Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019168481.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_8, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 25818110
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 67000 characters in sequence are not A, C, G, or T
File 23 of 127
Found at i:5084456 original size:22 final size:21
Alignment explanation
Indices: 5084431--5084485 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
5084421 TATTAACATT
5084431 TAAATAATATATAATTTAAATA
1 TAAATAATATATAATTT-AATA
*
5084453 TAAAT-ATGATAT-ATTTATTA
1 TAAATAAT-ATATAATTTAATA
*
5084473 TAAATATTATATA
1 TAAATAATATATA
5084486 TGATATAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
20 12 0.43
21 7 0.25
22 9 0.32
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TAAATAATATATAATTTAATA
Found at i:5084692 original size:30 final size:27
Alignment explanation
Indices: 5084628--5084695 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 27
5084618 TAATTAAATA
* *
5084628 AAATATTATTTAAAAATTAAATATTTAT
1 AAATA-TAATTAAAAATTAAATATCTAT
5084656 -AATATAATTAAAAATTAAAATGATACTAT
1 AAATATAATTAAAAATT-AAAT-AT-CTAT
5084685 AAATATAATTA
1 AAATATAATTA
5084696 TTAATTTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 11 0.32
27 8 0.24
28 2 0.06
29 3 0.09
30 10 0.29
ACGTcount: A:0.57, C:0.01, G:0.01, T:0.40
Consensus pattern (27 bp):
AAATATAATTAAAAATTAAATATCTAT
Found at i:5099578 original size:38 final size:38
Alignment explanation
Indices: 5099536--5099609 Score: 139
Period size: 38 Copynumber: 1.9 Consensus size: 38
5099526 GTGTCTGTAG
*
5099536 CAGCTGTTGCTGAAGAAACCAATGGAAAATTAATATAA
1 CAGCTGTTGCCGAAGAAACCAATGGAAAATTAATATAA
5099574 CAGCTGTTGCCGAAGAAACCAATGGAAAATTAATAT
1 CAGCTGTTGCCGAAGAAACCAATGGAAAATTAATAT
5099610 TATTGTTCTG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.43, C:0.15, G:0.19, T:0.23
Consensus pattern (38 bp):
CAGCTGTTGCCGAAGAAACCAATGGAAAATTAATATAA
Found at i:5100154 original size:12 final size:12
Alignment explanation
Indices: 5100134--5100163 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
5100124 TTTTTAATAA
5100134 AAATATAAAAAT
1 AAATATAAAAAT
*
5100146 AAATTTAAAAAT
1 AAATATAAAAAT
5100158 AAATAT
1 AAATAT
5100164 TCAATAAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AAATATAAAAAT
Found at i:5102217 original size:37 final size:37
Alignment explanation
Indices: 5102167--5102239 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
5102157 AGTACAGAAT
*
5102167 TTATTTTCTTAAGAGAAGTATAAATAGTGAAAAGATA
1 TTATTTTCTTAAGAGAAGTACAAATAGTGAAAAGATA
*
5102204 TTATTTTCTTAAGAGCAGTACAAATAGTGAAAAGAT
1 TTATTTTCTTAAGAGAAGTACAAATAGTGAAAAGAT
5102240 TCTTGGTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.34
Consensus pattern (37 bp):
TTATTTTCTTAAGAGAAGTACAAATAGTGAAAAGATA
Found at i:5104477 original size:13 final size:13
Alignment explanation
Indices: 5104459--5104491 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
5104449 ATGCTTAGTA
5104459 CATTCTCTGGTTC
1 CATTCTCTGGTTC
5104472 CATTCTCTGGTTC
1 CATTCTCTGGTTC
5104485 CATTCTC
1 CATTCTC
5104492 AATGGCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.09, C:0.33, G:0.12, T:0.45
Consensus pattern (13 bp):
CATTCTCTGGTTC
Found at i:5114473 original size:15 final size:14
Alignment explanation
Indices: 5114453--5114487 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
5114443 AAAAACATCT
5114453 TAAATAATCCTCAAA
1 TAAATAAT-CTCAAA
5114468 TAAATAATCTCAAA
1 TAAATAATCTCAAA
5114482 -AAATAA
1 TAAATAA
5114488 ATGCTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.30
14 6 0.30
15 8 0.40
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAATCTCAAA
Found at i:5115024 original size:64 final size:63
Alignment explanation
Indices: 5114956--5115142 Score: 236
Period size: 64 Copynumber: 2.9 Consensus size: 63
5114946 CGTTTTTTGT
5114956 AATAATCCCTTTTAAAAAAATATTAGAGATTATTTAA-AGTGTTTTTGATAAAAAAAAAGCTTTA
1 AATAAT-CCTTTTAAAAAAATATTAGAGATTATTTAAGA-TGTTTTTGATAAAAAAAAAGCTTTA
* * * * * *
5115020 AATAATATCTTTCAAAAAAAT-TGAAGAGTATTATTTAAGATTTTTTTACAAAAAAAAAAAGCTT
1 AATAAT-CCTTTTAAAAAAATAT-TAGAG-ATTATTTAAGATGTTTTT-GATAAAAAAAAAGCTT
5115084 TA
62 TA
5115086 AATAAATCC-TTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA
1 AAT-AATCCTTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA
5115143 TACCTTAAAA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
63 11 0.11
64 39 0.38
65 29 0.28
66 22 0.21
67 3 0.03
ACGTcount: A:0.50, C:0.05, G:0.09, T:0.36
Consensus pattern (63 bp):
AATAATCCTTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAGCTTTA
Found at i:5115164 original size:65 final size:63
Alignment explanation
Indices: 5114965--5115168 Score: 227
Period size: 65 Copynumber: 3.2 Consensus size: 63
5114955 TAATAATCCC
*
5114965 TTTTAAAAAAATATTAGAGATTATTTAA-AGTGTTTTTGATAAAAAAAAAGCTTTAAATAATAT
1 TTTTAAAAAAATATTAGAGATTATTTAAGA-TGTTTTTGATAAAAAAAAAACTTTAAATAATAT
* * * *
5115028 CTTTCAAAAAAAT-TGAAGAGTATTATTTAAGAT-TTTTTTACAAAAAAAAAAAGCTTTAAATAA
1 -TTTTAAAAAAATAT-TAGAG-ATTATTTAAGATGTTTTTGA-TAAAAAAAAAA-CTTTAAATAA
5115091 -AT
61 TAT
* * *
5115093 CCTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAATACCTTAAAAAATAT
1 -TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA-ACTTTAAATAATAT
5115158 TATTTAAAAAA
1 T-TTTAAAAAA
5115169 TGAAAGAATA
Statistics
Matches: 117, Mismatches: 13, Indels: 19
0.79 0.09 0.13
Matches are distributed among these distances:
63 1 0.01
64 50 0.43
65 54 0.46
66 12 0.10
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (63 bp):
TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAACTTTAAATAATAT
Found at i:5115167 original size:64 final size:62
Alignment explanation
Indices: 5114965--5115169 Score: 218
Period size: 64 Copynumber: 3.2 Consensus size: 62
5114955 TAATAATCCC
* *
5114965 TTTTAAAAAAATATTAGAGATTATTTAA-AGTGTTTTTGATAAAAAAAAAGCTTTAAATAATA
1 TTTTAAAAAAATATTAGAGATTATTTAAGA-TGTTTTTGATAAAAAAAAAACTTTAAAAAATA
* * *
5115027 TCTTTCAAAAAAAT-TGAAGAGTATTATTTAAGAT-TTTTTTACAAAAAAAAAAAGCTTTAAATA
1 T-TTT-AAAAAAATAT-TAGAG-ATTATTTAAGATGTTTTTGA-TAAAAAAAAAA-CTTTAAA-A
*
5115090 AATC
59 AATA
* *
5115094 CTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAATACCTTAAAAAATA
1 TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA-ACTTTAAAAAATA
*
5115157 TTATTTAAAAAAT
1 TT-TTAAAAAAAT
5115170 GAAAGAATAC
Statistics
Matches: 117, Mismatches: 14, Indels: 22
0.76 0.09 0.14
Matches are distributed among these distances:
62 1 0.01
63 9 0.08
64 54 0.46
65 38 0.32
66 12 0.10
67 3 0.03
ACGTcount: A:0.51, C:0.04, G:0.08, T:0.37
Consensus pattern (62 bp):
TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAACTTTAAAAAATA
Found at i:5115589 original size:17 final size:18
Alignment explanation
Indices: 5115569--5115614 Score: 60
Period size: 17 Copynumber: 2.7 Consensus size: 18
5115559 AAATTTTAAA
*
5115569 ATATCGCACTTTTTTA-G
1 ATATCACACTTTTTTATG
*
5115586 ATATTACACTTTTTTATG
1 ATATCACACTTTTTTATG
5115604 A-ATCACACTTT
1 ATATCACACTTT
5115615 CTTTCAGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 23 0.92
18 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.07, T:0.48
Consensus pattern (18 bp):
ATATCACACTTTTTTATG
Found at i:5115901 original size:18 final size:18
Alignment explanation
Indices: 5115856--5115903 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
5115846 ACTTAATTTA
5115856 AAATTATA-TTTATAAAAT
1 AAATTATATTTTA-AAAAT
*
5115874 --ATTATTTTTTAAAAAT
1 AAATTATATTTTAAAAAT
5115890 AAATTATATTTTAA
1 AAATTATATTTTAA
5115904 TTATATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 10 0.40
17 4 0.16
18 11 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTATATTTTAAAAAT
Found at i:5115948 original size:18 final size:18
Alignment explanation
Indices: 5115911--5115961 Score: 59
Period size: 17 Copynumber: 2.7 Consensus size: 18
5115901 TAATTATATA
*
5115911 TAAATATAATATTTTTAT
1 TAAATATAATATTTTAAT
5115929 TAAAT-TAATATTTTAAAT
1 TAAATATAATATTTT-AAT
5115947 TAAAATATTAATATT
1 T-AAATA-TAATATT
5115962 ATTATTATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 9 0.32
18 8 0.29
19 4 0.14
21 7 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TAAATATAATATTTTAAT
Found at i:5115970 original size:41 final size:41
Alignment explanation
Indices: 5115889--5115984 Score: 103
Period size: 41 Copynumber: 2.4 Consensus size: 41
5115879 TTTTTAAAAA
* *
5115889 TAAATT-ATATTTT-AATTATATATAAATATAATATTTTTAT
1 TAAATTAATATTTTAAATTAAATATAAATAT-ATATTATTAT
*
5115929 TAAATTAATATTTTAAATTAAAATATTAATAT-TATTATTAT
1 TAAATTAATATTTTAAATT-AAATATAAATATATATTATTAT
*
5115970 T--ATTATTATTTTAAA
1 TAAATTAATATTTTAAA
5115985 AATAATAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
39 13 0.27
40 6 0.12
41 16 0.33
42 4 0.08
43 10 0.20
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (41 bp):
TAAATTAATATTTTAAATTAAATATAAATATATATTATTAT
Found at i:5119764 original size:17 final size:18
Alignment explanation
Indices: 5119728--5119768 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
5119718 AAGAATCAAA
5119728 TTATATATTTTATTAATTT
1 TTATATATTTTA-TAATTT
*
5119747 TTATATATTTTA-ATTTT
1 TTATATATTTTATAATTT
5119764 TTATA
1 TTATA
5119769 AAATAAAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 9 0.43
19 12 0.57
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATATATTTTATAATTT
Found at i:5122881 original size:129 final size:129
Alignment explanation
Indices: 5122679--5122945 Score: 516
Period size: 129 Copynumber: 2.1 Consensus size: 129
5122669 AACAATTCTT
5122679 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
1 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
* *
5122744 TATAGCTCTGAGGATCTAATGACTAGTAATATGGTGGATGAAGAAGCCTTGGTTGAAGTAAATG
66 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
5122808 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
1 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
5122873 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
66 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
5122937 TAGCTGATG
1 TAGCTGATG
5122946 CTGAAATAAT
Statistics
Matches: 136, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 136 1.00
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.26
Consensus pattern (129 bp):
TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
Found at i:5123118 original size:60 final size:60
Alignment explanation
Indices: 5123026--5123174 Score: 282
Period size: 60 Copynumber: 2.5 Consensus size: 60
5123016 GATGCTAGAT
*
