Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 110 of 127
Found at i:20523155 original size:21 final size:21
Alignment explanation
Indices: 20523129--20523193 Score: 87
Period size: 21 Copynumber: 3.1 Consensus size: 21
20523119 TTTTTTATCT
20523129 AAATTCATACTCTCTCTCTAA
1 AAATTCATACTCTCTCTCTAA
* *
20523150 AAATTCATACTCTTTTTCTAA
1 AAATTCATACTCTCTCTCTAA
*
20523171 AAATTCATTA-TTTCTCTCTAA
1 AAATTCA-TACTCTCTCTCTAA
20523192 AA
1 AA
20523194 TCAAATCAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
21 36 0.95
22 2 0.05
ACGTcount: A:0.35, C:0.22, G:0.00, T:0.43
Consensus pattern (21 bp):
AAATTCATACTCTCTCTCTAA
Found at i:20524068 original size:19 final size:19
Alignment explanation
Indices: 20524033--20524069 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
20524023 AATTGTTTGG
*
20524033 TTTTAGAGAGAGAATGAAT
1 TTTTAGAGAAAGAATGAAT
*
20524052 TTTTAGAGAAAGTATGAA
1 TTTTAGAGAAAGAATGAA
20524070 GTCAAATGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.24, T:0.32
Consensus pattern (19 bp):
TTTTAGAGAAAGAATGAAT
Found at i:20525237 original size:2 final size:2
Alignment explanation
Indices: 20525230--20525262 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
20525220 TAAAAAGCTA
20525230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20525263 AAGCCAACAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20525703 original size:13 final size:14
Alignment explanation
Indices: 20525685--20525721 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
20525675 TAATTAAATT
20525685 AAAATTAAAATA-A
1 AAAATTAAAATAGA
20525698 AAAATTAAAATAGA
1 AAAATTAAAATAGA
*
20525712 TAAATTAAAA
1 AAAATTAAAA
20525722 GGTCTTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (14 bp):
AAAATTAAAATAGA
Found at i:20527511 original size:22 final size:21
Alignment explanation
Indices: 20527464--20527520 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
20527454 GATAAACCCG
*
20527464 TTTTATTTTTTATTCTGATAT
1 TTTTATTTTTTGTTCTGATAT
*
20527485 TTTTATTTTTTGTATCTTAT-T
1 TTTTATTTTTTGT-TCTGATAT
*
20527506 TATTTATTTATTGTT
1 T-TTTATTTTTTGTT
20527521 ACTATTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 15 0.48
22 16 0.52
ACGTcount: A:0.18, C:0.04, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTATTTTTTGTTCTGATAT
Found at i:20527571 original size:3 final size:3
Alignment explanation
Indices: 20527563--20527641 Score: 56
Period size: 3 Copynumber: 25.7 Consensus size: 3
20527553 TATACATACT
*
20527563 TTA TTA TTA TTTA TCTA TTA TTA TTA TTA TTTA TCTA TTAA TTA ATA
1 TTA TTA TTA -TTA T-TA TTA TTA TTA TTA -TTA T-TA TT-A TTA TTA
** *
20527610 -TA TTA TCC TTA TTA TTA TT- TTT TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
20527642 GTTTATTTTA
Statistics
Matches: 62, Mismatches: 6, Indels: 16
0.74 0.07 0.19
Matches are distributed among these distances:
2 6 0.10
3 41 0.66
4 15 0.24
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:20527596 original size:41 final size:38
Alignment explanation
Indices: 20527522--20527628 Score: 98
Period size: 38 Copynumber: 2.8 Consensus size: 38
20527512 TTTATTGTTA
* *
20527522 CTATTTATTAATATA-TAT-A-TA-TATTAGTATTTAT
1 CTATTAATTAATATATTATCATTATTATTATTATTTAT
* *
20527556 ACATACTTTATTATTAT-TTATCTATTATTATTATTATTTAT
1 -C-TA-TTAATTAATATATTATC-ATTATTATTATTATTTAT
*
20527597 CTATTAATTAATATATTATCCTTATTATTATT
1 CTATTAATTAATATATTATCATTATTATTATT
20527629 TTTTTATTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
35 1 0.02
36 2 0.03
37 13 0.22
38 20 0.34
39 8 0.14
40 3 0.05
41 12 0.20
ACGTcount: A:0.35, C:0.07, G:0.01, T:0.58
Consensus pattern (38 bp):
CTATTAATTAATATATTATCATTATTATTATTATTTAT
Found at i:20527597 original size:20 final size:20
Alignment explanation
Indices: 20527505--20527628 Score: 85
Period size: 20 Copynumber: 6.1 Consensus size: 20
20527495 TGTATCTTAT
* * *
20527505 TTATTTATTTATTGTTACTA
1 TTATTTATCTATTATTATTA
* *
20527525 TTTATTAATATATATATATATTA
1 -TTATTTATCTAT-TAT-TATTA
* *
20527548 GTATTTATACATACT-TTATTA
1 TTATTTAT-C-TATTATTATTA
20527569 TTATTTATCTATTATTATTA
1 TTATTTATCTATTATTATTA
20527589 TTATTTATCTATTA--ATTA
1 TTATTTATCTATTATTATTA
* *
20527607 ATATATTATC-CTTATTATTA
1 TTAT-TTATCTATTATTATTA
20527627 TT
1 TT
20527629 TTTTTATTTT
Statistics
Matches: 82, Mismatches: 13, Indels: 17
0.73 0.12 0.15
Matches are distributed among these distances:
18 10 0.12
19 8 0.10
20 26 0.32
21 22 0.27
22 9 0.11
23 5 0.06
24 2 0.02
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.60
Consensus pattern (20 bp):
TTATTTATCTATTATTATTA
Found at i:20527662 original size:12 final size:12
Alignment explanation
Indices: 20527618--20527662 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
20527608 TATATTATCC
20527618 TTATTATTATTTTT
1 TTATT-TTA-TTTT
*
20527632 TTATTTTATTGT
1 TTATTTTATTTT
20527644 TTATTTTATTTT
1 TTATTTTATTTT
*
20527656 TTCTTTT
1 TTATTTT
20527663 CTTCTTTCCT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 20 0.71
13 3 0.11
14 5 0.18
ACGTcount: A:0.16, C:0.02, G:0.02, T:0.80
Consensus pattern (12 bp):
TTATTTTATTTT
Found at i:20528224 original size:19 final size:20
Alignment explanation
Indices: 20528180--20528224 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
20528170 TTTGTAGTTT
*
20528180 AGAAA-GAAGGGAGAGGAAA
1 AGAAAGGAAGAGAGAGGAAA
20528199 AGAAAGGAAGAGAGA-GAAA
1 AGAAAGGAAGAGAGAGGAAA
*
20528218 GGAAAGG
1 AGAAAGG
20528225 CCCAATTTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (20 bp):
AGAAAGGAAGAGAGAGGAAA
Found at i:20528489 original size:3 final size:3
Alignment explanation
Indices: 20528483--20528564 Score: 64
Period size: 3 Copynumber: 26.7 Consensus size: 3
20528473 GTTTTTTTTT
* *
20528483 TTA TTA TTA TTTA TTA TT- TTT TTCA TTTA TTA TT- TT- TTA TTT TTA
1 TTA TTA TTA -TTA TTA TTA TTA TT-A -TTA TTA TTA TTA TTA TTA TTA
20528528 TT- TTA TTA TTA TTA TTTA TTTA TTTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA -TTA -TTA -TTA TTA TTA TTA TT
20528565 TATTGATTAG
Statistics
Matches: 69, Mismatches: 3, Indels: 14
0.80 0.03 0.16
Matches are distributed among these distances:
2 8 0.12
3 44 0.64
4 15 0.22
5 2 0.03
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.74
Consensus pattern (3 bp):
TTA
Found at i:20528496 original size:7 final size:7
Alignment explanation
Indices: 20528486--20528568 Score: 91
Period size: 7 Copynumber: 11.7 Consensus size: 7
20528476 TTTTTTTTTA
20528486 TTATTAT
1 TTATTAT
20528493 TTATTATT
1 TTATTA-T
*
20528501 TTTTTCAT
1 TTATT-AT
20528509 TTATTAT
1 TTATTAT
*
20528516 TTTTTAT
1 TTATTAT
20528523 TT-TTATT
1 TTATTA-T
20528530 TTATTA-
1 TTATTAT
20528536 TTATTAT
1 TTATTAT
20528543 TTATTTAT
1 TTA-TTAT
20528551 TTATTA-
1 TTATTAT
20528557 TTATTAT
1 TTATTAT
20528564 TTATT
1 TTATT
20528569 GATTAGATTA
Statistics
Matches: 66, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
6 15 0.23
7 30 0.45
8 20 0.30
9 1 0.02
ACGTcount: A:0.24, C:0.01, G:0.00, T:0.75
Consensus pattern (7 bp):
TTATTAT
Found at i:20528504 original size:21 final size:21
Alignment explanation
Indices: 20528478--20528565 Score: 110
Period size: 21 Copynumber: 4.1 Consensus size: 21
20528468 CCTAGGTTTT
20528478 TTTTTTTA-TTATTATTTATTA
1 TTTTTTTATTTATTA-TTATTA
20528499 TTTTTTTCATTTATTATT-TT-
1 TTTTTTT-ATTTATTATTATTA
20528519 TTATTTTTATTTTATTATTATTA
1 TT-TTTTTA-TTTATTATTATTA
*
20528542 TTTATTTATTTATTATTATTA
1 TTTTTTTATTTATTATTATTA
20528563 TTT
1 TTT
20528566 ATTGATTAGA
Statistics
Matches: 60, Mismatches: 1, Indels: 12
0.82 0.01 0.16
Matches are distributed among these distances:
20 3 0.05
21 39 0.65
22 10 0.17
23 8 0.13
ACGTcount: A:0.23, C:0.01, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTTATTTATTATTATTA
Found at i:20528526 original size:24 final size:23
Alignment explanation
Indices: 20528476--20528565 Score: 110
Period size: 24 Copynumber: 3.8 Consensus size: 23
20528466 TCCCTAGGTT
*
20528476 TTTTTTTTTATTATTATTTATTA
1 TTTTTTTTTATTATTATTTTTTA
*
20528499 -TTTTTTTCATTTATTATTTTTTA
1 TTTTTTTTTA-TTATTATTTTTTA
*
20528522 TTTTTATTTTATTATTATTATTTA
1 TTTTT-TTTTATTATTATTTTTTA
*
20528546 TTTATTTATTATTATTATTT
1 TTT-TTTTTTATTATTATTT
20528566 ATTGATTAGA
Statistics
Matches: 57, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
22 8 0.14
23 12 0.21
24 31 0.54
25 6 0.11
ACGTcount: A:0.22, C:0.01, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTTTTTTATTATTATTTTTTA
Found at i:20528610 original size:6 final size:6
Alignment explanation
Indices: 20528594--20528644 Score: 54
Period size: 6 Copynumber: 8.7 Consensus size: 6
20528584 GTTTAACACA
*
20528594 TTTTAT TTTT-T TATTT-T TCTTTAT TTTTAT TTTCAT TTTTA- TTTTAT
1 TTTTAT TTTTAT T-TTTAT T-TTTAT TTTTAT TTTTAT TTTTAT TTTTAT
20528641 TTTT
1 TTTT
20528645 TTAATTTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
5 7 0.18
6 30 0.77
7 2 0.05
ACGTcount: A:0.14, C:0.04, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:20528626 original size:23 final size:24
Alignment explanation
Indices: 20528594--20528644 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
20528584 GTTTAACACA
*
20528594 TTTTATTTTTTTATTTTT-CTTTAT
1 TTTTA-TTTTTCATTTTTACTTTAT
*
20528618 TTTTA-TTTTCATTTTTATTTTAT
1 TTTTATTTTTCATTTTTACTTTAT
20528641 TTTT
1 TTTT
20528645 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 10 0.42
23 9 0.38
24 5 0.21
ACGTcount: A:0.14, C:0.04, G:0.00, T:0.82
Consensus pattern (24 bp):
TTTTATTTTTCATTTTTACTTTAT
Found at i:20528633 original size:12 final size:11
Alignment explanation
Indices: 20528602--20528644 Score: 61
Period size: 12 Copynumber: 3.9 Consensus size: 11
20528592 CATTTTATTT
20528602 TTTTATTTTT-
1 TTTTATTTTTA
*
20528612 CTTTATTTTTA
1 TTTTATTTTTA
20528623 TTTTCATTTTTA
1 TTTT-ATTTTTA
20528635 TTTTATTTTT
1 TTTTATTTTT
20528645 TTAATTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
10 9 0.31
11 9 0.31
12 11 0.38
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:20528776 original size:60 final size:61
Alignment explanation
Indices: 20528673--20529136 Score: 322
Period size: 66 Copynumber: 7.7 Consensus size: 61
20528663 AATAAAATTC
* * *
20528673 AAAAAAATATATTTTTAAAGGGAAAGATGAAAGTATCAA-TTTTCCTTGAAAATATGTTTTCT
1 AAAAAAATATATTTTT-AAGGAAAAG-TTAAAGTATCAATTTTTCCTTGAAAATAAGTTTTCT
*
20528735 AAAAAAAAATATTTTTAAGGAAAAGTT-AAGTATCAATTTTT-CTTGAAAATAAGTTTTCT
1 AAAAAAATATATTTTTAAGGAAAAGTTAAAGTATCAATTTTTCCTTGAAAATAAGTTTTCT
*
20528794 AAAAAAGATATATTTTTGAA-GAAAAGTTGAAAGTATCAATTTTTTTTTCTTGAAAATAAGTTTT
1 AAAAAA-ATATATTTTT-AAGGAAAAGTT-AAAGTATCAA---TTTTTCCTTGAAAATAAGTTTT
20528858 CT
60 CT
* * * *
20528860 -AAAAAATATATTTTTGAGAAAAAGTTGAAAGTATCAA-TTTTCCTTGGAAATAAGCTTTCT
1 AAAAAAATATATTTTTAAGGAAAAGTT-AAAGTATCAATTTTTCCTTGAAAATAAGTTTTCT
* * *
