Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 12 of 127
Found at i:2723752 original size:122 final size:121
Alignment explanation
Indices: 2723536--2723880 Score: 458
Period size: 122 Copynumber: 2.9 Consensus size: 121
2723526 TTTAACGTAA
* * *
2723536 AAAAAAAAAAAAGGTTTT-GAGAAAAAGTTGAAAGTATTAA-TTTTCTTTAAAAAATAAATTTTC
1 AAAAAAAAAATA-TTTTTGGAG-AAAAGTTGAAAGTATCAATTTTTC-TT--AAAATAAATTTTC
*
2723599 -AAAAATGG-GTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAA-TTC
61 AAAAAATGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAATTTC
2723657 AAAAAAAAAAATATTTTTAGG-GAAAAGTTGAAAGTATCAATTTTTCTTAAGAATAAATTTTCAA
1 -AAAAAAAAAATATTTTT-GGAGAAAAGTTGAAAGTATCAATTTTTCTTAA-AATAAATTTTCAA
* *
2723721 AAAATGGTTTTTTTGAGGAAAAGTTAAAAGTATCAATTTTTCTCGAAATTAAAAATTTC
63 AAAATGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAATTTC
*
2723780 AAAAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAATTAAAGTTTCAAAA
1 AAAAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAA-TAAATTTTCAAAA
* *
2723845 AA---TATTTTGGA-AAAAAGTTGAAAGTATCAATTTTTC
65 AATGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
2723881 CTTGTATAAA
Statistics
Matches: 204, Mismatches: 10, Indels: 22
0.86 0.04 0.09
Matches are distributed among these distances:
118 23 0.11
119 9 0.04
120 11 0.05
121 35 0.17
122 122 0.60
123 4 0.02
ACGTcount: A:0.47, C:0.05, G:0.13, T:0.35
Consensus pattern (121 bp):
AAAAAAAAAATATTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAATAAATTTTCAAAAA
ATGGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTCGAAATTAAAAATTTC
Found at i:2724650 original size:21 final size:21
Alignment explanation
Indices: 2724611--2724651 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
2724601 GTTGAGTATA
* *
2724611 AATAAAATTTTTTATTAAAAT
1 AATAAAAATTTTTAGTAAAAT
*
2724632 AATAAAAATTTTTGGTAAAA
1 AATAAAAATTTTTAGTAAAA
2724652 ACGCAATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (21 bp):
AATAAAAATTTTTAGTAAAAT
Found at i:2725924 original size:44 final size:43
Alignment explanation
Indices: 2725853--2725946 Score: 102
Period size: 44 Copynumber: 2.2 Consensus size: 43
2725843 ACAAGGCAAA
* *
2725853 TAAATAAAAATAAGATCTGAATATTTA-TGATTTTTTGGTTGGT
1 TAAATAAAAATAAGATCTGAAGATTTATTG-TTTGTTGGTTGGT
* * *
2725896 TAAATGAAAAGTAAGATTTGAAGCTTTATTGTTTGTTGGTT-GT
1 TAAAT-AAAAATAAGATCTGAAGATTTATTGTTTGTTGGTTGGT
2725939 ATAAATAA
1 -TAAATAA
2725947 TTTGAAATTA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
43 9 0.21
44 32 0.74
45 2 0.05
ACGTcount: A:0.37, C:0.02, G:0.18, T:0.43
Consensus pattern (43 bp):
TAAATAAAAATAAGATCTGAAGATTTATTGTTTGTTGGTTGGT
Found at i:2734417 original size:14 final size:15
Alignment explanation
Indices: 2734400--2734435 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
2734390 ATTTTTTATT
2734400 AAATTTA-TTTTAAA
1 AAATTTATTTTTAAA
*
2734414 AAATATATTTTTAAA
1 AAATTTATTTTTAAA
2734429 AAATTTA
1 AAATTTA
2734436 ACTAATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AAATTTATTTTTAAA
Found at i:2737995 original size:24 final size:22
Alignment explanation
Indices: 2737968--2738012 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
2737958 GTCAAGATGT
*
2737968 CAAAGGATTAATATTTCTATAAAC
1 CAAAAGATTAAT-TTTC-ATAAAC
*
2737992 CAAAATATTAATTTTCATAAA
1 CAAAAGATTAATTTTCATAAA
2738013 GATTTTCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 4 0.21
24 10 0.53
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (22 bp):
CAAAAGATTAATTTTCATAAAC
Found at i:2742000 original size:14 final size:14
Alignment explanation
Indices: 2741981--2742015 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
2741971 AAAGTTAAAA
2741981 TTCTTTTCTATTAT
1 TTCTTTTCTATTAT
*
2741995 TTCTTTTCTCTTAT
1 TTCTTTTCTATTAT
*
2742009 TTATTTT
1 TTCTTTT
2742016 TTCTAACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.14, G:0.00, T:0.74
Consensus pattern (14 bp):
TTCTTTTCTATTAT
Found at i:2745103 original size:18 final size:18
Alignment explanation
Indices: 2745080--2745124 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
2745070 ATGAATGAGA
*
2745080 AAAAAACTCATTAAT-TAT
1 AAAAAA-TCATAAATATAT
*
2745098 AAAAAATTATAAATATAT
1 AAAAAATCATAAATATAT
2745116 AAAAAATCA
1 AAAAAATCA
2745125 GTCTCACTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 6 0.26
18 17 0.74
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAAATCATAAATATAT
Found at i:2751699 original size:18 final size:19
Alignment explanation
Indices: 2751657--2751699 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
2751647 AAATATTTTA
2751657 TTAATTAAAATAATAAAAT
1 TTAATTAAAATAATAAAAT
* *
2751676 AT-ATTAAAATTA-AAAAT
1 TTAATTAAAATAATAAAAT
2751693 TTAATTA
1 TTAATTA
2751700 CGCTCATGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
17 6 0.30
18 13 0.65
19 1 0.05
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TTAATTAAAATAATAAAAT
Found at i:2753594 original size:122 final size:124
Alignment explanation
Indices: 2753362--2753611 Score: 380
Period size: 122 Copynumber: 2.0 Consensus size: 124
2753352 AAGCTAAAAA
*
2753362 TCAAGCCAAACTTTTTTTATTATAATTAAATCGGTGTACTTGAAAATAAAACAAGGATGATGATG
1 TCAAGCCAAACTTTTTTTATTATAATTAAATCGGTATACTTGAAAATAAAACAA-GATGATGATG
* *
2753427 ATGACGATAACGACATATGTTTTTGTGTCGATATCAAAGAGGAGACTTTGAAGCTTTTAAAT
65 ACGACG--AACGACATACGTTTTTGTGTCGATATCAAAGAGGAGACTTTGAAGCTTTTAAAT
* * *
2753489 TCAAGCCAAACTTTTTTTTATTATAATTAAATTGGTATGCTTGAAAATAAAA-TA-ATGATGATG
1 TCAAGCCAAAC-TTTTTTTATTATAATTAAATCGGTATACTTGAAAATAAAACAAGATGATGATG
*
2753552 ACGACG-ACGACGTACGTTTTTGTGTCGATATCAAAGAGGAGACTTTGAAGCTTTTAAAT
65 ACGACGAACGACATACGTTTTTGTGTCGATATCAAAGAGGAGACTTTGAAGCTTTTAAAT
2753611 T
1 T
2753612 TTATGTTCAA
Statistics
Matches: 115, Mismatches: 7, Indels: 7
0.89 0.05 0.05
Matches are distributed among these distances:
122 52 0.45
125 14 0.12
127 12 0.10
128 37 0.32
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (124 bp):
TCAAGCCAAACTTTTTTTATTATAATTAAATCGGTATACTTGAAAATAAAACAAGATGATGATGA
CGACGAACGACATACGTTTTTGTGTCGATATCAAAGAGGAGACTTTGAAGCTTTTAAAT
Found at i:2757476 original size:2 final size:2
Alignment explanation
Indices: 2757469--2757494 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2757459 AAGCACTCCA
2757469 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
2757495 AGAGTCCGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:2757541 original size:16 final size:15
Alignment explanation
Indices: 2757509--2757648 Score: 105
Period size: 16 Copynumber: 9.3 Consensus size: 15
2757499 TCCGTATAGT
2757509 ATATCATTAATAAATA
1 ATAT-ATTAATAAATA
*
2757525 ATATACTAATAATATA
1 ATATATTAATAA-ATA
2757541 ATATATTAATAAAT-
1 ATATATTAATAAATA
2757555 AT-TATTAATAAATA
1 ATATATTAATAAATA
*
2757569 ATAT-TATAATATATTA
1 ATATAT-TAATA-AATA
* *
2757585 ATAAATGATACA-AAAGA
1 ATATAT--TA-ATAAATA
*
2757602 ATA-ATAAATAATATA
1 ATATATTAATAA-ATA
*
2757617 ATATGTTAATAAAT-
1 ATATATTAATAAATA
2757631 AT-TATTAATAAATA
1 ATATATTAATAAATA
2757645 ATAT
1 ATAT
2757649 TATAATATAT
Statistics
Matches: 100, Mismatches: 11, Indels: 27
0.72 0.08 0.20
Matches are distributed among these distances:
13 22 0.22
14 12 0.12
15 23 0.23
16 32 0.32
17 6 0.06
18 4 0.04
19 1 0.01
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (15 bp):
ATATATTAATAAATA
Found at i:2757577 original size:36 final size:36
Alignment explanation
Indices: 2757531--2757667 Score: 170
Period size: 36 Copynumber: 3.7 Consensus size: 36
2757521 AATAATATAC
*
2757531 TAATAATATAATATATTAATAAATATTATTAATAAA
1 TAATATTATAATATATTAATAAATATTATTAATAAA
* *
2757567 TAATATTATAATATATTAATAAATGA-TA-CAAAAGAA
1 TAATATTATAATATATTAATAAAT-ATTATTAATA-AA
*
2757603 TAATAAATAATATAATATGTTAATAAATATTATTAATAAA
1 TAAT--AT--TATAATATATTAATAAATATTATTAATAAA
2757643 TAATATTATAATATATTAATAAATA
1 TAATATTATAATATATTAATAAATA
2757668 ATATAAAAGA
Statistics
Matches: 86, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
35 3 0.03
36 49 0.57
37 1 0.01
38 4 0.05
39 1 0.01
40 25 0.29
41 3 0.03
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.39
Consensus pattern (36 bp):
TAATATTATAATATATTAATAAATATTATTAATAAA
Found at i:2757651 original size:76 final size:76
Alignment explanation
Indices: 2757532--2757687 Score: 285
Period size: 76 Copynumber: 2.1 Consensus size: 76
2757522 ATAATATACT
*
2757532 AATAATATAATATATTAATAAATATTATTAATAAATAATATTATAATATATTAATAAATGATACA
1 AATAATATAATATATTAATAAATATTATTAATAAATAATATTATAATATATTAATAAATAATACA
2757597 AAAGAATAATA
66 AAAGAATAATA
* *
2757608 AATAATATAATATGTTAATAAATATTATTAATAAATAATATTATAATATATTAATAAATAATATA
1 AATAATATAATATATTAATAAATATTATTAATAAATAATATTATAATATATTAATAAATAATACA
2757673 AAAGAATAATA
66 AAAGAATAATA
2757684 AATA
1 AATA
2757688 GTTTTATTTT
Statistics
Matches: 77, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.60, C:0.01, G:0.03, T:0.37
Consensus pattern (76 bp):
