCGGCCCGGTCCCCCATGCGTGCTGCCACAACCCTCAGTCCGA
* * * **
121882 CTGGGGTTTAGACAT-GAATGAACTCCGTATGCCAAAGTCAACCCACGAAATGAGCATGCGGGTG
193 CTGGGGTTCAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCA
* * * * *
121946 GTGAGCC-GATCGGAGAGGCATAATGAGTAAG-CAGGGGATCGGCCCGA
258 CTGAGCCAG-CCGAAGAGGCATAATGAGCAAGTC-GAGGATCGGCCCGA
* * *
121993 TCCCCCTCTGCGTGCTGTCGGTCCTACTGCCACAACCCTTGGTTCGACTGGGGCTTAGACATTGA
1 TCCCCCTCTGCGTGCTGTCGATCCT-CTGCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGA
* ** **
122058 ATGAACTCCCTATGCCTAAGCCAACCCATGAAAC-GAGCGTACGGGCGCTCAACCGGTCGAAGAG
65 ATGAACTCCCTATGCCTAAGCCAACCCATGAAACGGA-CGTGCGGGCGCTCAGTCGACCGAAGAG
* * * * *
122122 GCAGAATGTGCAAACCGAAGATCGGCCCGGTGCCCCTTACGTGCTG
129 GCAGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCATGCGTGCTG
122168 TCGATCCTAT
Statistics
Matches: 398, Mismatches: 71, Indels: 21
0.81 0.14 0.04
Matches are distributed among these distances:
303 4 0.01
304 218 0.55
305 173 0.43
306 3 0.01
ACGTcount: A:0.23, C:0.30, G:0.28, T:0.19
Consensus pattern (304 bp):
TCCCCCTCTGCGTGCTGTCGATCCTCTGCCACAACCCTTGGTTCGGCTGGGGCTTAGACATGGAA
TGAACTCCCTATGCCTAAGCCAACCCATGAAACGGACGTGCGGGCGCTCAGTCGACCGAAGAGGC
AGAATGCGCAAGCCGAAGATCGGCCCGGTCCCCCATGCGTGCTGCCACAACCCTCAGTCCGACTG
GGGTTCAGACATGGAATGAACTCCGTATGCCAAAGCCAACCCACGAAACGAGCATGCGGGCACTG
AGCCAGCCGAAGAGGCATAATGAGCAAGTCGAGGATCGGCCCGA
Found at i:122158 original size:159 final size:157
Alignment explanation
Indices: 121861--122194 Score: 348
Period size: 159 Copynumber: 2.1 Consensus size: 157
121851 CCCATGCGTG
* * * *
121861 CTGCCACAACCTTCGGTCTGGCTGGGGTTTAGACATGAATGAACTCCGTATGCCAAAGTCAACCC
1 CTGCCACAACCTTCGGTCTGACTGGGGCTTAGACATGAATGAACTCCCTATGCCAAAGCCAACCC
* * * * * * * * * * **
121926 ACGAAATGAGCATGCGGGTGGTGAGCCGATCGGAGAGGCATAATGAGTAAGCAGGGGATCGGCCC
66 ACGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGAGCAAACAGAAGATCGGCCC
* *
121991 GATCCCCCTCTGCGTGCTGTCGGTCCTA
131 GATCCCCCT-TACGTGCTGTCGATCCTA
*
122019 CTGCCACAACCCTT-GGT-TCGACTGGGGCTTAGACATTGAATGAACTCCCTATGCCTAAGCCAA
1 CTGCCACAA-CCTTCGGTCT-GACTGGGGCTTAGACA-TGAATGAACTCCCTATGCCAAAGCCAA
* * * * *
122082 CCCATGAAACGAGCGTACGGGCGCTCAACCGGTCGAAGAGGCAGAATGTGCAAACCGAAGATCGG
63 CCCACGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGAGCAAACAGAAGATCGG
* *
122147 CCCGGTGCCCCTTACGTGCTGTCGATCCTA
128 CCCGATCCCCCTTACGTGCTGTCGATCCTA
* * * *
122177 TTACCGCAACCCTCGGTC
1 CTGCCACAACCTTCGGTC
122195 CAGTTTGATC
Statistics
Matches: 141, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
157 4 0.03
158 51 0.36
159 86 0.61
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (157 bp):
CTGCCACAACCTTCGGTCTGACTGGGGCTTAGACATGAATGAACTCCCTATGCCAAAGCCAACCC
ACGAAACGAGCATACGGGCGCTCAACCGATCGAAGAGGCAGAATGAGCAAACAGAAGATCGGCCC
GATCCCCCTTACGTGCTGTCGATCCTA
Found at i:123453 original size:157 final size:157
Alignment explanation
Indices: 122963--123462 Score: 442
Period size: 158 Copynumber: 3.2 Consensus size: 157
