Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 119 of 127
Found at i:22866807 original size:10 final size:11
Alignment explanation
Indices: 22866789--22866822 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22866779 ATTAAATAAT
22866789 TATTTATTAAA
1 TATTTATTAAA
*
22866800 TA-TTATTACA
1 TATTTATTAAA
22866810 TATTTATTAAA
1 TATTTATTAAA
22866821 TA
1 TA
22866823 AAAGATAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (11 bp):
TATTTATTAAA
Found at i:22867638 original size:40 final size:41
Alignment explanation
Indices: 22867594--22867680 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
22867584 ACGTGCTTAT
*
22867594 TATTATCGACGATGAACATTATTCTAATTTGTCA-ATTTTA
1 TATTATCGACGATGAACATTATTCTAATTAGTCACATTTTA
* ** *
22867634 TATTATTGTTGATGAACATTATTTTAATTAGTCACATTTTA
1 TATTATCGACGATGAACATTATTCTAATTAGTCACATTTTA
*
22867675 TGTTAT
1 TATTAT
22867681 TGTTGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 29 0.73
41 11 0.28
ACGTcount: A:0.31, C:0.09, G:0.10, T:0.49
Consensus pattern (41 bp):
TATTATCGACGATGAACATTATTCTAATTAGTCACATTTTA
Found at i:22867685 original size:41 final size:40
Alignment explanation
Indices: 22867604--22867686 Score: 130
Period size: 40 Copynumber: 2.0 Consensus size: 40
22867594 TATTATCGAC
*
22867604 GATGAACATTATTCTAATTTGTCAATTTTATATTATTGTT
1 GATGAACATTATTCTAATTAGTCAATTTTATATTATTGTT
* *
22867644 GATGAACATTATTTTAATTAGTCACATTTTATGTTATTGTT
1 GATGAACATTATTCTAATTAGTCA-ATTTTATATTATTGTT
22867685 GA
1 GA
22867687 AAAATTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
40 22 0.56
41 17 0.44
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (40 bp):
GATGAACATTATTCTAATTAGTCAATTTTATATTATTGTT
Found at i:22868603 original size:14 final size:14
Alignment explanation
Indices: 22868584--22868630 Score: 58
Period size: 14 Copynumber: 3.2 Consensus size: 14
22868574 TTACATAAAC
22868584 ATGTATATATTTAT
1 ATGTATATATTTAT
22868598 ATGTATATATATATAT
1 ATGTATATAT-T-TAT
* *
22868614 ATGCATATATATAT
1 ATGTATATATTTAT
22868628 ATG
1 ATG
22868631 AAATTACGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 16 0.55
15 1 0.03
16 12 0.41
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (14 bp):
ATGTATATATTTAT
Found at i:22868606 original size:2 final size:2
Alignment explanation
Indices: 22868587--22868629 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
22868577 CATAAACATG
* * * *
22868587 TA TA TA TT TA TA TG TA TA TA TA TA TA TA TG CA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22868629 T
1 T
22868630 GAAATTACGT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22868608 original size:16 final size:16
Alignment explanation
Indices: 22868587--22868629 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
22868577 CATAAACATG
* *
22868587 TATATATTTATATGTA
1 TATATATATATATGCA
22868603 TATATATATATATGCA
1 TATATATATATATGCA
22868619 TATATATATAT
1 TATATATATAT
22868630 GAAATTACGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (16 bp):
TATATATATATATGCA
Found at i:22880158 original size:10 final size:10
Alignment explanation
Indices: 22880143--22880174 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
22880133 ACCCCAAACC
22880143 ATTTATATAT
1 ATTTATATAT
22880153 ATTTATATAT
1 ATTTATATAT
22880163 ATTTATATAT
1 ATTTATATAT
22880173 AT
1 AT
22880175 GACATCACGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
ATTTATATAT
Found at i:22889669 original size:30 final size:31
Alignment explanation
Indices: 22889635--22889699 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
22889625 GACAGATCTA
*
22889635 ATATCACTTG-TAGGGATCATGATAATTTTG
1 ATATCACTTGATAGGAATCATGATAATTTTG
*
22889665 ATATCACTTGATATGAATCATGATAATTTTG
1 ATATCACTTGATAGGAATCATGATAATTTTG
22889696 ATAT
1 ATAT
22889700 TATTTGTTAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 10 0.31
31 22 0.69
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (31 bp):
ATATCACTTGATAGGAATCATGATAATTTTG
Found at i:22890099 original size:44 final size:44
Alignment explanation
Indices: 22890034--22890123 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 44
22890024 ATTTATAAAG
* *
22890034 ATTCAAATATACACACCTATAAGACGT-AAATCTCTAGTAGTCTT
1 ATTCAAACATACACACATATAAGA-GTAAAATCTCTAGTAGTCTT
* *
22890078 ATTCAAACATACAGACATATAAGATTAAAATCTCTAGTAGTCTT
1 ATTCAAACATACACACATATAAGAGTAAAATCTCTAGTAGTCTT
22890122 AT
1 AT
22890124 AGAATGTCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.02
44 40 0.98
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (44 bp):
ATTCAAACATACACACATATAAGAGTAAAATCTCTAGTAGTCTT
Found at i:22891005 original size:30 final size:30
Alignment explanation
Indices: 22890969--22891028 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
22890959 ATTTATTTTA
*
22890969 CTTATAAAATTTAATTCAATCATTTTAATC
1 CTTATAAAATTTAATCCAATCATTTTAATC
22890999 CTTATAAAATTTAATCCAATCATTTTAATC
1 CTTATAAAATTTAATCCAATCATTTTAATC
22891029 AAAATTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.45
Consensus pattern (30 bp):
CTTATAAAATTTAATCCAATCATTTTAATC
Found at i:22891032 original size:25 final size:27
Alignment explanation
Indices: 22890973--22891037 Score: 80
Period size: 30 Copynumber: 2.4 Consensus size: 27
22890963 ATTTTACTTA
*
22890973 TAAAATTTAATTCAATCATTTTAATCC
1 TAAAATTTAATCCAATCATTTTAATCC
22891000 TTATAAAATTTAATCCAATCATTTTAAT-C
1 ---TAAAATTTAATCCAATCATTTTAATCC
22891029 -AAAATTTAA
1 TAAAATTTAA
22891038 AATAACTATC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
25 9 0.26
29 1 0.03
30 24 0.71
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.43
Consensus pattern (27 bp):
TAAAATTTAATCCAATCATTTTAATCC
Found at i:22905084 original size:2 final size:2
Alignment explanation
Indices: 22905077--22905120 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
22905067 ACCAATGGTG
22905077 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22905119 TA
1 TA
22905121 AAGCAAGGGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22915566 original size:2 final size:2
Alignment explanation
Indices: 22915559--22915587 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22915549 TGTCATTTAC
22915559 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22915588 TTTTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22916662 original size:2 final size:2
Alignment explanation
Indices: 22916655--22916710 Score: 87
Period size: 2 Copynumber: 28.0 Consensus size: 2
22916645 TATTAATCTA
*
22916655 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT CAT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT
22916698 AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT
22916711 TGCAATATAC
Statistics
Matches: 50, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
1 1 0.02
2 47 0.94
3 2 0.04
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22917239 original size:19 final size:21
Alignment explanation
Indices: 22917215--22917254 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
22917205 TAAATGAATA
22917215 GAAAAAAA-TATTTTT-TAAT
1 GAAAAAAATTATTTTTATAAT
22917234 GAAAAAAATTATTTTTATAAT
1 GAAAAAAATTATTTTTATAAT
22917255 TCTTAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 7 0.37
21 4 0.21
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (21 bp):
GAAAAAAATTATTTTTATAAT
Found at i:22917241 original size:20 final size:21
Alignment explanation
Indices: 22917216--22917254 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22917206 AAATGAATAG
22917216 AAAAAAATATTTTT-TAATGA
1 AAAAAAATATTTTTATAATGA
*
22917236 AAAAAATTATTTTTATAAT
1 AAAAAAATATTTTTATAAT
22917255 TCTTAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.44
Consensus pattern (21 bp):
AAAAAAATATTTTTATAATGA
Found at i:22920600 original size:27 final size:27
Alignment explanation
Indices: 22920549--22920599 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
22920539 AATCTCTCTG
22920549 CCCTATTACATACTTAACTTAAAAATA
1 CCCTATTACATACTTAACTTAAAAATA
22920576 CCCTATTACATACTTAA-TTAAAAA
1 CCCTATTACATACTTAACTTAAAAA
22920600 AAATATATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.45, C:0.22, G:0.00, T:0.33
Consensus pattern (27 bp):
CCCTATTACATACTTAACTTAAAAATA
Found at i:22920608 original size:26 final size:27
Alignment explanation
Indices: 22920552--22920611 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 27
22920542 CTCTCTGCCC
* * *
22920552 TATTACATACTTAACTTAAAAATACCC
1 TATTACATACTTAACTTAAAAAAAACA
*
22920579 TATTACATACTTAA-TTAAAAAAAATA
1 TATTACATACTTAACTTAAAAAAAACA
22920605 TATTACA
1 TATTACA
22920612 CCTCTAAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 15 0.52
27 14 0.48
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (27 bp):
TATTACATACTTAACTTAAAAAAAACA
Found at i:22925533 original size:66 final size:69
Alignment explanation
Indices: 22925451--22925587 Score: 217
Period size: 66 Copynumber: 2.0 Consensus size: 69
22925441 ATTTCTTGTG
* *
