Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 122 of 127
Found at i:23796679 original size:11 final size:10
Alignment explanation
Indices: 23796648--23796691 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
23796638 TTAAATCGAA
23796648 TTATATATTT
1 TTATATATTT
23796658 TTA-ATAGTTT
1 TTATATA-TTT
23796668 TTATATATTT
1 TTATATATTT
*
23796678 TT-TAAATTT
1 TTATATATTT
23796687 TTATA
1 TTATA
23796692 AAATAAAAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
9 11 0.37
10 16 0.53
11 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (10 bp):
TTATATATTT
Found at i:23796744 original size:21 final size:23
Alignment explanation
Indices: 23796713--23796764 Score: 63
Period size: 21 Copynumber: 2.3 Consensus size: 23
23796703 ATTATTTTAA
* *
23796713 ATAAAAATCTATTTAAAT-ATAT
1 ATAAAAATCTACTAAAATAATAT
*
23796735 -TAAAATTCTACTAAAATAATAT
1 ATAAAAATCTACTAAAATAATAT
23796757 ATAAAAAT
1 ATAAAAAT
23796765 AAAATTTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 14 0.58
22 4 0.17
23 6 0.25
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (23 bp):
ATAAAAATCTACTAAAATAATAT
Found at i:23812178 original size:33 final size:34
Alignment explanation
Indices: 23812114--23812178 Score: 78
Period size: 33 Copynumber: 1.9 Consensus size: 34
23812104 CAAAAGTAAA
* * ** *
23812114 TAATATATTTTTAATTAAATTTATGATTAAAATT
1 TAATATATTTTAAATTAAATATAAAAATAAAATT
23812148 TAATA-ATTTTAAATTAAATATAAAAATAAAA
1 TAATATATTTTAAATTAAATATAAAAATAAAA
23812179 AAATATTTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
33 21 0.81
34 5 0.19
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.45
Consensus pattern (34 bp):
TAATATATTTTAAATTAAATATAAAAATAAAATT
Found at i:23815475 original size:17 final size:17
Alignment explanation
Indices: 23815451--23815497 Score: 64
Period size: 15 Copynumber: 2.9 Consensus size: 17
23815441 TAATTATTAA
23815451 AATATTAAAAATAATTT
1 AATATTAAAAATAATTT
*
23815468 ATTATTAAAAAT-A-TT
1 AATATTAAAAATAATTT
23815483 AATATTAAAAA-AATT
1 AATATTAAAAATAATT
23815498 ATGTTTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 13 0.50
16 2 0.08
17 11 0.42
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATTAAAAATAATTT
Found at i:23815490 original size:15 final size:15
Alignment explanation
Indices: 23815451--23815538 Score: 63
Period size: 15 Copynumber: 5.5 Consensus size: 15
23815441 TAATTATTAA
23815451 AATATTAAAAATAATTT
1 AATATTAAAAAT-A-TT
*
23815468 ATTATTAAAAATATT
1 AATATTAAAAATATT
*
23815483 AATATTAAAAAAATT
1 AATATTAAAAATATT
* *
23815498 ATGTTTTAATAGCAATATTT
1 A-ATATTAA-A--AATA-TT
23815518 AATATT-AAAATATT
1 AATATTAAAAATATT
23815532 -ATATTAA
1 AATATTAA
23815539 TACAAAAAAT
Statistics
Matches: 57, Mismatches: 8, Indels: 15
0.71 0.10 0.19
Matches are distributed among these distances:
13 5 0.09
14 3 0.05
15 20 0.35
16 6 0.11
17 13 0.23
18 1 0.02
19 6 0.11
20 3 0.05
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.43
Consensus pattern (15 bp):
AATATTAAAAATATT
Found at i:23815495 original size:34 final size:35
Alignment explanation
Indices: 23815457--23815527 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 35
23815447 TTAAAATATT
*
23815457 AAAAATAAT-TTATTATTAAAAATA-TTAATATTAA
1 AAAAATAATGTT-TTAATAAAAATATTTAATATTAA
* **
23815491 AAAAATTATGTTTTAATAGCAATATTTAATATTAA
1 AAAAATAATGTTTTAATAAAAATATTTAATATTAA
23815526 AA
1 AA
23815528 TATTATATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (35 bp):
AAAAATAATGTTTTAATAAAAATATTTAATATTAA
Found at i:23815539 original size:32 final size:32
Alignment explanation
Indices: 23815451--23815545 Score: 86
Period size: 32 Copynumber: 2.9 Consensus size: 32
23815441 TAATTATTAA
*
23815451 AATATTAAAAATAATT-TATTATTAAAAATATT
1 AATATTAAAAAT-ATTATATTAATAAAAATATT
* * **
23815483 AATATTAAAAAAATTATGTTTTAATAGCAATATTT
1 AATATTAAAAATATTA--TATTAATAAAAATA-TT
23815518 AATATT-AAAATATTATATTAATACAAAA
1 AATATTAAAAATATTATATTAATA-AAAA
23815546 AATACTTAAA
Statistics
Matches: 49, Mismatches: 9, Indels: 9
0.73 0.13 0.13
Matches are distributed among these distances:
31 3 0.06
32 18 0.37
33 2 0.04
34 18 0.37
35 8 0.16
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (32 bp):
AATATTAAAAATATTATATTAATAAAAATATT
Found at i:23815596 original size:31 final size:31
Alignment explanation
Indices: 23815556--23815628 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 31
23815546 AATACTTAAA
* *
23815556 ATAAAATTATTTAATTTTTATGTTATTTATTA-
1 ATAATATTATTTAA-TATTAT-TTATTTATTAT
23815588 AT-ATATTA--TAATATTATTTATTTATTAT
1 ATAATATTATTTAATATTATTTATTTATTAT
23815616 ATAATATTATTTA
1 ATAATATTATTTA
23815629 TAAATAAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
27 10 0.29
28 7 0.20
29 9 0.26
31 7 0.20
32 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (31 bp):
ATAATATTATTTAATATTATTTATTTATTAT
Found at i:23815620 original size:21 final size:23
Alignment explanation
Indices: 23815578--23815634 Score: 82
Period size: 21 Copynumber: 2.6 Consensus size: 23
23815568 AATTTTTATG
23815578 TTATTTATTAATATATTATAATA
1 TTATTTATTAATATATTATAATA
*
23815601 TTATTTATTTAT-TA-TATAATA
1 TTATTTATTAATATATTATAATA
*
23815622 TTATTTATAAATA
1 TTATTTATTAATA
23815635 AGATTATACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.57
22 2 0.07
23 11 0.37
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTATTTATTAATATATTATAATA
Found at i:23821038 original size:17 final size:17
Alignment explanation
Indices: 23821018--23821059 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
23821008 AATTAGATTT
*
23821018 TTATAAAATAATTTAAG
1 TTATAAAATAATTTAAA
* *
23821035 TTATAAAGTTATTTAAA
1 TTATAAAATAATTTAAA
23821052 TTA-AAAAT
1 TTATAAAAT
23821060 TTTAATTGAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.19
17 17 0.81
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (17 bp):
TTATAAAATAATTTAAA
Found at i:23821558 original size:22 final size:22
Alignment explanation
Indices: 23821526--23821578 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
23821516 TATTTTTTAT
23821526 ATTTTATTAATTT-CCAAATTAA
1 ATTTT-TTAATTTACCAAATTAA
* *
23821548 ACTTTTTTAATTTATCAATTTAA
1 A-TTTTTTAATTTACCAAATTAA
23821571 ATTTTTTA
1 ATTTTTTA
23821579 TTAAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 15 0.56
23 12 0.44
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTTTAATTTACCAAATTAA
Found at i:23837977 original size:21 final size:21
Alignment explanation
Indices: 23837925--23837978 Score: 56
Period size: 20 Copynumber: 2.5 Consensus size: 21
23837915 TCAATTCGAC
*
23837925 TTAAAATTAATAAAATATTATTT
1 TTAAAA-T-ATAAAAAATTATTT
* *
23837948 TT-TATTATAAAAAATTATTT
1 TTAAAATATAAAAAATTATTT
23837968 TTAAAATATAA
1 TTAAAATATAA
23837979 TTATTAAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
20 15 0.60
21 7 0.28
22 1 0.04
23 2 0.08
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TTAAAATATAAAAAATTATTT
Found at i:23838111 original size:17 final size:17
Alignment explanation
Indices: 23838077--23838113 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
23838067 AAAAATACTC
**
23838077 AATTTGATTTAACTAAA
1 AATTTGATTTAAAAAAA
23838094 AATTTGATTTAAAAAAA
1 AATTTGATTTAAAAAAA
23838111 AAT
1 AAT
23838114 CAATCCTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (17 bp):
AATTTGATTTAAAAAAA
Found at i:23838342 original size:18 final size:18
Alignment explanation
Indices: 23838319--23838355 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
23838309 ATAACACTAT
*
23838319 ACATATCAAATCAATTTA
1 ACATATCAAATCAACTTA
*
23838337 ACATATCAGATCAACTTA
1 ACATATCAAATCAACTTA
23838355 A
1 A
23838356 AAGTAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.19, G:0.03, T:0.30
Consensus pattern (18 bp):
ACATATCAAATCAACTTA
Found at i:23842267 original size:14 final size:14
Alignment explanation
Indices: 23842244--23842291 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
23842234 TCCGATCCGA
*
23842244 AATTTATAAAATAT
1 AATTTTTAAAATAT
*
23842258 TATTTTTAAAATAT
1 AATTTTTAAAATAT
23842272 AATTATTTAAAAATAT
1 AATT-TTT-AAAATAT
23842288 AATT
1 AATT
23842292 ATATAAATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 15 0.52
15 3 0.10
16 11 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AATTTTTAAAATAT
Found at i:23842284 original size:16 final size:16
Alignment explanation
Indices: 23842245--23842298 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
23842235 CCGATCCGAA
*
23842245 ATTTATAAAATATTATT
1 ATTTA-AAAATATAATT
23842262 -TTT-AAAATATAATT
1 ATTTAAAAATATAATT
23842276 ATTTAAAAATATAATT
1 ATTTAAAAATATAATT
*
23842292 ATATAAA
1 ATTTAAA
23842299 TAAAAATTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
14 10 0.30
15 3 0.09
16 20 0.61
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTTAAAAATATAATT
Found at i:23842321 original size:19 final size:19
Alignment explanation
Indices: 23842270--23842328 Score: 59
Period size: 19 Copynumber: 3.1 Consensus size: 19
23842260 TTTTTAAAAT
*
23842270 ATAATTATTTAAAAATATA
1 ATAATTAATTAAAAATATA
* *
23842289 ATTATATAAATAAAAAT-TAA
1 ATAAT-TAATTAAAAATAT-A
23842309 ATAATTAATTAAAAA-ATA
1 ATAATTAATTAAAAATATA
23842327 AT
1 AT
23842329 TTTTTATATA
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
18 3 0.09
19 15 0.47
20 14 0.44
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATTAATTAAAAATATA
Found at i:23842321 original size:23 final size:23
Alignment explanation
Indices: 23842286--23842329 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
23842276 ATTTAAAAAT
23842286 ATAATTATATAAATAAA-AATTAA
1 ATAATTATATAAA-AAATAATTAA
23842309 ATAATTA-ATTAAAAAATAATT