5123026 TATGGT-GATGCAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCGATGACTAGTAA
1 TATGGTGGATGAAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCGATGACTAGTAA
5123085 TATGGTGGATGAAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCGATGACTAGTAA
1 TATGGTGGATGAAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCGATGACTAGTAA
5123145 TATGGTGGATGAAGAAGCATTGGTTGATGT
1 TATGGTGGATGAAGAAGCATTGGTTGATGT
5123175 AAATATAGCT
Statistics
Matches: 88, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
59 6 0.07
60 82 0.93
ACGTcount: A:0.29, C:0.09, G:0.31, T:0.31
Consensus pattern (60 bp):
TATGGTGGATGAAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCGATGACTAGTAA
Found at i:5123315 original size:99 final size:99
Alignment explanation
Indices: 5123144--5123345 Score: 341
Period size: 99 Copynumber: 2.0 Consensus size: 99
5123134 ATGACTAGTA
* *
5123144 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCATGCGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCAATGCGAGT
*
5123209 TCATTCCACAATGCTTTCCAATCTGTTGTGGATG
66 TCATTCCACAATGCTTTCCAATCTGTTATGGATG
* * *
5123243 ATATGGAGGATGGAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCAATGCGAGT
*
5123308 TCATTCCATAATGCTTTCCAATCTGTTATGGATG
66 TCATTCCACAATGCTTTCCAATCTGTTATGGATG
5123342 ATAT
1 ATAT
5123346 CCCAGTTCAC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 96 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (99 bp):
ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCAATGCGAGT
TCATTCCACAATGCTTTCCAATCTGTTATGGATG
Found at i:5123570 original size:183 final size:183
Alignment explanation
Indices: 5123243--5123711 Score: 839
Period size: 183 Copynumber: 2.6 Consensus size: 183
5123233 GTTGTGGATG
* * *
5123243 ATATGGAGGATGGAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
*
5123308 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGG
66 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5123373 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGTA
131 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
5123426 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
1 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
* *
5123491 TCATTCCGTAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5123556 TGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
131 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
*
5123609 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
1 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
* *
5123674 TCATTCCACAATGCTTTCCAATCTGTTGTGGATGATAT
66 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATAT
5123712 GGAGGATGGC
Statistics
Matches: 273, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
183 273 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.32
Consensus pattern (183 bp):
ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
Found at i:5123728 original size:282 final size:282
Alignment explanation
Indices: 5123426--5123993 Score: 1010
Period size: 282 Copynumber: 2.0 Consensus size: 282
5123416 ATGACTGGTA
* * *
5123426 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
*
5123491 TCATTCCGTAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5123556 TGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATG
131 CGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATG
5123621 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGTTCATTCCACAAT
196 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGTTCATTCCACAAT
** *
5123686 GCTTTCCAATCTGTTGTGGATG
261 GCCCTCCAATCTGTTGAGGATG
** *
5123708 ATATGGAGGATGGCGAAGCATTGGTTCATTTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
5123773 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5123838 CGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTCGTAATATGGTGGATG
131 CGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATG
* *
5123903 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGACATAATCCATGTGAGTTCATTCCACAAT
196 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGTTCATTCCACAAT
5123968 GCCCTCCAATCTGTTGAGGATG
261 GCCCTCCAATCTGTTGAGGATG
5123990 ATAT
1 ATAT
5123994 CCCAGTTCAC
Statistics
Matches: 272, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
282 272 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (282 bp):
ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
CGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATG
AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGTTCATTCCACAAT
GCCCTCCAATCTGTTGAGGATG
Found at i:5123780 original size:99 final size:99
Alignment explanation
Indices: 5123609--5123810 Score: 316
Period size: 99 Copynumber: 2.0 Consensus size: 99
5123599 ATGACTAGTA
* *
5123609 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
* *
5123674 TCATTCCACAATGCTTTCCAATCTGTTGTGGATG
66 TCATTCCACAATGCTCTCCAATCTGTTATGGATG
** *
5123708 ATATGGAGGATGGCGAAGCATTGGTTCATTTAAATGTAGCTGATGCTGAAATAAT-CAATGTGAG
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCCAA-GTGAG
*
5123772 TTCATTCCATAATGCTCTCCAATCTGTTATGGATG
65 TTCATTCCACAATGCTCTCCAATCTGTTATGGATG
5123807 ATAT
1 ATAT
5123811 CCCAGTTCAC
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
98 3 0.03
99 91 0.97
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (99 bp):
ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
TCATTCCACAATGCTCTCCAATCTGTTATGGATG
Found at i:5123787 original size:465 final size:465
Alignment explanation
Indices: 5123085--5124054 Score: 1735
Period size: 465 Copynumber: 2.1 Consensus size: 465
5123075 TGACTAGTAA
* * *
5123085 TATGGTGGATGAAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCGATGACTAGTAATATGG
1 TATGGT-GATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGG
*
5123150 TGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCATGCGAGTTCATTC
65 TGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCAAGCGAGTTCATTC
*
5123215 CACAATGCTTTCCAATCTGTTGTGGATGATATGGAGGATGGAGAAGCATTGGTTGATGTAAATGT
130 CACAATGCTTTCCAATCTGTTGTGGATGATATGGAGGATGGAGAAGCATTGGTTCATGTAAATGT
*
5123280 AGCTGATGCTGAAATAATCAATGTGAGTTCATTCCATAATGCTTTCCAATCTGTTATGGATGATA
195 AGCTGATGCTGAAATAATCAATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGATA
* *
5123345 TCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCA
260 TCCCAGTTCACAAGATGCTAGATTATGGCGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCA
*
5123410 GAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGA
325 GAACCAATGACTCGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGA
** *
5123475 AATAATCCATGTGAGTTCATTCCGTAATGCTCTCCAATCTGTT-ATGGATGATATCCCAGTTCAC
390 AATAATCCATGTGAGTTCATTCCACAATGCCCTCCAATCTGTTGA-GGATGATATCCCAGTTCAC
5123539 AAGATGCTAGAT
454 AAGATGCTAGAT
5123551 TATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGT
1 TATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGT
* *
5123616 GGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGTTCATTCC
66 GGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCAAGCGAGTTCATTCC
* *
5123681 ACAATGCTTTCCAATCTGTTGTGGATGATATGGAGGATGGCGAAGCATTGGTTCATTTAAATGTA
131 ACAATGCTTTCCAATCTGTTGTGGATGATATGGAGGATGGAGAAGCATTGGTTCATGTAAATGTA
5123746 GCTGATGCTGAAATAATCAATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGATAT
196 GCTGATGCTGAAATAATCAATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGATAT
*
5123811 CCCAGTTCACAAGATGCTAGATTATGGCGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAG
261 CCCAGTTCACAAGATGCTAGATTATGGCGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAG
*
5123876 AACCAATGACTCGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAC
326 AACCAATGACTCGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAA
5123941 ATAATCCATGTGAGTTCATTCCACAATGCCCTCCAATCTGTTGAGGATGATATCCCAGTTCACAA
391 ATAATCCATGTGAGTTCATTCCACAATGCCCTCCAATCTGTTGAGGATGATATCCCAGTTCACAA
5124006 GATGCTAGAT
456 GATGCTAGAT
* *
5124016 TATGGTGATGCAGAAGCATTGGTTGCTGTCCGTGTAAAG
1 TATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAG
5124055 CCAGTGGAGG
Statistics
Matches: 483, Mismatches: 20, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
465 476 0.99
466 7 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (465 bp):
TATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTAATATGGT
GGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCAAGCGAGTTCATTCC
ACAATGCTTTCCAATCTGTTGTGGATGATATGGAGGATGGAGAAGCATTGGTTCATGTAAATGTA
GCTGATGCTGAAATAATCAATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGATAT
CCCAGTTCACAAGATGCTAGATTATGGCGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAG
AACCAATGACTCGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAA
ATAATCCATGTGAGTTCATTCCACAATGCCCTCCAATCTGTTGAGGATGATATCCCAGTTCACAA
GATGCTAGAT
Found at i:5124030 original size:183 final size:183
Alignment explanation
Indices: 5123708--5124054 Score: 570
Period size: 183 Copynumber: 1.9 Consensus size: 183
5123698 GTTGTGGATG
** *
5123708 ATATGGAGGATGGCGAAGCATTGGTTCATTTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
* *
5123773 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCACAATGCCCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5123838 CGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTCGTA
131 CGATGCAGAAGCATTGGTTGATGTCCGTGTAAAGTCAGAACCAATGACTCGTA
* * * *
5123891 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGACATAATCCATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
5123956 TCATTCCACAATGCCCTCCAATCTGTTGA-GGATGATATCCCAGTTCACAAGATGCTAGATTATG
66 TCATTCCACAATGCCCTCCAATCTGTT-ATGGATGATATCCCAGTTCACAAGATGCTAGATTATG
* *
5124020 GTGATGCAGAAGCATTGGTTGCTGTCCGTGTAAAG
130 GCGATGCAGAAGCATTGGTTGATGTCCGTGTAAAG
5124055 CCAGTGGAGG
Statistics
Matches: 151, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
183 150 0.99
184 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.30
Consensus pattern (183 bp):
ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
TCATTCCACAATGCCCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
CGATGCAGAAGCATTGGTTGATGTCCGTGTAAAGTCAGAACCAATGACTCGTA
Found at i:5128590 original size:48 final size:48
Alignment explanation
Indices: 5128519--5128616 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
5128509 TTTTATGTAA
*
5128519 AGACTTTTAATACGTGAAGAAATTAAAATGGATGTTATATCTTGTATG
1 AGACTTTTAATACGTGAAGAAATTAAAACGGATGTTATATCTTGTATG
*
5128567 AGACTTTTAATACGTGAAGAAATTAAAACGGATGTTATTTCTTGTATG
1 AGACTTTTAATACGTGAAGAAATTAAAACGGATGTTATATCTTGTATG
5128615 AG
1 AG