22925451 TCAGAACTCCCAACTTTTATGTTAAAAAATAAAACAC-GGT-C-AGAACTTTATGCAGCTATGCC
1 TCAGAACTCCCAACTTTTATGTTAAAAAATAAAACACTGGTACAAGAACTTTAAGCAGATATGCC
22925513 AAAA
66 AAAA
* *
22925517 TCAGAACTCCCAACTTTTATGTTAAAAAATAAACCACTGTTACAAGAACTTTAAGCAGATATGCC
1 TCAGAACTCCCAACTTTTATGTTAAAAAATAAAACACTGGTACAAGAACTTTAAGCAGATATGCC
22925582 AAAA
66 AAAA
22925586 TC
1 TC
22925588 CTAGCAACTT
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
66 36 0.56
67 2 0.03
68 1 0.02
69 25 0.39
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (69 bp):
TCAGAACTCCCAACTTTTATGTTAAAAAATAAAACACTGGTACAAGAACTTTAAGCAGATATGCC
AAAA
Found at i:22929780 original size:41 final size:41
Alignment explanation
Indices: 22929723--22929802 Score: 133
Period size: 41 Copynumber: 2.0 Consensus size: 41
22929713 ATTTGCTGAA
* *
22929723 ACTTAACTAGATTCAACCTAATGCTATTCCTAACTTTCCTC
1 ACTTAACTAGATTCAACCTAATGATATTCCCAACTTTCCTC
*
22929764 ACTTAACTAGATTCAACCTATTGATATTCCCAACTTTCC
1 ACTTAACTAGATTCAACCTAATGATATTCCCAACTTTCC
22929803 CCATATCAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.30, C:0.29, G:0.05, T:0.36
Consensus pattern (41 bp):
ACTTAACTAGATTCAACCTAATGATATTCCCAACTTTCCTC
Found at i:22934973 original size:16 final size:16
Alignment explanation
Indices: 22934954--22934986 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
22934944 TTTTTGAAAA
22934954 AAAATTATTTATGAAT
1 AAAATTATTTATGAAT
*
22934970 AAAATTATTTATTAAT
1 AAAATTATTTATGAAT
22934986 A
1 A
22934987 CTTTTGAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
AAAATTATTTATGAAT
Found at i:22935148 original size:24 final size:22
Alignment explanation
Indices: 22935119--22935426 Score: 103
Period size: 21 Copynumber: 13.8 Consensus size: 22
22935109 ATTATACTAA
* *
22935119 TATATTAATTTTAATAAATATTAT
1 TATATTAA-TTAAAT-AATAATAT
22935143 TATATTAA-TAAATAATAATAT
1 TATATTAATTAAATAATAATAT
*
22935164 TATATTAA-TAAATCA-AATAT
1 TATATTAATTAAATAATAATAT
* * * *
22935184 TA-ATAAATATTATTAA-AATAA
1 TATATTAAT-TAAATAATAATAT
*
22935205 TATATTAA-TATATTAATAA-AT
1 TATATTAATTA-AATAATAATAT
* *
22935226 AATATT-A-TAATA-AATAACAT
1 TATATTAATTAA-ATAATAATAT
* * *
22935246 TATATTAATA-AATGATATTAT
1 TATATTAATTAAATAATAATAT
*
22935267 TATATTAA-TAAATAATATAATAAA
1 TATATTAATTAAAT-A-ATAAT-AT
*
22935291 TATTATTAATTAATTAATAATA-
1 TA-TATTAATTAAATAATAATAT
* *
22935313 TATAATATATATAAATGATTATAATAAA
1 TATATTA-AT-TAAAT-A--ATAAT-AT
*
22935341 TATTATTAATTTAATTAATAA-A-
1 TA-TATTAA-TTAAATAATAATAT
* *
22935363 TATATTAA-TAATATATTAATAAA
1 TATATTAATTAA-ATAATAAT-AT
*
22935386 TATTATTAATT-AATAATATATTAA
1 TA-TATTAATTAAATAATA-A-TAT
22935410 TATATTAA-TAAATAATA
1 TATATTAATTAAATAATA
22935427 TAAAGAATAA
Statistics
Matches: 220, Mismatches: 30, Indels: 69
0.69 0.09 0.22
Matches are distributed among these distances:
19 13 0.06
20 24 0.11
21 70 0.32
22 18 0.08
23 30 0.14
24 29 0.13
25 13 0.06
26 9 0.04
27 2 0.01
28 7 0.03
29 5 0.02
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.44
Consensus pattern (22 bp):
TATATTAATTAAATAATAATAT
Found at i:22935191 original size:36 final size:35
Alignment explanation
Indices: 22935052--22935420 Score: 110
Period size: 33 Copynumber: 10.2 Consensus size: 35
22935042 ATAATATATT
*
22935052 AATAACTAATATTATTTTAATAAATAAAATATTAATA
1 AATAA-TAATATTATATTAATAAAT-AAATATTAATA
* ** * * *
22935089 AATAATATTACAAAATAAATATTATACTAATATATTAATTTT
1 AATAATAATATTATATTAATA--A-A-TAA-ATATTAA--TA
*
22935131 AATAAATATTATTATATTAATAAATAATAATATT-AT-
1 AAT-AATAATATTATATTAATAAAT-A-AATATTAATA
* * *
22935167 ATTAATAA-ATCAAATATTAATAAAT-ATTATT-A-A
1 AATAATAATAT--TATATTAATAAATAAATATTAATA
*
22935200 AATAATATATTAATATATTAATAAAT-AATATT-AT-
1 AATAATA-A-TATTATATTAATAAATAAATATTAATA
* * *
22935234 AATAAATAACATTATATTAATAAAT-GATATTATTA
1 AAT-AATAATATTATATTAATAAATAAATATTAATA
* * *
22935269 TATTAATAA-ATAATA-TAATAAAT-ATTATTAATTA
1 -AATAATAATATTATATTAATAAATAAATATTAA-TA
* * *
22935303 ATTAATAATA-TATAAT-ATATATAAATGATTATAATA
1 AATAATAATATTATATTAATAAATAAAT-A-T-TAATA
22935339 AATATTATTAAT-TTA-ATTAATAAAT--ATATTAATA
1 AATA--A-TAATATTATATTAATAAATAAATATTAATA
* * *
22935373 ATATATTAATAAATATTATTAATTAATAATATATTAATA
1 A-ATAATAAT-ATTA-TATTAATAAATAA-ATATTAATA
*
22935412 TATTAATAA
1 -AATAATAA
22935421 ATAATATAAA
Statistics
Matches: 251, Mismatches: 39, Indels: 82
0.67 0.10 0.22
Matches are distributed among these distances:
32 4 0.02
33 60 0.24
34 45 0.18
35 18 0.07
36 43 0.17
37 11 0.04
38 4 0.02
39 30 0.12
40 16 0.06
41 2 0.01
42 4 0.02
43 14 0.06
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (35 bp):
AATAATAATATTATATTAATAAATAAATATTAATA
Found at i:22935288 original size:33 final size:33
Alignment explanation
Indices: 22935144--22935411 Score: 174
Period size: 33 Copynumber: 8.3 Consensus size: 33
22935134 AAATATTATT
*
22935144 ATATTAATAAATAATAATATTATATTAATAAATCAA
1 ATATTAATAAAT-ATATTATTATATTAATAAAT--A
** * *
22935180 ATATTAATAAATATTATTAAAATAATATATTAAT-
1 ATATTAATAAATA-TATTATTATATTA-ATAAATA
* *
22935214 ATATTAATAAATA-A-TATTATAATAAATAACATT
1 ATATTAATAAATATATTATTAT-ATTAATAA-ATA
22935247 ATATTAATAAATGATATTATTATATTAATAAATA
1 ATATTAATAAAT-ATATTATTATATTAATAAATA
*
22935281 ATA-TAAT-AA-ATATTATTA-ATTAATTAATA
1 ATATTAATAAATATATTATTATATTAATAAATA
* * *
22935310 ATATATAATATATATA-AATGAT-TATAATAAATA
1 ATAT-TAATAAATATATTATTATAT-TAATAAATA
* * * *
22935343 TTATTAATTTAAT-TAATAAATATATTAAT-AAT-
1 ATATTAA-TAAATAT-ATTATTATATTAATAAATA
22935375 ATATTAAT-AA-ATATTATTA-ATTAAT-AAT-
1 ATATTAATAAATATATTATTATATTAATAAATA
22935403 ATATTAATA
1 ATATTAATA
22935412 TATTAATAAA
Statistics
Matches: 187, Mismatches: 25, Indels: 47
0.72 0.10 0.18
Matches are distributed among these distances:
28 17 0.09
29 18 0.10
30 12 0.06
31 12 0.06
32 22 0.12
33 37 0.20
34 27 0.14
35 10 0.05
36 27 0.14
37 5 0.03
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (33 bp):
ATATTAATAAATATATTATTATATTAATAAATA
Found at i:22935428 original size:15 final size:15
Alignment explanation
Indices: 22935042--22935411 Score: 169
Period size: 15 Copynumber: 24.9 Consensus size: 15
22935032 AAAAAATATT
22935042 ATAATATATTAATAA
1 ATAATATATTAATAA
*
22935057 CTAATATTATTTTAATAA
1 ATAATA-TA--TTAATAA
*
22935075 ATAAAATATTAATAA
1 ATAATATATTAATAA
22935090 AT-A-ATATTACA-AA
1 ATAATATATTA-ATAA
22935103 ATAA-ATATT-AT-A
1 ATAATATATTAATAA
* *
22935115 CTAATATATTAATTTTA
1 ATAATATATTAA--TAA
*
22935132 ATAA-ATATTATTATA
1 ATAATATATTAATA-A
* *
22935147 TTAATA-AATAAT-A
1 ATAATATATTAATAA
*
22935160 ATATTATATTAATAA
1 ATAATATATTAATAA
22935175 ATCAA-ATATTAATAA
1 AT-AATATATTAATAA
* *
22935190 ATATTATTAAAATAATATA
1 ATA--A-TATATTAATA-A
*
22935209 TTAATATATTAATAA
1 ATAATATATTAATAA
22935224 ATAATAT-TATAATAA
1 ATAATATAT-TAATAA
22935239 ATAACATTATATTAATAA
1 AT-A-A-TATATTAATAA
*
22935257 ATGATATTATT-AT-A
1 ATAATA-TATTAATAA
* *
22935271 TTAATA-AATAATATA
1 ATAATATATTAATA-A
*
22935286 ATAA-ATATTATTAA
1 ATAATATATTAATAA
* * *
22935300 TTAAT-TAATAATAT
1 ATAATATATTAATAA
22935314 ATAATATA-T-ATAA
1 ATAATATATTAATAA
*
22935327 ATGAT-TA-TAATAA
1 ATAATATATTAATAA
22935340 AT-AT-TATTAATTTAA
1 ATAATATATTAA--TAA
* * *
22935355 TTAATA-AATATATTA
1 ATAATATATTA-ATAA
22935370 ATAATATATTAATAA
1 ATAATATATTAATAA
*
22935385 AT-AT-TATTAATTA
1 ATAATATATTAATAA
22935398 ATAATATATTAATA
1 ATAATATATTAATA
22935412 TATTAATAAA
Statistics
Matches: 270, Mismatches: 42, Indels: 86
0.68 0.11 0.22
Matches are distributed among these distances:
12 14 0.05
13 48 0.18
14 42 0.16
15 90 0.33
16 34 0.13
17 9 0.03
18 29 0.11
19 4 0.01
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (15 bp):
ATAATATATTAATAA
Found at i:22935493 original size:15 final size:15
Alignment explanation
Indices: 22935437--22935493 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
22935427 TAAAGAATAA
* *
22935437 TAAATAATTTTATTT
1 TAAATATTTTTATAT
*
22935452 TAAGTATTTTTATAT
1 TAAATATTTTTATAT
22935467 TCACATAATATTTTTATAT
1 T---A-AATATTTTTATAT
22935486 TAAATATT
1 TAAATATT
22935494 ATTACAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 19 0.56
16 1 0.03
18 1 0.03
19 13 0.38
ACGTcount: A:0.39, C:0.04, G:0.02, T:0.56
Consensus pattern (15 bp):
TAAATATTTTTATAT
Found at i:22935496 original size:18 final size:19
Alignment explanation
Indices: 22935456--22935496 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
22935446 TTATTTTAAG
*
22935456 TATTTTTATATTCACATAA
1 TATTTTTATATTCAAATAA
*
22935475 TATTTTTATATT-AAATAT
1 TATTTTTATATTCAAATAA
22935493 TATT
1 TATT
22935497 ACAAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTTTATATTCAAATAA
Found at i:22938999 original size:2 final size:2
Alignment explanation
Indices: 22938992--22939022 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
22938982 TGGTAAACCC
22938992 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
22939023 AAGTGCACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:22939696 original size:52 final size:52
Alignment explanation
Indices: 22939611--22939766 Score: 179