122953 AACTCTGTAC
122963 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
* * ** *
123028 CGGTCA-GAGAGGCAGAATGCGTAAGCCGGGGATTGACCTGATCCACCCTACGTGCTATCGATCC
66 CGG-CAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCC-CCCTGTGTGCTATCAATCC
* ** * *
123092 TACTACCATAACCCTTGATCTGGTCTGAT
129 TACTGCCGCAACCCTCGATCCGGTCTGAT
* * * * * * * * *
123121 CTTACAC-TGGGAATGAAGTCCGTATGCATAAGTCAACCCACGAAACAAGCGTGCGAGCGCTGAG
1 CTTAGACAT-GGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAG
* ** * * * *
123185 CCGGC-GAAAAGGCATG-ATGCACAAGTCGGGGATCGGCCCGATCCCCCCCTGTGT-CT-TGTAG
65 CCGGCAGGAAAGGCA-GAATGCGTAAGCCGGGGATCGACCTGAT--CCCCCTGTGTGCTAT-CA-
* *** * * * *
123246 GTCCCGTTGCCGCAACCATCGGTTCGGT-TGGGGT
125 ATCCTACTGCCGCAACCCTCGATCCGGTCT--GAT
* * *
123280 -TTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCATGAAACGAGTGTGCGGGCACTCAGC
1 CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
* * * *
123344 TGGCAGGATAGGCAGAATGCGTAAGCCAGGGATCGACCTGGTCCCCCTGTGTGCTATCAATCCTA
66 CGGCAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCCCTGTGTGCTATCAATCCTA
*
123409 CTGTCGCAACCCTCGATCCGGTCTGAT
131 CTGCCGCAACCCTCGATCCGGTCTGAT
**
123436 CTTAGAC-TGGGAATGAACAACATATGC
1 CTTAGACAT-GGAATGAACTCCATATGC
123463 TTAGATTGGG
Statistics
Matches: 257, Mismatches: 68, Indels: 35
0.71 0.19 0.10
Matches are distributed among these distances:
156 4 0.02
157 82 0.32
158 139 0.54
159 32 0.12
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (157 bp):
CTTAGACATGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACAAGTGTGCGGGCACTCAGC
CGGCAGGAAAGGCAGAATGCGTAAGCCGGGGATCGACCTGATCCCCCTGTGTGCTATCAATCCTA
CTGCCGCAACCCTCGATCCGGTCTGAT
Found at i:123842 original size:26 final size:26
Alignment explanation
Indices: 123804--123856 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
123794 TTGGGTCGAT
123804 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
123830 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCATATG
123856 C
1 C
123857 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:123846 original size:184 final size:191
Alignment explanation
Indices: 123645--124060 Score: 485
Period size: 184 Copynumber: 2.2 Consensus size: 191
123635 TCCGACTGGG
* *
123645 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCTCTTAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* * * * * *
123710 CC-GATCGGAGAGGCAGAATGCGCAAGCTGGGGATCAGA-TCGGTCCCCCCTAC-G-TGCT-A-C
66 CCAG-CCAGAGAGGCAAAATGCACAAGCCGGGGATC-GACCCGGTCCCCCCTACGGCTGCTGATC
* * *** *
123769 C-G-A-TCCTGCTGCTGTAACCCTC-GTTTTGGGTC-GATCTTAGACTGGGAATGAACTCCATAT
129 CTGCAGTCCTGCTACCGTAACCCTCAG--TCCAGTCTGATCTTAGACTAGGAATGAACTCCATAT
** *
123829 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTGCGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
* *
123894 CCAGCCAGTGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTCCGTGCTGCTGATCC
66 CCAGCCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACG-GCTGCTGATCC
*
123959 TGCTACTGGTCCTGCTACCGTAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTA
130 TGC-A---GTCCTGCTACCGTAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATA
124024 T
191 T
*
124025 GCTTAGACATGGAATGAACTCCGCATGCCTAAGCCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCA
124061 GCCTACGGAA
Statistics
Matches: 195, Mismatches: 21, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
183 2 0.01
184 99 0.51
185 1 0.01
186 1 0.01
187 4 0.02
188 1 0.01
189 2 0.01
190 1 0.01
192 1 0.01
195 4 0.02
196 78 0.40
197 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.25, T:0.21
Consensus pattern (191 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGAGCACTCAG
CCAGCCAGAGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTACGGCTGCTGATCCT
GCAGTCCTGCTACCGTAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCATAT
Found at i:124038 original size:26 final size:26
Alignment explanation
Indices: 124000--124052 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
123990 CCAGTCTGAT
*
124000 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
124026 CTTAGAC-ATGGAATGAACTCCGCATG
1 CTTAGACTA-GGAATGAACTCCGCATG
124052 C
1 C
124053 CTAAGCCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:124537 original size:26 final size:26
Alignment explanation
Indices: 124496--124548 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
124486 CTGGTTTGAT
124496 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
124522 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCATATG
124548 C
1 C
124549 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.88
27 3 0.12
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:124914 original size:26 final size:26
Alignment explanation
Indices: 124876--124928 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
124866 CTGATCTGAT
124876 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
124902 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
124928 C
1 C
124929 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:125427 original size:26 final size:26
Alignment explanation
Indices: 125377--125429 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
125367 CCGGTCCGAT
**
125377 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
125403 CTTAGACTAGGG-ATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
125429 C
1 C
125430 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:125686 original size:881 final size:875
Alignment explanation
Indices: 123829--125688 Score: 2116
Period size: 881 Copynumber: 2.1 Consensus size: 875
123819 AACTCCATAT
123829 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGC-GTGCGGGCACTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-CAGTGCGGGCACTCA
* * * * *
123893 GCC-AGCCAGTGAGGCAAAATGCACAAGCCGGGGATCGACCCGGTCCCCCCTCCGTGCTGCTGAT
