genome.fa.s653.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168478.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_77, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119140

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219--464	80	3.1	80	89	2	361	29	13	13	42	1.83
794--953	80	2.0	80	90	0	248	28	16	14	40	1.88
1536--1584	21	2.3	21	85	0	62	44	4	2	48	1.33
2294--2342	17	2.9	18	91	8	77	34	0	0	65	0.93
2957--2991	18	1.9	18	88	0	52	57	0	0	42	0.99
3638--3680	19	2.2	20	83	4	52	53	2	2	41	1.26
3840--3883	17	2.5	17	77	3	52	50	0	2	47	1.13
7578--7616	19	2.1	19	90	0	60	12	23	2	61	1.43
11889--12307	94	4.3	96	87	5	574	28	11	25	34	1.91
12274--12340	33	2.0	33	100	0	134	23	11	20	43	1.85
11890--12307	47	8.6	48	83	6	513	28	11	25	34	1.91
12230--12387	81	2.0	79	92	2	262	25	12	23	39	1.89
12276--12357	33	2.5	33	91	2	128	23	12	23	41	1.87
12300--12406	47	2.2	48	86	3	162	23	16	24	35	1.95
14318--14698	192	2.0	192	88	3	570	36	11	15	36	1.83
15482--15531	18	2.9	17	88	11	75	34	0	0	66	0.92
16144--16178	18	1.9	18	88	0	52	57	0	0	42	0.99
16237--16322	44	2.0	44	95	0	154	52	10	5	31	1.59
16869--16911	19	2.2	20	83	4	52	53	2	2	41	1.26
23512--23553	19	2.1	20	86	8	59	40	0	0	59	0.97
23964--24019	22	2.5	23	78	18	73	41	14	8	35	1.77
24605--24634	16	1.9	16	93	6	53	53	0	6	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35447--35498	26	2.0	26	88	0	77	25	7	25	42	1.81
35900--35957	21	2.8	21	89	0	89	31	24	29	15	1.95
39786--39963	85	2.0	88	84	4	236	38	10	12	38	1.77
41840--42587	144	5.2	144	90	2	1040	35	15	21	27	1.94
41859--42229	72	5.2	71	62	16	170	33	17	20	28	1.95
45026--45068	17	2.5	17	80	0	59	51	0	0	48	1.00
46985--47033	21	2.3	20	76	10	53	30	0	0	69	0.89
47560--47596	19	1.9	19	88	0	56	51	0	10	37	1.37
47585--47676	41	2.3	41	81	5	98	52	7	6	33	1.56
48662--48708	19	2.5	19	79	6	60	48	0	0	51	1.00
50300--50400	47	2.2	46	83	5	123	28	14	8	47	1.75
50358--50505	60	2.5	60	84	4	187	35	12	8	43	1.73
50373--50628	128	2.0	126	83	6	320	36	12	5	45	1.66
50430--50568	68	2.0	70	87	2	201	37	12	3	46	1.59
50500--50648	58	2.6	58	83	4	201	40	12	3	44	1.58
53152--53198	17	2.8	16	84	9	58	0	14	4	80	0.85
53261--53499	45	5.4	43	72	12	164	47	21	11	19	1.81
53394--53528	44	3.1	44	73	16	145	46	18	12	22	1.82
53269--53655	86	4.5	85	82	4	341	45	19	12	21	1.84
53261--53655	42	9.1	43	70	17	187	46	19	12	21	1.83
58204--58239	13	2.8	13	91	0	54	11	25	36	27	1.90
59116--59146	13	2.4	13	94	0	53	0	3	16	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59145--59186	18	2.3	18	87	0	57	40	0	0	59	0.97
59145--59192	21	2.4	21	86	10	66	43	0	0	56	0.99
59145--59191	18	2.6	18	80	10	51	42	0	0	57	0.98
59593--60724	45	22.9	52	83	10	1211	37	23	13	25	1.91
60333--60719	96	4.0	96	87	5	541	36	25	12	25	1.91
59610--60727	99	11.3	100	84	9	1173	37	24	13	25	1.91
62301--62544	122	2.0	122	90	0	389	37	19	21	21	1.95
70247--70300	23	2.4	22	81	9	63	5	1	11	81	0.93
70287--70320	17	1.9	17	94	5	59	5	8	2	82	0.93
70274--70298	7	3.6	7	100	0	50	0	0	12	88	0.53
72608--72642	18	1.9	18	88	0	52	57	0	0	42	0.99
72656--72696	3	13.7	3	100	0	82	65	0	0	34	0.93
72853--72882	13	2.3	13	94	0	51	13	26	10	50	1.73
73319--73361	19	2.2	20	87	4	61	55	2	0	41	1.12
73919--73955	14	2.6	14	82	0	56	62	0	0	37	0.96
74990--75024	18	1.9	18	88	0	52	57	0	0	42	0.99
82866--82894	14	2.1	14	93	6	51	72	0	0	27	0.85
83895--83928	2	17.0	2	87	0	50	50	5	0	44	1.26
88315--88495	87	2.1	88	86	2	247	40	8	11	39	1.72
89444--89480	3	12.3	3	100	0	74	32	0	0	67	0.91
93326--93641	144	2.2	144	88	0	461	35	14	22	27	1.93
95251--95305	23	2.8	18	76	23	65	30	18	5	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95888--95942	17	3.2	17	82	5	74	30	0	0	69	0.89
95888--95931	18	2.4	18	88	3	61	31	0	0	68	0.90
96565--96604	19	2.2	18	86	8	55	62	0	0	37	0.95
97446--97480	19	1.9	19	88	11	56	54	0	0	45	0.99
97960--97991	16	1.9	17	93	6	57	59	6	6	28	1.46
99010--99047	19	2.0	20	84	5	51	52	2	2	42	1.29
99221--99270	24	2.2	24	82	10	61	42	4	0	54	1.19
100326--100359	3	11.3	3	100	0	68	67	0	0	32	0.91
100365--100400	3	12.0	3	100	0	72	33	0	0	66	0.92
105907--105944	20	2.0	19	85	10	51	65	15	2	15	1.38
107109--107437	161	2.0	162	95	0	588	49	10	8	31	1.68
108247--108366	63	1.9	63	84	8	163	38	9	8	44	1.67
110388--110422	17	2.0	18	88	5	54	51	0	0	48	1.00
115858--116001	72	2.0	72	86	2	200	36	12	27	23	1.91
117772--117824	23	2.2	24	81	18	67	58	0	1	39	1.09
118658--118711	24	2.2	24	83	9	74	51	1	1	44	1.22
118665--118703	21	1.9	20	89	5	60	58	2	2	35	1.25

Tables:   1

The End!