AATAATATAATATATTAATAAATATTATTAATAAATAATATTATAATATATTAATAAATAATACA
AAAGAATAATA
Found at i:2757681 original size:36 final size:36
Alignment explanation
Indices: 2757531--2757683 Score: 166
Period size: 36 Copynumber: 4.1 Consensus size: 36
2757521 AATAATATAC
* * *
2757531 TAATAATATAATATATTAATAAATATTATTAATAAA
1 TAATATTATAATATATTAATAAATAATATTAAAAAA
* *
2757567 TAATATTATAATATATTAATAAATGATA-CAAAAGAA
1 TAATATTATAATATATTAATAAATAATATTAAAA-AA
* * *
2757603 TAATAAATAATATAATATGTTAATAAATATTATTAATAAA
1 TAAT--AT--TATAATATATTAATAAATAATATTAAAAAA
2757643 TAATATTATAATATATTAATAAATAATA-TAAAAGAA
1 TAATATTATAATATATTAATAAATAATATTAAAA-AA
2757679 TAATA
1 TAATA
2757684 AATAGTTTTA
Statistics
Matches: 97, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
35 7 0.07
36 58 0.60
38 4 0.04
40 25 0.26
41 3 0.03
ACGTcount: A:0.59, C:0.01, G:0.03, T:0.38
Consensus pattern (36 bp):
TAATATTATAATATATTAATAAATAATATTAAAAAA
Found at i:2757752 original size:31 final size:31
Alignment explanation
Indices: 2757717--2757802 Score: 88
Period size: 34 Copynumber: 2.7 Consensus size: 31
2757707 TTATATTAAC
*
2757717 ATAATATTTTAATATTAAATATTATCAA-AAT
1 ATAATATTTTAATAGTAAATATT-TCAATAAT
2757748 ATAATTATTTTTTAATAGT-AATAATTTCAATAAT
1 ATAA-TA--TTTTAATAGTAAAT-ATTTCAATAAT
2757782 A-AATAATTTTAATAGTAAATA
1 ATAAT-ATTTTAATAGTAAATA
2757803 ATTTTTAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 14
0.76 0.02 0.23
Matches are distributed among these distances:
31 15 0.32
32 6 0.13
33 10 0.21
34 16 0.34
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (31 bp):
ATAATATTTTAATAGTAAATATTTCAATAAT
Found at i:2757807 original size:16 final size:16
Alignment explanation
Indices: 2757757--2757812 Score: 78
Period size: 16 Copynumber: 3.5 Consensus size: 16
2757747 TATAATTATT
2757757 TTTTAATAGT-AATAA
1 TTTTAATAGTAAATAA
* *
2757772 TTTCAATAATAAATAA
1 TTTTAATAGTAAATAA
2757788 TTTTAATAGTAAATAA
1 TTTTAATAGTAAATAA
2757804 TTTTTAATA
1 -TTTTAATA
2757813 TTTTAATTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
15 8 0.23
16 19 0.54
17 8 0.23
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (16 bp):
TTTTAATAGTAAATAA
Found at i:2764891 original size:22 final size:22
Alignment explanation
Indices: 2764865--2764910 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
2764855 TTTTTACATA
2764865 TTATTAATTT-TTATATTAAATT
1 TTATTAATTTATT-TATTAAATT
*
2764887 TTATTAATTTATTTTTTAAATT
1 TTATTAATTTATTTATTAAATT
2764909 TT
1 TT
2764911 TTATTAAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (22 bp):
TTATTAATTTATTTATTAAATT
Found at i:2764917 original size:12 final size:12
Alignment explanation
Indices: 2764865--2764937 Score: 55
Period size: 12 Copynumber: 6.2 Consensus size: 12
2764855 TTTTTACATA
2764865 TTATT-AATTTT
1 TTATTAAATTTT
2764876 TATATTAAA--TT
1 T-TATTAAATTTT
2764887 TTATT-AATTTAT
1 TTATTAAATTT-T
*
2764899 TTTTTAAATTTT
1 TTATTAAATTTT
**
2764911 TTATTAAAACTT
1 TTATTAAATTTT
*
2764923 TTCTTAAATTATT
1 TTATTAAATT-TT
2764936 TT
1 TT
2764938 TAATAAAAAA
Statistics
Matches: 48, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
9 2 0.04
10 4 0.08
11 5 0.10
12 26 0.54
13 11 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (12 bp):
TTATTAAATTTT
Found at i:2767114 original size:22 final size:22
Alignment explanation
Indices: 2767072--2767119 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 22
2767062 AATGTGATAT
2767072 ATTTTATATAAAATTTTATTG-A
1 ATTTTATAT-AAATTTTATTGTA
2767094 ATTTTATAT-AATTTTAAATTGTA
1 ATTTTATATAAATTTT--ATTGTA
2767117 ATT
1 ATT
2767120 CATTAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 6 0.26
22 13 0.57
23 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (22 bp):
ATTTTATATAAATTTTATTGTA
Found at i:2767615 original size:24 final size:25
Alignment explanation
Indices: 2767557--2767615 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
2767547 TTTATTTTTG
* *
2767557 ATATTAAAAATCATAAAATTTTAATT
1 ATATTAAAAAT-ATAAAATGTTAAAT
* *
2767583 TTATAAAAAAT-TAAAATGTTAAAT
1 ATATTAAAAATATAAAATGTTAAAT
2767607 ATATTAAAA
1 ATATTAAAA
2767616 TCAAAATTCT
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
24 18 0.67
26 9 0.33
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.39
Consensus pattern (25 bp):
ATATTAAAAATATAAAATGTTAAAT
Found at i:2770644 original size:59 final size:57
Alignment explanation
Indices: 2770547--2770749 Score: 216
Period size: 59 Copynumber: 3.5 Consensus size: 57
2770537 TCTCACATTG
* *
2770547 AAAAAATATGTGAATATGATATGATATATATGTAGAGATCTAAATTCAATTATATATT
1 AAAAAATATGTGGATATGATATGATATATATGTAGAGATCTAAA-TCAATCATATATT
* * * * *
2770605 AAAAGAATGTGTGGATATGATATGATATATGTGTAGAGATTTAAA-C--TCACAT-TG
1 AAAA-AATATGTGGATATGATATGATATATATGTAGAGATCTAAATCAATCATATATT
* * * *
2770659 AAAAAATATATGGATTTGATATGATATATATGTAAAGATCTAAATCCAATCCTATATT
1 AAAAAATATGTGGATATGATATGATATATATGTAGAGATCTAAAT-CAATCATATATT
* *
2770717 AAAAGTATGTGTGGATATGATATGATATGATAT
1 AAAA-AATATGTGGATATGATATGATAT-ATAT
2770750 ATATATATAT
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
53 34 0.29
54 5 0.04
55 5 0.04
57 5 0.04
58 9 0.08
59 55 0.47
60 4 0.03
ACGTcount: A:0.43, C:0.05, G:0.16, T:0.36
Consensus pattern (57 bp):
AAAAAATATGTGGATATGATATGATATATATGTAGAGATCTAAATCAATCATATATT
Found at i:2770684 original size:112 final size:112
Alignment explanation
Indices: 2770538--2770744 Score: 342
Period size: 112 Copynumber: 1.8 Consensus size: 112
2770528 TGTCCCCAAT
* * * *
2770538 CTCACATTGAAAAAATATGTGAATATGATATGATATATATGTAGAGATCTAAATTCAATTATATA
1 CTCACATTGAAAAAATATATGAATATGATATGATATATATGTAAAGATCTAAATCCAATCATATA
2770603 TTAAAAGAATGTGTGGATATGATATGATATATGTGTAGAGATTTAAA
66 TTAAAAGAATGTGTGGATATGATATGATATATGTGTAGAGATTTAAA
* * *
2770650 CTCACATTGAAAAAATATATGGATTTGATATGATATATATGTAAAGATCTAAATCCAATCCTATA
1 CTCACATTGAAAAAATATATGAATATGATATGATATATATGTAAAGATCTAAATCCAATCATATA
*
2770715 TTAAAAGTATGTGTGGATATGATATGATAT
66 TTAAAAGAATGTGTGGATATGATATGATAT
2770745 GATATATATA
Statistics
Matches: 87, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
112 87 1.00
ACGTcount: A:0.42, C:0.06, G:0.16, T:0.36
Consensus pattern (112 bp):
CTCACATTGAAAAAATATATGAATATGATATGATATATATGTAAAGATCTAAATCCAATCATATA
TTAAAAGAATGTGTGGATATGATATGATATATGTGTAGAGATTTAAA
Found at i:2770855 original size:62 final size:63
Alignment explanation
Indices: 2770772--2770957 Score: 267
Period size: 61 Copynumber: 3.0 Consensus size: 63
2770762 ATAGAGAGAG
*
2770772 AGAGATCTAAAACC-ACTTTGAAAAAATGAAAAAAATATGTAGG-TATGATATGATATATATGT
1 AGAGATCT-AAACCTACATTGAAAAAATGAAAAAAATATGTAGGATATGATATGATATATATGT
* **
2770834 AGAGATCTAAACCTACATTGAAAAAATG-AAAAAATATGT-GGATATAATATGGCATATATGT
1 AGAGATCTAAACCTACATTGAAAAAATGAAAAAAATATGTAGGATATGATATGATATATATGT
*
2770895 AGAGGTCTAAACCTACATTGAAAAAAT-AAAAAAA-ATGTATGGATATGATATGATATATATGT
1 AGAGATCTAAACCTACATTGAAAAAATGAAAAAAATATGTA-GGATATGATATGATATATATGT
2770957 A
1 A
2770958 TTGAAAATAA
Statistics
Matches: 111, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
60 6 0.05
61 64 0.58
62 41 0.37
ACGTcount: A:0.48, C:0.07, G:0.16, T:0.28
Consensus pattern (63 bp):
AGAGATCTAAACCTACATTGAAAAAATGAAAAAAATATGTAGGATATGATATGATATATATGT
Found at i:2770968 original size:44 final size:43
Alignment explanation
Indices: 2770917--2771000 Score: 132
Period size: 44 Copynumber: 1.9 Consensus size: 43
2770907 CTACATTGAA
* *
2770917 AAAATAAAAAAAATGTATGGATATGATATGATATATATGTATTG
1 AAAATAAAAAAAATATATGGATATGACATGATATA-ATGTATTG
*
2770961 AAAATAAAAAAAATATGTGGATATGACATGATATAATGTA
1 AAAATAAAAAAAATATATGGATATGACATGATATAATGTA
2771001 AAAATTTAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
43 5 0.14
44 32 0.86
ACGTcount: A:0.52, C:0.01, G:0.15, T:0.31
Consensus pattern (43 bp):
AAAATAAAAAAAATATATGGATATGACATGATATAATGTATTG
Found at i:2774682 original size:2 final size:2
Alignment explanation
Indices: 2774675--2774703 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
2774665 CAAAACAATA
2774675 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2774704 TAATGTTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2788613 original size:29 final size:30
Alignment explanation
Indices: 2788581--2788648 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
2788571 TTTAATTTTT
*
2788581 TATTTAAAT-GAAA-ATAAAAATATATATTA
1 TATTTAAATAGAAAGATAAAAATA-ATATGA
*
2788610 TATTATAAATATAAAGATAAAAATAATATGA
1 TATT-TAAATAGAAAGATAAAAATAATATGA
2788641 T-TTTAAAT
1 TATTTAAAT
2788649 TTTTTACATA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
29 9 0.26
30 7 0.21
31 9 0.26
32 9 0.26
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.38
Consensus pattern (30 bp):
TATTTAAATAGAAAGATAAAAATAATATGA
Found at i:2788773 original size:23 final size:23
Alignment explanation
Indices: 2788736--2788781 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
2788726 GTAAATAGAT