65 GCCGA-CCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCACGGTCCCCCCTCCGTGCTGCTGAT
* **
123957 CCTGCTACTGGTCCTGCTACCGTAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCG
129 CCTGCTACTGGTCCTACTACCCCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCG
* * * * ** **
124022 TATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAGCCTACGGAATGAGCATGCGGGCGTT
194 TATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATGCAAGCACT
* * * * * *
124087 CAGTCGGTCGGAAAAGGCATAATGCGTAAGCCAGGGATTGACCCTGTACCCCTCTACATGCTGTC
259 CAGCCGATCGGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCTGTACCCCTCTACATGCTATC
* * * * * * *
124152 AATCCTGGTACCGCAACCCTTGGTCTGGCCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
324 AATCCTGCTACCGCAACCCTCGATCCGACCCAAACTTAGACTGGGAATGAAATCCGTATGCCTAA
* * * * *** *
124217 GTCAACCCATGAAACGAGCATGCAGGTGCTGAGCCGATCGGAGAGGCATAATGTGTAAGTCGAGG
389 GTCAACCCACGAAACGAGCATGCAGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGG
* * **
124282 ATCGACCCAATCCCCTTCAGTGTGCTACCGGTCCCGCTGCCACAACCCTCAGCCCGACTGGGGCT
454 ATCAACCCAATCCCCCTCAGTGTGCTACCAATCCCGCTGCCACAACCCTCAGCCCGACTGGGGCT
* *
124347 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAATGGGGTGCTCAACCGATCGAAG
519 TAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGGTGCTCAACAGATCGAAG
* * * * *
124412 AGGCAGAATGCGCAAGCCGGGGATCGACCCGGTCCCCCCTGAATGCTGTCGATCCTATTGCCACA
584 AGGCAGAATGCGCAAGCCGAGAATCGACCCGATCCCCCCTGAATGCTATCGATCCTACTGCCACA
* * * **
124477 ACCTTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTC
649 ACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTC
* * * *
124542 CGTATGCCCAAGTCAACCTACGAAACGAGCTTGTGGGCATTCAACCGACCGAAAAAGCCGATCGG
714 CGTATGCCCAAGTCAACCGACGAAACGAGC-TGTGGGCACTCAACCGACCGAAAAAGCCAATCAG
* * * * *
124607 AGAGGCATAATGCGCAAGCTAGGGATCAGCTCGATCCCCCTCTGCGTGTTGTCGATCCCGCTGCC
778 AGAGGCATAATGCGCAAGCGAGGGATCAGCCCGATCCCCCTCTGCATGCTATCGATCCCGCTGCC
**
124672 AGTCCTACTACCACAACCCTCGGTCTGACTTTG
843 AGTCCTACTACCACAACCCTCGGTCTGACTAGG
* ** *
124705 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAATGAGCA-CACGGGCGCTCA
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGA-CAGTGCGGGCACTCA
* * * * * * **
124769 GCCGGCCGGAGGGGCAAAATGTGCAAGCCAGGGATCGGTATGGTCCCCCCTGTGTGCTGAC-GAT
65 GCCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCACGGTCCCCCCTCCGTGCTG-CTGAT
* * *
124833 CCTGC-AGCTGGTCCTACTACCCCAACCCTCGGT-CTGATCTGATCTTAGACTGGGAATGAACTC
129 CCTGCTA-CTGGTCCTACTACCCCAACCCTCAGTCCAG-TCTGATCTTAGACTAGGAATGAACTC
* *
124896 CGTATGCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCATGCAAGCA
192 CGTATGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATGCAAGCA
* * * * *
124961 CTCAGCCGATCGG-AGAGGCAGAATGCGCAAGTCGGGGATCGA-CCTG-ATCCCC-CATGCGTGC
257 CTCAGCCGATCGGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCTGTA-CCCCTC-TACATGC
* * * ** *
125022 TATCGATCCTGCTACCGTC-ACCCTCGATCCGATCTAAACTTAGACTGGGAATGAAATTTGTTTG