20528920 --AAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTATCAATTTTCCTTGAAAATAAGCT
1 AAAAAAATATATTTTTAAGGAAAAGTT-AAAGTATC-A---AT---TTTTCCTTGAAAATAAGTT
20528982 TTCT
58 TTCT
* * * *
20528986 --AAAAA-ATATTTTT-GGGAAAAAGTTGAGAGTATCAA--------TAAAAATAAATTTTC-
1 AAAAAAATATATTTTTAAGG-AAAAGTT-AAAGTATCAATTTTTCCTTGAAAATAAGTTTTCT
* * *
20529036 --AAAAATAGATTTTTTAGGAAAAGTTGAAAGTATCAA-TTTTCCTTGAAATTAAAG-TTTCT
1 AAAAAAATATATTTTTAAGGAAAAGTT-AAAGTATCAATTTTTCCTTGAAAAT-AAGTTTTCT
* * *
20529095 --AAAAA-ATATTTTGAA-AAAAAGTTAAAAGTATGAATTTTTCCT
1 AAAAAAATATATTTTTAAGGAAAAGTT-AAAGTATCAATTTTTCCT
20529137 GCACAAAAGC
Statistics
Matches: 342, Mismatches: 29, Indels: 66
0.78 0.07 0.15
Matches are distributed among these distances:
50 5 0.01
51 36 0.11
52 2 0.01
57 16 0.05
58 51 0.15
59 45 0.13
60 42 0.12
61 10 0.03
62 26 0.08
63 1 0.00
64 28 0.08
65 12 0.04
66 68 0.20
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (61 bp):
AAAAAAATATATTTTTAAGGAAAAGTTAAAGTATCAATTTTTCCTTGAAAATAAGTTTTCT
Found at i:20528911 original size:126 final size:124
Alignment explanation
Indices: 20528673--20529132 Score: 418
Period size: 126 Copynumber: 3.8 Consensus size: 124
20528663 AATAAAATTC
* * * *
20528673 AAAAAAATATATTTTTAAAGGGAAAGATGAAAGTATCAA----TTTTCCTTGAAAATATGTTTTC
1 AAAAAAATATATTTTTGAA-GAAAAGTTGAAAGTATCAATTTTTTTTCCTTGAAAATAAGTTTTC
* * * *
20528734 TAAAAAAAAATATTTTTAAGGAAAAGTT--AAGTATCAATTTTTCTTGAAAATAAGTTTTCT
65 T--AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
*
20528794 AAAAAAGATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTTCTTGAAAATAAGTTTTC
1 AAAAAA-ATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTCCTTGAAAATAAGTTTTC
*
20528859 TAAAAAATATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATAAGCTTTCT
65 TAAAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
*
20528920 --AAAAA-ATATTTTTG-AGAAAAAGTTGAAAGTATCAATTTATCAATTTTCCTTGAAAATAAGC
1 AAAAAAATATATTTTTGAAG-AAAAGTTGAAAGTATCAATTT-T---TTTTCCTTGAAAATAAGT
* * * *
20528981 TTTCT-AAAAAATATTTTTGGGAAAAAGTTGAGAGTATCAA-------TAAAAATAA-ATTT-T
61 TTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
* * * * *
20529035 -CAAAAATAGATTTTTTAGGAAAAGTTGAAAGTATCAA----TTTTCCTTGAAATTAAAG-TTTC
1 AAAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTCCTTGAAAAT-AAGTTTTC
* * *
20529094 T-AAAAAATA-TTTTGAAAAAAAGTTAAAAGTATGAATTTT
65 TAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
20529133 TCCTGCACAA
Statistics
Matches: 292, Mismatches: 26, Indels: 51
0.79 0.07 0.14
Matches are distributed among these distances:
108 21 0.07
109 26 0.09
110 3 0.01
115 1 0.00
116 8 0.03
117 32 0.11
118 1 0.00
121 25 0.09
122 42 0.14
123 8 0.03
124 49 0.17
125 26 0.09
126 50 0.17
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (124 bp):
AAAAAAATATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTTTTCCTTGAAAATAAGTTTTCT
AAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCT
Found at i:20529027 original size:51 final size:51
Alignment explanation
Indices: 20528972--20529072 Score: 125
Period size: 51 Copynumber: 2.0 Consensus size: 51
20528962 ATTTTCCTTG
* * * *
20528972 AAAATAAGCTTTCTAAAA-A-ATATTTTTGGGAAAAAGTTGAGAGTATCAATA
1 AAAATAAACTTTCAAAAATAGAT-TTTTTAGG-AAAAGTTGAAAGTATCAATA
*
20529023 AAAATAAATTTTCAAAAATAGATTTTTTAGGAAAAGTTGAAAGTATCAAT
1 AAAATAAACTTTCAAAAATAGATTTTTTAGGAAAAGTTGAAAGTATCAAT
20529073 TTTCCTTGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
51 33 0.77
52 8 0.19
53 2 0.05
ACGTcount: A:0.49, C:0.05, G:0.14, T:0.33
Consensus pattern (51 bp):
AAAATAAACTTTCAAAAATAGATTTTTTAGGAAAAGTTGAAAGTATCAATA
Found at i:20529794 original size:13 final size:13
Alignment explanation
Indices: 20529778--20529827 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
20529768 CATGAGCTCT
*
20529778 ATACTCGAGCTTC
1 ATACCCGAGCTTC
*
20529791 ATACCCGAGCTCC
1 ATACCCGAGCTTC
*
20529804 ATACTCGAGCTTC
1 ATACCCGAGCTTC
20529817 ATACCCGAGCT
1 ATACCCGAGCT
20529828 CCATCCCTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.24, C:0.36, G:0.16, T:0.24
Consensus pattern (13 bp):
ATACCCGAGCTTC
Found at i:20529800 original size:26 final size:26
Alignment explanation
Indices: 20529771--20529831 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
20529761 TGCATAACAT
*
20529771 GAGCTCTATACTCGAGCTTCATACCC
1 GAGCTCCATACTCGAGCTTCATACCC
20529797 GAGCTCCATACTCGAGCTTCATACCC
1 GAGCTCCATACTCGAGCTTCATACCC
20529823 GAGCTCCAT
1 GAGCTCCAT
20529832 CCCTCTAGGA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.23, C:0.36, G:0.16, T:0.25
Consensus pattern (26 bp):
GAGCTCCATACTCGAGCTTCATACCC
Found at i:20532870 original size:20 final size:21
Alignment explanation
Indices: 20532832--20532876 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
20532822 GGTTGTAGGG
*
20532832 ATTTTTTATTTCATATTTATC
1 ATTTTTAATTTCATATTTATC
* *
20532853 ATTTTTAATTTTAT-TTTATG
1 ATTTTTAATTTCATATTTATC
20532873 ATTT
1 ATTT
20532877 ATGTTTTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.69
Consensus pattern (21 bp):
ATTTTTAATTTCATATTTATC
Found at i:20534368 original size:60 final size:58
Alignment explanation
Indices: 20534303--20534830 Score: 598
Period size: 60 Copynumber: 8.9 Consensus size: 58
20534293 TAAAAAATAT
* *
20534303 AAAATAAAATTTTCAAGAATAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTG
1 AAAAT-AAATTTTCAA-AAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
** * * * *
20534363 AAAATATTTTTTTAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCTTTG
1 AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
* *
20534421 AAAATAAACTTTCTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAATAAA-TTT-TCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
* * *
20534481 AAAATAAGCTTTTTAAAAAAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATAA--ATTTTCAAAAAAATATTTTTGA-GAAAAAGTTGAAAGTATCAATTTTCCTTG
** * *
20534541 AAAATAAATTTAAAAAAAATATATTTTTGGGAAAAAGTTGAAAGTATCAATTTT-CTTT
1 AAAATAAATTTTCAAAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
** * *
20534599 AAAA-AAATTTTTTTTTAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTTA
1 AAAATAAA---TTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
* ** * *
20534659 AAAATAAGTTTTCAAAATGA-ATTTTTGAGAAAAAGTTGAAAGTGTCAATTTTCTTTG
1 AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
* * *
20534716 AAAATAAGTTTTCAAAAAAATAGATTTTTGAAAAAAAGTTGAAAGTATCAATTTTCCTCG
1 AAAATAAATTTTCAAAAAAAT--ATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
* * * *
20534776 AAATTAAAGTTTCTAAAAAATATTTTGGAG-AAAAGTTTGAAAGTATCAATTTTCC
1 AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAG-TTGAAAGTATCAATTTTCC
20534831 CTGTACAAAA
Statistics
Matches: 409, Mismatches: 43, Indels: 34
0.84 0.09 0.07
Matches are distributed among these distances:
57 59 0.14
58 97 0.24
59 77 0.19
60 171 0.42
61 5 0.01
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.38
Consensus pattern (58 bp):
AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTG
Found at i:20534425 original size:118 final size:118
Alignment explanation
Indices: 20534303--20534829 Score: 649
Period size: 118 Copynumber: 4.5 Consensus size: 118
20534293 TAAAAAATAT
*
20534303 AAAATAAAATTTTCAAGAATAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAAT
1 AAAAT-AAATTTTCAA-AAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAAT
* * *
20534368 A-TTTTTTTAAAAAAATATTTTTGAGG-AAAAGTTGAAAATATCAATTTTCTTTG
64 AGTTTTTTTAAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTA
* * *
20534421 AAAATAAACTTTCTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAAATAAA-TTT-TCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAAT
* *
20534486 AAGCTTTTTAAAAAAAATATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTA
64 -AGTTTTTTTAAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTA
** * * *
20534541 AAAATAAATTTAAAAAAAATATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCTTTAAAAAAA
1 AAAATAAATTTTCAAAAAA-ATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATA
* *
20534606 TTTTTTTTTAAAAAATATTTTTG-GGAAAAAGTTGAAAGTATCAATTTTCCTTA
65 GTTTTTTTAAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTA
* ** *
20534659 AAAATAAGTTTTCAAAATGA-ATTTTTGAGAAAAAGTTGAAAGTGTCAATTTTCTTTGAAAATAA
1 AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAAT-A
* * **
20534723 G--TTTTCAAAAAAATAGATTTTTGA-AAAAAAGTTGAAAGTATCAATTTTCCTCG
65 GTTTTTTTAAAAAAAT--ATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTA
* * * *
20534776 AAATTAAAGTTTCTAAAAAATATTTTGGAG-AAAAGTTTGAAAGTATCAATTTTC
1 AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAG-TTGAAAGTATCAATTTTC
20534830 CCTGTACAAA
Statistics
Matches: 354, Mismatches: 42, Indels: 26
0.84 0.10 0.06
Matches are distributed among these distances:
115 11 0.03
116 38 0.11
117 57 0.16
118 148 0.42
119 49 0.14
120 51 0.14
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.38
Consensus pattern (118 bp):
AAAATAAATTTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAG
TTTTTTTAAAAAAATATTTTTGAGGAAAAAGTTGAAAGTATCAATTTTCCTTA
Found at i:20534615 original size:16 final size:17
Alignment explanation
Indices: 20534591--20534627 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
20534581 AAAGTATCAA
20534591 TTTTCTTTAAAAAA-AT
1 TTTTCTTTAAAAAATAT
*
20534607 TTTTTTTTAAAAAATAT
1 TTTTCTTTAAAAAATAT
20534624 TTTT
1 TTTT
20534628 GGGAAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.68
17 6 0.32
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTCTTTAAAAAATAT
Found at i:20534627 original size:15 final size:16
Alignment explanation
Indices: 20534590--20534627 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
20534580 GAAAGTATCA
20534590 ATTTTCTTTAAAAAAAT
1 ATTTT-TTTAAAAAAAT
*
20534607 -TTTTTTTTAAAAAAT
1 ATTTTTTTAAAAAAAT
20534622 ATTTTT
1 ATTTTT
20534628 GGGAAAAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTTTTTAAAAAAAT
Found at i:20539665 original size:26 final size:26
Alignment explanation
Indices: 20539627--20539683 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
20539617 ACAATGGATG
20539627 AAAAATGATG-AAAAAATGAAAAATGA
1 AAAAATGATGAAAAAAATG-AAAATGA
*
20539653 AAAAATGGA-GAAAAAAATGAGAATGA
1 AAAAAT-GATGAAAAAAATGAAAATGA
20539679 AAAAA
1 AAAAA
20539684 AAAATTCAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 18 0.64
27 10 0.36
ACGTcount: A:0.70, C:0.00, G:0.18, T:0.12
Consensus pattern (26 bp):
AAAAATGATGAAAAAAATGAAAATGA
Found at i:20541568 original size:41 final size:41
Alignment explanation
Indices: 20541478--20541665 Score: 200
Period size: 41 Copynumber: 4.4 Consensus size: 41
20541468 CATGATTGTT
* * * *
20541478 AAGGAGTAATTTA-TTTTCCAAAGTCGTGGTTGCCGCTATTTA
1 AAGGAGCAATTTACTTTT-CAAAGTTGTGG-TGCCTCTGTTTA
*
20541520 AAGGAGCAATTTACTTTTCAAAGTTGAGGTGCCTCTGTTTA