Period size: 52 Copynumber: 3.0 Consensus size: 52
22939601 ATAACCATAT
* * * * *
22939611 AAACTTGCCCATTAAAAATCCCTCTTCTCTTAGAATTCTTCTCCTGTAAGTC
1 AAACTTGCCTATTAAGAATCCTTTTTCTCTTAGAATTCTTCTCCTGCAAGTC
* * *
22939663 AAACTTGCCTATTAAGAATCTTTTTTCTTTTAGAATTCTTCTCTTGCAAGTC
1 AAACTTGCCTATTAAGAATCCTTTTTCTCTTAGAATTCTTCTCCTGCAAGTC
* * * **
22939715 AAACTTACTTATTAAGAATCCTCTTTCTCTT-GAAATTCTTCTTTTGCAAGTC
1 AAACTTGCCTATTAAGAATCCTTTTTCTCTTAG-AATTCTTCTCCTGCAAGTC
22939767 TTCTTGTCTA
Statistics
Matches: 89, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
51 1 0.01
52 88 0.99
ACGTcount: A:0.26, C:0.23, G:0.08, T:0.42
Consensus pattern (52 bp):
AAACTTGCCTATTAAGAATCCTTTTTCTCTTAGAATTCTTCTCCTGCAAGTC
Found at i:22940052 original size:55 final size:55
Alignment explanation
Indices: 22939876--22940052 Score: 134
Period size: 55 Copynumber: 3.2 Consensus size: 55
22939866 CAAATTCCAT
*
22939876 CAATCATCTGTCTTCATGCTAGACATGCTTGGCTCCACATACAATGAAAGTCTTA
1 CAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATGAAAGTCTTA
* * * * ** * *
22939931 CAATCATCT-TCTATTC-T-CTTG---TGTCTTCACGCTTCATAGACCTTGACTCAAAT-TCCA
1 CAATCATCTGTC--TTCATGCTAGACATG-CTT-A-GCTCCACATACAATGA---AAGTCT-TA
22939988 TCAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATGAAAGTCTTA
1 -CAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATGAAAGTCTTA
22940044 CAATCATCT
1 CAATCATCT
22940053 TCTATTCTCT
Statistics
Matches: 88, Mismatches: 17, Indels: 34
0.63 0.12 0.24
Matches are distributed among these distances:
51 2 0.02
52 3 0.03
54 16 0.18
55 19 0.22
56 8 0.09
57 8 0.09
58 10 0.11
59 16 0.18
60 1 0.01
61 3 0.03
62 2 0.02
ACGTcount: A:0.28, C:0.27, G:0.11, T:0.34
Consensus pattern (55 bp):
CAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATGAAAGTCTTA
Found at i:22940055 original size:113 final size:113
Alignment explanation
Indices: 22939857--22940081 Score: 441
Period size: 113 Copynumber: 2.0 Consensus size: 113
22939847 AACAATCTCC
*
22939857 ACCTTGACTCAAATTCCATCAATCATCTGTCTTCATGCTAGACATGCTTGGCTCCACATACAATG
1 ACCTTGACTCAAATTCCATCAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATG
22939922 AAAGTCTTACAATCATCTTCTATTCTCTTGTGTCTTCACGCTTCATAG
66 AAAGTCTTACAATCATCTTCTATTCTCTTGTGTCTTCACGCTTCATAG
22939970 ACCTTGACTCAAATTCCATCAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATG
1 ACCTTGACTCAAATTCCATCAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATG
22940035 AAAGTCTTACAATCATCTTCTATTCTCTTGTGTCTTCACGCTTCATA
66 AAAGTCTTACAATCATCTTCTATTCTCTTGTGTCTTCACGCTTCATA
22940082 CAAACCAATC
Statistics
Matches: 111, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
113 111 1.00
ACGTcount: A:0.26, C:0.28, G:0.11, T:0.36
Consensus pattern (113 bp):
ACCTTGACTCAAATTCCATCAATCATCTGTCTTCATGCTAGACATGCTTAGCTCCACATACAATG
AAAGTCTTACAATCATCTTCTATTCTCTTGTGTCTTCACGCTTCATAG
Found at i:22940888 original size:52 final size:52
Alignment explanation
Indices: 22940799--22940934 Score: 184
Period size: 52 Copynumber: 2.6 Consensus size: 52
22940789 TATAACCATA
* * * *
22940799 CAAACTTGCCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCCTGCAAGT
* * *
22940851 CAAATTTACCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCCTGCAAGT
*
22940903 CAAACTTACCTATTAAAAATCCTCTTT-CTCTT
1 CAAACTTACCTATTAAGAATCC-CTTTCCTCTT
22940935 GAAATTATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
52 69 0.95
53 4 0.05
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.39
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCCTTTCCTCTTAGAATTCTTCTCCTGCAAGT
Found at i:22940951 original size:52 final size:52
Alignment explanation
Indices: 22940799--22940955 Score: 149
Period size: 52 Copynumber: 3.0 Consensus size: 52
22940789 TATAACCATA
* * * * * * *
22940799 CAAACTTGCCCATTAAGAATCCCTCTCCTCTT-AGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAAAATCCCTTTCCT-TTGAGAATTATTCTCTTGCAAGT
* * * *
22940851 CAAATTTACCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAAAATCCCTTTCCTTTGAGAATTATTCTCTTGCAAGT
* *
22940903 CAAACTTACCTATTAAAAATCCTCTTT-CTCTTGA-AATTATTTTTTTGCAAGT
1 CAAACTTACCTATTAAAAATCC-CTTTCCT-TTGAGAATTATTCTCTTGCAAGT
22940955 C
1 C
22940956 TTCTTGTCTA
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
51 2 0.02
52 81 0.90
53 7 0.08
ACGTcount: A:0.27, C:0.25, G:0.08, T:0.40
Consensus pattern (52 bp):
CAAACTTACCTATTAAAAATCCCTTTCCTTTGAGAATTATTCTCTTGCAAGT
Found at i:22950612 original size:4 final size:4
Alignment explanation
Indices: 22950603--22950632 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
22950593 AGAATTAGGC
22950603 TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TA
22950633 TATATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.50, C:0.23, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:22950803 original size:2 final size:2
Alignment explanation
Indices: 22950796--22950822 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22950786 GCTAAGCTTG
22950796 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22950823 TTATGGGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22951113 original size:3 final size:3
Alignment explanation
Indices: 22951107--22951141 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
22951097 GTTTTCTCAG
22951107 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
22951142 GGTTGACAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:22958952 original size:24 final size:25
Alignment explanation
Indices: 22958912--22958960 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
22958902 GAACAATTGT
22958912 AATATATTATTTTTATGTATATTAA
1 AATATATTATTTTTATGTATATTAA
* *
22958937 AATA-ATTTTTTTTATGTATCTTAA
1 AATATATTATTTTTATGTATATTAA
22958961 TTAACTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 18 0.82
25 4 0.18
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (25 bp):
AATATATTATTTTTATGTATATTAA
Found at i:22977011 original size:18 final size:20
Alignment explanation
Indices: 22976962--22977017 Score: 68
Period size: 18 Copynumber: 3.0 Consensus size: 20
22976952 ATATTATATT
22976962 ATATCTTTAAAAATTATATCA
1 ATAT-TTTAAAAATTATATCA
22976983 ATATTTT--AAATTATAT-A
1 ATATTTTAAAAATTATATCA
22977000 A-ATTTTAAAAA-TATATCA
1 ATATTTTAAAAATTATATCA
22977018 TTTTGATAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
16 5 0.16
17 7 0.22
18 13 0.41
20 3 0.09
21 4 0.12
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
ATATTTTAAAAATTATATCA
Found at i:22977028 original size:35 final size:35
Alignment explanation
Indices: 22976967--22977036 Score: 83
Period size: 34 Copynumber: 2.0 Consensus size: 35
22976957 ATATTATATC
*
22976967 TTTAAAAATTATATCAATATTTTAAATTATATAAAT
1 TTTAAAAATTATATCAATATTTTAAA-TAAATAAAT
22977003 TTTAAAAA-TATATC-AT-TTTGATAAATAAATAAAT
1 TTTAAAAATTATATCAATATTT--TAAATAAATAAAT
22977037 AATTTTATCA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
33 3 0.10
34 10 0.32
35 10 0.32
36 8 0.26
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (35 bp):
TTTAAAAATTATATCAATATTTTAAATAAATAAAT
Found at i:22977967 original size:82 final size:82
Alignment explanation
Indices: 22977830--22978006 Score: 354
Period size: 82 Copynumber: 2.2 Consensus size: 82
22977820 AAGAGGTGAT
22977830 TTAATTTCGCCATTTTAGTGTAATTTAATTACCAATTGTTTTAATTCATTATTTAACATTACATA
1 TTAATTTCGCCATTTTAGTGTAATTTAATTACCAATTGTTTTAATTCATTATTTAACATTACATA
22977895 TATAAAATTTTACAGTA
66 TATAAAATTTTACAGTA
22977912 TTAATTTCGCCATTTTAGTGTAATTTAATTACCAATTGTTTTAATTCATTATTTAACATTACATA
1 TTAATTTCGCCATTTTAGTGTAATTTAATTACCAATTGTTTTAATTCATTATTTAACATTACATA
22977977 TATAAAATTTTACAGTA
66 TATAAAATTTTACAGTA
22977994 TTAATTTCGCCAT
1 TTAATTTCGCCAT
22978007 GATAATAAAA
Statistics
Matches: 95, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 95 1.00
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.47
Consensus pattern (82 bp):
TTAATTTCGCCATTTTAGTGTAATTTAATTACCAATTGTTTTAATTCATTATTTAACATTACATA
TATAAAATTTTACAGTA
Found at i:22978617 original size:2 final size:2
Alignment explanation
Indices: 22978610--22978647 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
22978600 AAAAGACTTT
*
22978610 TA TA TA TA TG TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22978648 CACACACTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22978936 original size:15 final size:14
Alignment explanation
Indices: 22978913--22978940 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
22978903 TCTAATTTGT
22978913 GTTACAAAAATTCA
1 GTTACAAAAATTCA
22978927 GTTACAAAAATTCA
1 GTTACAAAAATTCA
22978941 CCTTATAAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
GTTACAAAAATTCA
Found at i:22980799 original size:22 final size:24
Alignment explanation
Indices: 22980738--22980801 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 24
22980728 ATTGTATTTG
* *
22980738 TTATT-ATATAATTAATTTATTATA
1 TTATTAATAAAATTAA-ATATTATA
* *
22980762 TTATTAGTAAATTTAAATATTA-A
1 TTATTAATAAAATTAAATATTATA