2788736 TTTTTATTAAATAATATA-AATTA
1 TTTTTATTAAATAAT-TAGAATTA
2788759 TTTTT-TTAAATTAATTAGAATTA
1 TTTTTATTAAA-TAATTAGAATTA
2788782 ATATATGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTTTATTAAATAATTAGAATTA
Found at i:2799223 original size:3 final size:3
Alignment explanation
Indices: 2799210--2799258 Score: 89
Period size: 3 Copynumber: 16.3 Consensus size: 3
2799200 GTCTCCAGTC
*
2799210 CTT CCT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
2799258 C
1 C
2799259 ACGAAGAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
CTT
Found at i:2807497 original size:37 final size:36
Alignment explanation
Indices: 2807434--2807507 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 36
2807424 TTGTGTTTTA
* *
2807434 ATATTATATAAAATATTAAAATTTATATATTTATATT
1 ATATTATATAAAAAATTAAAATTTATA-ATTAATATT
* *
2807471 ATATTTTATAAAAAATT-ATATGTTATAATTAATATT
1 ATATTATATAAAAAATTAAAAT-TTATAATTAATATT
2807507 A
1 A
2807508 ATACGAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
36 12 0.38
37 20 0.62
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.50
Consensus pattern (36 bp):
ATATTATATAAAAAATTAAAATTTATAATTAATATT
Found at i:2810875 original size:19 final size:20
Alignment explanation
Indices: 2810851--2810894 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
2810841 TCCGGTCAAC
2810851 TTCCGACGA-AATTTCCAGA
1 TTCCGACGATAATTTCCAGA
* *
2810870 TTCCGATGATATTTTCCAGA
1 TTCCGACGATAATTTCCAGA
*
2810890 ATCCG
1 TTCCG
2810895 GCACCGGTGT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (20 bp):
TTCCGACGATAATTTCCAGA
Found at i:2811498 original size:117 final size:117
Alignment explanation
Indices: 2811346--2811803 Score: 667
Period size: 123 Copynumber: 3.9 Consensus size: 117
2811336 AAAAAATTCT
2811346 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAATAAATTTCCAAAAA
1 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCCAAAAA
** *
2811410 ATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTTAGAAATAAACTTCCA
66 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCA
*
2811462 AAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAG-AAATAAATTTCCAAAA
1 AAAAA-ATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCCAAAA
* *
2811526 AATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTCA
65 AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
2811579 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCCA
1 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG-AAAATAAATTTCC-
*
2811644 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCA
61 -AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTCA
***
2811703 AAAAAA-GGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCCAA
1 AAAAAATATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAAT--AAATTTCCAA
*
2811765 AAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
63 AAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
2811804 CTAAAAAAAA
Statistics
Matches: 316, Mismatches: 13, Indels: 24
0.90 0.04 0.07
Matches are distributed among these distances:
116 44 0.14
117 70 0.22
118 83 0.26
119 3 0.01
120 8 0.03
121 12 0.04
122 1 0.00
123 84 0.27
124 11 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (117 bp):
AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAATAAATTTCCAAAAA
ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCA
Found at i:2811617 original size:59 final size:58
Alignment explanation
Indices: 2811346--2811803 Score: 604
Period size: 59 Copynumber: 7.7 Consensus size: 58
2811336 AAAAAATTCT
*
2811346 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
* ** *
2811404 -CAAAAAATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTTAGAAATAAACTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC
*
2811461 AAAAAATATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTC
1 AAAAAA-A-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
* * *
2811521 -CAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
2811578 AAAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCC
1 AAAAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTT-C
*
2811643 AAAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAA-TTTC
***
2811702 AAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTC
1 AAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTC
* *
2811762 -CAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
2811804 CTAAAAAAAA
Statistics
Matches: 357, Mismatches: 24, Indels: 37
0.85 0.06 0.09
Matches are distributed among these distances:
56 41 0.11
57 58 0.16
58 12 0.03
59 128 0.36
60 14 0.04
61 47 0.13
62 2 0.01
64 47 0.13
65 8 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (58 bp):
AAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTC
Found at i:2811761 original size:241 final size:233
Alignment explanation
Indices: 2811346--2811803 Score: 681
Period size: 241 Copynumber: 1.9 Consensus size: 233
2811336 AAAAAATTCT
2811346 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
1 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
** *
2811411 TATTTTAGGGAAAAGTTGAAAGTATCAATTTTTTTTAGAAATAAACTTCCAAAAAATATATATTT
66 TATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAACTTCCAAAAAATAGATATTT
* * * *
2811476 TTAGGGAAAAGTTGAAAGTATCAATTTTTCTTAGAAATAAATTTCCAAAAAATATTTTTGGGGAA
131 TGAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAATATTTTTAGGAAA
2811541 AAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTCA
196 AAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTCA
2811579 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAGAAAAATAAATTTCCA
1 AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT---AG--AAATAAATTTCC-
* * *
2811644 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTCAAAAAA-
60 -AAAAAATA-TTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAACTTCCAAAAAAT
*
2811708 AGGGT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTT-GAAAATCGAAATTTCCAAAAAAT
123 A-GATATTTTGAGGGAAAAGTTGAAAGTATCAATTTTCCTTAG-AAAT--AAATTTCCAAAAAAT
2811770 ATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
184 ATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCC
2811804 CTAAAAAAAA
Statistics
Matches: 202, Mismatches: 11, Indels: 16
0.88 0.05 0.07
Matches are distributed among these distances:
233 45 0.22
236 2 0.01
238 13 0.06
239 31 0.15
240 14 0.07
241 97 0.48
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (233 bp):
AAAAAATATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAA
TATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAACTTCCAAAAAATAGATATTT
TGAGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTCCAAAAAATATTTTTAGGAAA
AAGTTGAAAGTATCAATTTTCCTCAGAAATAAATTTCA
Found at i:2816130 original size:14 final size:14
Alignment explanation
Indices: 2816111--2816142 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
2816101 TTATATGCCC
2816111 AAATCAAAAGCTTA
1 AAATCAAAAGCTTA
2816125 AAATCAAAAGCTTA
1 AAATCAAAAGCTTA
2816139 AAAT
1 AAAT
2816143 GACGTGGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.59, C:0.12, G:0.06, T:0.22
Consensus pattern (14 bp):
AAATCAAAAGCTTA
Found at i:2821363 original size:26 final size:25
Alignment explanation
Indices: 2821307--2821363 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 25
2821297 GATAAAATTA
*
2821307 AAAAATGAAATATTTACATTTATAT
1 AAAAATGAAATATCTACATTTATAT
*
2821332 AAAAATGAAAATATCTATATTTATAT
1 AAAAATG-AAATATCTACATTTATAT
2821358 AAAAAT
1 AAAAAT
2821364 TAATAAAAAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 7 0.24
26 22 0.76
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.37
Consensus pattern (25 bp):
AAAAATGAAATATCTACATTTATAT
Found at i:2833135 original size:17 final size:17
Alignment explanation
Indices: 2833083--2833135 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
2833073 AATATATGTT
* **
2833083 TAATGTAAAAATAACGA
1 TAATGAAAAAATAATTA
* *
2833100 TAATGATAAATTAAATTA
1 TAATGAAAAAAT-AATTA
2833118 TAATGAAAAAATAATTA
1 TAATGAAAAAATAATTA
2833135 T
1 T
2833136 TAAAAATATT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.58, C:0.02, G:0.08, T:0.32
Consensus pattern (17 bp):
TAATGAAAAAATAATTA
Found at i:2833146 original size:12 final size:14
Alignment explanation
Indices: 2833124--2833155 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2833114 ATTATAATGA
2833124 AAAAATAATT-ATT
1 AAAAATAATTAATT
2833137 AAAAAT-ATTAATT
1 AAAAATAATTAATT
2833150 AAAAAT
1 AAAAAT
2833156 TATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAAATAATTAATT
Found at i:2833170 original size:21 final size:22
Alignment explanation
Indices: 2833130--2833179 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
2833120 ATGAAAAAAT
*
2833130 AATTATTAAAAATATTAATTAAA
1 AATTA-TAAAAATATAAATTAAA
**
2833153 AATTATAAAAATA-AAATTTTA
1 AATTATAAAAATATAAATTAAA