1 AAGGAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTTTA
*
20541561 AAGGAGCAATTTACTTTTCAAAGTTGTGGTGCCTTTGTTTA
1 AAGGAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTTTA
* *
20541602 GAGGAGCATTTATTTTTTACTTTTCAAAGTTGTGGTGCCTTTGTTTA
1 AAGGAGCA---A---TTTACTTTTCAAAGTTGTGGTGCCTCTGTTTA
* *
20541649 GAGGAGC-ATTTATTTTT
1 AAGGAGCAATTTACTTTT
20541666 GAAGTCATGG
Statistics
Matches: 130, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
40 8 0.06
41 56 0.43
42 21 0.16
43 5 0.04
44 1 0.01
47 39 0.30
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (41 bp):
AAGGAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTTTA
Found at i:20541639 original size:47 final size:47
Alignment explanation
Indices: 20541529--20541665 Score: 205
Period size: 47 Copynumber: 3.0 Consensus size: 47
20541519 AAAGGAGCAA
* * *
20541529 TTTACTTTTCAAAGTTGAGGTGCCTCTGTTTAAAGGAGCA---A---
1 TTTACTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCATTTATTT
20541570 TTTACTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCATTTATTT
1 TTTACTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCATTTATTT
20541617 TTTACTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCATTTATTT
1 TTTACTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCATTTATTT
20541664 TT
1 TT
20541666 GAAGTCATGG
Statistics
Matches: 87, Mismatches: 3, Indels: 6
0.91 0.03 0.06
Matches are distributed among these distances:
41 37 0.43
44 1 0.01
47 49 0.56
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (47 bp):
TTTACTTTTCAAAGTTGTGGTGCCTTTGTTTAGAGGAGCATTTATTT
Found at i:20541814 original size:41 final size:41
Alignment explanation
Indices: 20541696--20541817 Score: 181
Period size: 41 Copynumber: 3.0 Consensus size: 41
20541686 TATAAAATTT
*
20541696 ATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGAAGCC
1 ATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCC
* *
20541737 ATTTATTTTTTAAAGTCGTTGATCCTCTGATTAGAGGAGCC
1 ATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCC
* * * *
20541778 ATTTGTTTCTCAAAGTCGTTAAGCCTCTGCTTAGAGGAGC
1 ATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
20541818 TTTGATTAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (41 bp):
ATTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCC
Found at i:20541855 original size:17 final size:16
Alignment explanation
Indices: 20541832--20541870 Score: 51
Period size: 17 Copynumber: 2.4 Consensus size: 16
20541822 ATTAAAATTT
* *
20541832 AAAAAAAAATAATAAA
1 AAAAAAAAAGAAGAAA
20541848 ACAAAAAAAAGAAGAAA
1 A-AAAAAAAAGAAGAAA
20541865 AAAAAA
1 AAAAAA
20541871 TAAAAAAGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.87, C:0.03, G:0.05, T:0.05
Consensus pattern (16 bp):
AAAAAAAAAGAAGAAA
Found at i:20543639 original size:59 final size:59
Alignment explanation
Indices: 20543514--20543901 Score: 454
Period size: 59 Copynumber: 6.6 Consensus size: 59
20543504 TTTCAAGAAT
* * * * *
20543514 AATATTTTTGAGAAAAAATTGAAAGTATCAATTTTTTTTGAAAAT--ATTTTTTAAAAAA
1 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAACTTTCT-AAAAA
*
20543572 AATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCTTTGAAAATAAACTTTCTAAAAA
1 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAACTTTCTAAAAA
* * *
20543631 AATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGCTTTCTAAAAAA
1 AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAACTTTCT-AAAAA
* * * *
20543691 AATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAA
1 AATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAACTTTCTAAAAA
* * *
20543750 AATATTTTTG-GAGAAAAGTTGAAAATATCAATTTTCTTTGAAAAT-AAGTTT-TCAAAA
1 AATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAACTTTCTAAAAA
* * *
20543807 AATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTT-TCTCAAAATTAAAGTTTCT-AAAA
1 AAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAA-TAAACTTTCTAAAAA
20543867 AATA-TTTTG-GGAAAGAGTTTGAAAGTATCAATTTT
1 AATATTTTTGAGGAAA-AG-TTGAAAGTATCAATTTT
20543902 TTCTGTACAA
Statistics
Matches: 292, Mismatches: 24, Indels: 28
0.85 0.07 0.08
Matches are distributed among these distances:
56 5 0.02
57 14 0.05
58 71 0.24
59 130 0.45
60 71 0.24
61 1 0.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (59 bp):
AATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGAAAATAAACTTTCTAAAAA
Found at i:20543751 original size:119 final size:119
Alignment explanation
Indices: 20543494--20543901 Score: 524
Period size: 119 Copynumber: 3.5 Consensus size: 119
20543484 CAAAAAATAT
* * * *
20543494 AAAATAAATTTTTCAAGAATAATATTTTTGAGAAAAAATTGAAAGTATCAATTTTTTTTGAAAAT
1 AAAATAAA-TTTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAAT
* * * *
20543559 -A-TTTTTTAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCTTTG
65 AAGTTTTCTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA
* * *
20543612 AAAATAAACTTTCTAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATA
1 AAAATAAATTTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATA
*
20543677 AGCTTTCTAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTA
66 AGTTTTCTAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTA
*
20543731 AAAATAAATTTTCAAAAAAAATATTTTTG-GAGAAAAGTTGAAAATATCAATTTTCTTTGAAAAT
1 AAAATAAATTTTCAAAAAAAATATTTTTGAGA-AAAAGTTGAAAGTATCAATTTTCTTTGAAAAT
*** * *
20543795 AAGTTTTC-AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCA
65 AAGTTTTCTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA
* * * * *
20543849 AAATTAAAGTTTC-TAAAAAATA-TTTTGGGAAAGAGTTTGAAAGTATCAATTTT
1 AAAATAAATTTTCAAAAAAAATATTTTTGAGAAAAAG-TTGAAAGTATCAATTTT
20543902 TTCTGTACAA
Statistics
Matches: 256, Mismatches: 27, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
116 9 0.04
117 75 0.29
118 62 0.24
119 110 0.43
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.38
Consensus pattern (119 bp):
AAAATAAATTTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCTTTGAAAATA
AGTTTTCTAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTA
Found at i:20543776 original size:178 final size:173
Alignment explanation
Indices: 20543514--20543901 Score: 516
Period size: 178 Copynumber: 2.2 Consensus size: 173
20543504 TTTCAAGAAT
* * ** * * *
20543514 AATATTTTTGAGAAAAAATTGAAAGTATCAATTTTTTTTGAAAATATTTTTTAAAAAAAATATTT
1 AATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAATTTTCAAAAAAAATATTT
20543579 TTGAGGAAAAGTTGAAAATATCAATTTTCTTTGAAAATAAACTTTCTAAAAAAAT-ATTTTTGAG
65 TTGAGGAAAAGTTGAAAATATCAATTTTCTTTGAAAAT-AACTTT-TAAAAAAATGATTTTTGAG
*
20543643 AAAAAGTTGAAAGTATCAATTTTCCTTGAAAA-T-AAGCTTTCTAAAAAA
128 AAAAAGTTGAAAGTATCAATTTTCC-TCAAAATTAAAG-TTTCT--AAAA
20543691 AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAATATT
1 AATATTTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AATTTTCAAAAAAAATATT
* *
20543756 TTTG-GAGAAAAGTTGAAAATATCAATTTTCTTTGAAAATAAGTTTTCAAAAAATGGATTTTTGA
64 TTTGAG-GAAAAGTTGAAAATATCAATTTTCTTTGAAAATAACTTTTAAAAAAAT-GATTTTTGA
* *
20543820 GGAAAAGTTGAAAGTATCAATTTTTCTCAAAATTAAAGTTTCTAAAA
127 GAAAAAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTCTAAAA
20543867 AATA-TTTTGGGAAAGAGTTTGAAAGTATCAATTTT
1 AATATTTTTGGGAAA-AG-TTGAAAGTATCAATTTT
20543902 TTCTGTACAA
Statistics
Matches: 190, Mismatches: 12, Indels: 19
0.86 0.05 0.09
Matches are distributed among these distances:
174 6 0.03
175 6 0.03
176 33 0.17
177 49 0.26
178 93 0.49
179 3 0.02
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (173 bp):
AATATTTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAATTTTCAAAAAAAATATTTT
TGAGGAAAAGTTGAAAATATCAATTTTCTTTGAAAATAACTTTTAAAAAAATGATTTTTGAGAAA
AAGTTGAAAGTATCAATTTTCCTCAAAATTAAAGTTTCTAAAA
Found at i:20544759 original size:11 final size:10
Alignment explanation
Indices: 20544745--20544814 Score: 58
Period size: 10 Copynumber: 7.0 Consensus size: 10
20544735 ACAATGAATG
20544745 AAAAATGAGA
1 AAAAATGAGA
*
20544755 AAAAA-GAAA
1 AAAAATGAGA
20544764 AGAAAATGATGA
1 A-AAAATGA-GA
20544776 AAAAATAGAGA
1 AAAAAT-GAGA
20544787 AAAAA--AGA
1 AAAAATGAGA
*
20544795 AAGAAA-GAAA
1 AA-AAATGAGA
20544805 AAAAATGAGA
1 AAAAATGAGA
20544815 TAACGAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 14
0.73 0.06 0.21
Matches are distributed among these distances:
8 5 0.10
9 10 0.20
10 16 0.33
11 14 0.29
12 4 0.08
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (10 bp):
AAAAATGAGA
Found at i:20544771 original size:20 final size:20
Alignment explanation
Indices: 20544746--20544814 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 20
20544736 CAATGAATGA
20544746 AAAATGAGAAAAAAGAAAAG
1 AAAATGAGAAAAAAGAAAAG
* *
20544766 AAAATGATGAAAAAA-TAGAG
1 AAAATGA-GAAAAAAGAAAAG
**
20544786 AAAAAAAGAAAGAAAGAAAA-
1 AAAATGAGAAA-AAAGAAAAG
20544806 AAAATGAGA
1 AAAATGAGA
20544815 TAACGAAAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
19 4 0.11
20 25 0.66
21 9 0.24
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (20 bp):
AAAATGAGAAAAAAGAAAAG
Found at i:20544787 original size:32 final size:31
Alignment explanation
Indices: 20544737--20544800 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 31
20544727 AGATATCAAC
20544737 AATGAATGAAAAATGAG-AAAAAAGAAAAGAA
1 AATGAATGAAAAATGAGAAAAAAAG-AAAGAA
20544768 AATG-ATGAAAAAATAGAGAAAAAAAGAAAGAA
1 AATGAATG-AAAAAT-GAGAAAAAAAGAAAGAA
20544800 A
1 A
20544801 GAAAAAAAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
30 3 0.10
31 10 0.33
32 10 0.33
33 7 0.23
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (31 bp):
AATGAATGAAAAATGAGAAAAAAAGAAAGAA
Found at i:20546682 original size:40 final size:40
Alignment explanation
Indices: 20546588--20546754 Score: 156
Period size: 41 Copynumber: 4.1 Consensus size: 40
20546578 GATTGTTAAG
* * *
20546588 GAGCAATTTACTTTTAAAAGTTGCTGTGCCTCTATTTATAA
1 GAGCAATTTAC-TTTAAAAGTTGATGTGCCTCTGTTTAGAA
*
20546629 GAGCAATTTACTTTCAAAAGTTGAGGTGCCTCTGTTT-GAA
1 GAGCAATTTACTTT-AAAAGTTGATGTGCCTCTGTTTAGAA
* * ** *
20546669 GAGCAATTTACTTTTAAAGTTGTTAAGCCTCTGTTTAGAG
1 GAGCAATTTACTTTAAAAGTTGATGTGCCTCTGTTTAGAA
* * * * * *
20546709 GAGCAATTTATTTTGTCAAAGTTGTTGAGCCTCTGATTAGAG
1 GAGCAATTTA-CTT-TAAAAGTTGATGTGCCTCTGTTTAGAA
20546751 GAGC
1 GAGC
20546755 CTTTTATTTT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
39 17 0.16
40 31 0.29
41 32 0.30
42 28 0.26
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.38
Consensus pattern (40 bp):
GAGCAATTTACTTTAAAAGTTGATGTGCCTCTGTTTAGAA
Found at i:20546730 original size:81 final size:82
Alignment explanation
Indices: 20546588--20547037 Score: 277
Period size: 82 Copynumber: 5.5 Consensus size: 82
20546578 GATTGTTAAG
* ** * * * *
20546588 GAGCAATTTACTTTTAAAAGTTGCTGTGCCTCTATTTATAAGAGCAATTTA-CTTTCAAAAGTTG
1 GAGCAATTTACTTTTAAAAGTTGTTAAGCCTCTGTTTAGAGGAGCAATTTATTTTTC-AAAGTTG