1 ATAATTATA-TAAAAAATAATT
23842330 TTTTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (23 bp):
ATAATTATATAAAAAATAATTAA
Found at i:23844158 original size:16 final size:15
Alignment explanation
Indices: 23844137--23844166 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23844127 TATAAATTTT
23844137 TTAATCAAATATTAAA
1 TTAATCAAAT-TTAAA
23844153 TTAATCAAATTTAA
1 TTAATCAAATTTAA
23844167 TTCAACTCGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATCAAATTTAAA
Found at i:23845276 original size:19 final size:21
Alignment explanation
Indices: 23845252--23845296 Score: 76
Period size: 19 Copynumber: 2.2 Consensus size: 21
23845242 CTCGAAATTA
23845252 ATAAAAAATT-TTTTT-AAAT
1 ATAAAAAATTATTTTTCAAAT
23845271 ATAAAAAATTATTTTTCAAAT
1 ATAAAAAATTATTTTTCAAAT
23845292 ATAAA
1 ATAAA
23845297 TATTTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 10 0.42
20 5 0.21
21 9 0.38
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (21 bp):
ATAAAAAATTATTTTTCAAAT
Found at i:23845278 original size:21 final size:23
Alignment explanation
Indices: 23845246--23845296 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 23
23845236 ATCCAACTCG
23845246 AAAT-TAATAAAAAATT-TTTTT-
1 AAATATAA-AAAAAATTATTTTTC
23845267 AAATAT--AAAAAATTATTTTTC
1 AAATATAAAAAAAATTATTTTTC
23845288 AAATATAAA
1 AAATATAAA
23845297 TATTTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 8 0.32
20 5 0.20
21 10 0.40
22 1 0.04
23 1 0.04
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
AAATATAAAAAAAATTATTTTTC
Found at i:23845309 original size:16 final size:16
Alignment explanation
Indices: 23845288--23845330 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
23845278 ATTATTTTTC
*
23845288 AAATATAAATATTTAA
1 AAATATAAATATATAA
* *
23845304 AAATATCATTATATAA
1 AAATATAAATATATAA
*
23845320 ATATATAAATA
1 AAATATAAATA
23845331 AAAATTAAAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATATAAATATATAA
Found at i:23845341 original size:19 final size:19
Alignment explanation
Indices: 23845316--23845359 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
23845306 ATATCATTAT
23845316 ATAAAT-ATATAAATAAAAA
1 ATAAATAAT-TAAATAAAAA
* *
23845335 TTAAATAATTAATTAAAAA
1 ATAAATAATTAAATAAAAA
23845354 ATAAAT
1 ATAAAT
23845360 TTTTATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
ATAAATAATTAAATAAAAA
Found at i:23866734 original size:6 final size:6
Alignment explanation
Indices: 23866717--23866752 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
23866707 AATAAAATAT
*
23866717 TTCGAG TCCGAG TTCGAG TTCGAG TTCGAG TTCGAG
1 TTCGAG TTCGAG TTCGAG TTCGAG TTCGAG TTCGAG
23866753 CATGAATAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.17, C:0.19, G:0.33, T:0.31
Consensus pattern (6 bp):
TTCGAG
Found at i:23869763 original size:44 final size:44
Alignment explanation
Indices: 23869700--23869798 Score: 162
Period size: 44 Copynumber: 2.2 Consensus size: 44
23869690 GAAATCAACC
* * *
23869700 GAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGGTTTG
1 GAGACCCCGTTAGTAGCGGCGAGCGAGAGAGGATCGAGGGTTTG
*
23869744 GAGACCCCGTTCGTAGCGGCGAGCGAGAGAGGATCGAGGGTTTG
1 GAGACCCCGTTAGTAGCGGCGAGCGAGAGAGGATCGAGGGTTTG
23869788 GAGACCCCGTT
1 GAGACCCCGTT
23869799 GAGTGGACTG
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.19, C:0.21, G:0.42, T:0.17
Consensus pattern (44 bp):
GAGACCCCGTTAGTAGCGGCGAGCGAGAGAGGATCGAGGGTTTG
Found at i:23870089 original size:20 final size:20
Alignment explanation
Indices: 23870064--23870103 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
23870054 GATAGCACAG
*
23870064 CGTTCTAATTAATCTTCGAA
1 CGTTCTAATGAATCTTCGAA
23870084 CGTTCTAATGAATCTTCGAA
1 CGTTCTAATGAATCTTCGAA
23870104 TGGGTCCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (20 bp):
CGTTCTAATGAATCTTCGAA
Found at i:23873900 original size:21 final size:21
Alignment explanation
Indices: 23873871--23873923 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
23873861 CTTATTTTAT
23873871 AATTAATTTATATTCATTTAA-
1 AATT-ATTTATATTCATTTAAG
*
23873892 AATCTATTTATATTCTTTTAAG
1 AAT-TATTTATATTCATTTAAG
23873914 AATTATTTAT
1 AATTATTTAT
23873924 TTAAACTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.55
Consensus pattern (21 bp):
AATTATTTATATTCATTTAAG
Found at i:23873979 original size:12 final size:12
Alignment explanation
Indices: 23873933--23874008 Score: 50
Period size: 12 Copynumber: 6.2 Consensus size: 12
23873923 TTTAAACTTA
23873933 TTATATTATAT-T
1 TTAT-TTATATAT
23873945 TTATTTAT-TAT
1 TTATTTATATAT
** *
23873956 TTATAAACATAT
1 TTATTTATATAT
23873968 TTATTTATATAT
1 TTATTTATATAT
**
23873980 ATTCATAAATATAT
1 -TT-ATTTATATAT
23873994 TTATTT-TATCAT
1 TTATTTATAT-AT
23874006 TTA
1 TTA
23874009 AATAAATCAA
Statistics
Matches: 49, Mismatches: 10, Indels: 10
0.71 0.14 0.14
Matches are distributed among these distances:
10 1 0.02
11 13 0.27
12 23 0.47
13 4 0.08
14 8 0.16
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTTATATAT
Found at i:23873982 original size:26 final size:27
Alignment explanation
Indices: 23873935--23873999 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
23873925 TAAACTTATT
* *
23873935 ATATTATATTTTATTTATTATTTATAAAC
1 ATATT-TA-TTTATATATTATTCATAAAC
*
23873964 ATATTTATTTATATA-TATTCATAAAT
1 ATATTTATTTATATATTATTCATAAAC
23873990 ATATTTATTT
1 ATATTTATTT
23874000 TATCATTTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 19 0.58
27 7 0.21
28 2 0.06
29 5 0.15
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (27 bp):
ATATTTATTTATATATTATTCATAAAC
Found at i:23874013 original size:26 final size:26
Alignment explanation
Indices: 23873939--23874015 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 26
23873929 CTTATTATAT
23873939 TATATTTTATTTAT-TAT-TT-ATAAA
1 TATA-TTTATTTATATATATTAATAAA
* *
23873963 CATATTTATTTATATATATTCATAAA
1 TATATTTATTTATATATATTAATAAA
23873989 TATATTTATTT-TATCAT-TTAAATAAA
1 TATATTTATTTATAT-ATATT-AATAAA
23874015 T
1 T
23874016 CAAATTAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
23 9 0.20
24 6 0.13
25 7 0.16
26 23 0.51
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (26 bp):
TATATTTATTTATATATATTAATAAA
Found at i:23874566 original size:29 final size:28
Alignment explanation
Indices: 23874533--23874628 Score: 77
Period size: 29 Copynumber: 3.3 Consensus size: 28
23874523 TAAAAAATTA
23874533 AAATTTTTAAATTATTTTAATTTTTAAAT
1 AAATTTTTAAATT-TTTTAATTTTTAAAT
* * * *
23874562 AAATTTATATA-TTTTTACTGTATTCAAAT
1 AAATTTTTAAATTTTTTAAT-T-TTTAAAT
** * *
23874591 AAATTTTTATTTTTTATTTATATTTAAAT
1 AAATTTTTAAATTTT-TTAATTTTTAAAT
23874620 AAATTTTTA
1 AAATTTTTA
23874629 TTTTAATTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
27 6 0.11
28 2 0.04
29 39 0.74
30 3 0.06
31 3 0.06
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (28 bp):
AAATTTTTAAATTTTTTAATTTTTAAAT
Found at i:23874568 original size:17 final size:17
Alignment explanation
Indices: 23874534--23874568 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
23874524 AAAAAATTAA
* *
23874534 AATTTTTAAATTATTTT
1 AATTTTTAAATAAATTT
23874551 AATTTTTAAATAAATTT
1 AATTTTTAAATAAATTT
23874568 A
1 A
23874569 TATATTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
AATTTTTAAATAAATTT
Found at i:23874629 original size:29 final size:29
Alignment explanation
Indices: 23874555--23874647 Score: 109
Period size: 29 Copynumber: 3.2 Consensus size: 29
23874545 TATTTTAATT
* * *
23874555 TTTAAATAAATTTATATATTTTTA-CTGTA
1 TTTAAATAAATTTTTAT-TTTTTATTTATA
*
23874584 TTCAAATAAATTTTTATTTTTTATTTATA
1 TTTAAATAAATTTTTATTTTTTATTTATA
*
23874613 TTTAAATAAATTTTTA-TTTTAATTTATA
1 TTTAAATAAATTTTTATTTTTTATTTATA
*
23874641 TTAAAAT
1 TTTAAAT
23874648 TTAAAAATTT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
28 23 0.41
29 33 0.59
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.58
Consensus pattern (29 bp):
TTTAAATAAATTTTTATTTTTTATTTATA
Found at i:23891552 original size:13 final size:13
Alignment explanation
Indices: 23891534--23891558 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23891524 TAAAATTACA
23891534 TTAAAAATATTTT
1 TTAAAAATATTTT
23891547 TTAAAAATATTT
1 TTAAAAATATTT
23891559 GAATATATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTAAAAATATTTT
Found at i:23895779 original size:19 final size:19
Alignment explanation
Indices: 23895755--23895793 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
23895745 TATGATTGCA
*
23895755 TTTCCTATTT-CTTTTTCTT
1 TTTCCT-TTTCCTTTTACTT
23895774 TTTCCTTTTCCTTTTACTT
1 TTTCCTTTTCCTTTTACTT
23895793 T
1 T
23895794 AATTATTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.05, C:0.23, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTCCTTTTCCTTTTACTT
Found at i:23898633 original size:18 final size:20
Alignment explanation
Indices: 23898591--23898634 Score: 67
Period size: 18 Copynumber: 2.4 Consensus size: 20
23898581 CGTATTACTG
23898591 TATTATATAAAATATTATAT
1 TATTATATAAAATATTATAT
23898611 T-TTATATAAAA-ATTAT-T
1 TATTATATAAAATATTATAT
23898628 TATTATA
1 TATTATA
23898635 ATTTATGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 2 0.09
18 10 0.43
19 10 0.43
20 1 0.04
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
TATTATATAAAATATTATAT
Found at i:23898724 original size:24 final size:24
Alignment explanation
Indices: 23898697--23898752 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
23898687 ACTTATGATT
*
23898697 TTTTTA-AAATTTTAAATCATATTA
1 TTTTTATAAATTTT-AATCAAATTA
* *
23898721 TTTTTATATATTTTATTCAAATTA
1 TTTTTATAAATTTTAATCAAATTA
23898745 TTTTTATA
1 TTTTTATA