2833174 AATTAT
1 AATTAT
2833180 TTAATATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 11 0.46
22 8 0.33
23 5 0.21
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTATAAAAATATAAATTAAA
Found at i:2833246 original size:16 final size:16
Alignment explanation
Indices: 2833224--2833261 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2833214 TTTTAAAATA
2833224 AAATTTAGTTAT-TAAT
1 AAATTTA-TTATGTAAT
*
2833240 TAATTTATTATGTAAT
1 AAATTTATTATGTAAT
2833256 AAATTT
1 AAATTT
2833262 TATTTTATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
AAATTTATTATGTAAT
Found at i:2835055 original size:17 final size:17
Alignment explanation
Indices: 2835015--2835063 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
2835005 AGATATCATG
* *
2835015 AAAAAATATATTTTCTC
1 AAAAATTATATTTTTTC
* *
2835032 CATAATTATATTTTTTC
1 AAAAATTATATTTTTTC
2835049 AAAAATTAT-TTTTTT
1 AAAAATTATATTTTTT
2835064 TTAAATTTAA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 6 0.23
17 20 0.77
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (17 bp):
AAAAATTATATTTTTTC
Found at i:2835449 original size:43 final size:42
Alignment explanation
Indices: 2835380--2835537 Score: 138
Period size: 43 Copynumber: 3.9 Consensus size: 42
2835370 TTTTTCACAC
* *
2835380 ATTCAAATAATTGTACTATCTGTAATAATTACACACCATGCGT
1 ATTCAAATAATTGTACTGTCTATAATAATTACACACCATGC-T
* *
2835423 ATTCAAATAATTGTACCGTCTATAATAA-T---GA-CA----
1 ATTCAAATAATTGTACTGTCTATAATAATTACACACCATGCT
* *
2835456 ATTCAAATAATTGTACTGTCCA-AATAATAACACACCCCACTGCAT
1 ATTCAAATAATTGTACTGTCTATAATAATTACACA--CCA-TGC-T
*
2835501 ATTCAAATAATTGTACGGTCTATAATAATTACACACC
1 ATTCAAATAATTGTACTGTCTATAATAATTACACACC
2835538 CAAACTGCAT
Statistics
Matches: 90, Mismatches: 11, Indels: 27
0.70 0.09 0.21
Matches are distributed among these distances:
32 5 0.06
33 20 0.22
36 1 0.01
38 2 0.02
39 3 0.03
42 1 0.01
43 25 0.28
44 2 0.02
45 20 0.22
46 11 0.12
ACGTcount: A:0.40, C:0.20, G:0.08, T:0.32
Consensus pattern (42 bp):
ATTCAAATAATTGTACTGTCTATAATAATTACACACCATGCT
Found at i:2835510 original size:78 final size:76
Alignment explanation
Indices: 2835380--2835529 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 76
2835370 TTTTTCACAC
** * *
2835380 ATTCAAATAATTGTACTATCTGTAATAATTACACACCATGCGTATTCAAATAATTGTACCGTCTA
1 ATTCAAATAATTGTACTATCTCAAATAATAACACACCATGCATATTCAAATAATTGTACCGTCTA
2835445 TAATAATGACA
66 TAATAATGACA
* *
2835456 ATTCAAATAATTGTACTGTC-CAAATAATAACACACCCCACTGCATATTCAAATAATTGTACGGT
1 ATTCAAATAATTGTACTATCTCAAATAATAACACA--CCA-TGCATATTCAAATAATTGTACCGT
2835520 CTATAATAAT
63 CTATAATAAT
2835530 TACACACCCA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
75 11 0.17
76 19 0.29
77 3 0.05
78 32 0.49
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (76 bp):
ATTCAAATAATTGTACTATCTCAAATAATAACACACCATGCATATTCAAATAATTGTACCGTCTA
TAATAATGACA
Found at i:2836346 original size:15 final size:15
Alignment explanation
Indices: 2836305--2836346 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
2836295 TTATAAGTTT
*
2836305 AATAT-ATAAATTAC
1 AATATAATAAATTAA
2836319 AA-ATAATATAATTAA
1 AATATAATA-AATTAA
2836334 AATATAATAAATT
1 AATATAATAAATT
2836347 TTTAATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 2 0.08
14 5 0.21
15 11 0.46
16 6 0.25
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (15 bp):
AATATAATAAATTAA
Found at i:2836362 original size:6 final size:7
Alignment explanation
Indices: 2836343--2836367 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2836333 AAATATAATA
2836343 AATTTTT
1 AATTTTT
2836350 AATTTTT
1 AATTTTT
2836357 AATTTTT
1 AATTTTT
2836364 AATT
1 AATT
2836368 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (7 bp):
AATTTTT
Found at i:2838409 original size:13 final size:11
Alignment explanation
Indices: 2838367--2838422 Score: 51
Period size: 11 Copynumber: 4.8 Consensus size: 11
2838357 TATTTAAATT
*
2838367 TATTCAAAT-A
1 TATTAAAATAA
2838377 TATTTAAAATAA
1 TA-TTAAAATAA
2838389 TATTAAAATAA
1 TATTAAAATAA
2838400 TATATAAAAATAA
1 TAT-T-AAAATAA
*
2838413 AATTTAAAAT
1 TA-TTAAAAT
2838423 TTTTAAAAAC
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
10 2 0.05
11 18 0.46
12 9 0.23
13 9 0.23
14 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (11 bp):
TATTAAAATAA
Found at i:2838419 original size:25 final size:25
Alignment explanation
Indices: 2838373--2838422 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
2838363 AATTTATTCA
* *
2838373 AATATATTTAAAATAATATTAAAAT
1 AATATATTAAAAATAAAATTAAAAT
2838398 AATATA-TAAAAATAAAATTTAAAAT
1 AATATATTAAAAATAAAA-TTAAAAT
2838423 TTTTAAAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (25 bp):
AATATATTAAAAATAAAATTAAAAT
Found at i:2848598 original size:26 final size:26
Alignment explanation
Indices: 2848566--2848623 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
2848556 GATAAAATTA
*
2848566 AAAAATGAAAATATTTACATTTATAT
1 AAAAATGAAAATATCTACATTTATAT
*
2848592 AAAAATGAAAATATCTATATTTATAT
1 AAAAATGAAAATATCTACATTTATAT
2848618 AAAAAT
1 AAAAAT
2848624 TAATAAAGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.36
Consensus pattern (26 bp):
AAAAATGAAAATATCTACATTTATAT
Found at i:2848699 original size:28 final size:29
Alignment explanation
Indices: 2848668--2848727 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
2848658 TTCATATAAA
* * * *
2848668 TATATATA-AATATTTCCTTTTTATTAAT
1 TATACATACAATAATTCCTTTTCACTAAT
*
2848696 TATACATACATTAATTCCTTTTCACTAAT
1 TATACATACAATAATTCCTTTTCACTAAT
2848725 TAT
1 TAT
2848728 TTTTATTACA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 7 0.27
29 19 0.73
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (29 bp):
TATACATACAATAATTCCTTTTCACTAAT
Found at i:2850570 original size:16 final size:16
Alignment explanation
Indices: 2850550--2850587 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2850540 TTTAAAAATA
2850550 AAATTTAGTTAT-TAAT
1 AAATTTA-TTATGTAAT
*
2850566 TAATTTATTATGTAAT
1 AAATTTATTATGTAAT
2850582 AAATTT
1 AAATTT
2850588 TATTTTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
15 4 0.21
16 15 0.79
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (16 bp):
AAATTTATTATGTAAT
Found at i:2851226 original size:18 final size:17
Alignment explanation
Indices: 2851203--2851246 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
2851193 ATAATGTAAT
2851203 TAAAATATCAAAACATAA
1 TAAAATATCAAAACAT-A
* *
2851221 TAAAATTTTAAAACATA
1 TAAAATATCAAAACATA
2851238 TAACAATAT
1 TAA-AATAT
2851247 TTAAGAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (17 bp):
TAAAATATCAAAACATA
Found at i:2852646 original size:21 final size:22
Alignment explanation
Indices: 2852611--2852658 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
2852601 ATACATTTGT
* *
2852611 AAATTTATATAATTTTAAAATA
1 AAATTTATATAATTTGAAAAAA
*
2852633 AAATTTAT-TTATTTGAAAAAA
1 AAATTTATATAATTTGAAAAAA
2852654 AAATT
1 AAATT
2852659 AAAAATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.44
Consensus pattern (22 bp):
AAATTTATATAATTTGAAAAAA
Found at i:2853459 original size:45 final size:47
Alignment explanation
Indices: 2853407--2853509 Score: 119
Period size: 46 Copynumber: 2.3 Consensus size: 47
2853397 ATATACACAG
2853407 ATTATAAAAAAAATATAAT-AAAAA-AATGCATATCACATA-TTAAAA
1 ATTATAAAAAAAATATAATAAAAAATAATGCATATCACA-AGTTAAAA
*
2853452 ATTAT---AAAAATATAATAAAAAATTTAATGCATCTCACAAGTTAAAA
1 ATTATAAAAAAAATATAATAAAAAA--TAATGCATATCACAAGTTAAAA
*
2853498 TTTATAAAAAAA
1 ATTATAAAAAAA
2853510 TAAAATTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 12
0.77 0.03 0.19
Matches are distributed among these distances:
42 11 0.23
43 5 0.10
45 6 0.12
46 22 0.46
49 4 0.08
ACGTcount: A:0.61, C:0.07, G:0.03, T:0.29
Consensus pattern (47 bp):
ATTATAAAAAAAATATAATAAAAAATAATGCATATCACAAGTTAAAA
Found at i:2854830 original size:68 final size:68
Alignment explanation
Indices: 2854721--2854850 Score: 188
Period size: 68 Copynumber: 1.9 Consensus size: 68
2854711 CGAAAATGGC
** * * * *
2854721 ACTCAACGCAGTCTCCCTCTTTTCTCTTTATCCTCTCTCATTTCAACCCATTTGCTTTGTTAACT
1 ACTCAACGCAGTCTCCCTCCCTCCTCTATATCCTCTCTCATTTCAACCCATTTACTCTGTTAACT
2854786 TAA
66 TAA
* *
2854789 ACTCAACGCAGTCTGCCTCCCTCCTCTATATCCTCTCTCATTTCAACTCATTTACTCTGTTA
1 ACTCAACGCAGTCTCCCTCCCTCCTCTATATCCTCTCTCATTTCAACCCATTTACTCTGTTA
2854851 CCGCCGCCAC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 54 1.00
ACGTcount: A:0.19, C:0.35, G:0.06, T:0.40
Consensus pattern (68 bp):
ACTCAACGCAGTCTCCCTCCCTCCTCTATATCCTCTCTCATTTCAACCCATTTACTCTGTTAACT
TAA
Found at i:2862497 original size:32 final size:33
Alignment explanation
Indices: 2862461--2862522 Score: 108
Period size: 32 Copynumber: 1.9 Consensus size: 33
2862451 TATTTGAATA
2862461 TGCAGTTGGGTGTGTATTTATGAT-AGACAGTT
1 TGCAGTTGGGTGTGTATTTATGATAAGACAGTT
*
2862493 TGCAGTTGGGTGTGTATTTATTATAAGACA