22980785 TT-TTAATAAAATTAAAT
1 TTATTAATAAAATTAAAT
22980802 CAATATAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
22 13 0.39
23 3 0.09
24 10 0.30
25 7 0.21
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTATTAATAAAATTAAATATTATA
Found at i:22980847 original size:23 final size:23
Alignment explanation
Indices: 22980810--22980853 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
22980800 ATCAATATAA
22980810 AATTTTATTAAAAT-ATTTTTGT
1 AATTTTATTAAAATAATTTTTGT
*
22980832 AATTTTAATTATAATAATTTTT
1 AATTTT-ATTAAAATAATTTTT
22980854 ATTACTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 6 0.32
23 7 0.37
24 6 0.32
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (23 bp):
AATTTTATTAAAATAATTTTTGT
Found at i:22983346 original size:29 final size:29
Alignment explanation
Indices: 22983292--22983351 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
22983282 AAATTATAAT
* *
22983292 AAAATATTTAATATGATATTTAAAATTTA
1 AAAATATTTAATATAATATTTAAAATATA
22983321 AAAATATTTAATATAATATCTT-AAATATA
1 AAAATATTTAATATAATAT-TTAAAATATA
22983350 AA
1 AA
22983352 TTTTTTCACT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 26 0.93
30 2 0.07
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (29 bp):
AAAATATTTAATATAATATTTAAAATATA
Found at i:22987455 original size:20 final size:19
Alignment explanation
Indices: 22987419--22987457 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
22987409 ATTATTTTAG
* *
22987419 CTTTTAACATGTTTAAAAT
1 CTTTTAACATATATAAAAT
22987438 CTTTATAACATATATAAAAT
1 CTTT-TAACATATATAAAAT
22987458 AACGCTGACA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.44, C:0.10, G:0.03, T:0.44
Consensus pattern (19 bp):
CTTTTAACATATATAAAAT
Found at i:22991969 original size:50 final size:50
Alignment explanation
Indices: 22991910--22992010 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
22991900 CTTCTCTGTC
22991910 AAGAGACAGAATAACAATTGCTGGTGAACAAATAAATCCTGTTTCATTCT
1 AAGAGACAGAATAACAATTGCTGGTGAACAAATAAATCCTGTTTCATTCT
22991960 AAGAGACAGAATAACAATTGCTGGTGAACAAATAAATCCTGTTTCATTCT
1 AAGAGACAGAATAACAATTGCTGGTGAACAAATAAATCCTGTTTCATTCT
22992010 A
1 A
22992011 TAAGAAACTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (50 bp):
AAGAGACAGAATAACAATTGCTGGTGAACAAATAAATCCTGTTTCATTCT
Found at i:22993055 original size:2 final size:2
Alignment explanation
Indices: 22993044--22993077 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
22993034 CACGATCTTA
22993044 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
22993078 AAAGAGATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22995441 original size:21 final size:24
Alignment explanation
Indices: 22995399--22995444 Score: 71
Period size: 21 Copynumber: 2.0 Consensus size: 24
22995389 AAAAAGATAG
22995399 AAATTTGGAGAATATGGGAAGGGA
1 AAATTTGGAGAATATGGGAAGGGA
22995423 AAATTT-GAGAAT-T-GGAAGGGA
1 AAATTTGGAGAATATGGGAAGGGA
22995444 A
1 A
22995445 TCAAAAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.41
22 1 0.05
23 6 0.27
24 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.35, T:0.22
Consensus pattern (24 bp):
AAATTTGGAGAATATGGGAAGGGA
Found at i:22995886 original size:2 final size:2
Alignment explanation
Indices: 22995879--22995907 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
22995869 CTTATCCTTT
22995879 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22995908 TTCTTTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:22996531 original size:16 final size:16
Alignment explanation
Indices: 22996510--22996540 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22996500 ATATTTATAT
22996510 ATTTTTAATAAATAAA
1 ATTTTTAATAAATAAA
*
22996526 ATTTTTATTAAATAA
1 ATTTTTAATAAATAA
22996541 TATAAATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTTTAATAAATAAA
Found at i:23011147 original size:16 final size:16
Alignment explanation
Indices: 23011126--23011158 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
23011116 AGATCTGGGA
*
23011126 TTTTTTTCTTTTT-CT
1 TTTTTTTTTTTTTGCT
23011141 TTTTTTTTTTTTTGCT
1 TTTTTTTTTTTTTGCT
23011157 TT
1 TT
23011159 GTTTGATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.00, C:0.09, G:0.03, T:0.88
Consensus pattern (16 bp):
TTTTTTTTTTTTTGCT
Found at i:23011833 original size:13 final size:13
Alignment explanation
Indices: 23011802--23011842 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
23011792 AATCTAATTA
23011802 AATATATTAAAAT
1 AATATATTAAAAT
**
23011815 TTTATATTAAAAT
1 AATATATTAAAAT
*
23011828 AATATATAAAAAT
1 AATATATTAAAAT
23011841 AA
1 AA
23011843 GAAATTTAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:23013253 original size:13 final size:13
Alignment explanation
Indices: 23013235--23013259 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23013225 ATATATTCTT
23013235 TTAAAATTATAAA
1 TTAAAATTATAAA
23013248 TTAAAATTATAA
1 TTAAAATTATAA
23013260 TAAATATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TTAAAATTATAAA
Found at i:23021020 original size:20 final size:21
Alignment explanation
Indices: 23020995--23021033 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
23020985 GTTTTGATTA
23020995 AAAATT-ATTAAA-TAAAAATT
1 AAAATTGA-TAAATTAAAAATT
23021015 AAAATTGATAAATTAAAAA
1 AAAATTGATAAATTAAAAA
23021034 ATTTTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (21 bp):
AAAATTGATAAATTAAAAATT
Found at i:23021554 original size:9 final size:9
Alignment explanation
Indices: 23021540--23021569 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
23021530 AATATTTTAT
23021540 TAATTAAAA
1 TAATTAAAA
23021549 TAATTAAAA
1 TAATTAAAA
23021558 TATATTAAAA
1 TA-ATTAAAA
23021568 TA
1 TA
23021570 TAAAAATTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAA
Found at i:23021566 original size:10 final size:10
Alignment explanation
Indices: 23021542--23021571 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
23021532 TATTTTATTA
23021542 ATTAAAATA-
1 ATTAAAATAT
23021551 ATTAAAATAT
1 ATTAAAATAT
23021561 ATTAAAATAT
1 ATTAAAATAT
23021571 A
1 A
23021572 AAAATTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
ATTAAAATAT
Found at i:23024485 original size:4 final size:4
Alignment explanation
Indices: 23024478--23024530 Score: 106
Period size: 4 Copynumber: 13.2 Consensus size: 4
23024468 TATATATATA
23024478 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
23024526 TATG T
1 TATG T
23024531 TTTGAGCAAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 49 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:23028307 original size:23 final size:25
Alignment explanation
Indices: 23028259--23028303 Score: 60
Period size: 23 Copynumber: 1.9 Consensus size: 25
23028249 TTTAAAAACT
*
23028259 AAAAATAATATAAAGATTATTTATA
1 AAAAATAATATAAAGATTATTAATA
23028284 AAAAAT-AT-TAAAGA-TATTAA
1 AAAAATAATATAAAGATTATTAA
23028304 ATAATATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 6 0.32
24 2 0.11
25 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (25 bp):
AAAAATAATATAAAGATTATTAATA
Found at i:23028817 original size:2 final size:2
Alignment explanation
Indices: 23028757--23028797 Score: 55
Period size: 2 Copynumber: 20.5 Consensus size: 2
23028747 TGTTGTTAGA
* * *
23028757 AT AT AA AT AT GT AT AT GT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23028798 ATTCTGTTAG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
AT
Found at i:23029654 original size:9 final size:9
Alignment explanation
Indices: 23029637--23029667 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
23029627 GGAGTGGGTG
23029637 AAAATAAAA
1 AAAATAAAA
*
23029646 AAAAAAAAA
1 AAAATAAAA
23029655 AAAATAAAA
1 AAAATAAAA
23029664 AAAA
1 AAAA
23029668 GAGGAGCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.94, C:0.00, G:0.00, T:0.06
Consensus pattern (9 bp):
AAAATAAAA
Found at i:23038799 original size:22 final size:24
Alignment explanation
Indices: 23038757--23038800 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
23038747 ATAGTGTTGT
23038757 GGAGATGATAAGGAAAGAGAAGAA
1 GGAGATGATAAGGAAAGAGAAGAA
23038781 GGAGATGA-AAGG-AAGAGAAG
1 GGAGATGATAAGGAAAGAGAAG
23038801 CCATGGATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 4 0.20
24 8 0.40
ACGTcount: A:0.52, C:0.00, G:0.41, T:0.07
Consensus pattern (24 bp):
GGAGATGATAAGGAAAGAGAAGAA
Found at i:23045288 original size:16 final size:18
Alignment explanation
Indices: 23045267--23045301 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23045257 TATATTATTT
23045267 TTTTAAA-AT-TAAAAAA
1 TTTTAAATATATAAAAAA
23045283 TTTTAAATATATAAAAAA
1 TTTTAAATATATAAAAAA
23045301 T
1 T
23045302 ATATGTCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 2 0.12
18 8 0.47
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTTTAAATATATAAAAAA
Found at i:23053753 original size:19 final size:22
Alignment explanation
Indices: 23053719--23053762 Score: 67
Period size: 19 Copynumber: 2.1 Consensus size: 22