* *
20546652 AGGTGCCTCTG-TTTGAA
65 AGGAGCCTCTGATTAGAA
20546669 GAGCAATTTACTTTT-AAAGTTGTTAAGCCTCTGTTTAGAGGAGCAATTTATTTTGTCAAAGTTG
1 GAGCAATTTACTTTTAAAAGTTGTTAAGCCTCTGTTTAGAGGAGCAATTTATTTT-TCAAAGTTG
** *
20546733 TTGAGCCTCTGATTAGAG
65 AGGAGCCTCTGATTAGAA
** * * * *
20546751 GAGCCTTTTATTTTTCAAAAGTCGTTGAA-CCTCTGATTAGAGGAGCCATTTATTTTTCAAAGTT
1 GAGCAATTTACTTTT-AAAAGTTGTT-AAGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTT
*
20546815 GTA-GAGCCTCTGATTAGAG
64 G-AGGAGCCTCTGATTAGAA
* ** ** ** *
20546834 GAGC--TTT--GTTT-AAAG-TCATAGAGCCTCTAATTAGAGGAGCCGTTTATTTTTCAAAGTCG
1 GAGCAATTTACTTTTAAAAGTTGTTA-AGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTG
*
20546893 TA-GAGCCTCTGATTAGAG
65 -AGGAGCCTCTGATTAGAA
** * ** * ** *
20546911 GAGCCGTTTA-TTTTCCAAAGTCATTGAGCCTCTGTTTAGAGGAGCCGTTTA-TTTTCAAAGTCG
1 GAGCAATTTACTTTT-AAAAGTTGTTAAGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTG
** *
20546974 TTGAGCCTATGATTA-AA
65 AGGAGCCTCTGATTAGAA
* * * *
20546991 GGAGC--TTTAATCATTTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGC
1 -GAGCAATTT-A-C-TTTTAAAAGTTGTTAAGCCTCTGTTTAGAGGAGC
20547038 TTTGTTTATG
Statistics
Matches: 309, Mismatches: 39, Indels: 41
0.79 0.10 0.11
Matches are distributed among these distances:
75 1 0.00
76 2 0.01
77 59 0.19
79 9 0.03
80 34 0.11
81 63 0.20
82 72 0.23
83 34 0.11
84 33 0.11
85 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.37
Consensus pattern (82 bp):
GAGCAATTTACTTTTAAAAGTTGTTAAGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTTGA
GGAGCCTCTGATTAGAA
Found at i:20546825 original size:41 final size:41
Alignment explanation
Indices: 20546675--20547081 Score: 445
Period size: 42 Copynumber: 9.9 Consensus size: 41
20546665 TGAAGAGCAA
* * * * **
20546675 TTTACTTTT-AAAGTTGTTAAGCCTCTGTTTAGAGGAGCAA
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* *
20546715 TTTATTTTGTCAAAGTTGTTGAGCCTCTGATTAGAGGAGCCT
1 TTTATTTT-TCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* *
20546757 TTTATTTTTCAAAAGTCGTTGAACCTCTGATTAGAGGAGCCA
1 TTTATTTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* *
20546799 TTTATTTTTCAAAGTTGTAGAGCCTCTGATTAGAGGAG-C-
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* * * *
20546838 -TT-TGTTT-AAAGTCATAGAGCCTCTAATTAGAGGAGCCG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
*
20546876 TTTATTTTTCAAAGTCGTAGAGCCTCTGATTAGAGGAGCCG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* * *
20546917 TTTATTTTCCAAAGTCATTGAGCCTCTGTTTAGAGGAGCCG
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* *
20546958 TTTA-TTTTCAAAGTCGTTGAGCCTATGATTAAAGGAG-C-
1 TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
* *
20546996 TTTAATCATTTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTG
1 TTT-AT--TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC--CG
*
20547042 TTTATGTTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAG
1 TTTA--TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG
20547082 TTTTGATCAA
Statistics
Matches: 316, Mismatches: 33, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
36 25 0.08
37 5 0.02
38 5 0.02
39 4 0.01
40 40 0.13
41 98 0.31
42 103 0.33
45 32 0.10
46 3 0.01
47 1 0.00
ACGTcount: A:0.25, C:0.15, G:0.22, T:0.38
Consensus pattern (41 bp):
TTTATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCG
Found at i:20547013 original size:82 final size:80
Alignment explanation
Indices: 20546680--20547081 Score: 436
Period size: 82 Copynumber: 4.9 Consensus size: 80
20546670 AGCAATTTAC
* * * ** *
20546680 TTTTAAAGTTGTTAAGCCTCTGTTTAGAGGAGCAATTTATTTTGTCAAAGTTGTTGAGCCTCTGA
1 TTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCCGTTTATTTT-TCAAAGTCGTTGAGCCTCTGA
20546745 TTAGAGGAGCCTTTTAT
65 TTAGAGGAGCCTTTT-T
* * * *
20546762 TTTTCAAAAGTCGTTGAACCTCTGATTAGAGGAGCCATTTATTTTTCAAAGTTGTAGAGCCTCTG
1 TTTT--AAAGTCGTTGAGCCTCTGATTAGAGGAGCCGTTTATTTTTCAAAGTCGTTGAGCCTCTG
20546827 ATTAGAGGAG-C--TTT
64 ATTAGAGGAGCCTTTTT
* * * * *
20546841 GTTTAAAGTCATAGAGCCTCTAATTAGAGGAGCCGTTTATTTTTCAAAGTCGTAGAGCCTCTGAT
1 TTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCCGTTTATTTTTCAAAGTCGTTGAGCCTCTGAT
20546906 TAGAGGAGCCGTTTATT
66 TAGAGGAGCC-TTT-TT
** * * *
20546923 TTCCAAAGTCATTGAGCCTCTGTTTAGAGGAGCCGTTTA-TTTTCAAAGTCGTTGAGCCTATGAT
1 TTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCCGTTTATTTTTCAAAGTCGTTGAGCCTCTGAT
*
20546987 TAAAGGAG-CTTTAATCAT
66 TAGAGGAGCCTTT--T--T
*
20547005 TTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGTTTATGTTTTTCAAAGTCGTTGAGCCTC
1 TTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGC--CGTTTA--TTTTTCAAAGTCGTTGAGCCTC
*
20547070 TGCTTAGAGGAG
62 TGATTAGAGGAG
20547082 TTTTGATCAA
Statistics
Matches: 275, Mismatches: 30, Indels: 25
0.83 0.09 0.08
Matches are distributed among these distances:
77 63 0.23
78 1 0.00
79 7 0.03
80 5 0.02
81 31 0.11
82 70 0.25
83 29 0.11
84 39 0.14
87 30 0.11
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (80 bp):
TTTTAAAGTCGTTGAGCCTCTGATTAGAGGAGCCGTTTATTTTTCAAAGTCGTTGAGCCTCTGAT
TAGAGGAGCCTTTTT
Found at i:20547097 original size:45 final size:44
Alignment explanation
Indices: 20546879--20547097 Score: 199
Period size: 41 Copynumber: 5.1 Consensus size: 44
20546869 GGAGCCGTTT
* *
20546879 ATTTTTCAAAGTCGTAGAGCCTCTGATTAGAGGAGCCGTT--T--
1 ATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG-CTTTGATCA
* * * *
20546920 ATTTTCCAAAGTCATTGAGCCTCTGTTTAGAGGAGCCGTT--T--
1 ATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAG-CTTTGATCA
* * *
20546961 A-TTTTCAAAGTCGTTGAGCCTATGATTAAAGGAGCTTTAATC-
1 ATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGATCA
* *
20547003 ATTTTT-AAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGTTTA
1 ATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGATCA
* * *
20547046 TGTTTTTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGTTTTGATCAA
1 -ATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGATC-A
20547092 ATTTTT
1 ATTTTT
20547098 AACACAAAAA
Statistics
Matches: 149, Mismatches: 21, Indels: 12
0.82 0.12 0.07
Matches are distributed among these distances:
39 3 0.02
40 28 0.19
41 39 0.26
42 32 0.21
43 4 0.03
44 5 0.03
45 37 0.25
46 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.22, T:0.39
Consensus pattern (44 bp):
ATTTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGATCA
Found at i:20547327 original size:4 final size:4
Alignment explanation
Indices: 20547272--20547314 Score: 52
Period size: 4 Copynumber: 10.5 Consensus size: 4
20547262 TTCTGGTATT
*
20547272 TTTA TTTT TTGTA TCTTA TTTA TTTA -TTA TTTA TTTA TTTA TT
1 TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TT
20547315 GTTACTATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
3 3 0.09
4 25 0.74
5 5 0.15
6 1 0.03
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:20547384 original size:20 final size:20
Alignment explanation
Indices: 20547359--20547398 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
20547349 TATACATACT
20547359 TTATTATAATTTATCAATTA
1 TTATTATAATTTATCAATTA
* *
20547379 TTATTATTATTTATCTATTA
1 TTATTATAATTTATCAATTA
20547399 ATTAATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (20 bp):
TTATTATAATTTATCAATTA
Found at i:20547409 original size:20 final size:20
Alignment explanation
Indices: 20547367--20547406 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
20547357 CTTTATTATA
*
20547367 ATTTATCAATTATTATTATT
1 ATTTATCAATTATTAATATT
*
20547387 ATTTATCTATTAATTAATAT
1 ATTTATCAATT-ATTAATAT
20547407 ATTATCCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTATCAATTATTAATATT
Found at i:20547440 original size:12 final size:11
Alignment explanation
Indices: 20547414--20547448 Score: 54
Period size: 12 Copynumber: 3.2 Consensus size: 11
20547404 TATATTATCC
20547414 TTATTTT-TTT
1 TTATTTTATTT
20547424 TTATTTTATTGT
1 TTATTTTATT-T
20547436 TTATTTTATTT
1 TTATTTTATTT
20547447 TT
1 TT
20547449 TTCTTTTCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 7 0.30
11 5 0.22
12 11 0.48
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (11 bp):
TTATTTTATTT
Found at i:20548299 original size:4 final size:4
Alignment explanation
Indices: 20548273--20548344 Score: 65
Period size: 4 Copynumber: 20.5 Consensus size: 4
20548263 CCAGGTTTTT
*
20548273 TTTA -TTA TTT- TTCA TTT- TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
20548318 -TTA -TTA -TTA -TTA -TTA -TTA -TTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
20548345 GATTAGATTA
Statistics
Matches: 62, Mismatches: 2, Indels: 8
0.86 0.03 0.11
Matches are distributed among these distances:
3 29 0.47
4 33 0.53
ACGTcount: A:0.25, C:0.01, G:0.00, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:20548323 original size:3 final size:3
Alignment explanation
Indices: 20548315--20548340 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
20548305 ATTTATTTAT
20548315 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
20548341 TATTGATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:20548379 original size:5 final size:5
Alignment explanation
Indices: 20548369--20548428 Score: 63
Period size: 5 Copynumber: 11.8 Consensus size: 5
20548359 TGTTTAACAC
20548369 ATTTT ATTTT ATTTT -TCTTT ATTTTT ATTTT CATTTTT ATTTT A-TTT
1 ATTTT ATTTT ATTTT AT-TTT A-TTTT ATTTT -A-TTTT ATTTT ATTTT
20548416 -TTTT ATTTT ATTT
1 ATTTT ATTTT ATTT
20548429 CCTTTAAATA
Statistics
Matches: 48, Mismatches: 0, Indels: 14
0.77 0.00 0.23
Matches are distributed among these distances:
4 7 0.15
5 30 0.62
6 6 0.12
7 5 0.10
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:20548395 original size:6 final size:6
Alignment explanation
Indices: 20548370--20548428 Score: 54
Period size: 6 Copynumber: 10.3 Consensus size: 6
20548360 GTTTAACACA
* *
20548370 TTTTA- TTTTA- TTTT-T CTTTAT TTTTAT TTTCAT TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
*
20548414 TTTTTT ATTTTAT TT
1 TTTTAT -TTTTAT TT
20548429 CCTTTAAATA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
5 17 0.39
6 22 0.50
7 5 0.11
ACGTcount: A:0.15, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:20548546 original size:59 final size:61
Alignment explanation
Indices: 20548445--20548606 Score: 249
Period size: 59 Copynumber: 2.7 Consensus size: 61
20548435 AATAAAATTC
20548445 AAAAAAATATTTTTAA-ATGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAA
1 AAAAAAATATTTTTAAGA--AAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAA
20548507 AAAAAAATATTTTTAAGAAAAAGTT-AAA-TATCAATTTTTCTTGAAAATAAGTTTTCTAA
1 AAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAA
* * *
20548566 AAAAGACATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAA-AAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTT
20548607 CGTAAAAAAA
Statistics
Matches: 93, Mismatches: 3, Indels: 8
0.89 0.03 0.08
Matches are distributed among these distances:
59 35 0.38
60 21 0.23
61 10 0.11
62 26 0.28
63 1 0.01
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (61 bp):
AAAAAAATATTTTTAAGAAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCTAA
Found at i:20548639 original size:107 final size:109
Alignment explanation
Indices: 20548504--20548830 Score: 371
Period size: 107 Copynumber: 2.9 Consensus size: 109
20548494 ATAAGTTTTC
*
20548504 TAAAAAAAAATATTTTTAAGAAAAAGTTAAATATCAATTTTTCTTGAAAATAAGTTTTCTAAAAA
1 TAAAAAAAAAAATTTTTAAGAAAAAGTTAAATATCAATTTTTCTTGAAAATAAGTTTTCTAAAAA
*
20548569 AGACATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC-G-TAA
66 AGA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTGAAAA
* * * * *
20548612 -AAAAAAAAAAATCTTTAAGGAAAAGTTAAGTATCAATTTTTTTTGAAAATAAGTTTTTTAAAAA
1 TAAAAAAAAAAATTTTTAAGAAAAAGTTAAATATCAATTTTTCTTGAAAATAAGTTTTCTAAAAA
* * *
20548676 AGATATATTTTGGAAGAAAAGTTGAAAGCATCAATTTTCTTTGAAAA
66 AGA-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTC--TGAAAA
20548723 TAAGTTTTCTAAAAAAAATATTTTTGAA-AAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAG
1 TAA-------AAAAAAAA-ATTTTT-AAGAAAAAGTT-AAA-TATCAATTTTTCTTGAAAATAAG
*
20548787 CTTTCT--AAAA-AATATTTTTGAGGAAAAGTTGAAAGTATCAATTT
55 TTTTCTAAAAAAGAATATTTTTGAGGAAAAGTTGAAAGTATCAATTT
20548831 ATCAATTTTT
Statistics
Matches: 183, Mismatches: 20, Indels: 22
0.81 0.09 0.10
Matches are distributed among these distances:
107 93 0.51
110 1 0.01
111 2 0.01
112 2 0.01
118 30 0.16
119 9 0.05
120 16 0.09
121 4 0.02
122 26 0.14
ACGTcount: A:0.47, C:0.05, G:0.12, T:0.36
Consensus pattern (109 bp):
TAAAAAAAAAAATTTTTAAGAAAAAGTTAAATATCAATTTTTCTTGAAAATAAGTTTTCTAAAAA
AGAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTGAAAA
Found at i:20548695 original size:60 final size:59
Alignment explanation
Indices: 20548631--20548954 Score: 276
Period size: 60 Copynumber: 5.4 Consensus size: 59
20548621 AATCTTTAAG
*
20548631 GAAAAGTT-AAGTATCAATTTTTTTTGAAAATAAGTTTTTTAAAAAAGATATATTTTGGAA
1 GAAAAGTTAAAGTATCAATTTTTTTTGAAAATAAGTTTTCTAAAAAA-ATATATTTT-GAA
* *
20548691 GAAAAGTTGAAAGCATCAATTTTCTTTGAAAATAAGTTTTCTAAAAAAA-ATATTTTTGAA
1 GAAAAGTT-AAAGTATCAATTTTTTTTGAAAATAAGTTTTCTAAAAAAATATA-TTTTGAA
* * * *
20548751 AAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT-AAAAAATAT-TTTTGAG
1 GAAAAGTT-AAAGTATCAATTTTTTTTGAAAATAAGTTTTCTAAAAAAATATATTTTGAA
* *
20548809 GAAAAGTTGAAAGTATCAATTTATCAATTTTTTTTTAAAATAAGCTTTCT-AAAAAATAT-TTTT
1 GAAAAGTT-AAAG--------TATCAATTTTTTTTGAAAATAAGTTTTCTAAAAAAATATATTTT
*
20548872 G-G
57 GAA
* * *
20548874 GAAAAGTTGAAAGTATCAA-TTTTTCTCAAAATTAAAG-TTTCT--AAAAA-ATATTTTGGA
1 GAAAAGTT-AAAGTATCAATTTTTTTTGAAAA-T-AAGTTTTCTAAAAAAATATATTTTGAA
*
20548931 GAAAAGTTGAAATTATCAATTTTT
1 GAAAAGTT-AAAGTATCAATTTTT
20548955 CCTGCACAAA
Statistics
Matches: 229, Mismatches: 18, Indels: 36
0.81 0.06 0.13
Matches are distributed among these distances:
55 2 0.01
56 20 0.09
57 30 0.13
58 24 0.10
59 6 0.03
60 52 0.23
61 5 0.02
62 35 0.15
65 14 0.06
66 41 0.18
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.40
Consensus pattern (59 bp):
GAAAAGTTAAAGTATCAATTTTTTTTGAAAATAAGTTTTCTAAAAAAATATATTTTGAA
Found at i:20548884 original size:65 final size:66
Alignment explanation
Indices: 20548764--20548895 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
20548754 AAGTTAAAAG
20548764 TATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
1 TATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
20548829 T
66 T
* *
20548830 TATCAATTTTTTTTTAAAATAAGCTTTCTAAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAAT
1 TATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
20548894 T
66 T
20548895 T
1 T
20548896 TTCTCAAAAT
Statistics
Matches: 64, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
65 23 0.36
66 41 0.64
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (66 bp):
TATCAATTTTTCTTGAAAATAAGCTTTCTAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAAT
T
Found at i:20548898 original size:123 final size:122
Alignment explanation
Indices: 20548614--20548952 Score: 360
Period size: 122 Copynumber: 2.8 Consensus size: 122
20548604 TTTCGTAAAA
* * * * *
20548614 AAAAAAAAATCTTTAAGGAAAAGTT-AAGTATCAATTTTTTTTGAAAATAAGTTTTTTAAAAAAG
1 AAAAAAATATTTTTGAGGAAAAGTTAAAGTATCAATTTTTCTTGAAAATAAG-TTTCT-AAAAA-
*
20548678 ATATATTTTGGAAGAAAAGTTGAAAG---C-----ATCAATTTTCTTTGAAAATAAGTTTTCT
63 ATAT-TTTT-G-AGAAAAGTTGAAAGTATCAATTTATCAATTTTCTTTGAAAATAAGCTTTCT
**
20548733 AAAAAAAATATTTTTGAAAAAAAGTTAAAAGTATCAATTTTTCTTGAAAATAAGCTTTCTAAAAA
1 -AAAAAAATATTTTTGAGGAAAAGTT-AAAGTATCAATTTTTCTTGAAAATAAG-TTTCTAAAAA
* *
20548798 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTATCAATTTTTTTTTAAAATAAGCTTTCT
63 ATATTTTTGA-GAAAAGTTGAAAGTATCAATTTATCAATTTTCTTTGAAAATAAGCTTTCT
*
20548859 -AAAAAATATTTTTG-GGAAAAGTTGAAAGTATCAATTTTTC-TCAAAATTAAAGTTTCTAAAAA
1 AAAAAAATATTTTTGAGGAAAAGTT-AAAGTATCAATTTTTCTTGAAAA-T-AAGTTTCTAAAAA
* *
20548921 ATATTTTGGAGAAAAGTTGAAATTATCAATTT
63 ATATTTTTGAGAAAAGTTGAAAGTATCAATTT
20548953 TTCCTGCACA
Statistics
Matches: 189, Mismatches: 17, Indels: 24
0.82 0.07 0.10
Matches are distributed among these distances:
117 1 0.01
118 14 0.07
119 4 0.02
120 24 0.13
121 6 0.03
122 55 0.29
123 43 0.23
124 17 0.09
126 25 0.13
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.38
Consensus pattern (122 bp):
AAAAAAATATTTTTGAGGAAAAGTTAAAGTATCAATTTTTCTTGAAAATAAGTTTCTAAAAAATA
TTTTTGAGAAAAGTTGAAAGTATCAATTTATCAATTTTCTTTGAAAATAAGCTTTCT
Found at i:20554682 original size:2 final size:2
Alignment explanation
Indices: 20554675--20554699 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20554665 TTCACATAAA
20554675 TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG T
20554700 AAGAGAGAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:20556449 original size:2 final size:2
Alignment explanation
Indices: 20556442--20556466 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20556432 GAGCTCTTAA
20556442 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
20556467 AAGCTGTTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20562549 original size:15 final size:16
Alignment explanation
Indices: 20562523--20562553 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
20562513 TTCTTTCTCG
20562523 ATTTTTTGTTTTTACA
1 ATTTTTTGTTTTTACA
20562539 ATTTTTT-TTTTTACA
1 ATTTTTTGTTTTTACA
20562554 CTCCCTTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.19, C:0.06, G:0.03, T:0.71
Consensus pattern (16 bp):
ATTTTTTGTTTTTACA
Found at i:20562683 original size:15 final size:15
Alignment explanation
Indices: 20562663--20562697 Score: 56
Period size: 13 Copynumber: 2.5 Consensus size: 15
20562653 CTTTTTTAAA
20562663 TTTTAATAATGAGAT
1 TTTTAATAATGAGAT
20562678 TTTT-A-AATGAGAT
1 TTTTAATAATGAGAT
20562691 TTTTAAT
1 TTTTAAT
20562698 TTCTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
13 12 0.67
14 2 0.11
15 4 0.22
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (15 bp):
TTTTAATAATGAGAT
Found at i:20564787 original size:89 final size:89
Alignment explanation
Indices: 20564675--20564861 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 89
20564665 TCTGCATAAT
* * * * * * *
20564675 ATATTCAGTGTTTGTCTATTTATGCATTATTCAATGTTTTT-TGTTTATGTATGATAAAGTTTTC
1 ATATTCATTGTTTATATATTTATGCATTATTCAATGTTTTTCTATTTATGCATAATAAAGTTTTA
* *
20564739 TATTTTGCATGGTTTATGTATTAAG
66 TATTTTACAT-GATTATGTATTAAG
* *
20564764 ATATTCATTGTTTATATGTTTATGCATTATTCAGTGTTTTTCTATTTATGCATAATAAAGTTTTA
1 ATATTCATTGTTTATATATTTATGCATTATTCAATGTTTTTCTATTTATGCATAATAAAGTTTTA
* *
20564829 TGTTTTATATGATTATGTATTAAG
66 TATTTTACATGATTATGTATTAAG
20564853 ATATTCATT
1 ATATTCATT
20564862 ATTTGTCTGC
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
89 58 0.69
90 26 0.31
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.54
Consensus pattern (89 bp):
ATATTCATTGTTTATATATTTATGCATTATTCAATGTTTTTCTATTTATGCATAATAAAGTTTTA
TATTTTACATGATTATGTATTAAG
Found at i:20564796 original size:26 final size:26
Alignment explanation
Indices: 20564765--20564816 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20564755 TGTATTAAGA
* *
20564765 TATTCATTGTTTATATGTTTATGCAT
1 TATTCAGTGTTTATATATTTATGCAT
* *
20564791 TATTCAGTGTTTTTCTATTTATGCAT
1 TATTCAGTGTTTATATATTTATGCAT
20564817 AATAAAGTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.21, C:0.10, G:0.12, T:0.58
Consensus pattern (26 bp):
TATTCAGTGTTTATATATTTATGCAT
Found at i:20570775 original size:26 final size:26
Alignment explanation
Indices: 20570698--20570779 Score: 110
Period size: 26 Copynumber: 3.2 Consensus size: 26
20570688 GTAGATATGA
* *
20570698 AATTGATTTTATCTTTTGATAGGTAA
1 AATTGATTTTATCTTTTGATAAGTAG
* *
20570724 AATTGATTTTGTCTTTTGATATGTAG
1 AATTGATTTTATCTTTTGATAAGTAG
* *
20570750 AATTGACTTTATCTTTTAATAAGTAG
1 AATTGATTTTATCTTTTGATAAGTAG
20570776 AATT
1 AATT
20570780 TGCCCAATGA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.30, C:0.05, G:0.15, T:0.50
Consensus pattern (26 bp):
AATTGATTTTATCTTTTGATAAGTAG
Found at i:20571158 original size:129 final size:128
Alignment explanation
Indices: 20570928--20571180 Score: 389
Period size: 129 Copynumber: 2.0 Consensus size: 128
20570918 TAATGTAAGG
* ** *
20570928 TTTGTTTTAAACTTTCAAGCTATGAGTTTGTAAAAGAATTATGAGCTTTCATAAATAGTTGTTTT
1 TTTGTTTTAAACTTTCAAGCTATGAGTTTGTAAAAGAATTATAAGCTTTCATAAATAGTAATTTC
* *
20570993 TAATGTGTTATTTATTGCTGCCCATTGCTATTAAATATGGTGTTAAATGCCTTCTTCAAGTAGA
66 TAATGTGTTATTTATTGCTGCCCATTACTATTAAATATAGTGTTAAATG-CTTCTTCAAGTAGA
* * * *
20571057 TTTGTTTTAAACTTTCAAGCTATGAGTTTGTAAAATAGTTTTAAGTTTTCATAAATAGTAATTTC
1 TTTGTTTTAAACTTTCAAGCTATGAGTTTGTAAAAGAATTATAAGCTTTCATAAATAGTAATTTC
* *
20571122 TAATGTGTTATTTATTGTTGCCCATTACTGTTAAATATAGTGTTAAATGCTTCTTCAAG
66 TAATGTGTTATTTATTGCTGCCCATTACTATTAAATATAGTGTTAAATGCTTCTTCAAG
20571181 CAGAGCAATA
Statistics
Matches: 112, Mismatches: 12, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
128 10 0.09
129 102 0.91
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.45
Consensus pattern (128 bp):
TTTGTTTTAAACTTTCAAGCTATGAGTTTGTAAAAGAATTATAAGCTTTCATAAATAGTAATTTC
TAATGTGTTATTTATTGCTGCCCATTACTATTAAATATAGTGTTAAATGCTTCTTCAAGTAGA
Found at i:20575318 original size:74 final size:72
Alignment explanation
Indices: 20575195--20575371 Score: 230
Period size: 74 Copynumber: 2.4 Consensus size: 72
20575185 CAAACAAAGC
*
20575195 CTAAGATTAAAACATAATATTTGTTGAAAACATGAAAAAATATATTTTTCAAAATTCAACAAAAA
1 CTAAGATTAAAA-ATAATATTTGTTGAAAACATGAAAAAATATAGTTTTCAAAATTCAACAAAAA
20575260 TAATGTTT
65 TAATGTTT
* * * *
20575268 CTAAGATTAAAAATGCAATCTTTGTTGAAAATATGAAAAAATATAGTTTTCATAATTCAATAAAA