5128617 CATGTTAATT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.37
Consensus pattern (48 bp):
AGACTTTTAATACGTGAAGAAATTAAAACGGATGTTATATCTTGTATG
Found at i:5130924 original size:20 final size:20
Alignment explanation
Indices: 5130899--5130936 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5130889 TTCTGAAAAC
5130899 ATAAAAAACAAATAAATTAT
1 ATAAAAAACAAATAAATTAT
* *
5130919 ATAAAAAATAAATGAATT
1 ATAAAAAACAAATAAATT
5130937 TTGAATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
ATAAAAAACAAATAAATTAT
Found at i:5131399 original size:18 final size:18
Alignment explanation
Indices: 5131372--5131406 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5131362 AATAAATGAA
5131372 ATTAAAAAATTAACATGT
1 ATTAAAAAATTAACATGT
*
5131390 ATTAATAAATTAACATG
1 ATTAAAAAATTAACATG
5131407 CTAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (18 bp):
ATTAAAAAATTAACATGT
Found at i:5134503 original size:21 final size:21
Alignment explanation
Indices: 5134479--5134546 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
5134469 ATTTATGGTA
5134479 AAAAAATTATAATTTTAAAAT
1 AAAAAATTATAATTTTAAAAT
* *
5134500 AAAATATTATAAATATTAAAAATT
1 AAAAAATTAT-AAT-TTTAAAA-T
*
5134524 AAAAAATTA-ATTTTTAAATAT
1 AAAAAATTATAATTTTAAA-AT
5134545 AA
1 AA
5134547 TTATATAAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
21 17 0.45
22 6 0.16
23 6 0.16
24 9 0.24
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
AAAAAATTATAATTTTAAAAT
Found at i:5136943 original size:37 final size:37
Alignment explanation
Indices: 5136893--5136965 Score: 128
Period size: 37 Copynumber: 2.0 Consensus size: 37
5136883 AGTACAGAAT
*
5136893 TTATTTTCTTAAGAGAAGTATAAATAGTGAAAAGATA
1 TTATTTTCTTAAGAGAAGTACAAATAGTGAAAAGATA
*
5136930 TTATTTTCTTAAGAGCAGTACAAATAGTGAAAAGAT
1 TTATTTTCTTAAGAGAAGTACAAATAGTGAAAAGAT
5136966 TCTTGGTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.44, C:0.05, G:0.16, T:0.34
Consensus pattern (37 bp):
TTATTTTCTTAAGAGAAGTACAAATAGTGAAAAGATA
Found at i:5149240 original size:15 final size:14
Alignment explanation
Indices: 5149220--5149254 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
5149210 AAAAACATCT
5149220 TAAATAATCCTCAAA
1 TAAATAAT-CTCAAA
5149235 TAAATAATCTCAAA
1 TAAATAATCTCAAA
5149249 -AAATAA
1 TAAATAA
5149255 ATGCTAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 6 0.30
14 6 0.30
15 8 0.40
ACGTcount: A:0.60, C:0.14, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATAATCTCAAA
Found at i:5149792 original size:64 final size:63
Alignment explanation
Indices: 5149723--5149909 Score: 243
Period size: 64 Copynumber: 2.9 Consensus size: 63
5149713 CGTTTTTTGT
*
5149723 AATAATCCCTTTTAAAAAAATATTAGAGATTATTTAAGGTGTTTTTGATAAAAAAAAAGCTTTA
1 AATAAT-CCTTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAGCTTTA
* * * * * *
5149787 AATAATATCTTTCAAAAAAAT-TGAAGAGTATTATTTAAGATTTTTTTACAAAAAAAAAAAGCTT
1 AATAAT-CCTTTTAAAAAAATAT-TAGAG-ATTATTTAAGATGTTTTT-GATAAAAAAAAAGCTT
5149851 TA
62 TA
5149853 AATAAATCC-TTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA
1 AAT-AATCCTTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA
5149910 TACCTTAAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 11
0.81 0.11 0.09
Matches are distributed among these distances:
63 11 0.11
64 39 0.38
65 30 0.29
66 21 0.20
67 3 0.03
ACGTcount: A:0.49, C:0.05, G:0.09, T:0.36
Consensus pattern (63 bp):
AATAATCCTTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAGCTTTA
Found at i:5149833 original size:65 final size:63
Alignment explanation
Indices: 5149733--5149909 Score: 241
Period size: 65 Copynumber: 2.8 Consensus size: 63
5149723 AATAATCCCT
* *
5149733 TTTAAAAAAATATTAGAGATTATTTAAGGTGTTTTTGATAAAAAAAAAGCTTTAAATAATAT-C
1 TTTAAAAAAATATAAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAGCTTTAAATAA-ATCC
* * *
5149796 TTTCAAAAAAAT-TGAAGAGTATTATTTAAGATTTTTTTACAAAAAAAAAAAGCTTTAAATAAAT
1 TTT-AAAAAAATAT-AAGAG-ATTATTTAAGATGTTTTT-GATAAAAAAAAAGCTTTAAATAAAT
5149860 CC
62 CC
*
5149862 TTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA
1 TTTAAAAAAATATAAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA
5149910 TACCTTAAAA
Statistics
Matches: 99, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
63 14 0.14
64 29 0.29
65 30 0.30
66 26 0.26
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.37
Consensus pattern (63 bp):
TTTAAAAAAATATAAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAGCTTTAAATAAATCC
Found at i:5149931 original size:65 final size:63
Alignment explanation
Indices: 5149732--5149935 Score: 234
Period size: 65 Copynumber: 3.2 Consensus size: 63
5149722 TAATAATCCC
* *
5149732 TTTTAAAAAAATATTAGAGATTATTTAAGGTGTTTTTGATAAAAAAAAAGCTTTAAATAATAT
1 TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAACTTTAAATAATAT
* * * *
5149795 CTTTCAAAAAAAT-TGAAGAGTATTATTTAAGAT-TTTTTTACAAAAAAAAAAAGCTTTAAATAA
1 -TTTTAAAAAAATAT-TAGAG-ATTATTTAAGATGTTTTTGA-TAAAAAAAAAA-CTTTAAATAA
5149858 -AT
61 TAT
* * *
5149860 CCTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAATACCTTAAAAAATAT
1 -TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA-ACTTTAAATAATAT
5149925 TATTTAAAAAA
1 T-TTTAAAAAA
5149936 TGAAAGAATA
Statistics
Matches: 117, Mismatches: 14, Indels: 17
0.79 0.09 0.11
Matches are distributed among these distances:
63 1 0.01
64 50 0.43
65 55 0.47
66 11 0.09
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.37
Consensus pattern (63 bp):
TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAACTTTAAATAATAT
Found at i:5149934 original size:64 final size:62
Alignment explanation
Indices: 5149732--5149936 Score: 225
Period size: 64 Copynumber: 3.2 Consensus size: 62
5149722 TAATAATCCC
* * *
5149732 TTTTAAAAAAATATTAGAGATTATTTAAGGTGTTTTTGATAAAAAAAAAGCTTTAAATAATA
1 TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAACTTTAAAAAATA
* * *
5149794 TCTTTCAAAAAAAT-TGAAGAGTATTATTTAAGAT-TTTTTTACAAAAAAAAAAAGCTTTAAATA
1 T-TTT-AAAAAAATAT-TAGAG-ATTATTTAAGATGTTTTTGA-TAAAAAAAAAA-CTTTAAA-A
*
5149857 AATC
59 AATA
* *
5149861 CTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAATACCTTAAAAAATA
1 TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAA-ACTTTAAAAAATA
*
5149924 TTATTTAAAAAAT
1 TT-TTAAAAAAAT
5149937 GAAAGAATAC
Statistics
Matches: 117, Mismatches: 15, Indels: 20
0.77 0.10 0.13
Matches are distributed among these distances:
62 1 0.01
63 9 0.08
64 54 0.46
65 39 0.33
66 11 0.09
67 3 0.03
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.37
Consensus pattern (62 bp):
TTTTAAAAAAATATTAGAGATTATTTAAGATGTTTTTGATAAAAAAAAAACTTTAAAAAATA
Found at i:5150361 original size:17 final size:17
Alignment explanation
Indices: 5150335--5150386 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
5150325 ATAAAAAAAA
* *
5150335 TTTTAAATATCGCACTT
1 TTTTAGATATCACACTT
*
5150352 TTTTAGATATTACACTT
1 TTTTAGATATCACACTT
5150369 TTTTATGA-ATCACACTT
1 TTTTA-GATATCACACTT
5150386 T
1 T
5150387 CTTTCAGAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 28 0.93
18 2 0.07
ACGTcount: A:0.29, C:0.15, G:0.06, T:0.50
Consensus pattern (17 bp):
TTTTAGATATCACACTT
Found at i:5150673 original size:18 final size:18
Alignment explanation
Indices: 5150628--5150675 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
5150618 ACTTAATTTA
5150628 AAATTATA-TTTATAAAAT
1 AAATTATATTTTA-AAAAT
*
5150646 --ATTATTTTTTAAAAAT
1 AAATTATATTTTAAAAAT
5150662 AAATTATATTTTAA
1 AAATTATATTTTAA
5150676 TTATATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
16 10 0.40
17 4 0.16
18 11 0.44
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AAATTATATTTTAAAAAT
Found at i:5150719 original size:13 final size:13
Alignment explanation
Indices: 5150699--5150732 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
5150689 TAATATTTTT
*
5150699 TATTAAATTAATA
1 TATTAAATTAAAA
*
5150712 TTTTAAATTAAAA
1 TATTAAATTAAAA
5150725 TATTAAAT
1 TATTAAAT
5150733 ATTATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (13 bp):
TATTAAATTAAAA
Found at i:5150721 original size:18 final size:19
Alignment explanation
Indices: 5150683--5150723 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
5150673 TAATTATATA
**
5150683 TAAATATAATATTTTTTAT
1 TAAATATAATATTTTAAAT
5150702 TAAAT-TAATATTTTAAAT
1 TAAATATAATATTTTAAAT
5150720 TAAA
1 TAAA
5150724 ATATTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TAAATATAATATTTTAAAT
Found at i:5153464 original size:11 final size:11
Alignment explanation
Indices: 5153448--5153472 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
5153438 TGACTAATTC
5153448 AGGTTTTAAGT
1 AGGTTTTAAGT
5153459 AGGTTTTAAGT
1 AGGTTTTAAGT
5153470 AGG
1 AGG
5153473 AGTGAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (11 bp):
AGGTTTTAAGT
Found at i:5153709 original size:26 final size:24
Alignment explanation
Indices: 5153644--5153710 Score: 66
Period size: 27 Copynumber: 2.7 Consensus size: 24
5153634 ATCTACAATT
* *
5153644 ATTT-AAATATATTAAAAATTCAA
1 ATTTAAAATATAATAAAAATTAAA
5153667 A-TTAAAATAATATATAAAAATTTTAAA
1 ATTTAAAAT-ATA-ATAAAAA--TTAAA
5153694 ATTTAAAATATAATAAA
1 ATTTAAAATATAATAAA
5153711 TCGAATCGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
22 2 0.06
23 5 0.14
24 3 0.08
25 6 0.17
26 5 0.14
27 8 0.22
28 7 0.19
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.37
Consensus pattern (24 bp):
ATTTAAAATATAATAAAAATTAAA
Found at i:5154099 original size:53 final size:56
Alignment explanation
Indices: 5153990--5154108 Score: 201
Period size: 53 Copynumber: 2.2 Consensus size: 56
5153980 TTTTTTATTC
5153990 GATTT-GGATTAAATTTAGATATTAAATATATATATATATATATTAAGTTTAGATTA
1 GATTTCGGATTAAATTTAGATATT-AATATATATATATATATATTAAGTTTAGATTA
5154046 GATTTCGGATTAAATTTAGATATT-A-A-ATATATATATATATTAAGTTTAGATTA
1 GATTTCGGATTAAATTTAGATATTAATATATATATATATATATTAAGTTTAGATTA
5154099 GATTTCGGAT
1 GATTTCGGAT
5154109 AGAGAAGTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
53 37 0.60
54 1 0.02
55 1 0.02
56 5 0.08
57 18 0.29
ACGTcount: A:0.40, C:0.02, G:0.13, T:0.45
Consensus pattern (56 bp):
GATTTCGGATTAAATTTAGATATTAATATATATATATATATATTAAGTTTAGATTA
Found at i:5157302 original size:129 final size:129
Alignment explanation
Indices: 5157100--5157366 Score: 525
Period size: 129 Copynumber: 2.1 Consensus size: 129
5157090 AACAATTCTT
5157100 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
1 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
*
5157165 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCCTTGGTTGAAGTAAATG
66 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