23053709 TTCGATTTGA
23053719 TTTAAAATTAATAAAATATT-T
1 TTTAAAATTAATAAAATATTAT
23053740 TTTAAAA-T-ATAAAATATTAT
1 TTTAAAATTAATAAAATATTAT
23053760 TTT
1 TTT
23053763 TAATGTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.45
20 5 0.23
21 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTAAAATTAATAAAATATTAT
Found at i:23067234 original size:2 final size:2
Alignment explanation
Indices: 23067227--23067257 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
23067217 TGTAACCATT
23067227 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23067258 CATAATGATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23077723 original size:17 final size:18
Alignment explanation
Indices: 23077698--23077739 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
23077688 ATAATATTTT
* *
23077698 TATTTTTTAATA-ATTAA
1 TATTATTTAATATAGTAA
23077715 TATTATTTAATATAGTAA
1 TATTATTTAATATAGTAA
23077733 TATTATT
1 TATTATT
23077740 ATTGTAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (18 bp):
TATTATTTAATATAGTAA
Found at i:23082041 original size:2 final size:2
Alignment explanation
Indices: 23082034--23082062 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23082024 ATAAGAAATT
23082034 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
23082063 TTACACACAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:23084048 original size:61 final size:62
Alignment explanation
Indices: 23083943--23084060 Score: 177
Period size: 61 Copynumber: 1.9 Consensus size: 62
23083933 AGTTACCCTA
23083943 TTTTTGGATAAATAAAAATTTAAATTATATAAAAAAAAAAAAGCAAGACAAACTTAGATGAT
1 TTTTTGGATAAATAAAAATTTAAATTATATAAAAAAAAAAAAGCAAGACAAACTTAGATGAT
* * **
23084005 TTTTTGGATAAATAAAAA-TTAAATT-TTTATTAAAAAAGGAAGCAAGACAAACTTAG
1 TTTTTGGATAAATAAAAATTTAAATTATATA-AAAAAAAAAAAGCAAGACAAACTTAG
23084061 CGGACTCCAG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
60 3 0.06
61 30 0.59
62 18 0.35
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (62 bp):
TTTTTGGATAAATAAAAATTTAAATTATATAAAAAAAAAAAAGCAAGACAAACTTAGATGAT
Found at i:23085126 original size:2 final size:2
Alignment explanation
Indices: 23085088--23085113 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23085078 CACACACGTG
23085088 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
23085114 GGCAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:23087829 original size:2 final size:2
Alignment explanation
Indices: 23087822--23087847 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
23087812 AAAAGGAAAG
23087822 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
23087848 AAATATTTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:23091667 original size:14 final size:15
Alignment explanation
Indices: 23091648--23091676 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23091638 ATCAATTAAT
23091648 TTTAAAAT-AAATTA
1 TTTAAAATCAAATTA
23091662 TTTAAAATCAAATTA
1 TTTAAAATCAAATTA
23091677 ATCAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
TTTAAAATCAAATTA
Found at i:23091726 original size:28 final size:28
Alignment explanation
Indices: 23091673--23091727 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
23091663 TTAAAATCAA
* *
23091673 ATTAATCAAATTATATTATTTTATTTTT
1 ATTAATCAAATTAAATTATTTAATTTTT
*
23091701 ATTAATTAAATTAAATT-TATTAATTTT
1 ATTAATCAAATTAAATTAT-TTAATTTT
23091728 GAAATTTAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 1 0.04
28 22 0.96
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (28 bp):
ATTAATCAAATTAAATTATTTAATTTTT
Found at i:23092330 original size:18 final size:17
Alignment explanation
Indices: 23092292--23092334 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
23092282 AATAATTTTC
23092292 TTGATTTTCTTTGTTTG
1 TTGATTTTCTTTGTTTG
*
23092309 TTGAATTTTTTTTGTTAT-
1 TTG-ATTTTCTTTGTT-TG
23092327 TTGATTTT
1 TTGATTTT
23092335 ATTTATTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 14 0.61
19 1 0.04
ACGTcount: A:0.12, C:0.02, G:0.14, T:0.72
Consensus pattern (17 bp):
TTGATTTTCTTTGTTTG
Found at i:23093845 original size:19 final size:17
Alignment explanation
Indices: 23093821--23093867 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 17
23093811 GGGGATTGTG
23093821 TTTTTTTATTTGAATGAT
1 TTTTTTTATTTGAA-GAT
*
23093839 TTTTTTT-TGCATGAAGAT
1 TTTTTTTAT--TTGAAGAT
23093857 TTTTTTTATTT
1 TTTTTTTATTT
23093868 TGGAAACTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 7
0.73 0.06 0.21
Matches are distributed among these distances:
17 2 0.08
18 17 0.71
19 5 0.21
ACGTcount: A:0.19, C:0.02, G:0.11, T:0.68
Consensus pattern (17 bp):
TTTTTTTATTTGAAGAT
Found at i:23093898 original size:21 final size:20
Alignment explanation
Indices: 23093858--23093910 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
23093848 CATGAAGATT
*
23093858 TTTTTTATTTTGGAAACTT-C
1 TTTTTT-TTTTGCAAACTTCC
23093878 TTTTTTTTTTGCAAGATCTTCC
1 TTTTTTTTTTGCAA-A-CTTCC
*
23093900 CTTTTTTTTTG
1 TTTTTTTTTTG
23093911 GTATGGCACG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 7 0.25
20 7 0.25
21 3 0.11
22 11 0.39
ACGTcount: A:0.13, C:0.13, G:0.09, T:0.64
Consensus pattern (20 bp):
TTTTTTTTTTGCAAACTTCC
Found at i:23094609 original size:52 final size:51
Alignment explanation
Indices: 23094545--23094705 Score: 166
Period size: 52 Copynumber: 3.1 Consensus size: 51
23094535 GAAGCTCGAT
* * *
23094545 AACTTTTGAAAATTTAAAATCTGAAAAAGGCTCTTCTCAGCAGAGACTCAAC
1 AACTTTTAAAAATTT-AAATCTGAAAAAAGCTCTTCTCAGCAGAGGCTCAAC
** * *
23094597 AACTTTTAAAAATTTTCATCTTGAAAAAAGCTCATT-TCAGTAAAGGCTCAAC
1 AACTTTTAAAAATTTAAATC-TGAAAAAAGCTC-TTCTCAGCAGAGGCTCAAC
* * *
23094649 AA-TTTTAAAAATTCTTATATC-GAAAAAAGCTCATCTGAGCAGAGGCTCAAC
1 AACTTTTAAAAA-T-TTAAATCTGAAAAAAGCTCTTCTCAGCAGAGGCTCAAC
23094700 AACTTT
1 AACTTT
23094706 AAATTAAATA
Statistics
Matches: 90, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
50 1 0.01
51 38 0.42
52 44 0.49
53 7 0.08
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (51 bp):
AACTTTTAAAAATTTAAATCTGAAAAAAGCTCTTCTCAGCAGAGGCTCAAC
Found at i:23094674 original size:51 final size:51
Alignment explanation
Indices: 23094567--23094708 Score: 160
Period size: 51 Copynumber: 2.8 Consensus size: 51
23094557 TTTAAAATCT
* * * * * *
23094567 GAAAAAGGCTCTTCTCAGCAGAGACTCAACAACTTTTAAAAATTTTCATCTT
1 GAAAAAAGCTCATCTCAGCAAAGGCTCAACAA-TTTTAAAAATTTTCATATC
* *
23094619 GAAAAAAGCTCATTTCAGTAAAGGCTCAACAATTTTAAAAATTCTT-ATATC
1 GAAAAAAGCTCATCTCAGCAAAGGCTCAACAATTTTAAAAATT-TTCATATC
* * *
23094670 GAAAAAAGCTCATCTGAGCAGAGGCTCAACAACTTTAAA
1 GAAAAAAGCTCATCTCAGCAAAGGCTCAACAATTTTAAA
23094709 TTAAATAATT
Statistics
Matches: 76, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
51 48 0.63
52 28 0.37
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (51 bp):
GAAAAAAGCTCATCTCAGCAAAGGCTCAACAATTTTAAAAATTTTCATATC
Found at i:23094935 original size:47 final size:49
Alignment explanation
Indices: 23094842--23094935 Score: 129
Period size: 47 Copynumber: 2.0 Consensus size: 49
23094832 GAAAAAATGT
* *
23094842 AATTCAAGCTTTAATACTCGGATATCACCACCGAAAAAATGTAAATGCA
1 AATTCAAGCTTTAATACTCAGATATCACCACCGAAAAAATGCAAATGCA
* * *
23094891 AATTCAA-CTTTAA-ACTCAGATATCACCATCGAGAATATGCAAATG
1 AATTCAAGCTTTAATACTCAGATATCACCACCGAAAAAATGCAAATG
23094936 ACTTCGAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
47 27 0.68
48 6 0.15
49 7 0.17
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.26
Consensus pattern (49 bp):
AATTCAAGCTTTAATACTCAGATATCACCACCGAAAAAATGCAAATGCA
Found at i:23095034 original size:48 final size:48
Alignment explanation
Indices: 23094981--23095081 Score: 125
Period size: 48 Copynumber: 2.1 Consensus size: 48
23094971 ACTATCGAGA
* * * *
23094981 AAATGC-AATTTAAGCTTTAATACTCGGATATCACCACCAAGAGA-ATGC
1 AAATGCAAATTCAAACTTTAA-ACTCAGACATCACCACCAAGA-ATATGC
*
23095029 AAATGCAAATTCAAACTTTAAACTCAGACATCACCACCGAGAATATGC
1 AAATGCAAATTCAAACTTTAAACTCAGACATCACCACCAAGAATATGC
23095077 AAATG
1 AAATG
23095082 ACTTCAGATA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
47 1 0.02
48 33 0.72
49 12 0.26
ACGTcount: A:0.43, C:0.22, G:0.13, T:0.23
Consensus pattern (48 bp):
AAATGCAAATTCAAACTTTAAACTCAGACATCACCACCAAGAATATGC
Found at i:23095081 original size:146 final size:145
Alignment explanation
Indices: 23094766--23095086 Score: 450
Period size: 145 Copynumber: 2.2 Consensus size: 145
23094756 AATCTCGAAT
* ** *
23094766 ATCACCACTGAGAATATGCAAATGACTTCGAATATCGTCACTAAAGGAAACTCGAATATCATCAT
1 ATCACCACCGAGAATATGCAAATGACTTCGAATATCG-CACTAAAAAAAACTCAAATATCATCAT
* *
23094831 CGAAAAAATGTAATTCAAGCTTTAATACTCGGATATCACCACCGAAAAAATGTAAATGCAAATTC
65 CGAAAAAATGCAATTCAAGCTTTAATACTCGGATATCACCACCGAAAAAATGCAAATGCAAATTC
*
23094896 AACTTTAAACTCAGAT
130 AACTTTAAACTCAGAC
* * * *
23094912 ATCACCATCGAGAATATGCAAATGACTTCGAATTTAC-CACTAAAAAAAATTTAAATATCA-CTA
1 ATCACCACCGAGAATATGCAAATGACTTCGAATAT-CGCACTAAAAAAAACTCAAATATCATC-A
* * *