23898753 TCATATTATC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 22 0.79
25 6 0.21
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTTATAAATTTTAATCAAATTA
Found at i:23900309 original size:19 final size:19
Alignment explanation
Indices: 23900293--23900329 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23900283 ATTTTTTTAT
23900293 TTATCATTTATCATTTTTC
1 TTATCATTTATCATTTTTC
* *
23900312 TTATTATTTATTATTTTT
1 TTATCATTTATCATTTTT
23900330 TAGCAAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.08, G:0.00, T:0.70
Consensus pattern (19 bp):
TTATCATTTATCATTTTTC
Found at i:23900527 original size:9 final size:9
Alignment explanation
Indices: 23900509--23900539 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
23900499 ATTAATATAA
23900509 AATAACAAT
1 AATAACAAT
*
23900518 AATAATAAT
1 AATAACAAT
23900527 AATAACAAT
1 AATAACAAT
23900536 AATA
1 AATA
23900540 TCATGAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (9 bp):
AATAACAAT
Found at i:23900568 original size:14 final size:14
Alignment explanation
Indices: 23900548--23900616 Score: 59
Period size: 14 Copynumber: 4.7 Consensus size: 14
23900538 TATCATGAAA
23900548 AAAATAAAAAAATC
1 AAAATAAAAAAATC
*
23900562 AACATAAAAATCAATAC
1 AAAATAAAAA--AAT-C
23900579 AAAATAAATAAAATC
1 AAAATAAA-AAAATC
* * *
23900594 AAAATCAAAATA-G
1 AAAATAAAAAAATC
23900607 AAAATAAAAA
1 AAAATAAAAA
23900617 GAAAAAGAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
13 9 0.20
14 12 0.27
15 8 0.18
16 6 0.13
17 8 0.18
18 2 0.04
ACGTcount: A:0.74, C:0.09, G:0.01, T:0.16
Consensus pattern (14 bp):
AAAATAAAAAAATC
Found at i:23901691 original size:40 final size:40
Alignment explanation
Indices: 23901640--23902022 Score: 218
Period size: 40 Copynumber: 9.6 Consensus size: 40
23901630 TGACCAGAGA
*
23901640 CAATAAACTTTAAATGTTGAAAA-GCTCCTTTAACCAAAGG
1 CAATCAACTTTAAATGTT-AAAATGCTCCTTTAACCAAAGG
*
23901680 CAATCAACTTTAAATGATAAAATGCTCCTTTAACCAAAGG
1 CAATCAACTTTAAATGTTAAAATGCTCCTTTAACCAAAGG
** * *
23901720 CAA-CAAACTTTAAATGTTAAAAAACT-CTTCTCACCAGAGG
1 CAATC-AACTTTAAATGTTAAAATGCTCCTT-TAACCAAAGG
* * * *
23901760 TAATAAACTTTAGAT-TTAAAAGTGCTTCTTTAACCAAAGG
1 CAATCAACTTTAAATGTTAAAA-TGCTCCTTTAACCAAAGG
* * * ** *
23901800 CAA-CAAACTTTAAATGTTAAAATGGCTCATCTCATTAGAGG
1 CAATC-AACTTTAAATGTTAAAAT-GCTCCTTTAACCAAAGG
* * * * ** *
23901841 TAA-CAAACTTTAGAT-TCAAAAGTGTTATTTTAACTAAAGG
1 CAATC-AACTTTAAATGTTAAAA-TGCTCCTTTAACCAAAGG
* * * *
23901881 CAA-CAAACTTTAAATGATT-AAA-GCTCCTCTGATCAGAGG
1 CAATC-AACTTTAAATG-TTAAAATGCTCCTTTAACCAAAGG
* *
23901920 CAA-CGAACTTTAAAT-TCAAAAGAGCTCCTTTAACCAAAGG
1 CAATC-AACTTTAAATGTTAAAA-TGCTCCTTTAACCAAAGG
* * * * **
23901960 TAA-CAAAATTTAAATGTTAAAAAGGCTCTTTTAACCAAAAA
1 CAATC-AACTTTAAATGTT-AAAATGCTCCTTTAACCAAAGG
23902001 CAA-CAAACTTTAAATGTTAAAA
1 CAATC-AACTTTAAATGTTAAAA
23902023 AGGCTCCTCT
Statistics
Matches: 265, Mismatches: 61, Indels: 34
0.74 0.17 0.09
Matches are distributed among these distances:
37 1 0.00
38 3 0.01
39 37 0.14
40 152 0.57
41 67 0.25
42 5 0.02
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.28
Consensus pattern (40 bp):
CAATCAACTTTAAATGTTAAAATGCTCCTTTAACCAAAGG
Found at i:23901873 original size:81 final size:79
Alignment explanation
Indices: 23901707--23901987 Score: 332
Period size: 81 Copynumber: 3.5 Consensus size: 79
23901697 TAAAATGCTC
** * * *
23901707 CTTTAACCAAAGGCAACAAACTTTAAATGTTAAAAAACTCTTCTCACCAGAGGTAATAAACTTTA
1 CTTTAACCAAAGGCAACAAACTTTAAATGTTAAAAGGCTCATCTCATCAGAGGTAACAAACTTTA
*
23901772 GATTTAAAAGTGCTT
66 GATTCAAAAGTG-TT
*
23901787 CTTTAACCAAAGGCAACAAACTTTAAATGTTAAAATGGCTCATCTCATTAGAGGTAACAAACTTT
1 CTTTAACCAAAGGCAACAAACTTTAAATGTTAAAA-GGCTCATCTCATCAGAGGTAACAAACTTT
23901852 AGATTCAAAAGTGTT
65 AGATTCAAAAGTGTT
* * * * * *
23901867 ATTTTAACTAAAGGCAACAAACTTTAAATGATT-AAA-GCTCCTCTGATCAGAGGCAACGAACTT
1 -CTTTAACCAAAGGCAACAAACTTTAAATG-TTAAAAGGCTCATCTCATCAGAGGTAACAAACTT
* * *
23901930 TAAATTCAAAAGAGCTC
64 TAGATTCAAAAGTG-TT
* *
23901947 CTTTAACCAAAGGTAACAAAATTTAAATGTTAAAAAGGCTC
1 CTTTAACCAAAGGCAACAAACTTTAAATGTT-AAAAGGCTC
23901988 TTTTAACCAA
Statistics
Matches: 173, Mismatches: 21, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
78 2 0.01
79 59 0.34
80 41 0.24
81 69 0.40
82 2 0.01
ACGTcount: A:0.42, C:0.17, G:0.13, T:0.28
Consensus pattern (79 bp):
CTTTAACCAAAGGCAACAAACTTTAAATGTTAAAAGGCTCATCTCATCAGAGGTAACAAACTTTA
GATTCAAAAGTGTT
Found at i:23902008 original size:160 final size:160
Alignment explanation
Indices: 23901708--23902012 Score: 369
Period size: 160 Copynumber: 1.9 Consensus size: 160
23901698 AAAATGCTCC
* * * *
23901708 TTTAACCAAAGGCAACAAACTTTAAATGTTAAAAAACTCTTCTCACCAGAGGTAATAAACTTTAG
1 TTTAACCAAAGGCAACAAACTTTAAATGTT-AAAAACTCCTCTCACCAGAGGCAACAAACTTTAA
* * * * * * ** *
23901773 ATTTAAAAGTGCTTCTTTAACCAAAGGCAACAAACTTTAAATGTTAAAATGGCTCATCTCATTAG
65 ATTCAAAAGAGCTCCTTTAACCAAAGGCAACAAAATTTAAATGTTAAAAAGGCTCATCTAACCAA
***
23901838 AGGTAACAAACTTTAGATTCAAAAGTGTTAT
130 AAACAACAAACTTTAGATTCAAAAGTGTTAT
* * * * *
23901869 TTTAACTAAAGGCAACAAACTTTAAATGATT-AAAGCTCCTCTGATCAGAGGCAACGAACTTTAA
1 TTTAACCAAAGGCAACAAACTTTAAATG-TTAAAAACTCCTCTCACCAGAGGCAACAAACTTTAA
* * *
23901933 ATTCAAAAGAGCTCCTTTAACCAAAGGTAACAAAATTTAAATGTTAAAAAGGCTCTTTTAACCAA
65 ATTCAAAAGAGCTCCTTTAACCAAAGGCAACAAAATTTAAATGTTAAAAAGGCTCATCTAACCAA
23901998 AAACAACAAACTTTA
130 AAACAACAAACTTTA
23902013 AATGTTAAAA
Statistics
Matches: 119, Mismatches: 24, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
160 90 0.76
161 27 0.23
162 2 0.02
ACGTcount: A:0.43, C:0.17, G:0.12, T:0.29
Consensus pattern (160 bp):
TTTAACCAAAGGCAACAAACTTTAAATGTTAAAAACTCCTCTCACCAGAGGCAACAAACTTTAAA
TTCAAAAGAGCTCCTTTAACCAAAGGCAACAAAATTTAAATGTTAAAAAGGCTCATCTAACCAAA
AACAACAAACTTTAGATTCAAAAGTGTTAT
Found at i:23914081 original size:20 final size:20
Alignment explanation
Indices: 23914043--23914081 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
23914033 TTTAAAAAAC
* **
23914043 TTTTTATTATTAATTAATTA
1 TTTTTATTATAAAAAAATTA
23914063 TTTTTATTATAAAAAAATT
1 TTTTTATTATAAAAAAATT
23914082 TAGATTATCC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTATTATAAAAAAATTA
Found at i:23914970 original size:19 final size:20
Alignment explanation
Indices: 23914932--23914971 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
23914922 GTCGCTGTGT
23914932 ATCGGTGCTCAAAAACTTCA
1 ATCGGTGCTCAAAAACTTCA
23914952 ATCGGTG-TCGAAAAA-TTCA
1 ATCGGTGCTC-AAAAACTTCA
23914971 A
1 A
23914972 AAATTCTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (20 bp):
ATCGGTGCTCAAAAACTTCA
Found at i:23916606 original size:25 final size:27
Alignment explanation
Indices: 23916573--23916623 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 27
23916563 ATTTCAATCG
23916573 TAATTATAATAATTTTT-TT-TAATTA
1 TAATTATAATAATTTTTATTATAATTA
23916598 TAATTATAATAATTTTTATTATAATT
1 TAATTATAATAATTTTTATTATAATT
23916624 TTAAATTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 17 0.71
26 2 0.08
27 5 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (27 bp):
TAATTATAATAATTTTTATTATAATTA
Found at i:23917477 original size:32 final size:33
Alignment explanation
Indices: 23917421--23917482 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
23917411 AAAATCATTT
* **
23917421 ATAATTATTAATTATAATTTAAAAT-TATATAA
1 ATAATTATAAATTATAATAAAAAATGTATATAA
23917453 ATAATTATAAATTATAATAAAAAATGTATA
1 ATAATTATAAATTATAATAAAAAATGTATA
23917483 GATAAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 22 0.85
33 4 0.15
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (33 bp):
ATAATTATAAATTATAATAAAAAATGTATATAA
Found at i:23919912 original size:14 final size:15
Alignment explanation
Indices: 23919893--23919923 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
23919883 CAGTCTCATT
23919893 TTTTATCTTTT-TTC
1 TTTTATCTTTTCTTC
23919907 TTTTATCTTTTCTTC
1 TTTTATCTTTTCTTC
23919922 TT
1 TT
23919924 ATCCTATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.69
15 5 0.31
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTATCTTTTCTTC
Found at i:23929497 original size:21 final size:21
Alignment explanation
Indices: 23929467--23929506 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23929457 TATTTTTCTG
23929467 TTTTAATTTCATTCTATTTTT
1 TTTTAATTTCATTCTATTTTT
* * *
23929488 TTTTAGTTTCTTTTTATTT
1 TTTTAATTTCATTCTATTT
23929507 GATTTAACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.07, G:0.03, T:0.75
Consensus pattern (21 bp):
TTTTAATTTCATTCTATTTTT
Found at i:23945292 original size:2 final size:2
Alignment explanation
Indices: 23945280--23945322 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
23945270 ACGCAGCGCA
*
23945280 AG AG AG CG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
23945322 A
1 A
23945323 CAGTGTCTTG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.02, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:23946523 original size:13 final size:13
Alignment explanation
Indices: 23946492--23946542 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
23946482 AATATATTTA
23946492 AATATATTAAAAT
1 AATATATTAAAAT
**
23946505 TTTATATTAAAAT
1 AATATATTAAAAT
*
23946518 AATATATAAAAAT
1 AATATATTAAAAT
* *
23946531 AAAATTTTAAAA
1 AATATATTAAAA
23946543 ATTAAAAATT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:23946537 original size:31 final size:30
Alignment explanation
Indices: 23946458--23946539 Score: 92
Period size: 33 Copynumber: 2.6 Consensus size: 30
23946448 TTTTTATAAA
*
23946458 ATAAAAATAATAATTTCATATCAAAATATAT
1 ATAAAAATAA-AATTTTATATCAAAATATAT
* *
23946489 TTAAATATATTAAAATTTTATATTAAAATAATAT