5157229 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
1 TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
5157294 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
66 TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
5157358 TAGCTGATG
1 TAGCTGATG
5157367 CTGAAATAAT
Statistics
Matches: 137, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
129 137 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (129 bp):
TAGCTGATGAACTACAAGAGGAAGTTTCATGTGAACAAAAAGGCATTTCTATTCCAACAGCCGCC
TATAGCTCTGAGGATCCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATG
Found at i:5157676 original size:99 final size:99
Alignment explanation
Indices: 5157505--5157706 Score: 341
Period size: 99 Copynumber: 2.0 Consensus size: 99
5157495 ATGACTAGTA
* *
5157505 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCAATGTGAGT
*
5157570 TCATTCCACAATGCTCTCCAATCTGTTGTGGATG
66 TCATTCCACAATGCTCTCCAATCTGTTATGGATG
* *
5157604 ATATGGAGGATGGAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCAATGTGAGT
* *
5157669 TCATTCCATAATGCTTTCCAATCTGTTATGGATG
66 TCATTCCACAATGCTCTCCAATCTGTTATGGATG
5157703 ATAT
1 ATAT
5157707 CCCAGTTCAC
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 96 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.33
Consensus pattern (99 bp):
ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCAATGTGAGT
TCATTCCACAATGCTCTCCAATCTGTTATGGATG
Found at i:5157839 original size:282 final size:282
Alignment explanation
Indices: 5157322--5157889 Score: 1019
Period size: 282 Copynumber: 2.0 Consensus size: 282
5157312 ATGACTAGTA
* * *
5157322 ATATGGTGGATGAAGAAGCATTGGTTGAAGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
* *
5157387 TCATTTCATAATGCTTTCCAATCGGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
* *
5157452 TGATGCAGAAGCATTGGTTGATGTCTGTGTTAAGTCAGAACCAATGACTAGTAATATGGTGGATG
131 TGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATG
*
5157517 AAGAAGCATTGGTTGATGTAAATATAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCACAAT
196 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCACAAT
5157582 GCTCTCCAATCTGTTGTGGATG
261 GCTCTCCAATCTGTTGTGGATG
*
5157604 ATATGGAGGATGGAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
*
5157669 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGG
66 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5157734 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATG
131 TGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATG
*
5157799 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAAT
196 AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCACAAT
*
5157864 GCTCTCCAATCTGTTATGGATG
261 GCTCTCCAATCTGTTGTGGATG
5157886 ATAT
1 ATAT
5157890 CCCAGTTCAC
Statistics
Matches: 273, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
282 273 1.00
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.32
Consensus pattern (282 bp):
ATATGGAGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
TGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATG
AAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCACAAT
GCTCTCCAATCTGTTGTGGATG
Found at i:5157931 original size:183 final size:183
Alignment explanation
Indices: 5157604--5158000 Score: 722
Period size: 183 Copynumber: 2.2 Consensus size: 183
5157594 GTTGTGGATG
* *
5157604 ATATGGAGGATGGAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
* *
5157669 TCATTCCATAATGCTTTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGG
66 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5157734 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGTA
131 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
*
5157787 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCCATGTGAGT
1 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
5157852 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5157917 TGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
131 TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
*
5157970 ATATGGTGGATGCAGAAGCATTGGTTGATGT
1 ATATGGTGGATGAAGAAGCATTGGTTGATGT
5158001 CTGTGTAAAG
Statistics
Matches: 206, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
183 206 1.00
ACGTcount: A:0.30, C:0.13, G:0.25, T:0.31
Consensus pattern (183 bp):
ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
TGATGCAAAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTAGTA
Found at i:5158130 original size:141 final size:141
Alignment explanation
Indices: 5157876--5158141 Score: 496
Period size: 141 Copynumber: 1.9 Consensus size: 141
5157866 TCTCCAATCT
*
5157876 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAAAAGCATTGGTTGATGT
*
5157941 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTG
66 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGATGTCTGTG
5158006 TAAAGTCAGAA
131 TAAAGTCAGAA
*
5158017 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAAAAGCATTGGTTGATGT
*
5158082 CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGT
66 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGATGT
5158142 AAATGTAGCT
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
141 121 1.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (141 bp):
GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAAAAGCATTGGTTGATGT
CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGATGTCTGTG
TAAAGTCAGAA
Found at i:5158282 original size:324 final size:324
Alignment explanation
Indices: 5157693--5158537 Score: 1618
Period size: 324 Copynumber: 2.6 Consensus size: 324
5157683 TTTCCAATCT
5157693 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
5157758 CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATG
66 CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATG
5157823 TAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGAT
131 TAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGAT
5157888 ATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTC
196 ATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTC
5157953 AGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAA
261 AGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAA
5158017 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
5158082 CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATG
66 CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATG
5158147 TAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGAT
131 TAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGAT
5158212 ATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTC
196 ATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTC
5158277 AGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAA
261 AGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAA
* *
5158341 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
* *
5158406 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGACGTAAATG
66 CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATG
* * * *
5158471 TAGCTGATGCTGAAATAATCCAAGTGAGTTCATTCCACAATGCTTTCCAATCTGTTGTGGATGAT
131 TAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGAT
5158536 AT
196 AT
5158538 GGAGGATGGC
Statistics
Matches: 513, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
324 513 1.00
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (324 bp):
GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTGTGGTGATGCAAAAGCATTGGTTGATGT
CTGTGTAAAGTCAGAACCAATGACTGGTAATATGGTGGATGAAGAAGCATTGGTTGATGTAAATG
TAGCTGATGCTGAAATAATCCATGTGAGTTCATTCCATAATGCTCTCCAATCTGTTATGGATGAT
ATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTC
AGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAA
Found at i:5158454 original size:141 final size:141
Alignment explanation
Indices: 5158200--5158462 Score: 517
Period size: 141 Copynumber: 1.9 Consensus size: 141
5158190 TCTCCAATCT
5158200 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
*
5158265 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGCAGAAGCATTGGTTGATGTCTGTG
66 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGATGTCTGTG
5158330 TAAAGTCAGAA
131 TAAAGTCAGAA
5158341 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
1 GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
5158406 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGA
66 CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGA
5158463 CGTAAATGTA
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
141 121 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.30
Consensus pattern (141 bp):
GTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGGTGATGCAGAAGCATTGGTTGATGT
CTGTGTAAAGTCAGAACCAATGACTAGTAATATGGTGGATGAAGAAGCATTGGTTGATGTCTGTG
TAAAGTCAGAA
Found at i:5158606 original size:99 final size:99
Alignment explanation
Indices: 5158435--5158636 Score: 307
Period size: 99 Copynumber: 2.0 Consensus size: 99
5158425 ATGACTAGTA
* *
5158435 ATATGGTGGATGAAGAAGCATTGGTTGACGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCACGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
* *
5158500 TCATTCCACAATGCTTTCCAATCTGTTGTGGATG
66 TCATTCCACAATGCTCTCCAATCTGTTATGGATG
** **
5158534 ATATGGAGGATGGCGAAGCATTGGTTCATTTAAATGTAGCTGATGCTGAAATAAT-CAATGTGAG
1 ATATGGAGGATGAAGAAGCATTGGTTCACGTAAATGTAGCTGATGCTGAAATAATCCAA-GTGAG
*
5158598 TTCATTCCATAATGCTCTCCAATCTGTTATGGATG
65 TTCATTCCACAATGCTCTCCAATCTGTTATGGATG
5158633 ATAT
1 ATAT
5158637 CCCAGTTCAC
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 3 0.03
99 90 0.97
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.33
Consensus pattern (99 bp):
ATATGGAGGATGAAGAAGCATTGGTTCACGTAAATGTAGCTGATGCTGAAATAATCCAAGTGAGT
TCATTCCACAATGCTCTCCAATCTGTTATGGATG
Found at i:5158856 original size:183 final size:183
Alignment explanation
Indices: 5158534--5158880 Score: 570
Period size: 183 Copynumber: 1.9 Consensus size: 183
5158524 GTTGTGGATG
** *
5158534 ATATGGAGGATGGCGAAGCATTGGTTCATTTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
* *
5158599 TCATTCCATAATGCTCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
66 TCATTCCACAATGCCCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
*
5158664 CGATGCAGAAGCATTGGTTGATGTCTGTGTAAAGTCAGAACCAATGACTGGAA
131 CGATGCAGAAGCATTGGTTGATGTCCGTGTAAAGTCAGAACCAATGACTGGAA
* * * *
5158717 ATATGGTGGATGAAGAAGCATTGGTTGATGTAAATGTAGCTGATGCTGACATAATCCATGTGAGT
1 ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
5158782 TCATTCCACAATGCCCTCCAATCTGTTGA-GGATGATATCCCAGTTCACAAGATGCTAGATTATG
66 TCATTCCACAATGCCCTCCAATCTGTT-ATGGATGATATCCCAGTTCACAAGATGCTAGATTATG