23094975 TCGAGAAAATGCAATTTAAGCTTTAATACTCGGATATCACCACC-AAGAGAATGCAAATGCAAAT
64 TCGAAAAAATGCAATTCAAGCTTTAATACTCGGATATCACCACCGAA-AAAATGCAAATGCAAAT
23095039 TCAAACTTTAAACTCAGAC
128 TC-AACTTTAAACTCAGAC
23095058 ATCACCACCGAGAATATGCAAATGACTTC
1 ATCACCACCGAGAATATGCAAATGACTTC
23095087 AGATATCACC
Statistics
Matches: 156, Mismatches: 15, Indels: 8
0.87 0.08 0.04
Matches are distributed among these distances:
144 3 0.02
145 77 0.49
146 75 0.48
147 1 0.01
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.25
Consensus pattern (145 bp):
ATCACCACCGAGAATATGCAAATGACTTCGAATATCGCACTAAAAAAAACTCAAATATCATCATC
GAAAAAATGCAATTCAAGCTTTAATACTCGGATATCACCACCGAAAAAATGCAAATGCAAATTCA
ACTTTAAACTCAGAC
Found at i:23095108 original size:81 final size:81
Alignment explanation
Indices: 23095007--23095159 Score: 225
Period size: 81 Copynumber: 1.9 Consensus size: 81
23094997 TTAATACTCG
*
23095007 GATATCACCACCAAGAGAATGCAAATGCAAATTCAAACTTTAAACTCAGACATCACCACCGAGAA
1 GATATCACCACCAAGAGAATGCAAATACAAATTCAAACTTTAAACTCAGACATCACCACCGAGAA
*
23095072 TATGCAAATGACTTCA
66 GATGCAAATGACTTCA
* * * ** * *
23095088 GATATCACCATCGAGAGAATGCAAATATAAATTCAAACTTTAAACTTGGATATCACTACCGAGAA
1 GATATCACCACCAAGAGAATGCAAATACAAATTCAAACTTTAAACTCAGACATCACCACCGAGAA
23095153 GATGCAA
66 GATGCAA
23095160 TTCAAACTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 63 1.00
ACGTcount: A:0.43, C:0.22, G:0.14, T:0.22
Consensus pattern (81 bp):
GATATCACCACCAAGAGAATGCAAATACAAATTCAAACTTTAAACTCAGACATCACCACCGAGAA
GATGCAAATGACTTCA
Found at i:23095197 original size:42 final size:41
Alignment explanation
Indices: 23095117--23095198 Score: 110
Period size: 42 Copynumber: 2.0 Consensus size: 41
23095107 TGCAAATATA
** * *
23095117 AATTCAAACTTTAAACTTGGATATCACTACCGAGAAGATGC
1 AATTCAAACTTTAAACTCAGATATCACCACCGAAAAGATGC
*
23095158 AATTCAAACTTTAACACTCAGATATCACCACTGAAAAGATG
1 AATTCAAACTTTAA-ACTCAGATATCACCACCGAAAAGATG
23095199 TAAATGACTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
41 14 0.40
42 21 0.60
ACGTcount: A:0.41, C:0.21, G:0.12, T:0.26
Consensus pattern (41 bp):
AATTCAAACTTTAAACTCAGATATCACCACCGAAAAGATGC
Found at i:23095345 original size:75 final size:75
Alignment explanation
Indices: 23095243--23095552 Score: 440
Period size: 75 Copynumber: 4.1 Consensus size: 75
23095233 GCCGAATGAT
* *
23095243 TTTAAAAATATCTTGGATATCATCATCAAGAAAATGAAATTCATACTTTAATACTCAGATATCAC
1 TTTAAAAATATCTTGGATATCACCATCAAAAAAATGAAATTCATACTTTAATACTCAGATATCAC
* *
23095308 CATCGAAAAC
66 CACCGAGAAC
* * * * * ** *
23095318 TTTGAAAATGTCTTGGATATCACCATCAAGAAAATAAAATCCATACTTTAATACTTGGATATCAT
1 TTTAAAAATATCTTGGATATCACCATCAAAAAAATGAAATTCATACTTTAATACTCAGATATCAC
*
23095383 CACTGAGAAC
66 CACCGAGAAC
* * * *
23095393 TTTAAAAATATCTTGGATATCACTATTAAAAAAATGAAATTGATACTTTAATACTTAGATATCAC
1 TTTAAAAATATCTTGGATATCACCATCAAAAAAATGAAATTCATACTTTAATACTCAGATATCAC
23095458 CACCGAGAAC
66 CACCGAGAAC
* *
23095468 TTTAAAAATATCTTGGATATCACCATTAAAAAAATGAAATTCATACTTTAATACTCGGATATCAC
1 TTTAAAAATATCTTGGATATCACCATCAAAAAAATGAAATTCATACTTTAATACTCAGATATCAC
23095533 CACCGAGAAC
66 CACCGAGAAC
*
23095543 TTTGAAAATA
1 TTTAAAAATA
23095553 ATTTATCACA
Statistics
Matches: 208, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
75 208 1.00
ACGTcount: A:0.43, C:0.16, G:0.10, T:0.31
Consensus pattern (75 bp):
TTTAAAAATATCTTGGATATCACCATCAAAAAAATGAAATTCATACTTTAATACTCAGATATCAC
CACCGAGAAC
Found at i:23095819 original size:35 final size:35
Alignment explanation
Indices: 23095732--23095844 Score: 126
Period size: 35 Copynumber: 3.3 Consensus size: 35
23095722 CATTATGATG
*
23095732 CAAATGTCTTCTCTTAAAATGA-G--GATGCAAATA
1 CAAATGTCTTCTCTTAAAATGATGCACATG-AAATA
**
23095765 CAAATGTCTGT-TCCCAAAATGATGCACATGAAATA
1 CAAATGTCT-TCTCTTAAAATGATGCACATGAAATA
* *
23095800 CAAATGCCTTCTCTTAAAATGATGCACATGAAATG
1 CAAATGTCTTCTCTTAAAATGATGCACATGAAATA
*
23095835 CAAATATCTT
1 CAAATGTCTT
23095845 TAAAAAAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
33 18 0.27
34 3 0.05
35 42 0.64
36 3 0.05
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (35 bp):
CAAATGTCTTCTCTTAAAATGATGCACATGAAATA
Found at i:23096087 original size:21 final size:22
Alignment explanation
Indices: 23096056--23096096 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
23096046 GCTGCTCATT
* *
23096056 TTCATCAATTTTGCTTTCTTTC
1 TTCATCAATTTGGATTTCTTTC
23096078 TTCA-CAATTTGGATTTCTT
1 TTCATCAATTTGGATTTCTT
23096097 GACTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.56
Consensus pattern (22 bp):
TTCATCAATTTGGATTTCTTTC
Found at i:23101352 original size:16 final size:15
Alignment explanation
Indices: 23101313--23101372 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 15
23101303 AATAATTTTC
23101313 TTGATTTTTTTGTTT
1 TTGATTTTTTTGTTT
23101328 GTTGAATTTTTTTGTTAT
1 -TTG-ATTTTTTTGTT-T
*
23101346 TTGATTTTATTTATTGT
1 TTGATTTT-TTTGTT-T
*
23101363 TTTATTTTTT
1 TTGATTTTTT
23101373 ATTCAAATTT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
16 10 0.26
17 27 0.71
18 1 0.03
ACGTcount: A:0.13, C:0.00, G:0.12, T:0.75
Consensus pattern (15 bp):
TTGATTTTTTTGTTT
Found at i:23103200 original size:17 final size:18
Alignment explanation
Indices: 23103166--23103205 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
23103156 AAAATTAAAA
23103166 TATTATCATATATCAATT
1 TATTATCATATATCAATT
23103184 TATTCATCATAT-T-AATT
1 TATT-ATCATATATCAATT
23103201 TATTA
1 TATTA
23103206 ATTATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.05
17 8 0.38
18 5 0.24
19 7 0.33
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (18 bp):
TATTATCATATATCAATT
Found at i:23104528 original size:36 final size:36
Alignment explanation
Indices: 23104482--23104551 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
23104472 CAATGAAATT
* *
23104482 GTTATGTTTTTGGGTTTTTATGATATTAAACTAATA
1 GTTATATTTTTGGATTTTTATGATATTAAACTAATA
23104518 GTTATATTTTTGGATTTTTATGATATTAAACTAA
1 GTTATATTTTTGGATTTTTATGATATTAAACTAA
23104552 GGAGTAATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (36 bp):
GTTATATTTTTGGATTTTTATGATATTAAACTAATA
Found at i:23109316 original size:2 final size:2
Alignment explanation
Indices: 23109309--23109365 Score: 114
Period size: 2 Copynumber: 28.5 Consensus size: 2
23109299 AGGGTTGAAA
23109309 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23109351 AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG A
23109366 AATGAATAGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 55 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23110582 original size:38 final size:38
Alignment explanation
Indices: 23110531--23110606 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
23110521 AACCAGTTTA
* *
23110531 CATAGTCTTCTGCTAAAGAGGGAAGGAACCCAAAAACC
1 CATAGTATTCTGCTAAAGAGGGAAGAAACCCAAAAACC
23110569 CATAGTATTCTGCTAAAGAGGGAAGAAACCCAAAAACC
1 CATAGTATTCTGCTAAAGAGGGAAGAAACCCAAAAACC
23110607 AGACCATAAC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.42, C:0.22, G:0.20, T:0.16
Consensus pattern (38 bp):
CATAGTATTCTGCTAAAGAGGGAAGAAACCCAAAAACC
Found at i:23110702 original size:78 final size:82
Alignment explanation
Indices: 23110618--23110774 Score: 259
Period size: 83 Copynumber: 2.0 Consensus size: 82
23110608 GACCATAACG
*
23110618 GAGATATCCACTAGTACAAACGCCCATATTCGA-T-G-T-TCTATGATTTTAACCCAAAACAAAA
1 GAGATATCCACTAGTACAAACGCCCATATTCGATTCGATGTCTATGATTGTAACCCAAAACAAAA
23110679 AAGACCAGTGCTAGACA
66 AAGACCAGTGCTAGACA
23110696 GAGATATCCACTAGTACAAACGCCCATATTCGATTCGATGGTCTATGATTGTAACCCAAAACAAA
1 GAGATATCCACTAGTACAAACGCCCATATTCGATTCGAT-GTCTATGATTGTAACCCAAAACAAA
*
23110761 AAAGAGCAGTGCTA
65 AAAGACCAGTGCTA
23110775 TTCGTTGTGC
Statistics
Matches: 72, Mismatches: 2, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
78 33 0.46
79 1 0.01
80 1 0.01
81 1 0.01
83 36 0.50
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (82 bp):
GAGATATCCACTAGTACAAACGCCCATATTCGATTCGATGTCTATGATTGTAACCCAAAACAAAA
AAGACCAGTGCTAGACA
Found at i:23122175 original size:13 final size:13
Alignment explanation
Indices: 23122148--23122188 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
23122138 CCAATTTTGA
23122148 TTTTA-TTTTTA-
1 TTTTATTTTTTAT
* *
23122159 TTTTGTTTTTTGT
1 TTTTATTTTTTAT
23122172 TTTTATTTTTTAT
1 TTTTATTTTTTAT
23122185 TTTT
1 TTTT
23122189 TTGGTTTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
11 4 0.17
12 5 0.21
13 15 0.62
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (13 bp):
TTTTATTTTTTAT
Found at i:23122190 original size:21 final size:21
Alignment explanation
Indices: 23122164--23122226 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
23122154 TTTTATTTTG
*
23122164 TTTTTTGTTTTTATTTTTTAT
1 TTTTTTGTTTTAATTTTTTAT
* *
23122185 TTTTTTGGTTTCATTGTTCTTA-
1 TTTTTTGTTTTAATT-TT-TTAT
*
23122207 -ATTTTGTTTTAATTTTTTAT
1 TTTTTTGTTTTAATTTTTTAT
23122227 ATATAATTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
19 3 0.09
20 2 0.06
21 24 0.71
22 2 0.06
23 3 0.09