1 ATAAA-A-A-TAAAATTTTATATCAAAAT-ATAT
23946523 ATAAAAATAAAATTTTA
1 ATAAAAATAAAATTTTA
23946540 AAAATTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
31 14 0.33
32 2 0.05
33 16 0.37
34 11 0.26
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (30 bp):
ATAAAAATAAAATTTTATATCAAAATATAT
Found at i:23947326 original size:19 final size:19
Alignment explanation
Indices: 23947302--23947340 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
23947292 TAAATTTTTA
23947302 ATAATTATAAGTAAAA-ATT
1 ATAATTATAA-TAAAATATT
23947321 ATAATTATAATAAAATATT
1 ATAATTATAATAAAATATT
23947340 A
1 A
23947341 GATAATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
ATAATTATAATAAAATATT
Found at i:23956312 original size:22 final size:22
Alignment explanation
Indices: 23956286--23956329 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23956276 TGTATATTTA
*
23956286 TATTTGTATCTCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23956308 TATTTGTATCCCTAGAATTAAG
1 TATTTGTATCCCTAGAATTAAG
23956330 GAAGATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (22 bp):
TATTTGTATCCCTAGAATTAAG
Found at i:23962678 original size:20 final size:22
Alignment explanation
Indices: 23962653--23962701 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
23962643 TTTTCAGTCT
*
23962653 AAAGAAAGGAA-TCA-GTTAGA
1 AAAGAAAGGAAGTCAGGTTAAA
23962673 AAAGAAA--AAGTCAGGTTAAA
1 AAAGAAAGGAAGTCAGGTTAAA
23962693 AAAGAAAGG
1 AAAGAAAGG
23962702 CCAAAATGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 2 0.08
19 3 0.12
20 19 0.79
ACGTcount: A:0.59, C:0.04, G:0.24, T:0.12
Consensus pattern (22 bp):
AAAGAAAGGAAGTCAGGTTAAA
Found at i:23968169 original size:2 final size:2
Alignment explanation
Indices: 23968157--23968210 Score: 74
Period size: 2 Copynumber: 27.0 Consensus size: 2
23968147 ATTAAGGTTT
* *
23968157 TA TA CTA TA TA TA -A CA TA TG TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
23968199 TA TA TA TA TA TA
1 TA TA TA TA TA TA
23968211 AAACAAGGAA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
1 1 0.02
2 44 0.94
3 2 0.04
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (2 bp):
TA
Found at i:23986061 original size:2 final size:2
Alignment explanation
Indices: 23986049--23986080 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
23986039 ATTGGAAAGG
23986049 AT AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23986081 GAAACTTAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:23987164 original size:12 final size:12
Alignment explanation
Indices: 23987147--23987171 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23987137 TATTGAAAGA
23987147 AAAAAATTTTAT
1 AAAAAATTTTAT
23987159 AAAAAATTTTAT
1 AAAAAATTTTAT
23987171 A
1 A
23987172 TTGAATGAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AAAAAATTTTAT
Found at i:23987602 original size:3 final size:3
Alignment explanation
Indices: 23987584--23987631 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
23987574 ATTTTAATTT
*
23987584 TTA TTA TT- TTA ATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
23987631 T
1 T
23987632 ATGCACACCA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23992860 original size:42 final size:42
Alignment explanation
Indices: 23992813--23992894 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
23992803 GTATAAGACT
23992813 TAAATTCAAGAAAAAGAAAAAAAAATCACCATCAACTGTACC
1 TAAATTCAAGAAAAAGAAAAAAAAATCACCATCAACTGTACC
*
23992855 TAAATTCAAGAAAAAGAAAAACAAATCACCATCAACTGTA
1 TAAATTCAAGAAAAAGAAAAAAAAATCACCATCAACTGTA
23992895 TATGGATGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.57, C:0.18, G:0.07, T:0.17
Consensus pattern (42 bp):
TAAATTCAAGAAAAAGAAAAAAAAATCACCATCAACTGTACC
Found at i:23997021 original size:19 final size:20
Alignment explanation
Indices: 23996997--23997039 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
23996987 CAGAGTTTCC
* *
23996997 TTTTCCTTTTC-TTTTTCTT
1 TTTTCCCTTTCGTTTTCCTT
23997016 TTTTCCCTTTCGTTTTCCTT
1 TTTTCCCTTTCGTTTTCCTT
23997036 TTTT
1 TTTT
23997040 ACGTTTGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.48
20 11 0.52
ACGTcount: A:0.00, C:0.23, G:0.02, T:0.74
Consensus pattern (20 bp):
TTTTCCCTTTCGTTTTCCTT
Found at i:24000917 original size:69 final size:69
Alignment explanation
Indices: 24000831--24000969 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
24000821 ATGCCAACAC
24000831 ACAGGCCACAGCTTGTGGTTTATTCAGCTTTGATTTCACAGCTCATTGAATAATCATCATCATTA
1 ACAGGCCACAGCTTGTGGTTTATTCAGCTTTGATTTCACAGCTCATTGAATAATCATCATCATTA
24000896 CTTT
66 CTTT
*
24000900 ACAGGCCACAGCTTGTGGTTTATTCAGCTTTGATTTCACAGCTCATTGAATCATCATCATCATTA
1 ACAGGCCACAGCTTGTGGTTTATTCAGCTTTGATTTCACAGCTCATTGAATAATCATCATCATTA
24000965 CTTT
66 CTTT
24000969 A
1 A
24000970 AAACTAAGAT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.37
Consensus pattern (69 bp):
ACAGGCCACAGCTTGTGGTTTATTCAGCTTTGATTTCACAGCTCATTGAATAATCATCATCATTA
CTTT
Found at i:24005140 original size:14 final size:14
Alignment explanation
Indices: 24005121--24005147 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24005111 GGTGAAACAT
24005121 AGAGAGAGAGAAAG
1 AGAGAGAGAGAAAG
24005135 AGAGAGAGAGAAA
1 AGAGAGAGAGAAA
24005148 CAATGAGTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.41, T:0.00
Consensus pattern (14 bp):
AGAGAGAGAGAAAG
Found at i:24032553 original size:2 final size:2
Alignment explanation
Indices: 24032546--24032573 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
24032536 TAACCCTTTC
24032546 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24032574 TTTGGTCAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24039132 original size:22 final size:22
Alignment explanation
Indices: 24039099--24039148 Score: 50
Period size: 21 Copynumber: 2.3 Consensus size: 22
24039089 TTTGATCGAA
*
24039099 TTTTTATATTT-ATACAGTTAAAT
1 TTTTAATATTTAATA-A-TTAAAT
*
24039122 TTTTAAT-TTTAATAATTAAAG
1 TTTTAATATTTAATAATTAAAT
24039143 TTTTAA
1 TTTTAA
24039149 ATTGATGACC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
21 11 0.46
22 4 0.17
23 9 0.38
ACGTcount: A:0.38, C:0.02, G:0.04, T:0.56
Consensus pattern (22 bp):
TTTTAATATTTAATAATTAAAT
Found at i:24058096 original size:15 final size:15
Alignment explanation
Indices: 24058072--24058106 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
24058062 TTTTTATATA
*
24058072 TATTATAATTGAAAT
1 TATTAAAATTGAAAT
24058087 TATTAAAATTGAAAT
1 TATTAAAATTGAAAT
24058102 T-TTAA
1 TATTAA
24058107 TTATTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.46
Consensus pattern (15 bp):
TATTAAAATTGAAAT
Found at i:24058102 original size:21 final size:21
Alignment explanation
Indices: 24058078--24058117 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24058068 TATATATTAT
24058078 AATTGAAATTATTAAAATTGA
1 AATTGAAATTATTAAAATTGA
**
24058099 AATTTTAATTATTAAAATT
1 AATTGAAATTATTAAAATT
24058118 AAAGTCAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (21 bp):
AATTGAAATTATTAAAATTGA
Found at i:24058629 original size:7 final size:7
Alignment explanation
Indices: 24058617--24058641 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24058607 CATATTTAAA
24058617 AAAAAAT
1 AAAAAAT
24058624 AAAAAAT
1 AAAAAAT
24058631 AAAAAAT
1 AAAAAAT
24058638 AAAA
1 AAAA
24058642 TTTACTTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:24071518 original size:24 final size:24
Alignment explanation
Indices: 24071491--24071539 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
24071481 CCTGATTTTT
24071491 ATGAAATTATTATACCTTTGTGAC
1 ATGAAATTATTATACCTTTGTGAC
24071515 ATGAAATTATTATACCTTTGTGAC
1 ATGAAATTATTATACCTTTGTGAC
24071539 A
1 A
24071540 ATCATTCAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (24 bp):
ATGAAATTATTATACCTTTGTGAC
Found at i:24072278 original size:1 final size:1
Alignment explanation
Indices: 24072272--24072303 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
24072262 CATTGTGAGG
*
24072272 TTTTTTTTTTTTTTTTTTTTTATTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
24072304 ATTGTAGCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.03, C:0.00, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Found at i:24072304 original size:11 final size:11
Alignment explanation
Indices: 24072272--24072306 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
24072262 CATTGTGAGG
*
24072272 TTTTTTTTTTT
1 TTTTTTTTTTA
24072283 TTTTTTTTTTA
1 TTTTTTTTTTA
24072294 TTTTTTTTTTA
1 TTTTTTTTTTA
24072305 TT
1 TT
24072307 GTAGCTTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.06, C:0.00, G:0.00, T:0.94
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:24076585 original size:17 final size:18
Alignment explanation
Indices: 24076563--24076596 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
24076553 GCACGTGTCC
24076563 TCACTT-TATAAATGCTT
1 TCACTTCTATAAATGCTT
*
24076580 TCACTTCTATATATGCT
1 TCACTTCTATAAATGCT
24076597 ATGACAACTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.21, G:0.06, T:0.47
Consensus pattern (18 bp):
TCACTTCTATAAATGCTT
Found at i:24093539 original size:142 final size:139
Alignment explanation
Indices: 24093268--24093540 Score: 348
Period size: 142 Copynumber: 1.9 Consensus size: 139
24093258 TACGGTTTTA
*
24093268 TCCTACAAAAAGTACCTCACAAGATGGAAGTAGTGTGAACCCTTATATACTCCAGTGATCTTATT
1 TCCTACAAAAAGTACCTCACAAGATGGAAGTAGTGTGAACCCTTATATACTCCAGTGATCCTATT
* * * *
24093333 ATGTTTAATGTGAGATTCAGGACTCTTTCTTAGATCTGTCACATTCTTCCGCACCCAACTTCGTG
66 ATGTTCAATGTGAGATTCAGGACTCTTCCTTAGATCCGTCACATTCTTCCGCACCCAACATCGTG
24093398 ATGTCCTTG
131 ATGTCCTTG