1 TGCAGTTGGGTGTGTATTTATGATAAGACA
2862523 ATATAATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
32 23 0.82
33 5 0.18
ACGTcount: A:0.24, C:0.06, G:0.29, T:0.40
Consensus pattern (33 bp):
TGCAGTTGGGTGTGTATTTATGATAAGACAGTT
Found at i:2862585 original size:46 final size:46
Alignment explanation
Indices: 2862493--2862718 Score: 319
Period size: 46 Copynumber: 4.9 Consensus size: 46
2862483 ATAGACAGTT
* * *
2862493 TGCAGTTGGGTGTGTATTTATTATAAGACAATATAATTATTTGAATA
1 TGCAGTTGGGTGTGTAATTATTAT-AGACAGTACAATTATTTGAATA
* *
2862540 TGCAGTTGGGTGTGAAATTATTGTAGACAGTACAATTATTTGAATA
1 TGCAGTTGGGTGTGTAATTATTATAGACAGTACAATTATTTGAATA
*
2862586 TGCAGTTGGGTGTGTTATTATTATAGACAGTACAATTATTTGAATA
1 TGCAGTTGGGTGTGTAATTATTATAGACAGTACAATTATTTGAATA
* * * * *
2862632 -GACAGTTGGGTGTGTAATTGTCATAAACACTACAATTATTTGGATA
1 TG-CAGTTGGGTGTGTAATTATTATAGACAGTACAATTATTTGAATA
*
2862678 TGCAGATGGGTGTGTAATTATTATAGACAGTACAATTATTT
1 TGCAGTTGGGTGTGTAATTATTATAGACAGTACAATTATTT
2862719 TATTATATAA
Statistics
Matches: 158, Mismatches: 19, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
45 1 0.01
46 135 0.85
47 22 0.14
ACGTcount: A:0.32, C:0.07, G:0.22, T:0.39
Consensus pattern (46 bp):
TGCAGTTGGGTGTGTAATTATTATAGACAGTACAATTATTTGAATA
Found at i:2869853 original size:12 final size:12
Alignment explanation
Indices: 2869836--2869863 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
2869826 AAAAAAAACA
2869836 TTTTTTTTAGTG
1 TTTTTTTTAGTG
2869848 TTTTTTTTAGTG
1 TTTTTTTTAGTG
2869860 TTTT
1 TTTT
2869864 GAGATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (12 bp):
TTTTTTTTAGTG
Found at i:2870503 original size:17 final size:16
Alignment explanation
Indices: 2870460--2870515 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
2870450 CTTTTCTTAA
*
2870460 ATTTTT-TATTAGTTT
1 ATTTTTATATTAATTT
* *
2870475 AGTATTATTATTAAATTT
1 ATTTTTA-TATT-AATTT
*
2870493 ATTTTTATATTATTTT
1 ATTTTTATATTAATTT
2870509 ATTTTTA
1 ATTTTTA
2870516 AAGTTTATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
15 4 0.12
16 11 0.34
17 8 0.25
18 9 0.28
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.68
Consensus pattern (16 bp):
ATTTTTATATTAATTT
Found at i:2872199 original size:29 final size:30
Alignment explanation
Indices: 2872133--2872202 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 30
2872123 GGTAGGGGAT
* *
2872133 AGGTGATAGGGCATGGTGGTCAGAAGGGTGA
1 AGGTG-TAGGGCATGATAGTCAGAAGGGTGA
*
2872164 AAG-GTAGGGCATGATAGTCAGAAGGGT-A
1 AGGTGTAGGGCATGATAGTCAGAAGGGTGA
*
2872192 GGGTGTAGGGC
1 AGGTGTAGGGC
2872203 CTGGTGACAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
28 2 0.06
29 28 0.85
30 1 0.03
31 2 0.06
ACGTcount: A:0.27, C:0.07, G:0.47, T:0.19
Consensus pattern (30 bp):
AGGTGTAGGGCATGATAGTCAGAAGGGTGA
Found at i:2872292 original size:17 final size:16
Alignment explanation
Indices: 2872245--2872289 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
2872235 GGCATCTTCG
*
2872245 ATTTTTTTTATTTTCT
1 ATTTTTTTTATTTTAT
2872261 ATTTTTTTTATTTTAT
1 ATTTTTTTTATTTTAT
2872277 ATTTTTTTT-TTTT
1 ATTTTTTTTATTTT
2872290 TTAGATAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
15 4 0.14
16 24 0.86
ACGTcount: A:0.13, C:0.02, G:0.00, T:0.84
Consensus pattern (16 bp):
ATTTTTTTTATTTTAT
Found at i:2872665 original size:16 final size:16
Alignment explanation
Indices: 2872620--2872665 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 16
2872610 ATATTTATTT
2872620 ATTTAAATTATTTTATA
1 ATTT-AATTATTTTATA
*
2872637 ATTTAATTCTTTTATA
1 ATTTAATTATTTTATA
2872653 ATATT-ATTATTTT
1 AT-TTAATTATTTT
2872666 TTCTAAAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 20 0.77
17 6 0.23
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
ATTTAATTATTTTATA
Found at i:2872812 original size:20 final size:20
Alignment explanation
Indices: 2872787--2872826 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
2872777 ACAATAAGTT
*
2872787 TTTAATATAATTATTTAAAA
1 TTTAATATAATTAATTAAAA
* *
2872807 TTTAATTTTATTAATTAAAA
1 TTTAATATAATTAATTAAAA
2872827 GTTGAAATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TTTAATATAATTAATTAAAA
Found at i:2873035 original size:22 final size:23
Alignment explanation
Indices: 2872977--2873036 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
2872967 CACATATATT
*
2872977 TTTTAAAATT-T-TAAAATTAATT
1 TTTTAAAATTATATAAAATT-ATA
* *
2872999 TTTTCAAA-TAAATAAAATT-TA
1 TTTTAAAATTATATAAAATTATA
2873020 TTTTAAAATTATATAAA
1 TTTTAAAATTATATAAA
2873037 TTCACAAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
21 9 0.30
22 14 0.47
23 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTTAAAATTATATAAAATTATA
Found at i:2873520 original size:45 final size:47
Alignment explanation
Indices: 2873401--2873522 Score: 158
Period size: 47 Copynumber: 2.6 Consensus size: 47
2873391 CGATATGAGT
* * * *
2873401 AATTATTGTAGTCGGTACAATTATTTGAATATACAGTTTGGGTGTGA
1 AATTATTATAGACAGTACAATTATTTGAATATACAGTTGGGGTGTGA
* *
2873448 AATTATTATAGACAGTACAATTATTTGAATATGCAG-TGGGGTGTGT
1 AATTATTATAGACAGTACAATTATTTGAATATACAGTTGGGGTGTGA
* *
2873494 TATTATT-TGGACAGTACAATTATTTGAAT
1 AATTATTATAGACAGTACAATTATTTGAAT
2873523 TGTCATTATT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 21 0.31
46 14 0.21
47 32 0.48
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (47 bp):
AATTATTATAGACAGTACAATTATTTGAATATACAGTTGGGGTGTGA
Found at i:2873544 original size:78 final size:75
Alignment explanation
Indices: 2873449--2873597 Score: 192
Period size: 78 Copynumber: 1.9 Consensus size: 75
2873439 TGGGTGTGAA
* * *
2873449 ATTATTATAGACAGTACAATTATTTGAATATGCAGTGGGGTGT-GTTATTATTTGGACAGTACAA
1 ATTATTATAGACAGTACAATTAATTGAATACGCA-TGGGGTGTAGTTATTA--TAGA-AGTACAA
2873513 TTATTTGAATTGTC
62 TTATTTGAATTGTC
* * * *
2873527 ATTATTATAGACCGTACAATTAATTGAATACGCATGGTGTGTAGTTGTTATAGATGTACAATTAT
1 ATTATTATAGACAGTACAATTAATTGAATACGCATGGGGTGTAGTTATTATAGAAGTACAATTAT
2873592 TTGAAT
66 TTGAAT
2873598 GTGTGAAATA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
75 16 0.25
76 3 0.05
77 7 0.11
78 37 0.59
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.40
Consensus pattern (75 bp):
ATTATTATAGACAGTACAATTAATTGAATACGCATGGGGTGTAGTTATTATAGAAGTACAATTAT
TTGAATTGTC
Found at i:2875328 original size:22 final size:20
Alignment explanation
Indices: 2875294--2875333 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
2875284 ATCATTATTT
2875294 TTTAAATAAATAAAATTTATC
1 TTTAAATAAAT-AAATTTATC
*
2875315 TTTAAATTATATAAATTTA
1 TTTAAA-TAAATAAATTTA
2875334 CAAGTATACA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTAAATAAATAAATTTATC
Found at i:2875553 original size:36 final size:37
Alignment explanation
Indices: 2875486--2875555 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 37
2875476 TTATTTTTCC
*
2875486 TTAAATATTATTATATGTTTTAAAATTTTAATTAAAA
1 TTAAATATTATTATATGTTTTAAAATCTTAATTAAAA
* *
2875523 TTAAA-ATT-TTATTATGTTTTGATATCTTAATTA
1 TTAAATATTATTA-TATGTTTTAAAATCTTAATTA
2875556 TATTATTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
35 3 0.10
36 21 0.72
37 5 0.17
ACGTcount: A:0.40, C:0.01, G:0.04, T:0.54
Consensus pattern (37 bp):
TTAAATATTATTATATGTTTTAAAATCTTAATTAAAA
Found at i:2876384 original size:3 final size:3
Alignment explanation
Indices: 2876376--2876401 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
2876366 AAAAGACCAA
2876376 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
2876402 AAAAATGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:2877211 original size:12 final size:12
Alignment explanation
Indices: 2877194--2877219 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2877184 AGATATTTTC
2877194 ATTTTTATATAA
1 ATTTTTATATAA
2877206 ATTTTTATATAA
1 ATTTTTATATAA
2877218 AT
1 AT
2877220 GTAAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
ATTTTTATATAA
Found at i:2877211 original size:38 final size:36
Alignment explanation
Indices: 2877159--2877244 Score: 122
Period size: 38 Copynumber: 2.4 Consensus size: 36
2877149 TTTAATTTGC
*
2877159 TTTTTATTAATTTTTATATAAATATAGATATTTTCA
1 TTTTTATTAATTTTTATATAAATATAAATATTTTCA
*
2877195 TTTTTATATAAATTTTTATATAAATGTAAATATTTTCA
1 TTTTTAT-T-AATTTTTATATAAATATAAATATTTTCA
2877233 -TTTT-TTAATTTT
1 TTTTTATTAATTTT
2877245 ATCTGTAGAC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
34 6 0.13
35 1 0.02
36 8 0.17
37 5 0.11
38 26 0.57
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (36 bp):
TTTTTATTAATTTTTATATAAATATAAATATTTTCA
Found at i:2880416 original size:68 final size:71
Alignment explanation
Indices: 2880335--2880471 Score: 181
Period size: 72 Copynumber: 2.0 Consensus size: 71
2880325 GAGTGGCGGC
* * * * *
2880335 GGTAACAGAGCAAATGAGTTGAAAT-GAGCGAGGAT-ATAG-AGAAAAGAGGGAGAGTGCGTTGA
1 GGTAACAAAGCAAATGAGTCGAAATAGAGAGAGGATAAGAGAAGAAAAGAGGGAGACTGCGTTGA
2880397 GTTTAA
66 GTTTAA
* *