ACGTcount: A:0.13, C:0.03, G:0.08, T:0.76
Consensus pattern (21 bp):
TTTTTTGTTTTAATTTTTTAT
Found at i:23123351 original size:186 final size:184
Alignment explanation
Indices: 23123031--23123373 Score: 466
Period size: 186 Copynumber: 1.9 Consensus size: 184
23123021 TTAATTTAAT
** * *
23123031 AAAAAAATAAAAATAAAAAAATTTGAGAATAAATATTAATTATTCAATGATGAAATTTATAGAAA
1 AAAAAAATAAAAATAAAAAAATTTGAGAATAAATACAAATTATCCAAGGATGAAATTTATAGAAA
* ** *
23123096 TTTCAAATGGTAAATTTCTATAAAATTCTTAGGTGAGAAATTTTGTCTAAATTTATCTCAAATTG
66 TTTCAAATGGTAAATTTCTATAAAATTCTTAAGTGAGAAATTTCCTCTAAATTTAGCTCAAATTG
23123161 TGGAATAATTTAGAT-AAAGTTTCAATAGCAATAATTAATATTTATTTTCAAATC
131 TGGAATAATTTAGATGAAA-TTTCAATAGCAATAATTAATATTTATTTTCAAATC
* *
23123215 AAAAAAATTAAAAATATAAAAATTTTTG-GAATTAAATACAAATTATCCAAGGATGAGATTCT-T
1 AAAAAAA-TAAAAATA-AAAAA-ATTTGAGAA-TAAATACAAATTATCCAAGGATGAAATT-TAT
23123278 AGAAATTTCAAATGGTAAA-TTCTA-AGAAA-TCTCTAAGTGAGAAATTTCCTCTAAATTTAGGC
61 AGAAATTTCAAATGGTAAATTTCTATA-AAATTCT-TAAGTGAGAAATTTCCTCTAAATTTA-GC
23123340 -CAAATTGTGGAATAATTTAGATGAAATTTCAATA
123 TCAAATTGTGGAATAATTTAGATGAAATTTCAATA
23123374 AAAGTAATTG
Statistics
Matches: 140, Mismatches: 10, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
184 7 0.05
185 12 0.09
186 69 0.49
187 51 0.36
188 1 0.01
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.35
Consensus pattern (184 bp):
AAAAAAATAAAAATAAAAAAATTTGAGAATAAATACAAATTATCCAAGGATGAAATTTATAGAAA
TTTCAAATGGTAAATTTCTATAAAATTCTTAAGTGAGAAATTTCCTCTAAATTTAGCTCAAATTG
TGGAATAATTTAGATGAAATTTCAATAGCAATAATTAATATTTATTTTCAAATC
Found at i:23133771 original size:1 final size:1
Alignment explanation
Indices: 23133767--23133806 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
23133757 TTTTTTATCC
** *
23133767 TTTTTTTTTTTACTTTTTTTGTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
23133807 AAATTTTGAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.03, C:0.03, G:0.03, T:0.93
Consensus pattern (1 bp):
T
Found at i:23133784 original size:22 final size:22
Alignment explanation
Indices: 23133758--23133799 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
23133748 ACTAGATTTT
23133758 TTTTTATCCTTTTTTTTTTTAC
1 TTTTTATCCTTTTTTTTTTTAC
* **
23133780 TTTTTTTGTTTTTTTTTTTT
1 TTTTTATCCTTTTTTTTTTT
23133800 TTTTTTTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.05, C:0.07, G:0.02, T:0.86
Consensus pattern (22 bp):
TTTTTATCCTTTTTTTTTTTAC
Found at i:23133813 original size:21 final size:21
Alignment explanation
Indices: 23133767--23133813 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
23133757 TTTTTTATCC
*
23133767 TTTTTTTTTTTACTTTTTTT-G
1 TTTTTTTTTTTA-TTTTTTTAA
*
23133788 TTTTTTTTTTTTTTTTTTTAA
1 TTTTTTTTTTTATTTTTTTAA
*
23133809 ATTTT
1 TTTTT
23133814 GATCAAAGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.09, C:0.02, G:0.02, T:0.87
Consensus pattern (21 bp):
TTTTTTTTTTTATTTTTTTAA
Found at i:23133906 original size:104 final size:105
Alignment explanation
Indices: 23133780--23133996 Score: 328
Period size: 104 Copynumber: 2.1 Consensus size: 105
23133770 TTTTTTTTAC
* ** * *
23133780 TTTTTTTGTTTTTTTTTTTTTTTTTTTAAATTTTGATCAAAGCTCCTTTAAGCAGAGGCTCAACG
1 TTTTTTTG-TTTTTTTTATTTTTTTAAAAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACG
23133845 ACTTTAAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAA
65 ACTTTAAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAA
* *
23133886 TTTTTTTG-TTTTTTTATTTTTTTAAAAAATTTGATCAAAGCTTCTCTAAGCAGAGGCTCAATGA
1 TTTTTTTGTTTTTTTTATTTTTTTAAAAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACGA
* * *
23133950 CTTTGAGAAATATAAACAAAGCTCCTCTAAATAGAGGTAA
66 CTTTAAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAA
23133990 TTTTTTT
1 TTTTTTT
23133997 TTTAATTTTG
Statistics
Matches: 101, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
104 93 0.92
106 8 0.08
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.42
Consensus pattern (105 bp):
TTTTTTTGTTTTTTTTATTTTTTTAAAAAATTTGATCAAAGCTCCTCTAAGCAGAGGCTCAACGA
CTTTAAGAAACATAAACAAAGCTCCTCTAAACAGAGGTAA
Found at i:23134073 original size:42 final size:42
Alignment explanation
Indices: 23134013--23134153 Score: 210
Period size: 42 Copynumber: 3.4 Consensus size: 42
23134003 TTTGATCAAA
* * * * *
23134013 GCTCCTCTAAGCAGAGGCTCAATGATTTTGGAAAAATAAATG
1 GCTCCTCTAATCAAAGGCTCAACGAATTTAGAAAAATAAATG
*
23134055 GCTCCTCTAATCAAAGGCTCAACGAATTTAAAAAAATAAATG
1 GCTCCTCTAATCAAAGGCTCAACGAATTTAGAAAAATAAATG
* *
23134097 GCTCATCTAATCAAAGGCTCAACGACTTTAGAAAAATAAATG
1 GCTCCTCTAATCAAAGGCTCAACGAATTTAGAAAAATAAATG
23134139 GCTCCTCTAATCAAA
1 GCTCCTCTAATCAAA
23134154 AGTAATTTTT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (42 bp):
GCTCCTCTAATCAAAGGCTCAACGAATTTAGAAAAATAAATG
Found at i:23134320 original size:42 final size:41
Alignment explanation
Indices: 23134195--23134394 Score: 219
Period size: 41 Copynumber: 5.0 Consensus size: 41
23134185 TTTGATCAAA
* ** *
23134195 GCTCCTCTAAGCAGAGGCACCATGAC-TTCAAAA-T-AAAT
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAAAT
* *
23134233 GCT-CTCTAAACAGAAGCACCACAACTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAAAT
* * *
23134273 ACTCCTCTAAACAGAGGCACCTCAACTTTTGAAAAGGAAAAT
1 GCTCCTCTAAACAGAGGCACCACAAC-TTTGAAAAGTAAAAT
* * * *
23134315 GCTCCTCTAAATAGAGGCACCACAACTTTAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAAAT
* **
23134356 GCTCCTCTAAACAGAGACACCATGACTTTGAAAAGTAAA
1 GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAA
23134395 TTACTCATCA
Statistics
Matches: 133, Mismatches: 24, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
37 18 0.14
38 9 0.07
39 1 0.01
40 5 0.04
41 64 0.48
42 36 0.27
ACGTcount: A:0.41, C:0.23, G:0.14, T:0.22
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAAAT
Found at i:23134384 original size:83 final size:80
Alignment explanation
Indices: 23134195--23134395 Score: 246
Period size: 83 Copynumber: 2.5 Consensus size: 80
23134185 TTTGATCAAA
* * *
23134195 GCTCCTCTAAGCAGAGGCACCATGAC-TTCAAAA-TAAATGCTCTCTAAACAGAAGCACCACAAC
1 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAGAAAATGCTCTCTAAACAGAAGCACCACAAC
* *
23134258 TTTGAAAAGTAAATT
66 TTTAAAAAATAAATT
* * * *
23134273 ACTCCTCTAAACAGAGGCACC-TCAACTTTTGAAAAGGAAAATGCTCCTCTAAATAGAGGCACCA
1 GCTCCTCTAAACAGAGGCACCAT-GAC-TTTGAAAA-GAAAATGCT-CTCTAAACAGAAGCACCA
23134337 CAACTTTAAAAAATAAATT
62 CAACTTTAAAAAATAAATT
* *
23134356 GCTCCTCTAAACAGAGACACCATGACTTTGAAAAGTAAAT
1 GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAGAAAAT
23134396 TACTCATCAA
Statistics
Matches: 103, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 21 0.20
80 6 0.06
81 5 0.05
82 15 0.15
83 54 0.52
84 1 0.01
ACGTcount: A:0.41, C:0.23, G:0.13, T:0.22
Consensus pattern (80 bp):
GCTCCTCTAAACAGAGGCACCATGACTTTGAAAAGAAAATGCTCTCTAAACAGAAGCACCACAAC
TTTAAAAAATAAATT
Found at i:23140906 original size:38 final size:38
Alignment explanation
Indices: 23140852--23140928 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
23140842 CAAGAGACAG
23140852 GGGTACCAAAGACAAGAGTGCTTATGGAACTAAAGGCA
1 GGGTACCAAAGACAAGAGTGCTTATGGAACTAAAGGCA
*
23140890 GGGTACCAAAGGCAAGAGTGCTTATGGAACTAAAGGCA
1 GGGTACCAAAGACAAGAGTGCTTATGGAACTAAAGGCA
23140928 G
1 G
23140929 AGGTGCTCGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.38, C:0.16, G:0.31, T:0.16
Consensus pattern (38 bp):
GGGTACCAAAGACAAGAGTGCTTATGGAACTAAAGGCA
Found at i:23141794 original size:13 final size:13
Alignment explanation
Indices: 23141773--23141802 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
23141763 AAAAAATGAT
23141773 AAATATGAAATAA
1 AAATATGAAATAA
*
23141786 AAATCTGAAATAA
1 AAATATGAAATAA
23141799 AAAT
1 AAAT
23141803 GAATAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.03, G:0.07, T:0.23
Consensus pattern (13 bp):
AAATATGAAATAA
Found at i:23144696 original size:19 final size:18
Alignment explanation
Indices: 23144672--23144714 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
23144662 TTCGTTATTT
23144672 TATTATAAAGTAAATAAAA
1 TATTATAAAGTAAA-AAAA
* **
23144691 TATTATTATTTAAAAAAA
1 TATTATAAAGTAAAAAAA
23144709 TATTAT
1 TATTAT
23144715 CTTTAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (18 bp):
TATTATAAAGTAAAAAAA
Found at i:23150268 original size:20 final size:20
Alignment explanation
Indices: 23150243--23150281 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
23150233 CATGTCATAT
23150243 TTGATAAAAAAAATTAATTA
1 TTGATAAAAAAAATTAATTA
*
23150263 TTGATAAATAAAATTAATT
1 TTGATAAAAAAAATTAATT
23150282 TTTATATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
TTGATAAAAAAAATTAATTA
Found at i:23155181 original size:33 final size:32
Alignment explanation
Indices: 23155127--23155190 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
23155117 ATTATTATTT
* *
23155127 AAATTTAATAATTTATATATTTGTATCATATA
1 AAATTTAAAAATTTATATATTTATATCATATA
* *
23155159 AAATATTAAAAATTTATGTATTTATATTATAT