* *
5158846 GTGATGCAGAAGCATTGGTTGCTGTCCGTGTAAAG
130 GCGATGCAGAAGCATTGGTTGATGTCCGTGTAAAG
5158881 CCAGTGGAGG
Statistics
Matches: 151, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
183 150 0.99
184 1 0.01
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (183 bp):
ATATGGAGGATGAAGAAGCATTGGTTCATGTAAATGTAGCTGATGCTGAAATAATCAATGTGAGT
TCATTCCACAATGCCCTCCAATCTGTTATGGATGATATCCCAGTTCACAAGATGCTAGATTATGG
CGATGCAGAAGCATTGGTTGATGTCCGTGTAAAGTCAGAACCAATGACTGGAA
Found at i:5163429 original size:48 final size:48
Alignment explanation
Indices: 5163358--5163455 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
5163348 CTTTTATGTA
*
5163358 AGACTTTTAATACATGAAGAAATTAAAATGGATGTTATATCTTGTATG
1 AGACTTTTAATACATGAAGAAATTAAAACGGATGTTATATCTTGTATG
5163406 AGACTTTTAATACATGAAGAAATTAAAACGGATGTTATATCTTGTATG
1 AGACTTTTAATACATGAAGAAATTAAAACGGATGTTATATCTTGTATG
5163454 AG
1 AG
5163456 CATGTTAATT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.40, C:0.07, G:0.17, T:0.36
Consensus pattern (48 bp):
AGACTTTTAATACATGAAGAAATTAAAACGGATGTTATATCTTGTATG
Found at i:5165001 original size:16 final size:17
Alignment explanation
Indices: 5164976--5165010 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5164966 TTTATATTTT
5164976 AATTTGTA-TTCAAATA
1 AATTTGTATTTCAAATA
*
5164992 AATTTTTATTTCAAATA
1 AATTTGTATTTCAAATA
5165009 AA
1 AA
5165011 ATAATAGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.46, C:0.06, G:0.03, T:0.46
Consensus pattern (17 bp):
AATTTGTATTTCAAATA
Found at i:5165150 original size:29 final size:28
Alignment explanation
Indices: 5165106--5165177 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 28
5165096 GTGTAGATTA
* *
5165106 AAAATTAAAAATTAAAAATTTATTTAAAT
1 AAAA-TAAAAATTAAAAACTTACTTAAAT
* *
5165135 AAAATAAAAATATAAAGACTTACTTATAT
1 AAAATAAAAAT-TAAAAACTTACTTAAAT
5165164 AAAATTATAAAATT
1 AAAA-TA-AAAATT
5165178 TAAGAGGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
28 7 0.19
29 21 0.58
30 3 0.08
31 5 0.14
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (28 bp):
AAAATAAAAATTAAAAACTTACTTAAAT
Found at i:5165495 original size:12 final size:12
Alignment explanation
Indices: 5165478--5165502 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
5165468 TATTAATTAA
5165478 TTAAATTTAATT
1 TTAAATTTAATT
5165490 TTAAATTTAATT
1 TTAAATTTAATT
5165502 T
1 T
5165503 AAGTATACGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTAAATTTAATT
Found at i:5165828 original size:20 final size:20
Alignment explanation
Indices: 5165803--5165840 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5165793 TTCTGAAAAC
5165803 ATAAAAAACAAATAAATTAT
1 ATAAAAAACAAATAAATTAT
* *
5165823 ATAAAAAATAAATGAATT
1 ATAAAAAACAAATAAATT
5165841 TTGAATTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.26
Consensus pattern (20 bp):
ATAAAAAACAAATAAATTAT
Found at i:5166305 original size:18 final size:18
Alignment explanation
Indices: 5166278--5166312 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5166268 AATAAATGAA
5166278 ATTAAAAAATTAACATGT
1 ATTAAAAAATTAACATGT
*
5166296 ATTAATAAATTAACATG
1 ATTAAAAAATTAACATG
5166313 CTAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (18 bp):
ATTAAAAAATTAACATGT
Found at i:5169432 original size:22 final size:22
Alignment explanation
Indices: 5169401--5169467 Score: 64
Period size: 23 Copynumber: 3.0 Consensus size: 22
5169391 TTTATGGTAA
* *
5169401 AAAAAAATTACAATTTTAAAAT
1 AAAAATATTATAATTTTAAAAT
*
5169423 AAAAATATTATAACTATTAAAAT
1 AAAAATATTATAA-TTTTAAAAT
** *
5169446 TTAAATATT-TAATTTTTAAAT
1 AAAAATATTATAATTTTAAAAT
5169467 A
1 A
5169468 TAATTATATA
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
21 7 0.19
22 14 0.39
23 15 0.42
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (22 bp):
AAAAATATTATAATTTTAAAAT
Found at i:5169618 original size:36 final size:36
Alignment explanation
Indices: 5169566--5169638 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
5169556 TTCTCAAGTC
5169566 ATTTCCTTTATATAATAAAGCATGAGAAATGTTTTA
1 ATTTCCTTTATATAATAAAGCATGAGAAATGTTTTA
*
5169602 ATTTCCTTTATGTAATAAAGCATGAGAAATGTTTTA
1 ATTTCCTTTATATAATAAAGCATGAGAAATGTTTTA
5169638 A
1 A
5169639 CTTTTAATCA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.41
Consensus pattern (36 bp):
ATTTCCTTTATATAATAAAGCATGAGAAATGTTTTA
Found at i:5180957 original size:2 final size:2
Alignment explanation
Indices: 5180945--5180977 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
5180935 TATTGCATGA
5180945 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5180978 CTATCAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5182006 original size:11 final size:11
Alignment explanation
Indices: 5181977--5182007 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
5181967 CAACAAGATA
*
5181977 AACAGAACGGG
1 AACAGAATGGG
5181988 AACAGAATGGG
1 AACAGAATGGG
5181999 AACAGAATG
1 AACAGAATG
5182008 TAACCAAGGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.48, C:0.13, G:0.32, T:0.06
Consensus pattern (11 bp):
AACAGAATGGG
Found at i:5182908 original size:20 final size:20
Alignment explanation
Indices: 5182880--5182917 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
5182870 ACAATACCAC
*
5182880 TGAGTGAATAGGAGAATATT
1 TGAGCGAATAGGAGAATATT
*
5182900 TGAGCGAATTGGAGAATA
1 TGAGCGAATAGGAGAATA
5182918 GTTAAGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.32, T:0.26
Consensus pattern (20 bp):
TGAGCGAATAGGAGAATATT
Found at i:5183361 original size:91 final size:92
Alignment explanation
Indices: 5183261--5183442 Score: 339
Period size: 91 Copynumber: 2.0 Consensus size: 92
5183251 ACCAACATAA
*
5183261 AAATATCAGATATATTTAATGGACACACTCTTAAATTATAAATGAAATACAAAGAAG-AAAACAT
1 AAATATCAGATATATTTAATGGACACACACTTAAATTATAAATGAAATACAAAGAAGAAAAACAT
5183325 TGTTGAAAATCTACTGCAACGGTATCT
66 TGTTGAAAATCTACTGCAACGGTATCT
*
5183352 AAATATCAGATATATTTAATGGACACACACTTAAATTATAGATGAAATACAAAGAAGAAAAACAT
1 AAATATCAGATATATTTAATGGACACACACTTAAATTATAAATGAAATACAAAGAAGAAAAACAT
5183417 TGTTGAAAATCTACTGCAACGGTATC
66 TGTTGAAAATCTACTGCAACGGTATC
5183443 ATAGTTTTCT
Statistics
Matches: 88, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
91 55 0.62
92 33 0.38
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (92 bp):
AAATATCAGATATATTTAATGGACACACACTTAAATTATAAATGAAATACAAAGAAGAAAAACAT
TGTTGAAAATCTACTGCAACGGTATCT
Found at i:5190280 original size:4 final size:4
Alignment explanation
Indices: 5190271--5190296 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
5190261 CTCAAGAATA
5190271 ACCG ACCG ACCG ACCG ACCG ACCG AC
1 ACCG ACCG ACCG ACCG ACCG ACCG AC
5190297 TAACTAAGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.50, G:0.23, T:0.00
Consensus pattern (4 bp):
ACCG
Found at i:5196065 original size:11 final size:11
Alignment explanation
Indices: 5196049--5196090 Score: 57
Period size: 11 Copynumber: 3.6 Consensus size: 11
5196039 ATCATCATAC
5196049 AATATAAATAT
1 AATATAAATAT
*
5196060 AATATAAAAATAA
1 AATAT--AAATAT
5196073 AATATAAATAT
1 AATATAAATAT
5196084 AATATAA
1 AATATAA
5196091 TTTAAAATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 17 0.63
13 10 0.37
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (11 bp):
AATATAAATAT
Found at i:5196194 original size:12 final size:12
Alignment explanation
Indices: 5196157--5196200 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
5196147 TATTTTTATA
5196157 TTAATATAAATT
1 TTAATATAAATT
*
5196169 ATAATATATAATT
1 TTAATATA-AATT
*
5196182 TTCATATAAATT
1 TTAATATAAATT
*
5196194 TTTATAT
1 TTAATAT
5196201 TTTATATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
12 17 0.63
13 10 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (12 bp):
TTAATATAAATT
Found at i:5201100 original size:32 final size:32
Alignment explanation
Indices: 5201049--5201112 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
5201039 GTTCGAGAGA
*
5201049 TAGAAACCGCGAGCCTGTGAGTATAGGTAACT
1 TAGAAACCGCGAGCCTGTGAGTATAGGAAACT
* * *
5201081 TAGAAACCGTGCGCTTGTGAGTATAGGAAACT
1 TAGAAACCGCGAGCCTGTGAGTATAGGAAACT
5201113 ATGTTATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (32 bp):
TAGAAACCGCGAGCCTGTGAGTATAGGAAACT
Found at i:5211350 original size:16 final size:16
Alignment explanation
Indices: 5211329--5211359 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5211319 CAAAGACTCT
5211329 TCTTTTCTTTTTCTTC
1 TCTTTTCTTTTTCTTC
*
5211345 TCTTTTTTTTTTCTT
1 TCTTTTCTTTTTCTT
5211360 TGTACTTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TCTTTTCTTTTTCTTC
Found at i:5211450 original size:26 final size:26
Alignment explanation
Indices: 5211400--5211450 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5211390 TCCTTTTTCA
* *
5211400 CCAATTTTCAATTTTTTTTATAAATG
1 CCAATCTTCAATTTTTTTTAGAAATG
5211426 CCAATCTTCAATTTTCTTTT-GAAAT
1 CCAATCTTCAATTTT-TTTTAGAAAT
5211451 AATTGTTTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.29, C:0.16, G:0.04, T:0.51
Consensus pattern (26 bp):
CCAATCTTCAATTTTTTTTAGAAATG
Found at i:5212183 original size:17 final size:19
Alignment explanation
Indices: 5212147--5212183 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
5212137 ATAATAAAAA
*
5212147 TATATAAATTTTAATATTT
1 TATATAAATTTAAATATTT
5212166 TATAT-AATTTAAAT-TTT
1 TATATAAATTTAAATATTT
5212183 T
1 T
5212184 TTCTTTTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATATAAATTTAAATATTT
Found at i:5214048 original size:15 final size:13
Alignment explanation
Indices: 5214022--5214047 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5214012 ATATTTTTTT
5214022 ATTTTTTAATATA
1 ATTTTTTAATATA
5214035 ATTTTTTAATATA
1 ATTTTTTAATATA
5214048 TTTAAATAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTTTTTAATATA
Found at i:5214050 original size:12 final size:12
Alignment explanation
Indices: 5214021--5214050 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
5214011 TATATTTTTT
5214021 TATTTTTTAATA
1 TATTTTTTAATA
5214033 TAATTTTTTAATA
1 T-ATTTTTTAATA
5214046 TATTT
1 TATTT
5214051 AAATAGATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.29
13 12 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (12 bp):
TATTTTTTAATA
Found at i:5214110 original size:17 final size:17
Alignment explanation
Indices: 5214089--5214124 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5214079 TTTTATTTTA
*
5214089 AAAAAAATTAAAACATAT
1 AAAAAAA-TAAAAAATAT
5214107 AAAAAAATAAAAAATAT
1 AAAAAAATAAAAAATAT
5214124 A
1 A
5214125 TAATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (17 bp):