2880403 GGTAACAAAGCAAATGGGTCGAAATAGAGAGATGATGAAGAGAAGAAAAGAGGGAGACTGCGTTG
1 GGTAACAAAGCAAATGAGTCGAAATAGAGAGAGGAT-AAGAGAAGAAAAGAGGGAGACTGCGTTG
2880468 AGTT
65 AGTT
2880472 CAATTTTCGG
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
68 22 0.38
69 8 0.14
71 3 0.05
72 25 0.43
ACGTcount: A:0.41, C:0.07, G:0.35, T:0.18
Consensus pattern (71 bp):
GGTAACAAAGCAAATGAGTCGAAATAGAGAGAGGATAAGAGAAGAAAAGAGGGAGACTGCGTTGA
GTTTAA
Found at i:2881471 original size:18 final size:18
Alignment explanation
Indices: 2881448--2881483 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2881438 TAACAATTTA
*
2881448 AAAAATATTTAAATTAAT
1 AAAAATATATAAATTAAT
*
2881466 AAAAATATATAATTTAAT
1 AAAAATATATAAATTAAT
2881484 TCGATTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
AAAAATATATAAATTAAT
Found at i:2881563 original size:30 final size:29
Alignment explanation
Indices: 2881516--2881592 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
2881506 TCACTTTTTA
*
2881516 ATTTAAAATTTAATTTAAATATAATATAT
1 ATTTAAAATTAAATTTAAATATAATATAT
* *
2881545 ATTTAAAATTAAAATTTAATTATAATA-AA
1 ATTTAAAATT-AAATTTAAATATAATATAT
**
2881574 ATAAAAAATT-AATTTAAAT
1 ATTTAAAATTAAATTTAAAT
2881593 TAAATCAAAT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
27 8 0.20
29 19 0.46
30 14 0.34
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (29 bp):
ATTTAAAATTAAATTTAAATATAATATAT
Found at i:2881606 original size:22 final size:22
Alignment explanation
Indices: 2881548--2881610 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
2881538 AATATATATT
2881548 TAAAATTAAAAT-TTAATTATAA
1 TAAAA-TAAAATATTAATTATAA
*
2881570 TAAAATAAAAAATTAATT-TAAA
1 TAAAATAAAATATTAATTAT-AA
* *
2881592 TTAAATCAAATATT-ATTAT
1 TAAAATAAAATATTAATTAT
2881611 TTTGAATAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
21 9 0.26
22 25 0.74
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.40
Consensus pattern (22 bp):
TAAAATAAAATATTAATTATAA
Found at i:2883557 original size:12 final size:12
Alignment explanation
Indices: 2883542--2883571 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
2883532 TTATATAAAA
2883542 AATTATTTAATT
1 AATTATTTAATT
*
2883554 AATTAATTAATT
1 AATTATTTAATT
2883566 AATTAT
1 AATTAT
2883572 ATATATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
AATTATTTAATT
Found at i:2884038 original size:20 final size:20
Alignment explanation
Indices: 2884015--2884059 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
2884005 AAGAAGTTAC
*
2884015 AATTTTAAA-TAAAATTTTTA
1 AATTTAAAATTAAAA-TTTTA
2884035 AA-TTAAAATTAAAATTTTA
1 AATTTAAAATTAAAATTTTA
2884054 AATTTA
1 AATTTA
2884060 TTAAAAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AATTTAAAATTAAAATTTTA
Found at i:2884666 original size:15 final size:16
Alignment explanation
Indices: 2884646--2884683 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
2884636 AAAAAATCTC
2884646 ATATTTTT-TAATAAT
1 ATATTTTTATAATAAT
*
2884661 ATATTTTTATTATAAT
1 ATATTTTTATAATAAT
*
2884677 ATCTTTT
1 ATATTTT
2884684 ACTCCATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 8 0.40
16 12 0.60
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (16 bp):
ATATTTTTATAATAAT
Found at i:2894740 original size:14 final size:14
Alignment explanation
Indices: 2894705--2894740 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
2894695 TTATTATTTT
*
2894705 TAAAATTTTTTATA
1 TAAATTTTTTTATA
2894719 TAAATTTTTTTATA
1 TAAATTTTTTTATA
2894733 T-AATTTTT
1 TAAATTTTT
2894741 AATATATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (14 bp):
TAAATTTTTTTATA
Found at i:2894745 original size:12 final size:12
Alignment explanation
Indices: 2894708--2894746 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
2894698 TTATTTTTAA
2894708 AATTTTTTATAT
1 AATTTTTTATAT
2894720 AAATTTTTTTATAT
1 -AA-TTTTTTATAT
*
2894734 AATTTTTAATAT
1 AATTTTTTATAT
2894746 A
1 A
2894747 TTTAAATAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 10 0.42
13 4 0.17
14 10 0.42
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
AATTTTTTATAT
Found at i:2894939 original size:22 final size:23
Alignment explanation
Indices: 2894881--2894940 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
2894871 CACATATATT
*
2894881 TTTTAAAATT-T-TAAAATTAATT
1 TTTTAAAATTATATAAAATT-ATA
* *
2894903 TTTTCAAA-TAAATAAAATT-TA
1 TTTTAAAATTATATAAAATTATA
2894924 TTTTAAAATTATATAAA
1 TTTTAAAATTATATAAA
2894941 TTCACAAATG
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
21 9 0.30
22 14 0.47
23 7 0.23
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TTTTAAAATTATATAAAATTATA
Found at i:2896018 original size:45 final size:47
Alignment explanation
Indices: 2895924--2896020 Score: 135
Period size: 45 Copynumber: 2.1 Consensus size: 47
2895914 TTGTAGTCCG
* * *
2895924 TGAATATGCAGTTTGGGTGTGTAATTATTATAGACCGTACAATTATT
1 TGAATATGCAGATGGGGTGTGTAATTATTATAGACAGTACAATTATT
* *
2895971 TGAATATGCA-ATGGGGTGTGTTATTATT-TGGACAGTACAATTATT
1 TGAATATGCAGATGGGGTGTGTAATTATTATAGACAGTACAATTATT
2896016 TGAAT
1 TGAAT
2896021 TGTCATTATT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
45 20 0.44
46 15 0.33
47 10 0.22
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (47 bp):
TGAATATGCAGATGGGGTGTGTAATTATTATAGACAGTACAATTATT
Found at i:2896042 original size:78 final size:76
Alignment explanation
Indices: 2895947--2896096 Score: 212
Period size: 78 Copynumber: 1.9 Consensus size: 76
2895937 TGGGTGTGTA
* * **
2895947 ATTATTATAGACCGTACAATTATTTGAATATGCAATGGGGTGTGTTATTATT-TGGACAGTACAA
1 ATTATTATAGACCGTACAATTATTTGAATACGC-AT--GGTGTGTAATTATTACAGACAGTACAA
2896011 TTATTTGAATTGTC
63 TTATTTGAATTGTC
* *
2896025 ATTATTATAGACGGTACAATTATTTGAATACGCATGGTGTGTAATTATTACAGATAGTACAATTA
1 ATTATTATAGACCGTACAATTATTTGAATACGCATGGTGTGTAATTATTACAGACAGTACAATTA
2896090 TTTGAAT
66 TTTGAAT
2896097 GTGTGAAATA
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
75 13 0.20
76 19 0.29
77 2 0.03
78 31 0.48
ACGTcount: A:0.33, C:0.09, G:0.18, T:0.40
Consensus pattern (76 bp):
ATTATTATAGACCGTACAATTATTTGAATACGCATGGTGTGTAATTATTACAGACAGTACAATTA
TTTGAATTGTC
Found at i:2897410 original size:22 final size:20
Alignment explanation
Indices: 2897376--2897415 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
2897366 ATTATTATTT
2897376 TTTAAATAAATAAAATTTATC
1 TTTAAATAAAT-AAATTTATC
*
2897397 TTTAAATTATATAAATTTA
1 TTTAAA-TAAATAAATTTA
2897416 CAAGTATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
TTTAAATAAATAAATTTATC
Found at i:2898348 original size:21 final size:23
Alignment explanation
Indices: 2898314--2898364 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
2898304 ATAAATATTA
*
2898314 AATAATTTAAAATT-TTATTTTT
1 AATAATTTAAAATTAATATTTTT
**
2898336 -ATAATTTTTAATTAATATTTTT
1 AATAATTTAAAATTAATATTTTT
2898358 AATAATT
1 AATAATT
2898365 ATTTTTTCAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 11 0.46
22 7 0.29
23 6 0.25
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (23 bp):
AATAATTTAAAATTAATATTTTT
Found at i:2898363 original size:12 final size:14
Alignment explanation
Indices: 2898339--2898370 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
2898329 TATTTTTATA
2898339 ATTTTTAATTAA-T
1 ATTTTTAATTAATT
2898352 ATTTTTAA-TAATT
1 ATTTTTAATTAATT
2898365 ATTTTT
1 ATTTTT
2898371 TCATTATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 3 0.17
13 15 0.83
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
ATTTTTAATTAATT
Found at i:2898381 original size:17 final size:17
Alignment explanation
Indices: 2898359--2898411 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
2898349 AATATTTTTA
2898359 ATAATTATTTTTTCATT
1 ATAATTATTTTTTCATT
* *
2898376 ATAATTTAATTTATCATT
1 ATAA-TTATTTTTTCATT
** *
2898394 ATCGTTATTTTTACATT
1 ATAATTATTTTTTCATT
2898411 A
1 A
2898412 AACATATATT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.32, C:0.08, G:0.02, T:0.58
Consensus pattern (17 bp):
ATAATTATTTTTTCATT
Found at i:2910062 original size:26 final size:26
Alignment explanation
Indices: 2910033--2910090 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
2910023 CTTTTTATTA
*
2910033 ATTTTTATATAAATATAGATATTTTC
1 ATTTTTATATAAATATAAATATTTTC
*
2910059 ATTTTTATATAAATGTAAATATTTTC
1 ATTTTTATATAAATATAAATATTTTC
2910085 ATTTTT
1 ATTTTT
2910091 TAATTTTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.57
Consensus pattern (26 bp):
ATTTTTATATAAATATAAATATTTTC
Found at i:2919651 original size:59 final size:56
Alignment explanation
Indices: 2919552--2920008 Score: 492
Period size: 56 Copynumber: 7.7 Consensus size: 56
2919542 TTTTTTTTAG
*
2919552 GGAAAATTGAATACTTTCAACTTTTTCCTAAAAATA-TTTTTGGAAATTTCGAATTTC-AA
1 GGAAAATTG-ATACTTTCAAC-TTTTCCTCAAAATATTTTTTGGAAATTT---ATTTCTAA
* *
2919611 GGAAAATTGGATACTTTCAACTTTTCCTCAAAACCCTTTTTTTTGAAAATTTATTTCTAA
1 GGAAAATT-GATACTTTCAACTTTTCCTCAAAA---TATTTTTTGGAAATTTATTTCTAA