* ** * * * *
24093407 TCCTACAAAATGTGTCTCATAAGGTGGAGGTAGTGTGAACTCTTATATACTCCAGTGACCCTCCT
1 TCCTACAAAAAGTACCTCACAAGATGGAAGTAGTGTGAACCCTTATATACTCCAGTGA---TCCT
** * * * * *
24093472 ATTATGTTCAATGTGAGATTCATTACTCTTCCTTAGGTCCGTGACATTTTTCTGCACTCAACATC
63 ATTATGTTCAATGTGAGATTCAGGACTCTTCCTTAGATCCGTCACATTCTTCCGCACCCAACATC
24093537 GTGA
128 GTGA
24093541 CGCTCTCCTC
Statistics
Matches: 112, Mismatches: 19, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
139 51 0.46
142 61 0.54
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (139 bp):
TCCTACAAAAAGTACCTCACAAGATGGAAGTAGTGTGAACCCTTATATACTCCAGTGATCCTATT
ATGTTCAATGTGAGATTCAGGACTCTTCCTTAGATCCGTCACATTCTTCCGCACCCAACATCGTG
ATGTCCTTG
Found at i:24103613 original size:2 final size:2
Alignment explanation
Indices: 24103608--24103658 Score: 102
Period size: 2 Copynumber: 25.5 Consensus size: 2
24103598 AAAGAGCAAT
24103608 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
24103650 AG AG AG AG A
1 AG AG AG AG A
24103659 CTTCCTGTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 49 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:24103979 original size:2 final size:2
Alignment explanation
Indices: 24103972--24104006 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
24103962 AGTTCTACTG
* *
24103972 AT AT AT AT AT AT AT AT AT AT AT TT AT AT TT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24104007 ACCCTTTCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (2 bp):
AT
Found at i:24105148 original size:2 final size:2
Alignment explanation
Indices: 24105141--24105172 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
24105131 TCAGCGTGGA
*
24105141 AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24105173 GCTCATATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:24113357 original size:11 final size:11
Alignment explanation
Indices: 24113343--24113384 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
24113333 ATATTAATAC
24113343 TTAATTTAAAT
1 TTAATTTAAAT
24113354 TTAATTTAAAT
1 TTAATTTAAAT
**
24113365 AAAATTTAAAT
1 TTAATTTAAAT
24113376 TTAATTTAA
1 TTAATTTAA
24113385 TTATTATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
TTAATTTAAAT
Found at i:24117057 original size:2 final size:2
Alignment explanation
Indices: 24117052--24117082 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
24117042 TGTGTGTGTC
24117052 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24117083 TATGTGAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24125440 original size:27 final size:27
Alignment explanation
Indices: 24125355--24125440 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
24125345 GCCAATTTCC
* * *
24125355 CAACCAACCCCTTCAAAACTAGATTCG
1 CAACCAGCCCCTTCAAAACTAAATTCT
*
24125382 CAACCAGCCCCTTCAAAACTAAAATCT
1 CAACCAGCCCCTTCAAAACTAAATTCT
* *
24125409 CAACCAGCCCTTTCAAAACCAAATTCT
1 CAACCAGCCCCTTCAAAACTAAATTCT
*
24125436 TAACC
1 CAACC
24125441 TTCCCAACCT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.38, C:0.37, G:0.05, T:0.20
Consensus pattern (27 bp):
CAACCAGCCCCTTCAAAACTAAATTCT
Found at i:24135291 original size:2 final size:2
Alignment explanation
Indices: 24135284--24135323 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
24135274 ACATACCTTC
24135284 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24135324 TCACAAGTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:24142750 original size:14 final size:14
Alignment explanation
Indices: 24142731--24142773 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
24142721 TATTATATTT
24142731 AATAATTTAAAATA
1 AATAATTTAAAATA
*
24142745 AATAATTATAAATTA
1 AATAATT-TAAAATA
*
24142760 TAT-ATTTAAAATA
1 AATAATTTAAAATA
24142773 A
1 A
24142774 TTTTAATAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
13 6 0.25
14 10 0.42
15 8 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (14 bp):
AATAATTTAAAATA
Found at i:24149227 original size:14 final size:15
Alignment explanation
Indices: 24149208--24149236 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24149198 TTGATGACTA
24149208 TTTATGATT-TTTAC
1 TTTATGATTGTTTAC
24149222 TTTATGATTGTTTAC
1 TTTATGATTGTTTAC
24149237 AAAAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.21, C:0.07, G:0.10, T:0.62
Consensus pattern (15 bp):
TTTATGATTGTTTAC
Found at i:24149686 original size:27 final size:26
Alignment explanation
Indices: 24149656--24149706 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
24149646 ACCATTTTAG
24149656 TTTTTTATTATTATATTTTTTTCTTTC
1 TTTTTTATT-TTATATTTTTTTCTTTC
* *
24149683 TTTTTTATTTTTTTTTTTTTTCTT
1 TTTTTTATTTTATATTTTTTTCTT
24149707 CTTCTTCTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.10, C:0.06, G:0.00, T:0.84
Consensus pattern (26 bp):
TTTTTTATTTTATATTTTTTTCTTTC
Found at i:24150646 original size:19 final size:19
Alignment explanation
Indices: 24150622--24150659 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24150612 ATTTTTGTTT
*
24150622 GAATTTTTTTTTCCAAAAA
1 GAATTTTTTATTCCAAAAA
*
24150641 GAATTTTTTATTCTAAAAA
1 GAATTTTTTATTCCAAAAA
24150660 TTTTTTTTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.08, G:0.05, T:0.47
Consensus pattern (19 bp):
GAATTTTTTATTCCAAAAA
Found at i:24150974 original size:9 final size:9
Alignment explanation
Indices: 24150953--24150991 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
24150943 AAGAAGAAAG
24150953 AAAAA-AAT
1 AAAAATAAT
24150961 AAAAAATAAT
1 -AAAAATAAT
24150971 AAAAATAAT
1 AAAAATAAT
24150980 AAAAATAA-
1 AAAAATAAT
24150988 AAAA
1 AAAA
24150992 CTAAAATGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
8 4 0.14
9 22 0.76
10 3 0.10
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAAATAAT
Found at i:24151284 original size:48 final size:49
Alignment explanation
Indices: 24151148--24151791 Score: 511
Period size: 48 Copynumber: 13.1 Consensus size: 49
24151138 TTGAAAATTT
* * * * **
24151148 AAAACGCTCTTCTCAGCAGAGGCTCAACAGCTTTAAAAAATTA---AAA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGA
* * * * *
24151194 AAAAAACTTC-TCTAAGCAAAGACTCAACAATTTTAAAAATTTATCTTGA
1 AAAAAGC-TCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGA
* *
24151243 AAAAAGCTCATTTCAGCAAAGGCTCAACAACTTT-AAAATTTATCTT-A
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGA
* * * *
24151290 AAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCATTTTG-
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGA
* * * * * * ****
24151338 AAAAGGTTCCTCTCAGCAAAGGCTCAACAACTTTCGAAAATATATAAAAA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTT-AAAAATTTATCTTGA
* * * * *
24151388 AAAAAGCTCATCTAAGGAGAGGCTCAATAATTTTAAAAATTTTATTTTG-
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAA-TTTATCTTGA
* *
24151437 AAAAAGTTTC-TCTCAGCAGAGGCTCAACAACTTT-AATATCTTATCTTG-
1 AAAAAG-CTCATCTCAGCAGAGGCTCAACAACTTTAAAAAT-TTATCTTGA
* * *
24151485 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATTTTATTTTAA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGA
** *
24151534 AAAAATTTC-TCTCAGCAGAGGCTTAACAACTTTAAAAATTCTCATCTTGA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATT-T-ATCTTGA
* ** * * * *
24151584 AAATAGCTCATCTCAGTTGAGACTTAACGACTTTTAAAATTTTATCTTGAA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAAC-TTTAAAAATTTATCTTG-A
* * *
24151635 AAAAAGCTCATCTCAGCAGAAGCTCAACGACTTTTAAAATTTTATCTTGA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAAC-TTTAAAAATTTATCTTGA
* * * * * * *
24151685 AAAAGGTTCTTTTCAACAAAAGCTCAACAACTTTTAAAGAATTTTCATCTTGA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAAC-TTTAAA-AA-TTT-ATCTTGA
* * * *
24151738 AAAAAGCTTATATCAGTAGAGGCTTAACAACTTTAAAAATTCTCATCTTGA
1 AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATT-T-ATCTTGA
24151789 AAA
1 AAA
24151792 CTTTAAAAAT
Statistics
Matches: 478, Mismatches: 96, Indels: 43
0.77 0.16 0.07
Matches are distributed among these distances:
46 32 0.07
47 36 0.08
48 129 0.27
49 75 0.16
50 83 0.17
51 77 0.16
52 18 0.04
53 28 0.06
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (49 bp):
AAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAAATTTATCTTGA
Found at i:24151467 original size:147 final size:145
Alignment explanation
Indices: 24151242--24151668 Score: 369
Period size: 147 Copynumber: 2.9 Consensus size: 145
24151232 ATTTATCTTG
* *
24151242 AAAAAAGCTCATTTCAGCAAAGGCTCAACAACTTTAAAATTTATCTTAAAAAAGCTCCTCTCAAC
1 AAAAAAGCTCATCTAAGCAAAGGCTCAACAACTTTAAAATTTATCTTAAAAAAGCTCCTCTCAAC
* * * *
24151307 AGAGGCTCAACAACTTTAAAAAT-TCATTTTGAAAAGGTTCCTCTCAGCAAAGGCTCAACAACTT
66 AGAGGCTCAACAACTTT-AAAATCTCATCTTGAAAAAGCTCATCTCAGCAAAGGCTCAACAACTT
24151371 TCGAAAATATATAAAA
130 TCGAAAATATATAAAA
* * * * * * * *
24151387 AAAAAAGCTCATCTAAGGAGAGGCTCAATAATTTTAAAAATTTTATTTTGAAAAAGTTTCTCTCA
1 AAAAAAGCTCATCTAAGCAAAGGCTCAACAACTTT-AAAA-TTTATCTTAAAAAAGCTCCTCTCA
* * * *
24151452 GCAGAGGCTCAACAACTTTAATATCTTATCTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACT
64 ACAGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCATCTCAGCAAAGGCTCAACAACT
* ***
24151517 TT--AAAATTTTATTTTA
129 TTCGAAAA-TATATAAAA
** * * * * *
24151533 AAAAAATTTC-TCTCAGCAGAGGCTTAACAACTTTAAAAATTCTCATCTTGAAAATAGCTCATCT
1 AAAAAAGCTCATCTAAGCAAAGGCTCAACAACTTT-AAAATT-T-ATCTT-AAAAAAGCTCCTCT
*** * * * * *
24151597 CAGTTGAGACTTAACGACTTTTAAAATTTTATCTTGAAAAAAAGCTCATCTCAGCAGAA-GCTCA
62 CAACAGAGGCTCAACAAC-TTTAAAATCTCATCTTG--AAAAAGCTCATCTCAGCA-AAGGCTCA
*
24151661 ACGACTTT
123 ACAACTTT
24151669 TAAAATTTTA
Statistics
Matches: 227, Mismatches: 44, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