AAAAAAATAAAAAATAT
Found at i:5214127 original size:19 final size:18
Alignment explanation
Indices: 5214089--5214124 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
5214079 TTTTATTTTA
*
5214089 AAAAAAATTAAAACATAT
1 AAAAAAATAAAAACATAT
5214107 AAAAAAATAAAAA-ATAT
1 AAAAAAATAAAAACATAT
5214124 A
1 A
5214125 TAATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (18 bp):
AAAAAAATAAAAACATAT
Found at i:5217568 original size:23 final size:24
Alignment explanation
Indices: 5217534--5217586 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 24
5217524 ATTTCTATTT
5217534 CAAAAAAA--TTG-AAA-ATAAAA
1 CAAAAAAACTTTGAAAACATAAAA
5217554 CAACAAAAACTTTGAAAACATAAAA
1 CAA-AAAAACTTTGAAAACATAAAA
5217579 CAAAAAAA
1 CAAAAAAA
5217587 TTGGCAAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
20 3 0.11
21 5 0.18
23 3 0.11
24 8 0.29
25 9 0.32
ACGTcount: A:0.72, C:0.11, G:0.04, T:0.13
Consensus pattern (24 bp):
CAAAAAAACTTTGAAAACATAAAA
Found at i:5218526 original size:110 final size:110
Alignment explanation
Indices: 5218333--5218539 Score: 342
Period size: 110 Copynumber: 1.9 Consensus size: 110
5218323 ATAATTTCAG
* *
5218333 TTAACAACTTAGTGATGTGGTTGGCAAAAGTGGAAGACCTGCAGTCTACACCGAAGTGGGCATTT
1 TTAACAACTTAGTGATGTGGTTGGAAAAAGTGGAAGACCTGCAGTCTACACCAAAGTGGGCATTT
*
5218398 TCCTCTCAATGGAGAGAGAGAGAGGGAGAGAGAGAAGTTAAAAGC
66 TCCTCTCAATGGAGAGAGAGAGAGAGAGAGAGAGAAGTTAAAAGC
* * ** *
5218443 TTAACAATTTAGTGATGTGGTTGGAAAAAGTGGAAGGCCTGTGGTCTACACCAAAGTGGGTATTT
1 TTAACAACTTAGTGATGTGGTTGGAAAAAGTGGAAGACCTGCAGTCTACACCAAAGTGGGCATTT
5218508 TCCTCTCAATGGAGAGAGAGAGAGAGAGAGAG
66 TCCTCTCAATGGAGAGAGAGAGAGAGAGAGAG
5218540 GTTAAAATCT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
110 89 1.00
ACGTcount: A:0.33, C:0.13, G:0.31, T:0.23
Consensus pattern (110 bp):
TTAACAACTTAGTGATGTGGTTGGAAAAAGTGGAAGACCTGCAGTCTACACCAAAGTGGGCATTT
TCCTCTCAATGGAGAGAGAGAGAGAGAGAGAGAGAAGTTAAAAGC
Found at i:5224514 original size:107 final size:107
Alignment explanation
Indices: 5224361--5224574 Score: 401
Period size: 107 Copynumber: 2.0 Consensus size: 107
5224351 CTACTTACTT
* *
5224361 GAATGAATAGAAATCAACAGCAAACCGGGTAAGTTCAACTAGATCGCTTGTGGTAAAATATTCAT
1 GAATGAATAGAAATCAACAGCAAACCGGCTAAGTTCAACTAGATCGCTTGTAGTAAAATATTCAT
5224426 ATAGGGGAGTTGGTGAAACAATAATGCAAAATAGGGGAGCCA
66 ATAGGGGAGTTGGTGAAACAATAATGCAAAATAGGGGAGCCA
5224468 GAATGAATAGAAATCAACAGCAAACCGGCTAAGTTCAACTAGATCGCTTGTAGTAAAATATTCAT
1 GAATGAATAGAAATCAACAGCAAACCGGCTAAGTTCAACTAGATCGCTTGTAGTAAAATATTCAT
*
5224533 ATAGGGGAGTTGGTGCAACAATAATGCAAAATAGGGGAGCCA
66 ATAGGGGAGTTGGTGAAACAATAATGCAAAATAGGGGAGCCA
5224575 AAGTAAGTAA
Statistics
Matches: 104, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
107 104 1.00
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.21
Consensus pattern (107 bp):
GAATGAATAGAAATCAACAGCAAACCGGCTAAGTTCAACTAGATCGCTTGTAGTAAAATATTCAT
ATAGGGGAGTTGGTGAAACAATAATGCAAAATAGGGGAGCCA
Found at i:5233571 original size:371 final size:370
Alignment explanation
Indices: 5232888--5233631 Score: 1364
Period size: 371 Copynumber: 2.0 Consensus size: 370
5232878 CATGTGCATG
*
5232888 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCTTTCCG
1 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
* *
5232953 GCGTCCCAGATCAGCCTTCTCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
66 GCGTCCCAGATCAGCCTACTCGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
* *
5233018 CTGGCCTCACTGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGAAGGTGTGAACCCTTTTAT
131 CTGGCCTCACTGTATTGTCCGACAAAAGGCGCCTCACAAGGCGGAGAAGGTGTGAACCCTTTTAT
*
5233083 ACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTAGGTCCGTGACATT
196 ACCCCAGTGACCTTCCTATTATGTTCGATGTAGGATTCAGGACTCCCCCTTAGGTCCGTGACATT
*
5233148 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCTGGCCACCCTGCCTACCTCCCTCAAG
261 CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCAAG
* *
5233213 GTGCTTGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCACT
326 GCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACC-CT
5233259 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
1 TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
5233324 GCGTCCCAGATCAGCCTGAC-CGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
66 GCGTCCCAGATCAGCCT-ACTCGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
*
5233388 CCTGGCCTCACTGTATTGTCCGACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
130 CCTGGCCTCACTGTATTGTCCGACAAAAGGCGCCTCACAAGGCGGAGAAGGTGTGAACCCTTTTA
5233453 TACCCCAGTGACCTTCCTATTATGTTCGATGTAGGATTCAGGACTCCCCCTTAGGTCCGTGACAT
195 TACCCCAGTGACCTTCCTATTATGTTCGATGTAGGATTCAGGACTCCCCCTTAGGTCCGTGACAT
*
5233518 TCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCGA
260 TCTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCAA
5233583 GGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCCT
325 GGCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCCT
5233629 TGT
1 TGT
5233632 GAGGCGCCTC
Statistics
Matches: 361, Mismatches: 11, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
370 5 0.01
371 355 0.98
372 1 0.00
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (370 bp):
TGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTCCG
GCGTCCCAGATCAGCCTACTCGCCACAGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCCC
CTGGCCTCACTGTATTGTCCGACAAAAGGCGCCTCACAAGGCGGAGAAGGTGTGAACCCTTTTAT
ACCCCAGTGACCTTCCTATTATGTTCGATGTAGGATTCAGGACTCCCCCTTAGGTCCGTGACATT
CTCCCGCACCCAACCTCGTGACGCCCTCGTCACGGAGGCCGGCCACCCTGCCTACCTCCCTCAAG
GCGCTCGGCGTGGATCGAACGGTTTAGGGCTGGCTCTGATACCCT
Found at i:5234412 original size:370 final size:371
Alignment explanation
Indices: 5233638--5234703 Score: 1824
Period size: 370 Copynumber: 2.9 Consensus size: 371
5233628 TTGTGAGGCG
5233638 CCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGA
1 CCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGA
*
5233703 GAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAAGAAGGTCACTGGGG
66 GAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGG
5233768 TATAAAAGGGTTCACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCA
131 TATAAAAGGGTTCACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCA
* *
5233833 GGGGGGCTAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGAGAAGGCTGATCTGGGATG
196 GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGAGAAGGCTGATCTGGGACG
*
5233898 CCGGAAAGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGAC
261 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGAC
* *
5233963 AAGTGGTATCAGAGCCAGCCCTAAACCGTTCGATCCACGCCGAGCA
326 AAGTGATATCAGAGCCAGCCCTAAACCGTTCAATCCACGCCGAGCA
* *
5234009 CCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGAGCGTCATGAGGTTGGGTGCGGGA
1 CCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGA
5234074 GAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGG
66 GAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGG
*
5234139 TATAAAAGGGTTCACACCATCTCCGCCTTGTGAGACGCCTTTTGTAGGACAAAACCGTGAGG-CA
131 TATAAAAGGGTTCACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCA
* *
5234203 AGGGGACCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGAGAAGGCTGATCTGGGACG
196 GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGAGAAGGCTGATCTGGGACG
*
5234268 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACTCGTGAC
261 CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGAC
* *
5234333 AAGTGATATCAGAGCCAGCCCTATACTGTTCAATCCACGCCGAGCA
326 AAGTGATATCAGAGCCAGCCCTAAACCGTTCAATCCACGCCGAGCA
* * * *
5234379 CCTCAAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGA
1 CCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGA
* *
5234444 AAATGTCACGGACCTAAGGGGGAGTCCTGAATCTCACATCGAACATAATAGGAAGGTC-CTTGGG
66 GAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCAC-TGGG
* *
5234508 GTATAAAAGGATTCACACCATCTCCGTCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCC
130 GTATAAAAGGGTTCACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCC
* *
5234573 AGGGGGGCCAGAGCGGACAATACC-CACAAGGGTGTGAACTGTGG-G-GTCAGGCTGATCTGGGG
195 AGGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGAG-AAGGCTGATCT-GGG
5234635 ACGCACGGAAGGG-GAATGCCCGGGTCCCGGAGCCGCGCGGG-TCGGAGCTTGAGT-TCGACCCG
258 ACGC-CGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCG
5234697 TGACAAG
322 TGACAAG
5234704 GAATGTCACG
Statistics
Matches: 660, Mismatches: 30, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
368 15 0.02
369 25 0.04
370 401 0.61
371 219 0.33
ACGTcount: A:0.23, C:0.24, G:0.35, T:0.17
Consensus pattern (371 bp):
CCTCGAGGGAGGTAGGCAGGGTGGCCGGCCTCCGTGACGAGGGCGTCACGAGGTTGGGTGCGGGA
GAATGTCACGGACCTAAGGGGGAGTCCTGAATCCCACATCGAACATAATAGGAAGGTCACTGGGG
TATAAAAGGGTTCACACCATCTCCGCCTTGTGAGGCGCCTTTTGTAGGACAAAACCGTGAGGCCA
GGGGGGCCAGAGCGGACAATACCTCACAAGGGTGTGAACCGTGGCGAGAAGGCTGATCTGGGACG
CCGGAAGGGTGAATGCCCGGGTCCCGGAGCCGCGCGGGTTCGGAGCTTGAGTCTCGACCCGTGAC
AAGTGATATCAGAGCCAGCCCTAAACCGTTCAATCCACGCCGAGCA
Found at i:5241180 original size:7 final size:7
Alignment explanation
Indices: 5241168--5241198 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
5241158 ATCAAATATT
5241168 AGAGGAG
1 AGAGGAG
5241175 AGAGGAG
1 AGAGGAG
5241182 AGAGAGAG
1 AGAG-GAG
5241190 AGAGGAG
1 AGAGGAG
5241197 AG
1 AG
5241199 CAGACCGTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (7 bp):
AGAGGAG
Found at i:5241190 original size:15 final size:14
Alignment explanation
Indices: 5241168--5241198 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
5241158 ATCAAATATT
5241168 AGAGGAGAGAGGAG
1 AGAGGAGAGAGGAG
5241182 AGAGAGAGAGAGGAG
1 AGAG-GAGAGAGGAG
5241197 AG
1 AG
5241199 CAGACCGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (14 bp):
AGAGGAGAGAGGAG
Found at i:5244913 original size:27 final size:27
Alignment explanation
Indices: 5244883--5244934 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
5244873 TTCTGTTTTT
*
5244883 TAATGTTTTCTCTTAATAATTTAAAAA
1 TAATGTTTTCTCTTAATAATATAAAAA
* *
5244910 TAATTTTTTCTCTTATTAATATAAA
1 TAATGTTTTCTCTTAATAATATAAA
5244935 GAAGATATTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (27 bp):
TAATGTTTTCTCTTAATAATATAAAAA
Found at i:5248652 original size:2 final size:2
Alignment explanation
Indices: 5248645--5248678 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
5248635 TTTGAACATT
*
5248645 TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
5248679 AGATAAATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.47, G:0.03, T:0.50
Consensus pattern (2 bp):