2919671 GGAAAAATTGATACTTTCAACTTTTCC-CAAAATATTTTTTTTGGAAATTTATTTTTCTTTTAA
1 GG-AAAATTGATACTTTCAACTTTTCCTCAAAATA--TTTTTTGGAAATTTA--TTTC---TAA
* * *
2919734 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGAAATTTATTTCTGA
1 GGAAAATTGATACTTTCAACTTTT-CCT-CAAA-ATATTTTTTGGAAATTTATTTCTAA
*
2919793 GGAAAATTGATACTTTCAACTTTTCCCCAAAA-ATATTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAATAT-TTTTTGGAAATTTATTTCTAA
* * *
2919849 GAAAAATTGATACTTTCAACTTTTCCCTAAAAATATATATTTTTTGGAAGTTTATTTCTAAA
1 GGAAAATTGATACTTTCAACTTTT-CCT--CAA-A-ATATTTTTTGGAAATTTATTTCT-AA
**
2919911 AAAAAATTGATACTTTCAACTTTTCC-CTAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAATATTTTTTGGAAATTTATTTCTAA
*
2919967 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATATTTTT
1 GGAAAATTGATACTTTCAACTTTT-CCTCAAAATAT-TTTTT
2920009 TAGAATTTTT
Statistics
Matches: 346, Mismatches: 22, Indels: 61
0.81 0.05 0.14
Matches are distributed among these distances:
55 2 0.01
56 68 0.20
57 36 0.10
58 33 0.10
59 59 0.17
60 28 0.08
61 28 0.08
62 65 0.19
63 7 0.02
64 14 0.04
65 3 0.01
66 3 0.01
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (56 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAATATTTTTTGGAAATTTATTTCTAA
Found at i:2919951 original size:118 final size:117
Alignment explanation
Indices: 2919554--2920009 Score: 611
Period size: 118 Copynumber: 3.8 Consensus size: 117
2919544 TTTTTTAGGG
*
2919554 AAAATTGAATACTTTCAACTTTTTCCTAAAAATATTTTTGGAAATTTCGAATTTC-AAGGAAAAT
1 AAAATTG-ATACTTTCAACTTTTCCCTAAAAATATTTTTGGAAATTT---ATTTCTAAGGAAAAT
*** * *
2919618 TGGATACTTTCAACTTTT-CCTCAAAACCCT-TTTTTTTGAAAATTTATTTCTAAGGA
62 T-GATACTTTCAACTTTTCCCT-AAAAATATATTTTTTTGGAAATTTATTTCTAAAGA
*
2919674 AAAATTGATACTTTCAACTTTTCCC-AAAATATTTTTTTTGGAAATTTATTTTTCTTTTAAGGAA
1 AAAATTGATACTTTCAACTTTTCCCTAAAA-A-TATTTTTGGAAATTTA--TTTC---TAAGGAA
* *
2919738 AATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTT-GAAATTTATTTCT-GAGG
59 AATTGATACTTTCAACTTTTCCCTAAAAATATATTTTTTTGGAAATTTATTTCTAAAGA
* *
2919795 AAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTGGAAATTTATTTCTAAGAAAAATTGAT
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTGGAAATTTATTTCTAAGGAAAATTGAT
* *
2919860 ACTTTCAACTTTTCCCTAAAAATATATATTTTTTGGAAGTTTATTTCTAAAAA
66 ACTTTCAACTTTTCCCTAAAAATATAT-TTTTTTGGAAATTTATTTCTAAAGA
2919913 AAAATTGATACTTTCAACTTTTCCCT-AAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTGGAAATTTATTTCTAAGGAAAATTGA
2919977 TACTTTCAACTTTTCCCTAAAAATATATTTTTT
65 TACTTTCAACTTTTCCCTAAAAATATATTTTTT
2920010 AGAATTTTTT
Statistics
Matches: 304, Mismatches: 17, Indels: 33
0.86 0.05 0.09
Matches are distributed among these distances:
115 40 0.13
116 6 0.02
117 24 0.08
118 92 0.30
119 22 0.07
120 36 0.12
121 27 0.09
122 37 0.12
123 20 0.07
ACGTcount: A:0.35, C:0.13, G:0.08, T:0.44
Consensus pattern (117 bp):
AAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTGGAAATTTATTTCTAAGGAAAATTGAT
ACTTTCAACTTTTCCCTAAAAATATATTTTTTTGGAAATTTATTTCTAAAGA
Found at i:2920106 original size:13 final size:13
Alignment explanation
Indices: 2920088--2920115 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2920078 CTAATCTAAT
2920088 AAATAAACAAATA
1 AAATAAACAAATA
2920101 AAATAAACAAATA
1 AAATAAACAAATA
2920114 AA
1 AA
2920116 CAAAGAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (13 bp):
AAATAAACAAATA
Found at i:2921122 original size:16 final size:14
Alignment explanation
Indices: 2921082--2921117 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
2921072 AAAGATAAAA
*
2921082 AAAATATATAATAT
1 AAAATACATAATAT
*
2921096 ATAATACATAATAT
1 AAAATACATAATAT
2921110 AAAATACA
1 AAAATACA
2921118 CATAAATATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.31
Consensus pattern (14 bp):
AAAATACATAATAT
Found at i:2921167 original size:19 final size:17
Alignment explanation
Indices: 2921143--2921185 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
2921133 AAAAAATATT
*
2921143 ATAATACATATATTAATAC
1 ATAATACATA-A-TAATAA
2921162 ATAATA-ATAATAATAA
1 ATAATACATAATAATAA
2921178 ATAATACA
1 ATAATACA
2921186 ATACATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 11 0.50
17 2 0.09
18 3 0.14
19 6 0.27
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (17 bp):
ATAATACATAATAATAA
Found at i:2925188 original size:30 final size:30
Alignment explanation
Indices: 2925154--2925230 Score: 73
Period size: 30 Copynumber: 2.6 Consensus size: 30
2925144 TTGAATATTT
* * * *
2925154 TATTTTGAATCAATTAAATTTTTAAATATA
1 TATTTTCAATCAATTAAATCTTTAAACACA
* * * *
2925184 TATTTTTATTCAATTGAATCTTTATACACA
1 TATTTTCAATCAATTAAATCTTTAAACACA
*
2925214 TATTTTCACTCAATTAA
1 TATTTTCAATCAATTAA
2925231 TGTTTTGATT
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.03, T:0.49
Consensus pattern (30 bp):
TATTTTCAATCAATTAAATCTTTAAACACA
Found at i:2925710 original size:29 final size:27
Alignment explanation
Indices: 2925677--2925744 Score: 75
Period size: 29 Copynumber: 2.4 Consensus size: 27
2925667 TTTTTAATAC
**
2925677 AAATATTGATAAAATTTTTATTATTAAAT
1 AAATATT-ATAAAATTTAAATTA-TAAAT
*
2925706 AAATATTAATTAAATTTAAATTATAAAT
1 AAATATT-ATAAAATTTAAATTATAAAT
2925734 -AATATTATAAA
1 AAATATTATAAA
2925745 TAATTTTTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.12
27 6 0.18
28 5 0.15
29 19 0.56
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATATTATAAAATTTAAATTATAAAT
Found at i:2925829 original size:14 final size:12
Alignment explanation
Indices: 2925801--2925845 Score: 54
Period size: 12 Copynumber: 3.5 Consensus size: 12
2925791 TCAATTTAAT
2925801 TTTTTATTAAAA
1 TTTTTATTAAAA
2925813 TTTTTATTAAATTA
1 TTTTTATTAAA--A
*
2925827 TTTTTAATAAAAA
1 TTTTT-ATTAAAA
2925840 TTTTTA
1 TTTTTA
2925846 CAAACTCCAC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
12 12 0.41
13 6 0.21
14 6 0.21
15 5 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTATTAAAA
Found at i:2926226 original size:16 final size:15
Alignment explanation
Indices: 2926202--2926231 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
2926192 TTCTATTCCT
2926202 TTTCTTTTCATTTTC
1 TTTCTTTTCATTTTC
2926217 TTTCTGTTTCATTTT
1 TTTCT-TTTCATTTT
2926232 TAATGAATTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.07, C:0.17, G:0.03, T:0.73
Consensus pattern (15 bp):
TTTCTTTTCATTTTC
Found at i:2934201 original size:2 final size:2
Alignment explanation
Indices: 2934196--2934220 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2934186 AGATATATGC
2934196 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
2934221 ATGGTAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2939870 original size:24 final size:24
Alignment explanation
Indices: 2939843--2939890 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
2939833 TTTATTAAAA
*
2939843 TTTTAAATCATATTATTTTTATAT
1 TTTTAAATCATATCATTTTTATAT
* * *
2939867 TTTTTATTTATATCATTTTTATAT
1 TTTTAAATCATATCATTTTTATAT
2939891 GTTGTGTCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.67
Consensus pattern (24 bp):
TTTTAAATCATATCATTTTTATAT
Found at i:2943322 original size:29 final size:29
Alignment explanation
Indices: 2943280--2943341 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
2943270 CTGAAAGTTT
*
2943280 TCTTTGAAAATAGTGACATATAGTATTAA
1 TCTTTGAAAATAGTGACATATAGTAATAA
2943309 TCTTTGAAAATAGTGACATATAGTAATAA
1 TCTTTGAAAATAGTGACATATAGTAATAA
2943338 -CTTT
1 TCTTT
2943342 TTAAGTCAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (29 bp):
TCTTTGAAAATAGTGACATATAGTAATAA
Found at i:2947281 original size:24 final size:24
Alignment explanation
Indices: 2947252--2947308 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
2947242 TTCAATTTGA
* *
2947252 TATTTATATATA-ATTTTTATTATT
1 TATTTATATATATATATTTA-AATT
2947276 TATTTA-ATTATATATATTTAAATT
1 TATTTATA-TATATATATTTAAATT
2947300 TATTTATAT
1 TATTTATAT
2947309 TTTATTTATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
23 1 0.04
24 20 0.71
25 7 0.25
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (24 bp):
TATTTATATATATATATTTAAATT
Found at i:2949595 original size:2 final size:2
Alignment explanation
Indices: 2949583--2949615 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
2949573 TTCCCAGAAC
*
2949583 CT CT TT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
2949616 ACACACACAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
CT
Found at i:2949620 original size:2 final size:2
Alignment explanation
Indices: 2949615--2949642 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
2949605 CTCTCTCTCT
2949615 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
2949643 TTCCTGTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:2953928 original size:15 final size:15
Alignment explanation
Indices: 2953908--2953937 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
2953898 ATAATTATAA