1 CTAAGATTAAAAAT--AATATTTGTTGAAAACATGAAAAAATATAGTTTTCAAAATTCAACAAAA
* *
20575333 ATGATTTTT
64 ATAATGTTT
*
20575342 CTAAGA-TAAAAACTTATCATTTGTTGAAAA
1 CTAAGATTAAAAA-TAAT-ATTTGTTGAAAA
20575372 GACGATGTTT
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
72 4 0.04
73 29 0.32
74 58 0.64
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (72 bp):
CTAAGATTAAAAATAATATTTGTTGAAAACATGAAAAAATATAGTTTTCAAAATTCAACAAAAAT
AATGTTT
Found at i:20575478 original size:113 final size:112
Alignment explanation
Indices: 20575277--20575484 Score: 260
Period size: 112 Copynumber: 1.8 Consensus size: 112
20575267 TCTAAGATTA
* * * *
20575277 AAAATGCAATCTTTGTTGAAAATATGAAAAAATATAGTTTTCATAATTCAATAAAAATGATTTTT
1 AAAATGCAATCTTTGTTAAAAATATAAAAAAATATAGTTTTCATAAATCAATAAAAATGATATTT
* *
20575342 CTAAGATAAAAACTTATCATTTGTTGAAAAGACGATGTTTCTATAAT
66 CTAAGATAAAAACTAATCATTTGTTAAAAAGACGATGTTTCTATAAT
* * *
20575389 AAAATGCAGTTTTTGTTAAAAATATAAAAAATATATAGTTTTCA-AAATCAA-ATAAATGCAATA
1 AAAATGCAATCTTTGTTAAAAATATAAAAAA-ATATAGTTTTCATAAATCAATAAAAATG--ATA
* *
20575452 TTTCTAAGATTAAAAAGTAAT-TTTTGTTAAAAA
63 TTTCTAAGA-TAAAAACTAATCATTTGTTAAAAA
20575485 CATTAAAATA
Statistics
Matches: 81, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
111 6 0.07
112 33 0.41
113 33 0.41
114 9 0.11
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.37
Consensus pattern (112 bp):
AAAATGCAATCTTTGTTAAAAATATAAAAAAATATAGTTTTCATAAATCAATAAAAATGATATTT
CTAAGATAAAAACTAATCATTTGTTAAAAAGACGATGTTTCTATAAT
Found at i:20575546 original size:20 final size:22
Alignment explanation
Indices: 20575523--20575579 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 22
20575513 TAAAGATGAC
20575523 ATTTCTAATATAAAAACG-T-A
1 ATTTCTAATATAAAAACGATAA
*
20575543 ATTT-TTAT-TAAAAA-GATAA
1 ATTTCTAATATAAAAACGATAA
20575562 ATTTTCTAATATAAAAAC
1 A-TTTCTAATATAAAAAC
20575580 TACAGTCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
17 1 0.03
18 7 0.24
19 5 0.17
20 7 0.24
21 3 0.10
22 6 0.21
ACGTcount: A:0.51, C:0.07, G:0.04, T:0.39
Consensus pattern (22 bp):
ATTTCTAATATAAAAACGATAA
Found at i:20575559 original size:40 final size:41
Alignment explanation
Indices: 20575524--20575603 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 41
20575514 AAAGATGACA
*
20575524 TTTCTAATATAAAAACGTA-A-TTTTTATTAAAAAGATAAAT
1 TTTCTAATATAAAAAC-TACAGTCTTTATTAAAAAGATAAAT
*
20575564 TTTCTAATATAAAAACTACAGTCTTTATTAAAAATATAAA
1 TTTCTAATATAAAAACTACAGTCTTTATTAAAAAGATAAA
20575604 AAAATAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
39 2 0.06
40 17 0.47
41 17 0.47
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (41 bp):
TTTCTAATATAAAAACTACAGTCTTTATTAAAAAGATAAAT
Found at i:20575601 original size:187 final size:185
Alignment explanation
Indices: 20575229--20575606 Score: 412
Period size: 185 Copynumber: 2.0 Consensus size: 185
20575219 TGAAAACATG
*
20575229 AAAAAATATATTTTTCAAAATTCAACAAAAATAATGTTTCTAAGATTAAAAATGCAATCTTTGTT
1 AAAAAATATATTTTTCAAAATTCAACAAAAATAATATTTCTAAGATTAAAAATGCAATCTTTGTT
* * ** *
20575294 GAAAATATGAAAAAATATAGTTTTCATAATTCAATAAAAATGATTTTTCTAAGATAAAAACTTAT
66 AAAAACATGAAAAAATATAGTTTTCATAATTCAATAAAAATGACATTTCTAAGATAAAAACTAAT
* * ** * * *
20575359 CATTTGTTGAAAAGACGATGTTTCTATAATAAAATGCAGTTTTTGTTAAAAATAT
131 CATTTATTAAAAAGAAAATGTTTCTATAATAAAATACAGTCTTTATTAAAAATAT
* * *
20575414 AAAAAATATATAGTTTTCAAAA-TCAA-ATAAATGCAATATTTCTAAGATTAAAAA-GTAATTTT
1 AAAAAATATAT--TTTTCAAAATTCAACAAAAAT--AATATTTCTAAGATTAAAAATGCAATCTT
* * * * *
20575476 TGTTAAAAACATTAAAATATATA-TTTT-TTGAATTCAATAAAGATGACATTTCTAATATAAAAA
62 TGTTAAAAACATGAAAAAATATAGTTTTCAT-AATTCAATAAAAATGACATTTCTAAGATAAAAA
*
20575539 CGTAAT-TTTTATTAAAAAGATAAAT-TTTCTA-ATATAAAAACTACAGTCTTTATTAAAAATAT
126 C-TAATCATTTATTAAAAAGA-AAATGTTTCTATA-AT-AAAA-TACAGTCTTTATTAAAAATAT
20575601 AAAAAA
1 AAAAAA
20575607 ATAAAAATGT
Statistics
Matches: 161, Mismatches: 22, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
184 2 0.01
185 69 0.43
186 38 0.24
187 52 0.32
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.37
Consensus pattern (185 bp):
AAAAAATATATTTTTCAAAATTCAACAAAAATAATATTTCTAAGATTAAAAATGCAATCTTTGTT
AAAAACATGAAAAAATATAGTTTTCATAATTCAATAAAAATGACATTTCTAAGATAAAAACTAAT
CATTTATTAAAAAGAAAATGTTTCTATAATAAAATACAGTCTTTATTAAAAATAT
Found at i:20578405 original size:28 final size:29
Alignment explanation
Indices: 20578351--20578421 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 29
20578341 TGAATAATTT
20578351 TTAAATTATAATAAAATATTTAATATGATA-
1 TTAAATTAT-A-AAAATATTTAATATGATAC
* *
20578381 TCTAAATTTTAAAAAT-TTTATTATGATAC
1 T-TAAATTATAAAAATATTTAATATGATAC
20578410 TTAAATTATAAA
1 TTAAATTATAAA
20578422 TTTATTAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 21 0.58
29 6 0.17
30 2 0.06
31 7 0.19
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.45
Consensus pattern (29 bp):
TTAAATTATAAAAATATTTAATATGATAC
Found at i:20581065 original size:6 final size:6
Alignment explanation
Indices: 20581056--20581093 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
20581046 TATAAACATA
20581056 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
20581094 AACATACGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTAT
Found at i:20582039 original size:2 final size:2
Alignment explanation
Indices: 20582032--20582060 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
20582022 CATGCATGGA
20582032 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
20582061 ATTCCGGTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20584614 original size:27 final size:28
Alignment explanation
Indices: 20584579--20584631 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
20584569 ATTATATTAT
*
20584579 TATATTTTTTGAATT-TTTA-CATTTTA
1 TATATTTTTCGAATTCTTTATCATTTTA
20584605 TATATGTTTTCGAATTCTTTATCATTT
1 TATAT-TTTTCGAATTCTTTATCATTT
20584632 CTTAAAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 9 0.39
28 4 0.17
29 5 0.22
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.62
Consensus pattern (28 bp):
TATATTTTTCGAATTCTTTATCATTTTA
Found at i:20586652 original size:21 final size:22
Alignment explanation
Indices: 20586615--20586658 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
20586605 TTAAGTTTAG
20586615 TTTTATTATGTTAATTA-AATT
1 TTTTATTATGTTAATTATAATT
*
20586636 TTTTATTAAT-TTGATTATAATT
1 TTTTATT-ATGTTAATTATAATT
20586658 T
1 T
20586659 ATTAGTTGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (22 bp):
TTTTATTATGTTAATTATAATT
Found at i:20588600 original size:18 final size:18
Alignment explanation
Indices: 20588579--20588613 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20588569 TAATACTAAT
20588579 ATTAATATTTTAATTAAA
1 ATTAATATTTTAATTAAA
* *
20588597 ATTAATTTTTTTATTAA
1 ATTAATATTTTAATTAA
20588614 TATAATAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTAATATTTTAATTAAA
Found at i:20591549 original size:28 final size:27
Alignment explanation
Indices: 20591495--20591549 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
20591485 TTTAAATATA
* ***
20591495 AACATATTTTTATTTTTATTTTTATTT
1 AACATATTATTATTTTTATTAAAATTT
20591522 AACATATATATTATTTTTATTAAAATTT
1 AACATAT-TATTATTTTTATTAAAATTT
20591550 TAAATCATAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 7 0.30
28 16 0.70
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (27 bp):
AACATATTATTATTTTTATTAAAATTT
Found at i:20592462 original size:2 final size:2
Alignment explanation
Indices: 20592455--20592481 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
20592445 CATGCATGGA
20592455 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
20592482 ATTCCGGTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:20594160 original size:23 final size:23
Alignment explanation
Indices: 20594125--20594168 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
20594115 ATAATGATTT
20594125 AATTAATTCATAT-AATTATTTTA
1 AATTAATTCATATCAA-TATTTTA
20594148 AATTATATT-ATATCAATATTT
1 AATTA-ATTCATATCAATATTT
20594169 ATGTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (23 bp):
AATTAATTCATATCAATATTTTA
Found at i:20595053 original size:27 final size:28
Alignment explanation
Indices: 20595018--20595070 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
20595008 ATTATATTAT
*
20595018 TATATTTTTTGAATT-TTTA-CATTTTA
1 TATATTTTTCGAATTCTTTATCATTTTA
20595044 TATATGTTTTCGAATTCTTTATCATTT
1 TATAT-TTTTCGAATTCTTTATCATTT
20595071 CTTAAAACTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 5 0.22
27 9 0.39
28 4 0.17
29 5 0.22
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.62
Consensus pattern (28 bp):
TATATTTTTCGAATTCTTTATCATTTTA
Found at i:20598059 original size:31 final size:30
Alignment explanation
Indices: 20598024--20598098 Score: 105
Period size: 31 Copynumber: 2.5 Consensus size: 30
20598014 AGTTTCATCC
20598024 AATTATATATTAATTTATTAATTATTAGTT
1 AATTATATATTAATTTATTAATTATTAGTT
* * *
20598054 GAATTATATATTAATTTGTTAATTGTTTGTT
1 -AATTATATATTAATTTATTAATTATTAGTT
*
20598085 AATTATTTATTAAT
1 AATTATATATTAAT
20598099 ATCTTCTTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 13 0.32
31 27 0.68
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (30 bp):
AATTATATATTAATTTATTAATTATTAGTT
Found at i:20600259 original size:27 final size:28
Alignment explanation
Indices: 20600229--20600290 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
20600219 ATTATATTAG
* * *
20600229 TTAATAA-TTTACAATTTAAGTATCACA
1 TTAATAACTTTAAAATTAAAATATCACA
*
20600256 TTAAAAACTTTTAAAATTAAAATATCACA
1 TTAATAAC-TTTAAAATTAAAATATCACA
20600285 TTAATA
1 TTAATA
20600291 TTTTGTTATA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
27 6 0.21
29 22 0.79
ACGTcount: A:0.50, C:0.10, G:0.02, T:0.39
Consensus pattern (28 bp):
TTAATAACTTTAAAATTAAAATATCACA
Found at i:20601826 original size:28 final size:28
Alignment explanation
Indices: 20601770--20601827 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
20601760 TTTATTAAGA
* **
20601770 TTATTTTAAATGTATGATTTATAATTAT
1 TTATTTTAAATGTATCAGATATAATTAT
20601798 TTATTTTAAAT-TATCAGATATAATATAT
1 TTATTTTAAATGTATCAGATATAAT-TAT
20601826 TT
1 TT
20601828 TATCTTGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 10 0.38
28 16 0.62
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.55
Consensus pattern (28 bp):
TTATTTTAAATGTATCAGATATAATTAT
Found at i:20605947 original size:243 final size:244
Alignment explanation
Indices: 20605668--20606175 Score: 776
Period size: 246 Copynumber: 2.1 Consensus size: 244
20605658 AACTTGAGAA
*
20605668 ATTTATATTTATATTTATTTAATTAGTTTCATATCTGCAACTTGAATTGTTTTTAGTATTTTTTA
1 ATTTATATTTATATTTATTTAATTAGTTTCATATCTGCAACTTGAATTGTTTTTAGTATTGTTTA
* *
20605733 ATAATCTTAATTTATTTCAATTAGCAATAGAAATTTTC-T-TTTGT-T-TG-TG-TCATTGACCA