TC
Found at i:5254863 original size:6 final size:7
Alignment explanation
Indices: 5254842--5254875 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
5254832 GAGAGTAACA
5254842 TGCA-GT
1 TGCATGT
5254848 TGCATGT
1 TGCATGT
5254855 TGCAT-T
1 TGCATGT
5254861 TGCATGT
1 TGCATGT
5254868 TGCATGT
1 TGCATGT
5254875 T
1 T
5254876 CTTGGATAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 10 0.38
7 16 0.62
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.44
Consensus pattern (7 bp):
TGCATGT
Found at i:5254863 original size:13 final size:13
Alignment explanation
Indices: 5254842--5254872 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
5254832 GAGAGTAACA
*
5254842 TGCAGTTGCATGT
1 TGCATTTGCATGT
5254855 TGCATTTGCATGT
1 TGCATTTGCATGT
5254868 TGCAT
1 TGCAT
5254873 GTTCTTGGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.16, C:0.16, G:0.26, T:0.42
Consensus pattern (13 bp):
TGCATTTGCATGT
Found at i:5256147 original size:10 final size:10
Alignment explanation
Indices: 5256132--5256158 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
5256122 TCACAAATTC
5256132 AATTCAATAA
1 AATTCAATAA
5256142 AATTCAATAA
1 AATTCAATAA
5256152 AATTCAA
1 AATTCAA
5256159 ATTCTAGTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (10 bp):
AATTCAATAA
Found at i:5264938 original size:759 final size:762
Alignment explanation
Indices: 5262449--5265503 Score: 5618
Period size: 759 Copynumber: 4.0 Consensus size: 762
5262439 TTTTCTTGGG
*
5262449 ATCAATGGGGCCTGTTTGTTTCT-T-TTTTTTTTAATCCAATTTTTTTTAGTTATCTTCCTTTTT
1 ATCAATGGGGCCTGTTTGTTTCTCTATTTTTTTT-TTCC-A--TTTTTT--TTATCTTCCTTTTT
5262512 AATTTGGTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATT
60 AATTTGGTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATT
*
5262577 CTTGAAAATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACATATAAAAAGCAGCCTGG
125 CTTGAAAATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACGTATAAAAAGCAGCCTGG
*
5262642 AACTATTTTTTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCATTGCCTCCACTCCTCT
190 AACTA---TTTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCT
5262707 CCCAAATAGAAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCAT
252 CCCAAATAGAAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCAT
*
5262772 ATTCATAAATGGAAGCTAGTGAAAAAGCTTGTAGAGGTCAATTTGCTGCCTCTTTTTTCTCTCGC
317 ATTCATAAATGGAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGC
5262837 TTGAATTTTACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTTACTGTATA-
382 TTGAATTTTACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCG-TTACTGTATAT
5262901 TTTTCTTCCAAATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTTCCTTTTCCTT
446 TTTTCTTCCAAATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTT-CTTTT-CTT
*
5262966 TTTTTGAACTCTGAATTGAAAAAAAATTTTAACCTGTAACTACCAATCAAACTTCGTTGCTTTCA
509 TTTTTGAACTCTGAATTGAAAAAAAATTTTAACCCGTAACTACCAATCAAACTTCGTTGC-TTCA
*
5263031 AAAGACCAACACAAGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAG
573 AAAGACCAACTCAAGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAG
5263096 TTCCTCACAGCAA-TTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATACGTTGCTTTCATGAT
638 TTCCTCACAGCAATTTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATACGTTGCTTTCATGAT
5263160 TTTTAGAAGGATGCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
703 TTTTAGAAGGATGCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
5263220 ATCAAT-GGGCCTGTTTGTTTCTCTA-TTTTTTTTTCCA-TTTTTTTATCTTCCTTTTTAATTTG
1 ATCAATGGGGCCTGTTTGTTTCTCTATTTTTTTTTTCCATTTTTTTTATCTTCCTTTTTAATTTG
5263282 GTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTGAA
66 GTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTGAA
*
5263347 AATTGTTTCATAAGTTCTATTTAATGTGTTCATTGTTTAACGTATAAAAAGCAGCCTGGAACTAT
131 AATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACGTATAAAAAGCAGCCTGGAACTAT
5263412 TTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCTCCCAAATAG
196 TTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCTCCCAAATAG
5263477 AAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCATATTCATAAA
261 AAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCATATTCATAAA
*
5263542 TGGAAGCTAGCGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATTTT
326 TGGAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATTTT
5263607 ACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATATTTTTCTTCCA
391 ACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATATTTTTCTTCCA
*
5263672 AATGAATACATTTTCCTGTGATGCATATAGAATCAAATCTATTTTTCTTTTCTTTTTTTGAACTC
456 AATGAATACATTTTCCTATGATGCATATAGAATCAAATCTA-TTTTCTTTTCTTTTTTTGAACTC
5263737 TGAATTGAAAAAAAAATTTTAACCCGTTAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAAC
520 TGAATTG-AAAAAAAATTTTAACCCG-TAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAAC
5263802 TCAAGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCCTCACAG
583 TCAAGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCCTCACAG
*
5263867 CAATTTTATAGAGGTGTAGGGTGTAAAAGCTATTATTATACGTTGCTTTCATGATTTTTAGAAGG
648 CAATTTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATACGTTGCTTTCATGATTTTTAGAAGG
**
5263932 ATGCTTGTTTTGTCATATTTTTTATTTCTTTAGTTTTAGATTTTAGGTCT
713 ATGCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
*
5263982 ATCAATGGGGCCTGTTTGTTTCTCTATTTTTTTTTTTCCATTTTTTTTATCTTCCCTTTTAATTT
1 ATCAATGGGGCCTGTTTGTTTCTCTA-TTTTTTTTTTCCATTTTTTTTATCTTCCTTTTTAATTT
5264047 GGTACATGTTTAAGTTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTG
65 GGTACATGTTTAA-TTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTG
5264112 AAAATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTT-A-GTATAAAAAGCAGCCTGGAA-T
129 AAAATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACGTATAAAAAGCAGCCTGGAACT
*
5264174 A-TTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCGCTGCCTCCACTCCTCTCCCAAAT
194 ATTTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCTCCCAAAT
* *
5264238 AGAAGCCAATCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCATATTCCTA
259 AGAAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCATATTCATA
*
5264303 AATGAAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATT
324 AATGGAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATT
5264368 TTACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATA-TTTTCTTC
389 TTACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATATTTTTCTTC
5264432 CAAATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTTCTTTTCTTTTTTTGAACT
454 CAAATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTTCTTTTCTTTTTTTGAACT
*
5264497 CTGAATTGAAAAAAAATTTTAACCTGTAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAACT
519 CTGAATTGAAAAAAAATTTTAACCCGTAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAACT
5264562 CAAGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCCTCACAGC
584 CAAGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCCTCACAGC
*
5264627 AATTTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATATGTTGCTTTCATGATTTTTAGAAGGA
649 AATTTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATACGTTGCTTTCATGATTTTTAGAAGGA
5264692 TGCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
714 TGCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
5264741 ATCAATGGGGCCTGTTTGTTTCTCTATTTTTTTTTTCCA-TTTTTTTATCTTCCTTTTTAATTTG
1 ATCAATGGGGCCTGTTTGTTTCTCTATTTTTTTTTTCCATTTTTTTTATCTTCCTTTTTAATTTG
5264805 GTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTGAA
66 GTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTGAA
5264870 AATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACGTATAAAAAGCAGCCTGGAACTA-
131 AATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACGTATAAAAAGCAGCCTGGAACTAT
*
5264934 TTTTTTTCTTGTTATTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCTCCCAAATAG
196 TTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCTCCCAAATAG
*
5264999 AAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCCACTCAACACTAGCTCATATTCATAAA
261 AAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCATATTCATAAA
5265064 TGGAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATTTT
326 TGGAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATTTT
5265129 ACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATATTTTTCTTCCA
391 ACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATATTTTTCTTCCA
*
5265194 AATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTTCTTTTCATTTTTTGAACTCT
456 AATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTTCTTTTCTTTTTTTGAACTCT
5265259 GAATTGAAAAAAAATTTTAACCCGTAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAACTCA
521 GAATTGAAAAAAAATTTTAACCCGTAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAACTCA
5265324 AGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCC-CTACAGCA
586 AGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCCTC-ACAGCA
* *
5265388 ATTTTATAGAGGTGTAGGGTGTAAAAGCTATTATTATACATTGCTTTCATGATTTTTAGAAGGAT
650 ATTTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATACGTTGCTTTCATGATTTTTAGAAGGAT
5265453 GCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
715 GCTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
5265501 ATC
1 ATC
5265504 TGGTATGTTT
Statistics
Matches: 2230, Mismatches: 37, Indels: 45
0.96 0.02 0.02
Matches are distributed among these distances:
756 91 0.04
757 37 0.02
758 33 0.01
759 486 0.22
760 361 0.16
761 420 0.19
762 192 0.09
763 263 0.12
764 149 0.07
765 32 0.01
766 42 0.02
767 90 0.04
769 1 0.00
770 19 0.01
771 14 0.01
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.42
Consensus pattern (762 bp):
ATCAATGGGGCCTGTTTGTTTCTCTATTTTTTTTTTCCATTTTTTTTATCTTCCTTTTTAATTTG
GTACATGTTTAATTACCTTCTTAGGAATAGAAATACTTATTATTTTCTAAGTAATTATTCTTGAA
AATTGTTTCATAAGTTCTATTTAATGTGTTTATTGTTTAACGTATAAAAAGCAGCCTGGAACTAT
TTTTTTTCTTGTTCTTAAAAGCATGTATTTTCAGGATTCACTGCCTCCACTCCTCTCCCAAATAG
AAGCCAGTCAATATTAATTATTGTTATTTGAGAAATTCTACTCAACACTAGCTCATATTCATAAA
TGGAAGCTAGTGAAAAAGCTTGTAGAGGCCAATTTGCTGCCTCTTTTTTCTCTCGCTTGAATTTT
ACCAAGTAGGGCAGCGGTTATCACTTGGGGAATGTAATTGAGCGTTACTGTATATTTTTCTTCCA
AATGAATACATTTTCCTATGATGCATATAGAATCAAATCTATTTTCTTTTCTTTTTTTGAACTCT
GAATTGAAAAAAAATTTTAACCCGTAACTACCAATCAAACTTCGTTGCTTCAAAAGACCAACTCA
AGCTAATAGAGCAATTCAGTTTGATATCTTGGTTTTCTTAGATTATTCCCAGTTCCTCACAGCAA
TTTTATAGAGGTGTAGGGTGGAAAAGCTATTATTATACGTTGCTTTCATGATTTTTAGAAGGATG
CTTGTTTTGTCATATTTTAGATTTCTTTAGTTTTAGATTTTAGGTCT
Found at i:5275960 original size:145 final size:146
Alignment explanation