1 AAAT-TTAAAAATTTATATATTTATATCATAT
23155191 TTTATATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 4 0.15
33 23 0.85
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (32 bp):
AAATTTAAAAATTTATATATTTATATCATATA
Found at i:23155352 original size:15 final size:13
Alignment explanation
Indices: 23155332--23155369 Score: 51
Period size: 12 Copynumber: 2.8 Consensus size: 13
23155322 CGTGTTATTG
23155332 TATTATATTTTAAAT
1 TATTATATTTT--AT
23155347 TATTATA-TTTAT
1 TATTATATTTTAT
23155359 TATTATATTTT
1 TATTATATTTT
23155370 TTAATGAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 9 0.41
13 3 0.14
14 3 0.14
15 7 0.32
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTATATTTTAT
Found at i:23162809 original size:6 final size:6
Alignment explanation
Indices: 23162800--23162825 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
23162790 TACCCTCCCC
23162800 CTTTCT CTTTCT CTTTCT CTTTCT CT
1 CTTTCT CTTTCT CTTTCT CTTTCT CT
23162826 CTCCCTCTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (6 bp):
CTTTCT
Found at i:23163861 original size:2 final size:2
Alignment explanation
Indices: 23163849--23163890 Score: 66
Period size: 2 Copynumber: 21.0 Consensus size: 2
23163839 TTCATGCAGG
* *
23163849 TA TA TA AA TA TA TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23163891 CATTTAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:23171984 original size:20 final size:20
Alignment explanation
Indices: 23171959--23171997 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
23171949 AAATTGTGAT
23171959 TATTTGATTATTGTATTTTG
1 TATTTGATTATTGTATTTTG
23171979 TATTTGATTATTGTATTTT
1 TATTTGATTATTGTATTTT
23171998 CTTGGATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.67
Consensus pattern (20 bp):
TATTTGATTATTGTATTTTG
Found at i:23176155 original size:17 final size:17
Alignment explanation
Indices: 23176133--23176165 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
23176123 TGAAGTGAAA
23176133 AAGAATAAAGAATAAAC
1 AAGAATAAAGAATAAAC
23176150 AAGAATAAAGAATAAA
1 AAGAATAAAGAATAAA
23176166 GAAAAATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.73, C:0.03, G:0.12, T:0.12
Consensus pattern (17 bp):
AAGAATAAAGAATAAAC
Found at i:23176177 original size:7 final size:7
Alignment explanation
Indices: 23176178--23176222 Score: 81
Period size: 7 Copynumber: 6.4 Consensus size: 7
23176168 AAAATGAAAA
23176178 AAATGAG
1 AAATGAG
23176185 AAATGAG
1 AAATGAG
23176192 AAATGAG
1 AAATGAG
23176199 AAATGAG
1 AAATGAG
23176206 AAATGAG
1 AAATGAG
*
23176213 AAATGTG
1 AAATGAG
23176220 AAA
1 AAA
23176223 AAAAATAGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 37 1.00
ACGTcount: A:0.58, C:0.00, G:0.27, T:0.16
Consensus pattern (7 bp):
AAATGAG
Found at i:23176501 original size:21 final size:22
Alignment explanation
Indices: 23176471--23176517 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
23176461 AGTGATTGAC
* *
23176471 TTTTATTCATTTTTGATTTATT
1 TTTTATTCATATTTCATTTATT
*
23176493 TTTTA-TCATATTTCTTTTATT
1 TTTTATTCATATTTCATTTATT
23176514 TTTT
1 TTTT
23176518 CAATAATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (22 bp):
TTTTATTCATATTTCATTTATT
Found at i:23177975 original size:17 final size:18
Alignment explanation
Indices: 23177955--23177992 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
23177945 CTTTTGTAAA
23177955 CTTAAA-TCTTTGCGAAT
1 CTTAAATTCTTTGCGAAT
* *
23177972 CTTAAATTTTTTGCGATT
1 CTTAAATTCTTTGCGAAT
23177990 CTT
1 CTT
23177993 TACAATTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.50
Consensus pattern (18 bp):
CTTAAATTCTTTGCGAAT
Found at i:23178097 original size:19 final size:19
Alignment explanation
Indices: 23178072--23178243 Score: 87
Period size: 19 Copynumber: 9.4 Consensus size: 19
23178062 AATCTCCTAT
23178072 GAATCTTTGAATTCTTTGC
1 GAATCTTTGAATTCTTTGC
* * *
23178091 AAATC-TTGAATTTTTTTAC
1 GAATCTTTGAA-TTCTTTGC
23178110 GAAT-TTTGAATCTCTTGTGC
1 GAATCTTTGAAT-TCTT-TGC
* * *
23178130 --ATTTTTTAATTTTTTGC
1 GAATCTTTGAATTCTTTGC
23178147 GAATCTTTGAA-TCTTTGC
1 GAATCTTTGAATTCTTTGC
* * **
23178165 TAATC-TTGAATTTTTTAT
1 GAATCTTTGAATTCTTTGC
* *
23178183 GAATCCTTGAA-TCTTTTAC
1 GAATCTTTGAATTC-TTTGC
* *
23178202 GAATC-TTGAATTGTTT-A
1 GAATCTTTGAATTCTTTGC
*
23178219 GAATC-TTGAA-TCTTTTGT
1 GAATCTTTGAATTC-TTTGC
23178237 GAATCTT
1 GAATCTT
23178244 GAAATTTTAA
Statistics
Matches: 117, Mismatches: 22, Indels: 28
0.70 0.13 0.17
Matches are distributed among these distances:
16 1 0.01
17 21 0.18
18 43 0.37
19 50 0.43
20 2 0.02
ACGTcount: A:0.24, C:0.12, G:0.13, T:0.51
Consensus pattern (19 bp):
GAATCTTTGAATTCTTTGC
Found at i:23178101 original size:18 final size:18
Alignment explanation
Indices: 23178072--23178282 Score: 103
Period size: 18 Copynumber: 11.6 Consensus size: 18
23178062 AATCTCCTAT
23178072 GAATCTTTGAATTCTTTGC
1 GAATC-TTGAATTCTTTGC
* * *
23178091 AAATCTTGAATTTTTTTAC
1 GAATCTTGAA-TTCTTTGC
*
23178110 GAATTTTGAATCTCTTGTGC
1 GAATCTTGAAT-TCTT-TGC
* * * *
23178130 -ATTTTTTAATTTTTTGC
1 GAATCTTGAATTCTTTGC
23178147 GAATCTTTGAA-TCTTTGC
1 GAATC-TTGAATTCTTTGC
* * **
23178165 TAATCTTGAATTTTTTAT
1 GAATCTTGAATTCTTTGC
*
23178183 GAATCCTTGAA-TCTTTTAC
1 GAAT-CTTGAATTC-TTTGC
* *
23178202 GAATCTTGAATTGTTT-A
1 GAATCTTGAATTCTTTGC
*
23178219 GAATCTTGAA-TCTTTTGT
1 GAATCTTGAATTC-TTTGC
* **
23178237 GAATCTTGAAAT-TTTAA
1 GAATCTTGAATTCTTTGC
23178254 GAATCTTGAA-TCTTTTGC
1 GAATCTTGAATTC-TTTGC
* *
23178272 TAACCTTGAAT
1 GAATCTTGAAT
23178283 CACTTATGAA
Statistics
Matches: 146, Mismatches: 31, Indels: 30
0.71 0.15 0.14
Matches are distributed among these distances:
16 2 0.01
17 34 0.23
18 59 0.40
19 49 0.34
20 2 0.01
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (18 bp):
GAATCTTGAATTCTTTGC
Found at i:23178118 original size:37 final size:37
Alignment explanation
Indices: 23178072--23178251 Score: 135
Period size: 37 Copynumber: 4.9 Consensus size: 37
23178062 AATCTCCTAT
23178072 GAATCTTTGAATTCTTTGCAAATCTTGAATTTTTTTAC
1 GAATCTTTGAATTCTTTGC-AATCTTGAATTTTTTTAC
* * * *
23178110 GAAT-TTTGAATCTCTTGTGCATTTTTTAA-TTTTTTGC
1 GAATCTTTGAAT-TCTT-TGCAATCTTGAATTTTTTTAC
*
23178147 GAATCTTTGAA-TCTTTGCTAATCTTGAA-TTTTTTAT
1 GAATCTTTGAATTCTTTGC-AATCTTGAATTTTTTTAC
* * *
23178183 GAATCCTTGAA-TCTTTTACGAATCTTGAA-TTGTTTA-
1 GAATCTTTGAATTC-TTTGC-AATCTTGAATTTTTTTAC
* *
23178219 GAATC-TTGAA-TCTTTTGTGAATCTTGAAATTTT
1 GAATCTTTGAATTC-TTTG-CAATCTTGAATTTTT
23178252 AAGAATCTTG
Statistics
Matches: 119, Mismatches: 16, Indels: 16
0.79 0.11 0.11
Matches are distributed among these distances:
35 23 0.19
36 36 0.30
37 37 0.31
38 20 0.17
39 3 0.03
ACGTcount: A:0.25, C:0.12, G:0.13, T:0.51
Consensus pattern (37 bp):
GAATCTTTGAATTCTTTGCAATCTTGAATTTTTTTAC
Found at i:23178234 original size:35 final size:34
Alignment explanation
Indices: 23178072--23178282 Score: 158
Period size: 35 Copynumber: 5.9 Consensus size: 34
23178062 AATCTCCTAT
*
23178072 GAATCTTTGAAT-TCTTTGCAAATCTTGAATTTTTTTA
1 GAATC-TTGAATCT-TTTGCGAATCTTGAA--TTTTTA
* * * * *
23178109 CGAATTTTGAATCTCTTGTGC-ATTTTTTAATTTTTTGC
1 -GAATCTTGAATCT-TT-TGCGAATCTTGAA-TTTTT-A
*
23178147 GAATCTTTGAATC-TTTGCTAATCTTGAATTTTTTA
1 GAATC-TTGAATCTTTTGCGAATCTTGAA-TTTTTA
*
23178182 TGAATCCTTGAATCTTTTACGAATCTTGAATTGTTTA
1 -GAAT-CTTGAATCTTTTGCGAATCTTGAATT-TTTA
* *
23178219 GAATCTTGAATCTTTTGTGAATCTTGAAATTTTAA
1 GAATCTTGAATCTTTTGCGAATCTTG-AATTTTTA
* *
23178254 GAATCTTGAATCTTTTGCTAACCTTGAAT
1 GAATCTTGAATCTTTTGCGAATCTTGAAT
23178283 CACTTATGAA
Statistics
Matches: 145, Mismatches: 18, Indels: 24
0.78 0.10 0.13
Matches are distributed among these distances:
34 3 0.02
35 49 0.34
36 35 0.24
37 34 0.23
38 21 0.14
39 3 0.02
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (34 bp):
GAATCTTGAATCTTTTGCGAATCTTGAATTTTTA
Found at i:23178434 original size:36 final size:36
Alignment explanation
Indices: 23178340--23178434 Score: 86
Period size: 36 Copynumber: 2.6 Consensus size: 36
23178330 TGCAAATGAG
* *
23178340 AAAT-TTTGAACTTTTTTGTGAATCTTTGAACTTTTAC
1 AAATCTTTGAAC--TTTTGTGAATCTTTGAAATTCTAC
* * * * *
23178377 AAATTTTTTAATTTTTTTGAATCTTTGAAATCTCTGC
1 AAATCTTTGAACTTTTGTGAATCTTTGAAAT-TCTAC
23178414 -AATCTTTGAACTTTTGTGAAT
1 AAATCTTTGAACTTTTGTGAAT
23178435 TTTTAATTTT
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
36 34 0.74
37 7 0.15
38 5 0.11
ACGTcount: A:0.27, C:0.11, G:0.11, T:0.52
Consensus pattern (36 bp):
AAATCTTTGAACTTTTGTGAATCTTTGAAATTCTAC
Found at i:23178451 original size:17 final size:18
Alignment explanation
Indices: 23178418--23178463 Score: 67
Period size: 17 Copynumber: 2.6 Consensus size: 18
23178408 CTCTGCAATC
* *
23178418 TTTGAACTTTTGTGAATT
1 TTTGAATTTTTGAGAATT
23178436 TTT-AATTTTTGAGAATT
1 TTTGAATTTTTGAGAATT
23178453 TTTGAATTTTT
1 TTTGAATTTTT
23178464 ATGAATCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.24, C:0.02, G:0.13, T:0.61
Consensus pattern (18 bp):
TTTGAATTTTTGAGAATT
Done.