66 ATAATCTTAATTTATTTCAATCAGCAATAGAAATTTTCTTGTTTGTATATGCAGTTCATTGACC-
*
20605792 AATATGTTTTTTTTTTTTTCCTTTTGAGATCAGTATGTAATGTATGATACATGTTACATATAGTC
130 -A-A-G-TTTTTTTTTTTTCCTTTTGAGATCAGTATGTAATGTATGATACATGTTACATAGAGTC
20605857 AAGTGGAGCCAATAAATTGTACAATGTATGATATTGATTTAAAATTTATATAGT
191 AAGTGGAGCCAATAAATTGTACAATGTATGATATTGATTTAAAATTTATATAGT
20605911 ATTTATATTTATATTTATTTAATTAGTTTCATATCTGCAACTTGAATTGTTTTTAGTATTGTTTA
1 ATTTATATTTATATTTATTTAATTAGTTTCATATCTGCAACTTGAATTGTTTTTAGTATTGTTTA
* *
20605976 ATAATCTTAGTTTATTTCAATCAGCACTAGAAATTTTCATTTGTTTGTATATGCAGTTCATTGAC
66 ATAATCTTAATTTATTTCAATCAGCAATAGAAATTTTC--TTGTTTGTATATGCAGTTCATTGAC
* * *
20606041 CAAGTTTTTTTTTTTTCCTTTTGAGATTAGTATGTAATGTGTGATACGTGTTACATAGAGTCAAG
129 CAAGTTTTTTTTTTTTCCTTTTGAGATCAGTATGTAATGTATGATACATGTTACATAGAGTCAAG
* * * *
20606106 TTGAGCCAATAAATTGTACCATGTATGGTATTGATTTAAAATTTATTTAGT
194 TGGAGCCAATAAATTGTACAATGTATGATATTGATTTAAAATTTATATAGT
* *
20606157 ATTTATTTTTACATTTATT
1 ATTTATATTTATATTTATT
20606176 GTCTTCAACT
Statistics
Matches: 242, Mismatches: 15, Indels: 13
0.90 0.06 0.05
Matches are distributed among these distances:
243 99 0.41
246 122 0.50
247 6 0.02
248 2 0.01
249 3 0.01
250 1 0.00
251 9 0.04
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.49
Consensus pattern (244 bp):
ATTTATATTTATATTTATTTAATTAGTTTCATATCTGCAACTTGAATTGTTTTTAGTATTGTTTA
ATAATCTTAATTTATTTCAATCAGCAATAGAAATTTTCTTGTTTGTATATGCAGTTCATTGACCA
AGTTTTTTTTTTTTCCTTTTGAGATCAGTATGTAATGTATGATACATGTTACATAGAGTCAAGTG
GAGCCAATAAATTGTACAATGTATGATATTGATTTAAAATTTATATAGT
Found at i:20607394 original size:2 final size:2
Alignment explanation
Indices: 20607387--20607417 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
20607377 TGTAGATAAT
20607387 TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20607418 AAACACCCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20612772 original size:42 final size:43
Alignment explanation
Indices: 20612675--20612773 Score: 105
Period size: 42 Copynumber: 2.3 Consensus size: 43
20612665 ATATAATTAT
* * *
20612675 ATATATATATTATTTATTTTAAATTATTTTTTAAATATATAAAAG
1 ATATA-ATATTA-TTATTTTAAATTATTTGTGAAATATATAAAAA
* *
20612720 ATATGA-ATTATTATTTTAATTTTATTTGTGAAAT-TA-AAAAA
1 ATATAATATTATTATTTTAA-ATTATTTGTGAAATATATAAAAA
20612761 ATATAATATTATT
1 ATATAATATTATT
20612774 GTATTTGATA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
41 9 0.20
42 17 0.37
43 15 0.33
44 1 0.02
45 4 0.09
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (43 bp):
ATATAATATTATTATTTTAAATTATTTGTGAAATATATAAAAA
Found at i:20613578 original size:19 final size:19
Alignment explanation
Indices: 20613550--20613586 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
20613540 CTTATAGATA
20613550 TATATATATATATCATATC
1 TATATATATATATCATATC
* *
20613569 TATATGTATATATGATAT
1 TATATATATATATCATAT
20613587 TAATCAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (19 bp):
TATATATATATATCATATC
Found at i:20631622 original size:15 final size:17
Alignment explanation
Indices: 20631586--20631622 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
20631576 CTCTCTTCCT
*
20631586 TTTTTTTCTTTTTATCC
1 TTTTTTTCTTTTTATAC
20631603 TTTTTTT-TTTTTATAC
1 TTTTTTTCTTTTTATAC
20631619 TTTT
1 TTTT
20631623 ATATGTAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.63
17 7 0.37
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTTTTTCTTTTTATAC
Found at i:20633012 original size:13 final size:13
Alignment explanation
Indices: 20632994--20633019 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20632984 GACACCAAAA
20632994 TTAATAATAATAT
1 TTAATAATAATAT
20633007 TTAATAATAATAT
1 TTAATAATAATAT
20633020 AATAGATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TTAATAATAATAT
Found at i:20636482 original size:89 final size:89
Alignment explanation
Indices: 20636331--20636510 Score: 342
Period size: 89 Copynumber: 2.0 Consensus size: 89
20636321 GTGTCTGATG
*
20636331 TTAAATCGTATGGCCTAATTTATTCCTTAGAGTGGCATATTTGGTAATGTCACTAAATTTTGCTC
1 TTAAATCGTATGGCCTAATTTATTCCTTAAAGTGGCATATTTGGTAATGTCACTAAATTTTGCTC
20636396 TGTGTATGAGATTTTCAGTTTCCT
66 TGTGTATGAGATTTTCAGTTTCCT
*
20636420 TTAAATTGTATGGCCTAATTTATTCCTTAAAGTGGCATATTTGGTAATGTCACTAAATTTTGCTC
1 TTAAATCGTATGGCCTAATTTATTCCTTAAAGTGGCATATTTGGTAATGTCACTAAATTTTGCTC
20636485 TGTGTATGAGATTTTCAGTTTCCT
66 TGTGTATGAGATTTTCAGTTTCCT
20636509 TT
1 TT
20636511 GCAGAACTTT
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.24, C:0.14, G:0.17, T:0.45
Consensus pattern (89 bp):
TTAAATCGTATGGCCTAATTTATTCCTTAAAGTGGCATATTTGGTAATGTCACTAAATTTTGCTC
TGTGTATGAGATTTTCAGTTTCCT
Found at i:20641966 original size:2 final size:2
Alignment explanation
Indices: 20641953--20641990 Score: 58
Period size: 2 Copynumber: 18.5 Consensus size: 2
20641943 CCACAGGTAC
*
20641953 CT CT CAT CT CT CT CT CT CT CT CA CT CT CT CT CT CT CT C
1 CT CT C-T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
20641991 ACACACACAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
2 31 0.94
3 2 0.06
ACGTcount: A:0.05, C:0.50, G:0.00, T:0.45
Consensus pattern (2 bp):
CT
Found at i:20653299 original size:6 final size:6
Alignment explanation
Indices: 20653288--20653317 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
20653278 AGCAGAGCAG
*
20653288 CCACCT CCACCT CCACCT CCACCA CCACCT
1 CCACCT CCACCT CCACCT CCACCT CCACCT
20653318 TCTGGACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.20, C:0.67, G:0.00, T:0.13
Consensus pattern (6 bp):
CCACCT
Found at i:20662742 original size:28 final size:27
Alignment explanation
Indices: 20662693--20662777 Score: 80
Period size: 28 Copynumber: 3.0 Consensus size: 27
20662683 TGAATAATTC
*
20662693 TTAAATTATAATAAATTTTTAATGTAATAT
1 TTAAATTAT-A-AAATTATTAAT-TAATAT
* * *
20662723 TTAAATTTTAAAATTGTTAATATGATAT
1 TTAAATTATAAAATTATTAAT-TAATAT
* *
20662751 TTGAATTATAAATTTATTAATTAATAT
1 TTAAATTATAAAATTATTAATTAATAT
20662778 AATATTTATT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
27 5 0.11
28 32 0.70
29 1 0.02
30 8 0.17
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.51
Consensus pattern (27 bp):
TTAAATTATAAAATTATTAATTAATAT
Found at i:20662792 original size:18 final size:19
Alignment explanation
Indices: 20662757--20662798 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
20662747 ATATTTGAAT
20662757 TATAA-ATTTATTAATTAA
1 TATAATATTTATTAATTAA
*
20662775 TATAATATTTATT-TTTAA
1 TATAATATTTATTAATTAA
20662793 TATAAT
1 TATAAT
20662799 TAATTTCACA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 15 0.68
19 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TATAATATTTATTAATTAA
Found at i:20663404 original size:23 final size:23
Alignment explanation
Indices: 20663378--20663425 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
20663368 AAATGATAAG
*
20663378 AATTTAAATAATTATTTTAT-TTT
1 AATTCAAATAATT-TTTTATATTT
20663401 AATTCAAATAATTTTTTATATTT
1 AATTCAAATAATTTTTTATATTT
20663424 AA
1 AA
20663426 ATAAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (23 bp):
AATTCAAATAATTTTTTATATTT
Found at i:20663555 original size:20 final size:20
Alignment explanation
Indices: 20663530--20663568 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
20663520 TCATAGCACT
20663530 AAATTCATA-TCCAAGTCTTC
1 AAATTCA-AGTCCAAGTCTTC
20663550 AAATTCAAGTCCAAGTCTT
1 AAATTCAAGTCCAAGTCTT
20663569 GGCTCAAATC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (20 bp):
AAATTCAAGTCCAAGTCTTC
Found at i:20663782 original size:15 final size:16
Alignment explanation
Indices: 20663752--20663789 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
20663742 AAAATTATGC
*
20663752 ATTTAAATTATTTTAA
1 ATTTAAAATATTTTAA
20663768 ATTTAAAAT-TTTTAA
1 ATTTAAAATATTTTAA
20663783 ATATTAA
1 AT-TTAA
20663790 TTTCAATCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTTAAAATATTTTAA
Found at i:20669513 original size:2 final size:2
Alignment explanation
Indices: 20669506--20669543 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
20669496 AGCAAAAATT
* *
20669506 TA TA TA TA CA TG TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20669544 GAGAGAGAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:20669548 original size:2 final size:2
Alignment explanation
Indices: 20669543--20669585 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
20669533 ATATATATAT
20669543 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
20669585 A
1 A
20669586 ACAAAAAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:20670086 original size:33 final size:33
Alignment explanation
Indices: 20670009--20670095 Score: 95
Period size: 33 Copynumber: 2.6 Consensus size: 33
20669999 AAACGTCACA
* * *
20670009 ATATTAACAGTGTTTGTATTTGAAAATATCGTT
1 ATATTAACGGTATTTGTATCTGAAAATATCGTT
* *
20670042 ATTTTAACGGTATTTGTATCTGAAAATA-CTTTT
1 ATATTAACGGTATTTGTATCTGAAAATATC-GTT
* *
20670075 ATATTAGCGGTATTTATATCT
1 ATATTAACGGTATTTGTATCT
20670096 TTGAGACTCC
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
32 1 0.02
33 44 0.98
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.47
Consensus pattern (33 bp):
ATATTAACGGTATTTGTATCTGAAAATATCGTT
Found at i:20676995 original size:35 final size:35
Alignment explanation
Indices: 20676956--20677025 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
20676946 TGTGCTCTTG
20676956 ACTTAATCTTGACTTTTACATCTAACTCTTATCCA
1 ACTTAATCTTGACTTTTACATCTAACTCTTATCCA
20676991 ACTTAATCTTGACTTTTACATCTAACTCTTATCCA
1 ACTTAATCTTGACTTTTACATCTAACTCTTATCCA
20677026 TTTAGTACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.29, C:0.26, G:0.03, T:0.43
Consensus pattern (35 bp):
ACTTAATCTTGACTTTTACATCTAACTCTTATCCA
Found at i:20677332 original size:17 final size:17
Alignment explanation
Indices: 20677312--20677344 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
20677302 AAAAAATCAT
20677312 GAATTGTAAAAGCTGAA
1 GAATTGTAAAAGCTGAA
20677329 GAATTGTAAAAGCTGA
1 GAATTGTAAAAGCTGA
20677345 TGAAATTTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.45, C:0.06, G:0.24, T:0.24
Consensus pattern (17 bp):
GAATTGTAAAAGCTGAA
Found at i:20680442 original size:306 final size:306
Alignment explanation
Indices: 20679872--20680462 Score: 712
Period size: 306 Copynumber: 1.9 Consensus size: 306
20679862 AGCAAAAAAA
* * * *
20679872 GCCTTGAATCATCCCTAACAAACTGTTATTGAAAATGTTTTTAACCAAAATCACCTTCAATAATC
1 GCCTTGAATAATCCCTAACAAAATGTTATTGAAAATGTTTTCAACAAAAATCACCTTCAATAATC
* * ** *
20679937 CTACATACAAAAATATTGTGTGGAATATTAAAGGTGTTTTGGGCAAAAAACACATTCAAGAATCC
66 CAACATACAAAAATATTGTGTGAAATATTAAAGACGTTTTGGCCAAAAAACACATTCAAGAATCC
* * * *
20680002 GTTTTAACTTTTTTGTATGGATTATTGAAGGCGTTTTAAAAAAAATATCGCATTCAATAATACCA
131 GTTTTAACTTTTGTGTATAGATTATTGAAGGCATTTTAAAAAAAATATCACATTCAATAATACCA
* * * *