144 2 0.01
145 58 0.26
146 25 0.11
147 96 0.42
148 15 0.07
150 30 0.13
151 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (145 bp):
AAAAAAGCTCATCTAAGCAAAGGCTCAACAACTTTAAAATTTATCTTAAAAAAGCTCCTCTCAAC
AGAGGCTCAACAACTTTAAAATCTCATCTTGAAAAAGCTCATCTCAGCAAAGGCTCAACAACTTT
CGAAAATATATAAAA
Found at i:24151508 original size:195 final size:190
Alignment explanation
Indices: 24151158--24151776 Score: 539
Period size: 195 Copynumber: 3.2 Consensus size: 190
24151148 AAAACGCTCT
*
24151158 TCTCAGCAGAGGCTCAACAGCTTTAAAAAATTAAAAAAAAAACTTCTCTAAGCAAAGACTCAACA
1 TCTCAGCAGAGGCTCAACAACTTTAAAAAATTAAAAAAAAAACTTCTCTAAGCAAAGACTCAACA
*
24151223 ATTTTAAAAATTTATCTTGAAAAAAGCTCATTTCAGCAAAGGCTCAACAACTTTAAAATTTATCT
66 ATTTTAAAAATTTATCTTGAAAAAAGCTCATCTCAGCAAAGGCTCAACAACTTTAAAATTTATCT
* * **
24151288 TAAAAAAGCTCCTCTCAACAGAGGCTCAACAACTTTAAAAATTCATTTTGAAAAGGTTCC
131 TAAAAAAGCTCATCTCAACAGAGGCTCAACAACTTTAAAAATTCATTTTAAAAAAATTCC
* * * * *
24151348 TCTCAGCAAAGGCTCAACAACTTTCGAAAATATATAAAAAAAAAAGC-TCATCTAAGGAGAGGCT
1 TCTCAGCAGAGGCTCAACAACTTT--AAAAAAT-TAAAAAAAAAA-CTTC-TCTAAGCAAAGACT
* * * * *
24151412 CAATAATTTTAAAAATTTTATTTTG-AAAAAGTTTC-TCTCAGCAGAGGCTCAACAACTTTAATA
61 CAACAATTTTAAAAA-TTTATCTTGAAAAAAG-CTCATCTCAGCAAAGGCTCAACAACTTTAAAA
* * * *
24151475 TCTTATCTTGAAAAAGCTCATCTCAGCAGAGGCTCAACAACTTTAAAATTTTATTTTAAAAAAAT
124 T-TTATCTTAAAAAAGCTCATCTCAACAGAGGCTCAACAACTTTAAAAATTCATTTTAAAAAAAT
*
24151540 TTC
188 TCC
* * ** * * * ***
24151543 TCTCAGCAGAGGCTTAACAACTTTAAAAATTCTCATCTTGAAAATAGC-TCATCTCAGTTGAGAC
1 TCTCAGCAGAGGCTCAACAACTTTAAAAAAT-T-A---AAAAAAAAACTTC-TCTAAGCAAAGAC
* * * *
24151607 TTAACGACTTTTAAAATTTTATCTTGAAAAAAAGCTCATCTCAGCAGAA-GCTCAACGACTTTTA
60 TCAAC-AATTTTAAAAATTTATCTTG-AAAAAAGCTCATCTCAGCA-AAGGCTCAACAAC-TTTA
* * * * * *
24151671 AAATTTTATCTTGAAAAAGGTTCTTTTCAACAAAAGCTCAACAACTTTTAAAGAATTTTCATCTT
121 AAA-TTTATCTT-AAAAAAGCTCATCTCAACAGAGGCTCAACAAC-TTTAAA-AA--TTCAT-TT
* * *
24151736 GAAAAAAGCTT-A
179 TAAAAAA-ATTCC
* * *
24151748 TATCAGTAGAGGCTTAACAACTTTAAAAA
1 TCTCAGCAGAGGCTCAACAACTTTAAAAA
24151777 TTCTCATCTT
Statistics
Matches: 345, Mismatches: 58, Indels: 37
0.78 0.13 0.08
Matches are distributed among these distances:
190 22 0.06
192 6 0.02
193 19 0.06
194 59 0.17
195 89 0.26
196 24 0.07
197 16 0.05
198 23 0.07
199 14 0.04
200 25 0.07
201 6 0.02
202 1 0.00
204 4 0.01
205 35 0.10
206 2 0.01
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (190 bp):
TCTCAGCAGAGGCTCAACAACTTTAAAAAATTAAAAAAAAAACTTCTCTAAGCAAAGACTCAACA
ATTTTAAAAATTTATCTTGAAAAAAGCTCATCTCAGCAAAGGCTCAACAACTTTAAAATTTATCT
TAAAAAAGCTCATCTCAACAGAGGCTCAACAACTTTAAAAATTCATTTTAAAAAAATTCC
Found at i:24151798 original size:24 final size:24
Alignment explanation
Indices: 24151766--24151815 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
24151756 GAGGCTTAAC
24151766 AACTTTAAAAATTCTCATCTTGAA
1 AACTTTAAAAATTCTCATCTTGAA
*
24151790 AACTTTAAAAATTCTTATCTTGAA
1 AACTTTAAAAATTCTCATCTTGAA
24151814 AA
1 AA
24151816 TGCTCCTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.38
Consensus pattern (24 bp):
AACTTTAAAAATTCTCATCTTGAA
Found at i:24151885 original size:48 final size:49
Alignment explanation
Indices: 24151790--24152012 Score: 200
Period size: 49 Copynumber: 4.5 Consensus size: 49
24151780 TCATCTTGAA
* * * * *
24151790 AACTTTAAAAATTCTTATCTTGAAAATGCTCCTCTCAGCAAAAGCTCAAC
1 AACTTTAAAAA-TCTCATCTTGAAAAAGATCCTCTAAGCAAATGCTCAAC
* * * *
24151840 AATTTTAAAAATCTCAT-GTGAAAAAGATCCTTTAAGCAGATGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAGATCCTCTAAGCAAATGCTCAAC
* * * * *
24151888 AACTTTAAAAAT-TTATCTTGAAAAAAGCTTCTCTCAGTAAATGCTCAAC
1 AACTTTAAAAATCTCATCTTG-AAAAAGATCCTCTAAGCAAATGCTCAAC
* * * * * *
24151937 AACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAA-GCTTAAC
1 AACTTTAAAAATCTCATCTTGAAAAA-GATCCTCTAAGCA-AATGCTCAAC
24151987 AACTTTAAAAATTCTCATCTTGAAAA
1 AACTTTAAAAA-TCTCATCTTGAAAA
24152013 CTTTAAAAAT
Statistics
Matches: 144, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
47 3 0.02
48 37 0.26
49 44 0.31
50 44 0.31
51 16 0.11
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (49 bp):
AACTTTAAAAATCTCATCTTGAAAAAGATCCTCTAAGCAAATGCTCAAC
Found at i:24151988 original size:50 final size:49
Alignment explanation
Indices: 24151790--24152012 Score: 236
Period size: 50 Copynumber: 4.5 Consensus size: 49
24151780 TCATCTTGAA
* * *
24151790 AACTTTAAAAATTCTTATCTTGAAAATGCTCCTCTCAGCAAAAGCTCAAC
1 AACTTTAAAAA-TCTCATCTTGAAAAAGCTCCTCTCAGCAGAAGCTCAAC
* * * * * *
24151840 AATTTTAAAAATCTCAT-GTGAAAAAGATCCTTTAAGCAGATGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCAGCAGAAGCTCAAC
* * *
24151888 AACTTTAAAAAT-TTATCTTGAAAAAAGCTTCTCTCAGTA-AATGCTCAAC
1 AACTTTAAAAATCTCATCTTG-AAAAAGCTCCTCTCAGCAGAA-GCTCAAC
* * * *
24151937 AACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAAGCTTAAC
1 AACTTTAAAAATCTCATCTTGAAAAA-GCTCCTCTCAGCAGAAGCTCAAC
24151987 AACTTTAAAAATTCTCATCTTGAAAA
1 AACTTTAAAAA-TCTCATCTTGAAAA
24152013 CTTTAAAAAT
Statistics
Matches: 143, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
47 3 0.02
48 38 0.27
49 42 0.29
50 44 0.31
51 16 0.11
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.30
Consensus pattern (49 bp):
AACTTTAAAAATCTCATCTTGAAAAAGCTCCTCTCAGCAGAAGCTCAAC
Found at i:24151989 original size:221 final size:221
Alignment explanation
Indices: 24151635--24152226 Score: 925
Period size: 221 Copynumber: 2.7 Consensus size: 221
24151625 TTATCTTGAA
* * * * * * * *
24151635 AAAAAGCTCATCTCAGCAGAAGCTCAACGACTTTTAAAATTTTATCTTG-AAAAAGGTTCTTTTC
1 AAAAAGATCCTCTAAGCAGATGCTCAACAAC-TTTAAAAATTTATCTTGAAAAAAGCTTC-TCTC
** * * * *
24151699 AACAAAAGCTCAACAACTTTTAAAGAATTTTCATCTTGAAAAAAGCTTATATCAGTAGAGGCTTA
64 AGTAAATGCTCAACAAC-TTTAAA-AA-TCTCATCTTGAAAAAGGCTCATATCAGTAGAGGCTTA
24151764 ACAACTTTAAAAATTCTCATCTTGAAAACTTTAAAAATTCTTATCTTGAAAATGCTCCTCTCAGC
126 ACAACTTTAAAAATTCTCATCTTGAAAACTTTAAAAATTCTTATCTTGAAAATGCTCCTCTCAGC
*
24151829 AAAAGCTCAACAATTTTAAAAATCTCATGTG
191 AAAAGCTCAACAATTTTAAAAATCTCATCTG
*
24151860 AAAAAGATCCTTTAAGCAGATGCTCAACAACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAG
1 AAAAAGATCCTCTAAGCAGATGCTCAACAACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAG
*
24151925 TAAATGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAAGCTTAACAAC
66 TAAATGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAGGCTTAACAAC
* *
24151990 TTTAAAAATTCTCATCTTGAAAACTTTAAAAATTCTTATCTTGAAAATGCTTCTCTCAGCAGAAG
131 TTTAAAAATTCTCATCTTGAAAACTTTAAAAATTCTTATCTTGAAAATGCTCCTCTCAGCAAAAG
*
24152055 CTCAACAATTTTAAGAATCTCATCTG
196 CTCAACAATTTTAAAAATCTCATCTG
24152081 AAAAAGATCCTCTAAGCAGATGCTCAACAACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAG
1 AAAAAGATCCTCTAAGCAGATGCTCAACAACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAG
* *
24152146 TAAATGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGGCTCTTATCAGTAGAGGCTCAACAAC
66 TAAATGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAGGCTTAACAAC
24152211 TTTTAAAAATTCTCAT
131 -TTTAAAAATTCTCAT
24152227 ATTAAAAAAG
Statistics
Matches: 341, Mismatches: 24, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
221 251 0.74
222 17 0.05
223 6 0.02
224 33 0.10
225 34 0.10
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (221 bp):
AAAAAGATCCTCTAAGCAGATGCTCAACAACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAG
TAAATGCTCAACAACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAGGCTTAACAAC
TTTAAAAATTCTCATCTTGAAAACTTTAAAAATTCTTATCTTGAAAATGCTCCTCTCAGCAAAAG
CTCAACAATTTTAAAAATCTCATCTG
Found at i:24152019 original size:24 final size:24
Alignment explanation
Indices: 24151987--24152036 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
24151977 GAAGCTTAAC
24151987 AACTTTAAAAATTCTCATCTTGAA
1 AACTTTAAAAATTCTCATCTTGAA
*
24152011 AACTTTAAAAATTCTTATCTTGAA
1 AACTTTAAAAATTCTCATCTTGAA
24152035 AA
1 AA
24152037 TGCTTCTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.04, T:0.38
Consensus pattern (24 bp):
AACTTTAAAAATTCTCATCTTGAA
Found at i:24152054 original size:74 final size:72
Alignment explanation
Indices: 24151937--24152084 Score: 183
Period size: 74 Copynumber: 2.0 Consensus size: 72
24151927 AATGCTCAAC
* *
24151937 AACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGTAGAAGCTTAACAACTTTAAAAATTCT
1 AACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGCAGAAGCTCAACAACTTTAAAAA-TCT
24152002 CATCTTGAA
65 CATC-TGAA
* * * * *
24152011 AACTTTAAAAATTCTTATCTTG-AAAATGCTTC-TCTCAGCAGAAGCTCAACAATTTTAAGAATC
1 AACTTTAAAAA-TCTCATCTTGAAAAAGGC-TCATATCAGCAGAAGCTCAACAACTTTAAAAATC
24152074 TCATCTGAA
64 TCATCTGAA
24152083 AA
1 AA
24152085 AGATCCTCTA
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
72 6 0.09
73 7 0.11
74 41 0.63
75 11 0.17
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (72 bp):
AACTTTAAAAATCTCATCTTGAAAAAGGCTCATATCAGCAGAAGCTCAACAACTTTAAAAATCTC
ATCTGAA
Found at i:24152058 original size:124 final size:119
Alignment explanation
Indices: 24151888--24152132 Score: 314
Period size: 124 Copynumber: 2.0 Consensus size: 119
24151878 GATGCTCAAC
*
24151888 AACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAGTAAATGCTCAACAACTTTAAAAATCTCA
1 AACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAGCAAATGCTCAACAACTTTAAAAATCTCA
* * * *
24151953 TCTTGAAAAAGGCTCATATCAGTAGAAGCTTAACAACTTTAAAAATTCTCATCTTGAA
66 TC-TGAAAAA-GATCATATAAGCAGAAGCTCAACAACTTTAAAAATT-T-ATCTTGAA
* * *
24152011 AACTTTAAAAATTCTTATCTTG-AAAATGCTTCTCTCAGCAGAA-GCTCAACAATTTTAAGAATC
1 AACTTTAAAAA-T-TTATCTTGAAAAAAGCTTCTCTCAGCA-AATGCTCAACAACTTTAAAAATC
* * *