*
2953908 GTTTAAGTATTTTCG
1 GTTTAAGTAATTTCG
2953923 GTTTAAGTAATTTCG
1 GTTTAAGTAATTTCG
2953938 AATCTAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.07, G:0.20, T:0.50
Consensus pattern (15 bp):
GTTTAAGTAATTTCG
Found at i:2954532 original size:27 final size:25
Alignment explanation
Indices: 2954458--2954528 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
2954448 TATGTAAAAA
* *
2954458 TAATTTTA-AAATATAAAAAAATAT
1 TAATTTTACACATTTAAAAAAATAT
*
2954482 TAATTTTACATATTTAAAAAAATA-
1 TAATTTTACACATTTAAAAAAATAT
*
2954506 TAATTTTGAGACATTTAAAAAAA
1 TAATTTT-ACACATTTAAAAAAA
2954529 AATAGACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 15 0.37
25 26 0.63
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (25 bp):
TAATTTTACACATTTAAAAAAATAT
Found at i:2955564 original size:17 final size:18
Alignment explanation
Indices: 2955542--2955584 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
2955532 TAATGAACTC
2955542 TGTTTTTAAGTTTT-TGT
1 TGTTTTTAAGTTTTATGT
*
2955559 TGTTTTTAATTTTTATGT
1 TGTTTTTAAGTTTTATGT
*
2955577 TGATTTTA
1 TGTTTTTA
2955585 CCATATTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (18 bp):
TGTTTTTAAGTTTTATGT
Found at i:2958104 original size:64 final size:64
Alignment explanation
Indices: 2958031--2958163 Score: 205
Period size: 64 Copynumber: 2.1 Consensus size: 64
2958021 TTTTCTATAA
* * *
2958031 ATGGAATTGATGA-TCATAAAAATTAAGTCTCCGATTTAAAGAATTAGAGATTTATGCATTCAAC
1 ATGGAATTGATGAGT-ATAAAAAGTAAGTCTCCGATTTAAAGAATTAGACATTTATGCACTCAAC
* *
2958095 ATGGTATTGATGAGTATAAAAAGTAAGTCTCCGATTTAAAGAATTAGACATTTATTCACTCAAC
1 ATGGAATTGATGAGTATAAAAAGTAAGTCTCCGATTTAAAGAATTAGACATTTATGCACTCAAC
2958159 ATGGA
1 ATGGA
2958164 TACTCAGAAT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
64 61 0.98
65 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (64 bp):
ATGGAATTGATGAGTATAAAAAGTAAGTCTCCGATTTAAAGAATTAGACATTTATGCACTCAAC
Found at i:2962992 original size:2 final size:2
Alignment explanation
Indices: 2962985--2963018 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
2962975 ACAGACTCAA
2962985 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
2963019 ATATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:2963023 original size:2 final size:2
Alignment explanation
Indices: 2963018--2963043 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
2963008 TCTCTCTCTC
2963018 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
2963044 ACAAAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:2967046 original size:15 final size:17
Alignment explanation
Indices: 2967018--2967050 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
2967008 ATGAATAATT
2967018 ATTTAACTATAAATTCA
1 ATTTAACTATAAATTCA
2967035 ATTTAA-TA-AAATTCA
1 ATTTAACTATAAATTCA
2967050 A
1 A
2967051 ACTCTAGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 2 0.12
17 6 0.38
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (17 bp):
ATTTAACTATAAATTCA
Found at i:2968265 original size:14 final size:14
Alignment explanation
Indices: 2968229--2968258 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2968219 ATATAGATAA
*
2968229 TAATTTTGAGGTTC
1 TAATTTTGAGATTC
2968243 TAATTTTGAGATTC
1 TAATTTTGAGATTC
2968257 TA
1 TA
2968259 TTATTGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.17, T:0.50
Consensus pattern (14 bp):
TAATTTTGAGATTC
Found at i:2971728 original size:17 final size:17
Alignment explanation
Indices: 2971702--2971735 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
2971692 ATATGATTTA
2971702 TTGATAAAATATTAAAT
1 TTGATAAAATATTAAAT
* *
2971719 TTGATCAAATGTTAAAT
1 TTGATAAAATATTAAAT
2971736 ATTTAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (17 bp):
TTGATAAAATATTAAAT
Found at i:2971850 original size:29 final size:29
Alignment explanation
Indices: 2971775--2971850 Score: 73
Period size: 29 Copynumber: 2.5 Consensus size: 29
2971765 ATTACTAATT
*
2971775 TATTATAAATTATAATAAAATATTTAATATTA
1 TATT-TAAATTAT-A-AAAATATTTAATATAA
* * *
2971807 TACTTAAAATT-TAAAAATATTTATTGTAA
1 TA-TTTAAATTATAAAAATATTTAATATAA
2971836 TATTTAAATTATAAA
1 TATTTAAATTATAAA
2971851 TTTATTAATT
Statistics
Matches: 37, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
28 7 0.19
29 19 0.51
30 1 0.03
31 1 0.03
32 7 0.19
33 2 0.05
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (29 bp):
TATTTAAATTATAAAAATATTTAATATAA
Found at i:2973653 original size:2 final size:2
Alignment explanation
Indices: 2973629--2973672 Score: 63
Period size: 2 Copynumber: 22.5 Consensus size: 2
2973619 AAGTGGCTAA
* *
2973629 AT AT AA AT AT AA AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2973670 AT A
1 AT A
2973673 GAATTTCTGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
1 1 0.03
2 36 0.97
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (2 bp):
AT
Found at i:2980844 original size:22 final size:22
Alignment explanation
Indices: 2980800--2980845 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
2980790 TATAATTTTT
*
2980800 ATTTTTATTAAATTTATATATA
1 ATTTTTATTAAATTTATAAATA
2980822 ATTTTTATTAAAATTT-TAAATA
1 ATTTTTATT-AAATTTATAAATA
2980844 AT
1 AT
2980846 ATTTCATTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTTATTAAATTTATAAATA
Found at i:2993397 original size:16 final size:16
Alignment explanation
Indices: 2993376--2993406 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
2993366 AGGATGTTTA
2993376 TTTGTATTATATTATC
1 TTTGTATTATATTATC
*
2993392 TTTGTATTATTTTAT
1 TTTGTATTATATTAT
2993407 GATTAAGATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.68
Consensus pattern (16 bp):
TTTGTATTATATTATC
Found at i:2995813 original size:19 final size:17
Alignment explanation
Indices: 2995789--2995828 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 17
2995779 TTTATTTATT
*
2995789 TTATATTTATAAATATATA
1 TTATATTAATAAA-AT-TA
2995808 TTATATTAATAAAATTA
1 TTATATTAATAAAATTA
2995825 TTAT
1 TTAT
2995829 TTGATATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 2 0.10
19 12 0.60
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTATATTAATAAAATTA
Found at i:2995836 original size:41 final size:47
Alignment explanation
Indices: 2995784--2995885 Score: 117
Period size: 50 Copynumber: 2.2 Consensus size: 47
2995774 TATTGTTTAT
* *
2995784 TTATTTTATATTTA-TAAA-TATA-TAT-TA-TAT-TAATAAAATTA
1 TTATTTGATATTTAGTAAAGTATAGCATGTATTATCTAATAAAATTA
2995825 TTATTTGATATTTTAGTAAAGTTATAGCATGTATTATGCTAATAAAATTA
1 TTATTTGATA-TTTAGTAAAG-TATAGCATGTATTAT-CTAATAAAATTA
2995875 TTATTTGATAT
1 TTATTTGATAT
2995886 ATCTTGATTT
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
41 9 0.18
42 4 0.08
43 4 0.08
45 4 0.08
46 2 0.04
47 2 0.04
48 3 0.06
49 1 0.02
50 21 0.42
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (47 bp):
TTATTTGATATTTAGTAAAGTATAGCATGTATTATCTAATAAAATTA
Found at i:2995935 original size:16 final size:16
Alignment explanation
Indices: 2995893--2995935 Score: 68
Period size: 16 Copynumber: 2.6 Consensus size: 16
2995883 TATATCTTGA
2995893 TTTCTTTTTTTAAATTT
1 TTTC-TTTTTTAAATTT
*
2995910 TTTCTCTTTTAAATTT
1 TTTCTTTTTTAAATTT
2995926 TTTCTTTTTT
1 TTTCTTTTTT
2995936 TCCCTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 20 0.83
17 4 0.17
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (16 bp):
TTTCTTTTTTAAATTT
Found at i:2997109 original size:8 final size:8
Alignment explanation
Indices: 2997091--2997169 Score: 50
Period size: 8 Copynumber: 9.1 Consensus size: 8
2997081 TTTGTTTTTG
2997091 TTTTTATAT
1 TTTTTA-AT
2997100 TTTTTAAT
1 TTTTTAAT
2997108 TTTTTAAGTTT
1 TTTTTAA---T
2997119 TTTTTAAT
1 TTTTTAAT
***
2997127 TAAATAATT
1 TTTTTAA-T
*
2997136 TTTTTCTAT
1 TTTTT-AAT
*
2997145 TTTTTTAT
1 TTTTTAAT
*
2997153 TTTTTAAA
1 TTTTTAAT
2997161 TTTTTAAT
1 TTTTTAAT
2997169 T
1 T
2997170 ATGACTAATG
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
8 31 0.56
9 15 0.27
10 1 0.02
11 8 0.15
ACGTcount: A:0.25, C:0.01, G:0.01, T:0.72
Consensus pattern (8 bp):
TTTTTAAT
Found at i:2997583 original size:15 final size:14
Alignment explanation
Indices: 2997563--2997593 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
2997553 TATGTTTGAT
2997563 TTTTTAATTTTTATA
1 TTTTTAATTTTT-TA
2997578 TTTTTAATTTTTTA
1 TTTTTAATTTTTTA
2997592 TT
1 TT
2997594 AGATAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTAATTTTTTA
Found at i:3008460 original size:15 final size:14
Alignment explanation
Indices: 3008440--3008480 Score: 57
Period size: 13 Copynumber: 2.9 Consensus size: 14
3008430 TATCAATTTT
3008440 TTTTAAATAAAAATA
1 TTTTAAA-AAAAATA
*
3008455 TTTT-AAAAAAAGA
1 TTTTAAAAAAAATA
3008468 TTTTAAAAAAAAT
1 TTTTAAAAAAAAT
3008481 TAAAAATATC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 10 0.43
14 9 0.39
15 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (14 bp):
TTTTAAAAAAAATA
Done.