20680067 AGTAAAAATTAATTGAATGGATTATTGAAGGTGCTTTCGGCCAAAAACGCATTCAATAATTCATT
196 ACTAAAAATTAATTGAATGGATTATTAAAGGTGCTTTCGCCCAAAAACGCATTCAAGAATTCATT
*
20680132 TCATA-TTTTGGTATGGATTATTAAAGACGTTTTTCTGTCAGAAAT
261 TCATATTTTTGCTATGGATTATTAAAGACGTTTTTCTGTCAGAAAT
*
20680177 GCCTTGAATAATCCCTAACAAAATGTTATTGAAAGCAT-TTTTCAA-AAAAATCACTTTCAATAA
1 GCCTTGAATAATCCCTAACAAAATGTTATTGAAA--ATGTTTTCAACAAAAATCACCTTCAATAA
* ** ** * *
20680240 TCCAACCATTCAAATTTATTGTGTGAAATATTAAAGACGTTTTGAGCCAAAAAATGCCTTTAAGA
64 TCCAA-CATACAAAAATATTGTGTGAAATATTAAAGACGTTTTG-GCCAAAAAACACATTCAAGA
* * ** * * *
20680305 ATCCGTTTTAACTTTTGTGTATAGATTGTTGAAGGTATTTTTGACAAAA-ATCACCTTTAATAAT
127 ATCCGTTTTAACTTTTGTGTATAGATTATTGAAGGCATTTTAAAAAAAATATCACATTCAATAAT
* * * *
20680369 -CCATACTAAAAATTTATTGATTGGATTATTAAAGGTGAGTTT-GCCCAAAAATG-ACTTCAAGA
192 ACCA-ACTAAAAATTAATTGAATGGATTATTAAAGGTG-CTTTCGCCCAAAAACGCA-TTCAAGA
*
20680431 A-TCGATTTCATATTTTTTCTATGGATTATTAA
254 ATTC-ATTTCATATTTTTGCTATGGATTATTAA
20680463 GGGTGTTTTT
Statistics
Matches: 239, Mismatches: 38, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
305 58 0.24
306 103 0.43
307 78 0.33
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.36
Consensus pattern (306 bp):
GCCTTGAATAATCCCTAACAAAATGTTATTGAAAATGTTTTCAACAAAAATCACCTTCAATAATC
CAACATACAAAAATATTGTGTGAAATATTAAAGACGTTTTGGCCAAAAAACACATTCAAGAATCC
GTTTTAACTTTTGTGTATAGATTATTGAAGGCATTTTAAAAAAAATATCACATTCAATAATACCA
ACTAAAAATTAATTGAATGGATTATTAAAGGTGCTTTCGCCCAAAAACGCATTCAAGAATTCATT
TCATATTTTTGCTATGGATTATTAAAGACGTTTTTCTGTCAGAAAT
Found at i:20685121 original size:29 final size:30
Alignment explanation
Indices: 20685079--20685141 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
20685069 CTTTAAGAAC
20685079 TTAATACTTTATTAT-AATCAATCAAAGTT
1 TTAATACTTTATTATGAATCAATCAAAGTT
* * * *
20685108 TTAATATTTTATTATGATTTAATCAAATTT
1 TTAATACTTTATTATGAATCAATCAAAGTT
20685138 TTAA
1 TTAA
20685142 ATAAATAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 14 0.48
30 15 0.52
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (30 bp):
TTAATACTTTATTATGAATCAATCAAAGTT
Found at i:20686216 original size:3 final size:3
Alignment explanation
Indices: 20686210--20686238 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
20686200 GCAACAACAA
20686210 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
20686239 ACGCAGAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:20696179 original size:22 final size:22
Alignment explanation
Indices: 20696153--20696196 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
20696143 TGTATATTTA
*
20696153 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
20696175 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
20696197 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:20700065 original size:22 final size:22
Alignment explanation
Indices: 20700039--20700082 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
20700029 TGTATATTTA
*
20700039 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
20700061 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
20700083 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:20702513 original size:12 final size:12
Alignment explanation
Indices: 20702496--20702521 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
20702486 AAGTTGGTAA
20702496 CAAACAAGGTTC
1 CAAACAAGGTTC
20702508 CAAACAAGGTTC
1 CAAACAAGGTTC
20702520 CA
1 CA
20702522 GCCTTATCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.27, G:0.15, T:0.15
Consensus pattern (12 bp):
CAAACAAGGTTC
Found at i:20703600 original size:22 final size:22
Alignment explanation
Indices: 20703574--20703618 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
20703564 CTCAAAATTA
20703574 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
20703596 ATAAAATATTATTTTTTAAAAT
1 ATAAAATATTATTTTTTAAAAT
20703618 A
1 A
20703619 AATATTTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATAAAATATTATTTTTTAAAAT
Found at i:20703619 original size:20 final size:21
Alignment explanation
Indices: 20703573--20703624 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 21
20703563 ACTCAAAATT
20703573 AATAAAATATTATTTTTTAAA
1 AATAAAATATTATTTTTTAAA
20703594 ATATAAAATATTATTTTTT-AA
1 A-ATAAAATATTATTTTTTAAA
20703615 AAT-AAATATT
1 AATAAAATATT
20703625 TAAAAATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.23
20 2 0.07
21 4 0.13
22 17 0.57
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AATAAAATATTATTTTTTAAA
Found at i:20718365 original size:22 final size:22
Alignment explanation
Indices: 20718337--20718381 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
20718327 AAATAATCTC
20718337 TTAGTGCTATTTATGACGACAG
1 TTAGTGCTATTTATGACGACAG
*
20718359 TTAGTGCTATTTATGAGGACAG
1 TTAGTGCTATTTATGACGACAG
20718381 T
1 T
20718382 CATATGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (22 bp):
TTAGTGCTATTTATGACGACAG
Found at i:20718983 original size:17 final size:16
Alignment explanation
Indices: 20718961--20719014 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 16
20718951 TATTTATTAG
20718961 TTTATTATATAATAAA
1 TTTATTATATAATAAA
*
20718977 TTTTATT-TATTAATTAA
1 -TTTATTATA-TAATAAA
20718994 TTTATTATATAATAAAA
1 TTTATTATATAAT-AAA
20719011 TTTA
1 TTTA
20719015 CTTTTAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 12 0.38
17 20 0.62
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TTTATTATATAATAAA
Found at i:20718987 original size:33 final size:33
Alignment explanation
Indices: 20718950--20719042 Score: 115
Period size: 33 Copynumber: 3.0 Consensus size: 33
20718940 TAATTAAAAA
* * *
20718950 TTATTTATTAGTTTATTATATAATAAATTTTAT
1 TTATTAATTAATTTATTATATAATAAAATTTAT
*
20718983 TTATTAATTAATTTATTATATAATAAAATTTAC
1 TTATTAATTAATTTATTATATAATAAAATTTAT
20719016 TT-TTAATTAA-TTA--ATA-AATAAAATTTA
1 TTATTAATTAATTTATTATATAATAAAATTTA
20719043 CTTTTATTTT
Statistics
Matches: 56, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
28 11 0.20
29 3 0.05
31 3 0.05
32 8 0.14
33 31 0.55
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (33 bp):
TTATTAATTAATTTATTATATAATAAAATTTAT
Found at i:20719022 original size:28 final size:28
Alignment explanation
Indices: 20718990--20719053 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
20718980 TATTTATTAA
20718990 TTAATTTATT-ATATAATAAAATTTACTT
1 TTAATTTATTAATA-AATAAAATTTACTT
*
20719018 TTAATTAATTAATAAATAAAATTTACTT
1 TTAATTTATTAATAAATAAAATTTACTT
*
20719046 TTATTTTA
1 TTAATTTA
20719054 AATTAACAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
28 29 0.91
29 3 0.09
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (28 bp):
TTAATTTATTAATAAATAAAATTTACTT
Found at i:20719024 original size:24 final size:28
Alignment explanation
Indices: 20718971--20719048 Score: 93
Period size: 28 Copynumber: 2.6 Consensus size: 28
20718961 TTTATTATAT
* *
20718971 AATAAATTTTATTTATTAATTAATTTATTATA
1 AATAAAATTTACTT-TTAATTAA-TTA--ATA
20719003 TAATAAAATTTACTTTTAATTAATTAATA
1 -AATAAAATTTACTTTTAATTAATTAATA
20719032 AATAAAATTTACTTTTA
1 AATAAAATTTACTTTTA
20719049 TTTTAAATTA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
28 17 0.40
29 3 0.07
31 3 0.07
32 8 0.19
33 12 0.28
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (28 bp):
AATAAAATTTACTTTTAATTAATTAATA
Found at i:20724859 original size:75 final size:75
Alignment explanation
Indices: 20724727--20724877 Score: 257
Period size: 75 Copynumber: 2.0 Consensus size: 75
20724717 TTTATTACAT
* * * *
20724727 GCAGTTTTTTATGTAACACTTATAATTTTCTGGTGGCGTGATGTATTGGAAGTAGAGACATGGAT
1 GCAGTTTTTTATGTAACACTTATAATTTTCTGGTGGCATGATGTATTAGAAGCAGAGACACGGAT
20724792 TGTAATTCAC
66 TGTAATTCAC
*
20724802 GCAGTTTTTTATGTAACACTTATGATTTTCTGGTGGCATGATGTATTAGAAGCAGAGACACGGAT
1 GCAGTTTTTTATGTAACACTTATAATTTTCTGGTGGCATGATGTATTAGAAGCAGAGACACGGAT
20724867 TGTAATTCAC
66 TGTAATTCAC
20724877 G
1 G
20724878 TATGCGGGAC
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (75 bp):
GCAGTTTTTTATGTAACACTTATAATTTTCTGGTGGCATGATGTATTAGAAGCAGAGACACGGAT
TGTAATTCAC
Found at i:20728528 original size:2 final size:2
Alignment explanation
Indices: 20728516--20728558 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
20728506 TCTCAAGTAC
*
20728516 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
20728558 T
1 T
20728559 GCCGGTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:20728666 original size:2 final size:2
Alignment explanation
Indices: 20728659--20728686 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
20728649 ATGAAGGCAA
20728659 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20728687 GCCGGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20728703 original size:128 final size:128
Alignment explanation
Indices: 20728531--20728792 Score: 506
Period size: 128 Copynumber: 2.0 Consensus size: 128
20728521 ATATATATAT
20728531 ATATATATATATATATATATATATATATGCCGGTTTAAACCCGCCGTGTCTAGAGCGTTGAACTT
1 ATATATATATATATATATATATATATATGCCGGTTTAAACCCGCCGTGTCTAGAGCGTTGAACTT
*
20728596 GAACGTCCAGCATTAAACAGGTATGCAGATTTTCACTTGATTTTTTAAAATGAATGAAGGCAA
66 GAACGTCCAACATTAAACAGGTATGCAGATTTTCACTTGATTTTTTAAAATGAATGAAGGCAA
20728659 ATATATATATATATATATATATATATATGCCGGTTTAAACCCGCCGTGTCTAGAGCGTTGAACTT
1 ATATATATATATATATATATATATATATGCCGGTTTAAACCCGCCGTGTCTAGAGCGTTGAACTT
*
20728724 GAACGTCCAACATTAAACAGTTATGCAGATTTTCACTTGATTTTTTAAAATGAATGAAGGCAA
66 GAACGTCCAACATTAAACAGGTATGCAGATTTTCACTTGATTTTTTAAAATGAATGAAGGCAA
20728787 ATATAT
1 ATATAT
20728793 GATAAGTAAC
Statistics
Matches: 132, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
128 132 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (128 bp):
ATATATATATATATATATATATATATATGCCGGTTTAAACCCGCCGTGTCTAGAGCGTTGAACTT
GAACGTCCAACATTAAACAGGTATGCAGATTTTCACTTGATTTTTTAAAATGAATGAAGGCAA
Found at i:20730849 original size:13 final size:12
Alignment explanation
Indices: 20730828--20730879 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
20730818 TTTTTTTATC
20730828 AAATAAATAAAA
1 AAATAAATAAAA
*
20730840 AAAGTAAAT-ACA
1 AAA-TAAATAAAA
*
20730852 AAATAATTAAAA
1 AAATAAATAAAA
* *
20730864 AAACAAAGAAAA
1 AAATAAATAAAA
20730876 AAAT
1 AAAT
20730880 CAAGTAATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 4
0.74 0.17 0.10
Matches are distributed among these distances:
11 4 0.13
12 22 0.71
13 5 0.16
ACGTcount: A:0.77, C:0.04, G:0.04, T:0.15
Consensus pattern (12 bp):
AAATAAATAAAA
Found at i:20731196 original size:16 final size:17
Alignment explanation
Indices: 20731167--20731198 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
20731157 TATCAAAAGG
20731167 GAAAAAAATATTTAAAT
1 GAAAAAAATATTTAAAT
20731184 GAAAAAAAT-TTTAAA
1 GAAAAAAATATTTAAA
20731199 AAATAAGTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (17 bp):
GAAAAAAATATTTAAAT
Done.