24152074 TCATCTGAAAAAGATCCTCTAAGCAGATGCTCAACAACTTTAAAAATTTATCTTGAA
63 TCATCTGAAAAAGATCATATAAGCAGAAGCTCAACAACTTTAAAAATTTATCTTGAA
24152131 AA
1 AA
24152133 AAGCTTCTCT
Statistics
Matches: 108, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
120 10 0.09
121 1 0.01
122 29 0.27
123 18 0.17
124 40 0.37
125 10 0.09
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.31
Consensus pattern (119 bp):
AACTTTAAAAATTTATCTTGAAAAAAGCTTCTCTCAGCAAATGCTCAACAACTTTAAAAATCTCA
TCTGAAAAAGATCATATAAGCAGAAGCTCAACAACTTTAAAAATTTATCTTGAA
Found at i:24152156 original size:49 final size:50
Alignment explanation
Indices: 24152011--24152519 Score: 506
Period size: 48 Copynumber: 10.4 Consensus size: 50
24152001 TCATCTTGAA
* * * *
24152011 AACTTTAAAAATTCTTATCTTG-AAAATGCTTCTCTCAGCAGAAGCTCAAC
1 AACTTTAAAAA-TCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* * * * *
24152061 AATTTTAAGAATCTCATC-TG-AAAAAGATCCTCTAAGCAGATGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* * * * *
24152109 AACTTTAAAAAT-TTATCTTGAAAAAAGCTTCTCTCAGTAAATGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* * * *
24152158 AACTTTAAAAATCTCATCTTGAAAAAGGCTCTTATCAGTAGAGGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* *
24152208 AACTTTTAAAAATTCTCATATT-AAAAAAGGCTCCTCTCAACAGAGGCTCAAC
1 AAC-TTTAAAAA-TCTCATCTTGAAAAAA-GCTCCTCTCAGCAGAGGCTCAAC
* ** * *
24152260 AACTTTTAAAATCTCATCTTGAAAAAAGCTAATTTTAGCAGAGGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* * * *
24152310 AACTTT-AAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAAAGGATTAAT
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* * *
24152359 AAATTT-AAAATCTCATCTTG-AAAAAGCTCCTATAAGCAGAGGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
** * *
24152407 AACTTT-AAAAT-TTTTCTTGAAAAAAGCTGCTCTCAGCAGAGACTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
* * * * *
24152455 AACTTT-AAAAT-TTATCTTGAAAAAAGTTCTTTTCAGCAGAAGCTCAAC
1 AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
*
24152503 AACTGT-AAAAT-TCATCT
1 AACTTTAAAAATCTCATCT
24152520 ATTCTCAAAA
Statistics
Matches: 384, Mismatches: 67, Indels: 18
0.82 0.14 0.04
Matches are distributed among these distances:
47 10 0.03
48 149 0.39
49 95 0.25
50 74 0.19
51 26 0.07
52 30 0.08
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.29
Consensus pattern (50 bp):
AACTTTAAAAATCTCATCTTGAAAAAAGCTCCTCTCAGCAGAGGCTCAAC
Found at i:24162292 original size:142 final size:142
Alignment explanation
Indices: 24162087--24162366 Score: 416
Period size: 142 Copynumber: 2.0 Consensus size: 142
24162077 AAAAAGATCT
* *** * *
24162087 ACTCTTCCTTAGTCTTCAATGTTGGCCATCGACTTTTACAGAACTTTTCAATTGGTGTTTTATTT
1 ACTCTTCCTTAGTCTTCAATATTGGCCAAAAACTTTTACAAAACTTTTCAATTGGTGTCTTATTT
* * * *
24162152 CAAAGATACGACTTTGAGAAAATACTCTTCTCGCACTTGAAATGACTTTTAACCTACACATATAA
66 CAAAGATACAACTTTGAGAAAACACTATTCTCGCACTTGAAATGACTTTTAACCCACACATATAA
24162217 TAGCGATGACCC
131 TAGCGATGACCC
* * *
24162229 ACTCTTTCTTAGTCTTCAATATTGGCTAAAAACTTTTACAAAACTTTTCAATTTGTGTCTTATTT
1 ACTCTTCCTTAGTCTTCAATATTGGCCAAAAACTTTTACAAAACTTTTCAATTGGTGTCTTATTT
* * *
24162294 CAAAGATACAACTTTGAGAAAACACTATTTTCGTACTTGAAATGACTTTTAACCCATACATATAA
66 CAAAGATACAACTTTGAGAAAACACTATTCTCGCACTTGAAATGACTTTTAACCCACACATATAA
24162359 TAGCGATG
131 TAGCGATG
24162367 TACATCCTAT
Statistics
Matches: 122, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
142 122 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (142 bp):
ACTCTTCCTTAGTCTTCAATATTGGCCAAAAACTTTTACAAAACTTTTCAATTGGTGTCTTATTT
CAAAGATACAACTTTGAGAAAACACTATTCTCGCACTTGAAATGACTTTTAACCCACACATATAA
TAGCGATGACCC
Found at i:24164553 original size:17 final size:18
Alignment explanation
Indices: 24164516--24164554 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
24164506 ATATATTATT
24164516 TTATT-AATATTTATACA
1 TTATTAAATATTTATACA
24164533 -TATTAAATATTTATA-A
1 TTATTAAATATTTATACA
24164549 TTATTA
1 TTATTA
24164555 GATTAAATGA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.25
17 15 0.75
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTAAATATTTATACA
Found at i:24167037 original size:10 final size:10
Alignment explanation
Indices: 24167022--24167051 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
24167012 ATTAAATTTT
24167022 TATATTTTAA
1 TATATTTTAA
24167032 TATATTTTAA
1 TATATTTTAA
24167042 T-TATTTTAA
1 TATATTTTAA
24167051 T
1 T
24167052 TGAATAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TATATTTTAA
Found at i:24169865 original size:42 final size:42
Alignment explanation
Indices: 24169806--24169889 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
24169796 GGGGAGAATT
*
24169806 TTCTCCTAGAGGGGCAAGAGATGCTGCAACTATGCGTGCTTC
1 TTCTCCCAGAGGGGCAAGAGATGCTGCAACTATGCGTGCTTC
* *
24169848 TTCTCCCAGAGGGGCAAGAGTTGCTGCAACTATGGGTGCTTC
1 TTCTCCCAGAGGGGCAAGAGATGCTGCAACTATGCGTGCTTC
24169890 AAATCGTGTC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.20, C:0.24, G:0.30, T:0.26
Consensus pattern (42 bp):
TTCTCCCAGAGGGGCAAGAGATGCTGCAACTATGCGTGCTTC
Found at i:24175963 original size:49 final size:49
Alignment explanation
Indices: 24175891--24175986 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
24175881 ACAAAAGGAG
*
24175891 AAAACTTTCGGTTGCATGCATGAGATTCAAGAGTCAATCCCAACATTAT
1 AAAACTTTCGGTTGCATGCATGAGAGTCAAGAGTCAATCCCAACATTAT
24175940 AAAACTTTCGGTTGCATGCATGAGAGTCAAGAGTCAATCCCAACATT
1 AAAACTTTCGGTTGCATGCATGAGAGTCAAGAGTCAATCCCAACATT
24175987 GTTTATTCAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.34, C:0.21, G:0.18, T:0.27
Consensus pattern (49 bp):
AAAACTTTCGGTTGCATGCATGAGAGTCAAGAGTCAATCCCAACATTAT
Found at i:24178600 original size:62 final size:62
Alignment explanation
Indices: 24178461--24178631 Score: 191
Period size: 62 Copynumber: 2.7 Consensus size: 62
24178451 TATTAAATGC
* * * * * *
24178461 ATTTTTGGCCTAAAATCCCTTAAATAATCCATTTAAAAAATTTTAAAAAGAGAATATTGAAGGT
1 ATTTTTGACCAAAAATACCTTCAATAATCCA--TAAAAAATTTTGAAAAGAGAATATTGAAGAT
** *
24178525 ATTTTCAACCAAAAATACCTTCAATAATCCATACAAAAATTTTGAAAAG-GATTATTGAAGAT
1 ATTTTTGACCAAAAATACCTTCAATAATCCATA-AAAAATTTTGAAAAGAGAATATTGAAGAT
* *
24178587 ATTTTTGTCCAAAAACACCTTCAATAATCCATATAAAAAATTTTG
1 ATTTTTGACCAAAAATACCTTCAATAATCC--ATAAAAAATTTTG
24178632 TTGAGGGGAT
Statistics
Matches: 91, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
62 39 0.43
63 24 0.26
64 28 0.31
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.33
Consensus pattern (62 bp):
ATTTTTGACCAAAAATACCTTCAATAATCCATAAAAAATTTTGAAAAGAGAATATTGAAGAT
Found at i:24178675 original size:50 final size:49
Alignment explanation
Indices: 24178595--24178691 Score: 124
Period size: 50 Copynumber: 2.0 Consensus size: 49
24178585 ATATTTTTGT
* *
24178595 CCAAAAACACCTTCAATAATCCATATAAAAAATTTTGTTGAGGGGATTGA
1 CCAAAAACACCTTCAATAATCCATAGAAAAAA-TTTATTGAGGGGATTGA
* * *
24178645 CCAAAAACGCCTTTAATAATCCCCT-GAAAAAATTTATTGAGGGGATT
1 CCAAAAACACCTTCAATAAT-CCATAGAAAAAATTTATTGAGGGGATT
24178692 ATTTAATACA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
49 14 0.34
50 24 0.59
51 3 0.07
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (49 bp):
CCAAAAACACCTTCAATAATCCATAGAAAAAATTTATTGAGGGGATTGA
Found at i:24178880 original size:62 final size:61
Alignment explanation
Indices: 24178645--24179232 Score: 325
Period size: 62 Copynumber: 9.4 Consensus size: 61
24178635 AGGGGATTGA
* * * * * * **
24178645 CCAAAAACGCCTTTAATAATCCCCTGAAAAAATTT-ATTGAGGGGATTATTTAATACATTTTTG
1 CCAAAAACGCCTTCAATAATCCTCTAAAAAAATTTGA---AAGAGATTATTGAAGGCATTTTTG
** * * ** *
24178708 CTTAAAGCGCCTTCAATAATCTCTTTTAAAAATTTATTGAAAG-GATTATTGAAGGC-TTTTAGG
1 CCAAAAACGCCTTCAATAATC-C-TCTAAAAAAAT-TTGAAAGAGATTATTGAAGGCATTTT-TG
* *** * * * *
24178771 CCTAAAATATCTTCAATAATCCTCTGAAAAAAATTTTTAAA-AAATTATTAAAGGTATTTTTTG
1 CCAAAAACGCCTTCAATAATCCTCT-AAAAAAA-TTTGAAAGAGATTATTGAAGGCA-TTTTTG
* * *
24178834 CTAAAAACGCCTTCAATAATCCTCTAAAAAAATTTGAAAGAGATTATTGAAAGCATTTTTTA
1 CCAAAAACGCCTTCAATAATCCTCTAAAAAAATTTGAAAGAGATTATTGAAGGCA-TTTTTG
* * * * *
24178896 CCATAAACGCCTTCAATAATCCTTTATAAAAATTTATTAAAGCA-ATTATTGAATGCATTTTTGG
1 CCAAAAACGCCTTCAATAATCCTCTA-AAAAAATT-TGAAAG-AGATTATTGAAGGCATTTTT-G
* * * * *
24178960 TCAAAAATGCATTCAATAATCCTTTGAAAAAATTT-ACAATG-GATTATTGAAGGCATTTTTG
1 CCAAAAACGCCTTCAATAATCCTCTAAAAAAATTTGA-AA-GAGATTATTGAAGGCATTTTTG
* * * * *
24179021 ACCAAAAA-ACCTTCAATAAT-CTCTCATAAAATTTTGTTGAAGGGATTATTGAAGGCATTTTTG
1 -CCAAAAACGCCTTCAATAATCCTCT-AAAAAAATTTG--AAAGAGATTATTGAAGGCATTTTTG
* * * * * * **
24179084 ATCAAAAATGCATTCAATAATCTTTTAAAATAAATTGGAAAG-GATTATTGAAGGGGTTTTTGG
1 -CCAAAAACGCCTTCAATAATCCTCTAAAA-AAATTTGAAAGAGATTATTGAAGGCATTTTT-G
* ** * *
24179147 CCAAAAACACCTTCAATAATCCCTCATAAAAATTTATTGACAG-GATTATTTAAGGCATTTTTGG
1 CCAAAAACGCCTTCAATAAT-CCTC-TAAAAAAAT-TTGAAAGAGATTATTGAAGGCATTTTT-G
** * *
24179211 CCTGAAACGCCTTGAAAAATCC
1 CCAAAAACGCCTTCAATAATCC
24179233 CATTGAATTT
Statistics
Matches: 405, Mismatches: 89, Indels: 62
0.73 0.16 0.11
Matches are distributed among these distances:
60 3 0.01
61 27 0.07
62 132 0.33
63 125 0.31
64 101 0.25
65 14 0.03
66 2 0.00
67 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (61 bp):
CCAAAAACGCCTTCAATAATCCTCTAAAAAAATTTGAAAGAGATTATTGAAGGCATTTTTG
Found at i:24178927 original size:126 final size:124
Alignment explanation
Indices: 24178641--24179209 Score: 363
Period size: 126 Copynumber: 4.5 Consensus size: 124
24178631 GTTGAGGGGA
* * * * * ** * **
24178641 TTGACCAAAAACGCCTTTAATAATCCCCTGAAAAAATTTATTGAGGGGATTATTTAATACATTTT
1 TTGACCAAAAA-ACCTTCAATAATCCTCTG-AAAAATTTATTAAAGAAATTATTAAAGGCATTTT
* * * ** * * *
24178706 TGCT-TAAAGCGCCTTCAATAAT-CTCTTTTAAAAATTTATTGAAAGGATTATTGAAGGC-TTT