320 TATCAATCCTGCTACCG-CAACCCTCGATCCGACCCAAACTTAGACTGGGAATGAAATCCGTATG
* * *
125086 CCTAAGTCAACTCACGAAACGAGCATGCGGGCGTTGAGCCGACCGAAGAGGCATAATGCACAAGC
384 CCTAAGTCAACCCACGAAACGAGCATGCAGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGC
* * * * * **
125151 CGGGGATCAACCCGATCCCCCTCTA-TGTGCTATCAATCTCGCTGCCACAACCCTC-GATCCGGT
449 CGAGGATCAACCCAATCCCCCTC-AGTGTGCTACCAATCCCGCTGCCACAACCCTCAG-CCCGAC
* *
125214 TGGGGCTTAGACATGGATTGAACTCCCTATGCCTAAGCCAACCCACGAAACGGGCGTACGGGGGC
512 TGGGGCTTAGACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGG-GT------GC
** * * * ** * **
125279 TCAGTTAG-TCGGAGAGGTAGAATGCGTAAGCCGAGAATCGGGCCGATCCCTCCTGCGTGCTATC
570 TCA-ACAGATCGAAGAGGCAGAATGCGCAAGCCGAGAATCGACCCGATCCCCCCTGAATGCTATC
* ***
125343 GATCCTGCTG-CAGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCTTA
634 GATCCTACTGCCA-CAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTA
* * ** *
125407 GACTAGGGATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAG-TGTACGGGTGCTCAACTGA
698 GACTAGGGATGAACTCCGTATGCCCAAGTCAACCGACGAAACGAGCTGT--GGGCACTCAACCGA
* *** * *
125471 TCGAAGGGGCCAATCAGAGAGGCATAATGTGCAAGCCGA-GGATCAGCCCGGTCCCCCTCTGCAT
761 CCGAAAAAGCCAATCAGAGAGGCATAATGCGCAAG-CGAGGGATCAGCCCGATCCCCCTCTGCAT
** * *
125535 GCTATCGATCCCGCTGCTGGTCCTGCTACCACAACCCTCGGTCTGGCTAGG
825 GCTATCGATCCCGCTGCCAGTCCTACTACCACAACCCTCGGTCTGACTAGG
* * * *
125586 GCTTAGACATGGAATTAACTCTGTATGCCTAAGCCAACCCATGAAACGATAGTGTGGGCACTCAG
1 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACAGTGCGGGCACTCAG
* * * *
125651 CCGATCGGAGAGGCAGAATGCGTAAGCTGGGGATCGGC
66 CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGC
125689 CCGATCCTCC
Statistics
Matches: 811, Mismatches: 150, Indels: 41
0.81 0.15 0.04
Matches are distributed among these distances:
873 3 0.00
874 214 0.26
875 30 0.04
876 225 0.28
877 1 0.00
879 3 0.00
880 3 0.00
881 329 0.41
882 3 0.00
ACGTcount: A:0.25, C:0.29, G:0.26, T:0.20
Consensus pattern (875 bp):
GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGACAGTGCGGGCACTCAG
CCGACCGGAGAGGCAAAATGCGCAAGCCGGGGATCGGCACGGTCCCCCCTCCGTGCTGCTGATCC
TGCTACTGGTCCTACTACCCCAACCCTCAGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTA
TGCTTAGACATGGAATGAACTCCGCATGCCTAAGCCAACCCACGAAACGAGCATGCAAGCACTCA
GCCGATCGGAAAAGGCAGAATGCGCAAGCCAGGGATCGACCCTGTACCCCTCTACATGCTATCAA
TCCTGCTACCGCAACCCTCGATCCGACCCAAACTTAGACTGGGAATGAAATCCGTATGCCTAAGT
CAACCCACGAAACGAGCATGCAGGCGCTGAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGAT
CAACCCAATCCCCCTCAGTGTGCTACCAATCCCGCTGCCACAACCCTCAGCCCGACTGGGGCTTA
GACATGGAATGAACTCCCTATGCCTAAGCCAACCCACAAAACGGGGTGCTCAACAGATCGAAGAG
GCAGAATGCGCAAGCCGAGAATCGACCCGATCCCCCCTGAATGCTATCGATCCTACTGCCACAAC
CCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGGATGAACTCCG
TATGCCCAAGTCAACCGACGAAACGAGCTGTGGGCACTCAACCGACCGAAAAAGCCAATCAGAGA
GGCATAATGCGCAAGCGAGGGATCAGCCCGATCCCCCTCTGCATGCTATCGATCCCGCTGCCAGT
CCTACTACCACAACCCTCGGTCTGACTAGG
Done.