64 TGCTCAAAAACGCATTCAATAATCCTC-TAAAAAAATTTA--CAATGGATTATTGAAAGCATTT
* * * * *
24178767 TAGGCCTAAAATATCTTCAATAATCCTCTGAAAAAAATTT-TTAAA-AAATTATTAAAGGTATTT
1 TTGACC-AAAAAACCTTCAATAATCCTCTG--AAAAATTTATTAAAGAAATTATTAAAGGCA-TT
*
24178830 TTTGCT-AAAAACGCCTTCAATAATCCTCTAAAAAAATTTGA-AA-GAGATTATTGAAAGCATTT
62 TTTGCTCAAAAACGCATTCAATAATCCTCTAAAAAAATTT-ACAATG-GATTATTGAAAGCATTT
* ** * * * * *
24178892 TTTACCATAAACGCCTTCAATAATCCTTTATAAAAATTTATTAAAGCAATTATTGAATGCATTTT
1 TTGACCA-AAAAACCTTCAATAATCCTCT-GAAAAATTTATTAAAGAAATTATTAAAGGCATTTT
* * * * *
24178957 TGGTCAAAAATGCATTCAATAATCCTTTGAAAAAATTTACAATGGATTATTGAAGGCATTT
64 TGCTCAAAAACGCATTCAATAATCCTCTAAAAAAATTTACAATGGATTATTGAAAGCATTT
* * * ** *
24179018 TTGACCAAAAAACCTTCAATAATCTCTCAT-AAAATTTTGTTGAAGGGATTATTGAAGGCATTTT
1 TTGACCAAAAAACCTTCAATAATC-CTC-TGAAAAATTTATTAAAGAAATTATTAAAGGCATTTT
* * * * * * **
24179082 TGATCAAAAATGCATTCAATAATCTTTTAAAATAAATTGGA-AA-GGATTATTGAAGGGGTTT
64 TGCTCAAAAACGCATTCAATAATCCTCTAAAA-AAATT-TACAATGGATTATTGAAAGCATTT
* * * *
24179143 TTGGCCAAAAACACCTTCAATAATCCCTCAT-AAAAATTTATTGACAG-GATTATTTAAGGCATT
1 TTGACCAAAAA-ACCTTCAATAAT-CCTC-TGAAAAATTTATT-AAAGAAATTATTAAAGGCATT
24179206 TTTG
62 TTTG
24179210 GCCTGAAACG
Statistics
Matches: 362, Mismatches: 60, Indels: 42
0.78 0.13 0.09
Matches are distributed among these distances:
123 1 0.00
124 23 0.06
125 143 0.40
126 172 0.48
127 23 0.06
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.36
Consensus pattern (124 bp):
TTGACCAAAAAACCTTCAATAATCCTCTGAAAAATTTATTAAAGAAATTATTAAAGGCATTTTTG
CTCAAAAACGCATTCAATAATCCTCTAAAAAAATTTACAATGGATTATTGAAAGCATTT
Found at i:24178936 original size:125 final size:124
Alignment explanation
Indices: 24178719--24179209 Score: 474
Period size: 126 Copynumber: 3.9 Consensus size: 124
24178709 TTAAAGCGCC
** * * * *
24178719 TTCAATAATCTCTTTTAAAAATTTATTGAAAGGATTATTGAAGGC-TTTTAGGCCTAAAATATCT
1 TTCAATAATC-C-TTTAAAAAAAT-TTGAAAGGATTATTGAAGGCATTTTTGACC-AAAACACCT
* * * * * * *
24178783 TCAATAATCCTCTGAAAAAAATTT-TTAAAAAATTATTAAAGGTATTTTTTGCT-AAAAACGCC
62 TCAATAATCCTCTCATAAAAATTTATTAAAAAATTATTGAAGGCA-TTTTTGATCAAAAATGCA
* * * *
24178845 TTCAATAATCCTCTAAAAAAATTTGAAAGAGATTATTGAAAGCATTTTTTACCATAAACGCCTTC
1 TTCAATAATCCTTTAAAAAAATTTGAAAG-GATTATTGAAGGCATTTTTGACCA-AAACACCTTC
* * * *
24178910 AATAATCCT-TTATAAAAATTTATTAAAGCAATTATTGAATGCATTTTTGGTCAAAAATGCA
64 AATAATCCTCTCATAAAAATTTATTAAA-AAATTATTGAAGGCATTTTTGATCAAAAATGCA
* *
24178971 TTCAATAATCCTTTGAAAAAATTT-ACAATGGATTATTGAAGGCATTTTTGACCAAAAAACCTTC
1 TTCAATAATCCTTTAAAAAAATTTGA-AA-GGATTATTGAAGGCATTTTTGACCAAAACACCTTC
* * ***
24179035 AATAAT-CTCTCATAAAATTTTGTTGAAGGGATTATTGAAGGCATTTTTGATCAAAAATGCA
64 AATAATCCTCTCATAAAAATTTATT-AAAAAATTATTGAAGGCATTTTTGATCAAAAATGCA
* * ** *
24179096 TTCAATAATCTTTTAAAATAAATTGGAAAGGATTATTGAAGGGGTTTTTGGCCAAAAACACCTTC
1 TTCAATAATCCTTTAAAA-AAATTTGAAAGGATTATTGAAGGCATTTTTGACC-AAAACACCTTC
* ** *
24179161 AATAATCC-CTCATAAAAATTTATTGACAGGATTATTTAAGGCATTTTTG
64 AATAATCCTCTCATAAAAATTTATT-AAAAAATTATTGAAGGCATTTTTG
24179210 GCCTGAAACG
Statistics
Matches: 306, Mismatches: 45, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
123 7 0.02
124 33 0.11
125 128 0.42
126 135 0.44
127 3 0.01
ACGTcount: A:0.39, C:0.13, G:0.12, T:0.36
Consensus pattern (124 bp):
TTCAATAATCCTTTAAAAAAATTTGAAAGGATTATTGAAGGCATTTTTGACCAAAACACCTTCAA
TAATCCTCTCATAAAAATTTATTAAAAAATTATTGAAGGCATTTTTGATCAAAAATGCA
Found at i:24180329 original size:24 final size:24
Alignment explanation
Indices: 24180289--24180337 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
24180279 AAACCATATC
* *
24180289 ATATTATGATTATAAATA-AATTA
1 ATATTATAATTAAAAATATAATTA
24180312 ATATTAATAATTAAAAATATAATTA
1 ATATT-ATAATTAAAAATATAATTA
24180337 A
1 A
24180338 AAAAGGTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 5 0.23
24 11 0.50
25 6 0.27
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
ATATTATAATTAAAAATATAATTA
Found at i:24182059 original size:2 final size:2
Alignment explanation
Indices: 24182052--24182078 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
24182042 AGTTTTGTTT
24182052 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
24182079 GATGTCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24185387 original size:14 final size:14
Alignment explanation
Indices: 24185368--24185399 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
24185358 CTTGCTAGCA
*
24185368 TCTCTCTCTTTCTT
1 TCTCTCTCTTCCTT
24185382 TCTCTCTCTTCCTT
1 TCTCTCTCTTCCTT
24185396 TCTC
1 TCTC
24185400 CAAAGTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (14 bp):
TCTCTCTCTTCCTT
Found at i:24197587 original size:6 final size:7
Alignment explanation
Indices: 24197568--24197603 Score: 54
Period size: 7 Copynumber: 4.9 Consensus size: 7
24197558 AATTAAATTA
24197568 AATTTTT
1 AATTTTT
24197575 AATTTTT
1 AATTTTT
24197582 AATTTTT
1 AATTTTT
24197589 AATTTCTT
1 AATTT-TT
24197597 ATATTTT
1 A-ATTTT
24197604 AAATAAATTG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 19 0.70
8 4 0.15
9 4 0.15
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (7 bp):
AATTTTT
Found at i:24204635 original size:27 final size:28
Alignment explanation
Indices: 24204578--24204636 Score: 66
Period size: 27 Copynumber: 2.1 Consensus size: 28
24204568 ATAAATATTT
* *
24204578 TTTAATTACGATAATTGAATGTCTTTAA
1 TTTAATTACGATAATTGAATATCATTAA
* * *
24204606 TTTAATTA-TATAATTGATTATCATTCA
1 TTTAATTACGATAATTGAATATCATTAA
24204633 TTTA
1 TTTA
24204637 CATCATAAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
27 18 0.69
28 8 0.31
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.51
Consensus pattern (28 bp):
TTTAATTACGATAATTGAATATCATTAA
Found at i:24205306 original size:21 final size:22
Alignment explanation
Indices: 24205266--24205306 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
24205256 GTTTAAATGA
* *
24205266 AAAATAATATTAATAATAAAGT
1 AAAATAATAATAAAAATAAAGT
24205288 AAAAT-ATAATAAAAATAAA
1 AAAATAATAATAAAAATAAA
24205307 AATTTATTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAATAATAATAAAAATAAAGT
Found at i:24205820 original size:2 final size:2
Alignment explanation
Indices: 24205813--24205838 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24205803 CCTGTTCATT
24205813 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
24205839 CACTTTGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24219213 original size:22 final size:21
Alignment explanation
Indices: 24219187--24219238 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 21
24219177 TTCACCCTTA
* *
24219187 AATTTTTTTTGTACTTTTTTTT
1 AATTTTTTTTG-AATCTTTTTT
24219209 AATTTTTATTTGAATCTTTTTT
1 AATTTTT-TTTGAATCTTTTTT
24219231 -ATTTTTTT
1 AATTTTTTT
24219239 ATATTTATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 6 0.22
22 15 0.56
23 4 0.15
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.75
Consensus pattern (21 bp):
AATTTTTTTTGAATCTTTTTT
Found at i:24219215 original size:23 final size:22
Alignment explanation
Indices: 24219184--24219238 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 22
24219174 GAATTCACCC
* * *
24219184 TTAAATTTTTTTTGTACTTTTTT
1 TTAATTTTTTTTTG-AATCTTTT
*
24219207 TTAATTTTTATTTGAATCTTTT
1 TTAATTTTTTTTTGAATCTTTT
24219229 TT-ATTTTTTT
1 TTAATTTTTTT
24219239 ATATTTATCC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 7 0.26
22 8 0.30
23 12 0.44
ACGTcount: A:0.18, C:0.04, G:0.04, T:0.75
Consensus pattern (22 bp):
TTAATTTTTTTTTGAATCTTTT
Found at i:24222807 original size:18 final size:18
Alignment explanation
Indices: 24222776--24222812 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24222766 ATTTATTTTT
* *
24222776 TAATTTTTTTATTATAAA
1 TAATTATTTAATTATAAA
24222794 TAATTATTTAATTATAAA
1 TAATTATTTAATTATAAA
24222812 T
1 T
24222813 TTAATTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TAATTATTTAATTATAAA
Found at i:24222827 original size:15 final size:17
Alignment explanation
Indices: 24222786--24222831 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
24222776 TAATTTTTTT
24222786 ATTATAAATAATT-ATTTA
1 ATTATAAAT--TTAATTTA
24222804 ATTATAAATTTAATTTA
1 ATTATAAATTTAATTTA
24222821 A-TA-AAATTTAA
1 ATTATAAATTTAA
24222832 ATTTTAGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.30
16 4 0.15
17 6 0.22
18 9 0.33
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
ATTATAAATTTAATTTA
Found at i:24223041 original size:14 final size:15
Alignment explanation
Indices: 24223014--24223052 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
24223004 ATCGATTTAA
24223014 AAAATCGATTATAAAT
1 AAAATCGA-TATAAAT
24223030 AAAATCGA-ATAAAT
1 AAAATCGATATAAAT
*
24223044 TAAATCGAT
1 AAAATCGAT
24223053 TCAATCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 13 0.62
16 8 0.38
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (15 bp):
AAAATCGATATAAAT
Found at i:24223708 original size:14 final size:15
Alignment explanation
Indices: 24223683--24223711 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
24223673 AAGAGTTAAG
24223683 TTATATTCATAATTA
1 TTATATTCATAATTA
24223698 TTATA-TCATAATTA
1 TTATATTCATAATTA
24223712 AATTATAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (15 bp):
TTATATTCATAATTA
Found at i:24223894 original size:13 final size:13
Alignment explanation
Indices: 24223876--24223900 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24223866 ACACATGAAA
24223876 AAGTTAAAATTTC
1 AAGTTAAAATTTC
24223889 AAGTTAAAATTT
1 AAGTTAAAATTT
24223901 TGAAATCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (13 bp):
AAGTTAAAATTTC
Done.