Indices: 5275691--5275982 Score: 550
Period size: 145 Copynumber: 2.0 Consensus size: 146
5275681 GACATACTCC
5275691 AATAGGCAGGAAAAGCATGAAAATGTTCTATCTGATAATCATGTTTATTTTCTCATGCTTTTCTC
1 AATAGGCAGGAAAAGCATGAAAATGTTCTATCTGATAATCATGTTTATTTTCTCATGCTTTTCTC
*
5275756 CTTGATATTAATGCATATAAGCACTAATTGTGAATTAATCTTAACTTCCTATGCCTAGGGTTTTG
66 CTTGATATTAATGCATATAAGCACTAATTGTGAATTAAGCTTAACTTCCTATGCCTAGGGTTTTG
5275821 TTTAGGTTGATGTTAT
131 TTTAGGTTGATGTTAT
* *
5275837 AATATGCAGGAAAAGCATGAAAATGTTCTATCTGATAATCATGTTTGTTTT-TCATGCTTTTCTC
1 AATAGGCAGGAAAAGCATGAAAATGTTCTATCTGATAATCATGTTTATTTTCTCATGCTTTTCTC
5275901 CTTGATATTAATGCATATAAGCACTAATTGTGAATTAAGCTTAACTTCCTATGCCTAGGGTTTTG
66 CTTGATATTAATGCATATAAGCACTAATTGTGAATTAAGCTTAACTTCCTATGCCTAGGGTTTTG
5275966 TTTAGGTTGATGTTAT
131 TTTAGGTTGATGTTAT
5275982 A
1 A
5275983 GTATCCCTTC
Statistics
Matches: 143, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
145 94 0.66
146 49 0.34
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (146 bp):
AATAGGCAGGAAAAGCATGAAAATGTTCTATCTGATAATCATGTTTATTTTCTCATGCTTTTCTC
CTTGATATTAATGCATATAAGCACTAATTGTGAATTAAGCTTAACTTCCTATGCCTAGGGTTTTG
TTTAGGTTGATGTTAT
Found at i:5279005 original size:21 final size:20
Alignment explanation
Indices: 5278957--5279005 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
5278947 AAACAAACAG
* *
5278957 ACCTAAATGAATATAAATGA
1 ACCTAAATGAACATAAACGA
5278977 ACCTTAAATGAACATAAACGA
1 ACC-TAAATGAACATAAACGA
5278998 ACTCTAAA
1 AC-CTAAA
5279006 ATAGGATTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 3 0.12
21 21 0.84
22 1 0.04
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.22
Consensus pattern (20 bp):
ACCTAAATGAACATAAACGA
Found at i:5280678 original size:44 final size:44
Alignment explanation
Indices: 5280615--5280704 Score: 180
Period size: 44 Copynumber: 2.0 Consensus size: 44
5280605 GTTTCCACGT
5280615 TCTATTTTTACATTATGTGAAATTCATCAAAACAATTGCAGTTA
1 TCTATTTTTACATTATGTGAAATTCATCAAAACAATTGCAGTTA
5280659 TCTATTTTTACATTATGTGAAATTCATCAAAACAATTGCAGTTA
1 TCTATTTTTACATTATGTGAAATTCATCAAAACAATTGCAGTTA
5280703 TC
1 TC
5280705 ATATAGTGGC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (44 bp):
TCTATTTTTACATTATGTGAAATTCATCAAAACAATTGCAGTTA
Found at i:5283294 original size:17 final size:16
Alignment explanation
Indices: 5283242--5283298 Score: 57
Period size: 17 Copynumber: 3.7 Consensus size: 16
5283232 TTTATTACAC
*
5283242 ATAATTAAATAATAA-
1 ATAATTAATTAATAAT
* *
5283257 AT-ATTGATT-TTAAT
1 ATAATTAATTAATAAT
5283271 ATAATTAATTAATAAT
1 ATAATTAATTAATAAT
5283287 ATTAATTAATTA
1 A-TAATTAATTA
5283299 TTTTTTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
13 3 0.09
14 7 0.21
15 8 0.24
16 5 0.15
17 10 0.30
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.46
Consensus pattern (16 bp):
ATAATTAATTAATAAT
Found at i:5285062 original size:20 final size:19
Alignment explanation
Indices: 5285012--5285063 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
5285002 AAAATTGGAG
*
5285012 GAAAGAAGAAAGAAGACAAA
1 GAAAGAAGAAA-AAAACAAA
*
5285032 GAAA-AAGGAAAAAAACAAGT
1 GAAAGAA-GAAAAAAACAA-A
5285052 GAAAGAAGAAAA
1 GAAAGAAGAAAA
5285064 TTCGTTGAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
19 8 0.30
20 17 0.63
21 2 0.07
ACGTcount: A:0.71, C:0.04, G:0.23, T:0.02
Consensus pattern (19 bp):
GAAAGAAGAAAAAAACAAA
Found at i:5285562 original size:2 final size:2
Alignment explanation
Indices: 5285555--5285591 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
5285545 ATGTGGGCTT
5285555 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
5285592 TAAAATTTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:5285934 original size:14 final size:15
Alignment explanation
Indices: 5285906--5285937 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
5285896 TAAAATAAAA
5285906 TTATTTAATTATTTT
1 TTATTTAATTATTTT
5285921 TTATTTAA-TATTTT
1 TTATTTAATTATTTT
5285935 TTA
1 TTA
5285938 AAAGTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTATTTAATTATTTT
Found at i:5295694 original size:2 final size:2
Alignment explanation
Indices: 5295687--5295714 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
5295677 TATTGAATTT
5295687 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
5295715 GGCTGCAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5296682 original size:37 final size:37
Alignment explanation
Indices: 5296641--5296714 Score: 130
Period size: 37 Copynumber: 2.0 Consensus size: 37
5296631 TTAAAAAGTA
5296641 TGTTATAAATGATATAAATTCACTGTTAATAGAATTT
1 TGTTATAAATGATATAAATTCACTGTTAATAGAATTT
* *
5296678 TGTTATAAATGATATATATTCACTTTTAATAGAATTT
1 TGTTATAAATGATATAAATTCACTGTTAATAGAATTT
5296715 ATTTCTAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.46
Consensus pattern (37 bp):
TGTTATAAATGATATAAATTCACTGTTAATAGAATTT
Found at i:5297178 original size:15 final size:15
Alignment explanation
Indices: 5297160--5297191 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
5297150 TGAAAATTAT
5297160 TTTATAGAACAACTA
1 TTTATAGAACAACTA
*
5297175 TTTATAGAATAACTA
1 TTTATAGAACAACTA
5297190 TT
1 TT
5297192 ATACAGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.41
Consensus pattern (15 bp):
TTTATAGAACAACTA
Found at i:5300295 original size:49 final size:50
Alignment explanation
Indices: 5300216--5300311 Score: 158
Period size: 49 Copynumber: 1.9 Consensus size: 50
5300206 ACATTGCGAG
5300216 TGTTGTAATTTTGCATAATTTCAAAATTATAAATTATTTAATAAAAATAA
1 TGTTGTAATTTTGCATAATTTCAAAATTATAAATTATTTAATAAAAATAA
* * *
5300266 TGTTGTAATTTTGTAT-ATTTCCAAATTATAAATTATTTAATCAAAA
1 TGTTGTAATTTTGCATAATTTCAAAATTATAAATTATTTAATAAAAA
5300312 GTATGATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
49 28 0.65
50 15 0.35
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (50 bp):
TGTTGTAATTTTGCATAATTTCAAAATTATAAATTATTTAATAAAAATAA
Found at i:5304768 original size:23 final size:20
Alignment explanation
Indices: 5304720--5304766 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
5304710 ATCTTAAAAC
*
5304720 TTTTTTCAATTGAATTTTAT
1 TTTTTTCAATTAAATTTTAT
*
5304740 TTTTTTCAATTAAATTATAT
1 TTTTTTCAATTAAATTTTAT
5304760 TATTTTT
1 T-TTTTT
5304767 TTAATATCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTTCAATTAAATTTTAT
Found at i:5305320 original size:17 final size:16
Alignment explanation
Indices: 5305298--5305331 Score: 59
Period size: 17 Copynumber: 2.1 Consensus size: 16
5305288 TGTGTAACAA
5305298 TTGAAAGCATTGCCTTT
1 TTGAAAGCATTG-CTTT
5305315 TTGAAAGCATTGCTTT
1 TTGAAAGCATTGCTTT
5305331 T
1 T
5305332 AGAACGCGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.24, C:0.15, G:0.18, T:0.44
Consensus pattern (16 bp):
TTGAAAGCATTGCTTT
Found at i:5306981 original size:16 final size:16
Alignment explanation
Indices: 5306962--5306992 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5306952 TTTATTAAAC
*
5306962 AATATCTTTACAAAAT
1 AATATCTTAACAAAAT
5306978 AATATCTTAACAAAA
1 AATATCTTAACAAAA
5306993 AAATTAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (16 bp):
AATATCTTAACAAAAT
Found at i:5310239 original size:2 final size:2
Alignment explanation
Indices: 5310232--5310268 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
5310222 GCTTTAGCAT
5310232 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
5310269 ACACTTAACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:5320904 original size:17 final size:17
Alignment explanation
Indices: 5320874--5320944 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
5320864 TTAAGTTTTT
5320874 AAAACC-CCTAAAAATCC
1 AAAACCTCCT-AAAATCC
*
5320891 AAAATCC-CCTAAAATTC
1 AAAA-CCTCCTAAAATCC
* *
5320908 AAAACCTCTTAAAATTC
1 AAAACCTCCTAAAATCC
*
5320925 AAAACCTCTTAAAATCC
1 AAAACCTCCTAAAATCC
5320942 AAA
1 AAA
5320945 GTTCTAAAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
16 2 0.04
17 42 0.86
18 5 0.10
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAACCTCCTAAAATCC
Found at i:5321923 original size:6 final size:6
Alignment explanation
Indices: 5321912--5321940 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
5321902 TAATTAAAGA
5321912 AAAATC AAAATC AAAATC AAAATC AAAAT
1 AAAATC AAAATC AAAATC AAAATC AAAAT
5321941 AGAAAGGAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.14, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATC
Found at i:5322097 original size:57 final size:57
Alignment explanation
Indices: 5321975--5322413 Score: 568
Period size: 57 Copynumber: 7.7 Consensus size: 57
5321965 TCTTGAGTAG
* *
5321975 GGAAAATTGATACTTTCAACTTTT-TCCTAAAATATTTTTT-GAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
* *
5322030 GAAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
** * * **
5322087 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTTTTGAAACTT-TGATT-A
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAATTTATTTTTAA
* *
5322144 GGAAAATTGATACTTTCAACTTTT-CCTAAAAA-ATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
* *
5322199 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
* *
5322256 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAACTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAA-TTT-ATTTTTAA
* ***
5322317 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTT-GAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
** *
5322373 ACAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
5322414 TTTAGATTTT
Statistics
Matches: 333, Mismatches: 39, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
53 11 0.03
54 3 0.01
55 49 0.15
56 67 0.20
57 129 0.39
58 6 0.02
59 27 0.08
60 3 0.01
61 38 0.11
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:5322182 original size:112 final size:109
Alignment explanation
Indices: 5321975--5322413 Score: 510
Period size: 112 Copynumber: 3.9 Consensus size: 109
5321965 TCTTGAGTAG
* *
5321975 GGAAAATTGATACTTTCAACTTTTTCCTAAAATA-TTTTTTGAAATTTATTTTTAAGAAAAATTG
1 GGAAAATTGATACTTTCAACTTTTTCCAAAAATATTTTTTTGAAATTTA---TTAAGGAAAATTG
5322039 ATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAA
63 ATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTT-TAA
*
5322087 GGAAAATTGATACTTTCAACTTTTCTTCAAAAATATTTTTTTTTGAAACTTTGATT-AGGAAAAT
1 GGAAAATTGATACTTTCAACTTTT-TCCAAAAATA--TTTTTTTGAAA-TTT-ATTAAGGAAAAT
* *
5322151 TGATACTTTCAACTTTT-CCTAAAAA-ATTTTTTGAAAATTTATTTTTAA
61 TGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTA-TTTTAA
*
5322199 GGAAAATTGATACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTT-CCAAAAATATTTTTTTGAAATTTA--T-TAAGGAAAATT
*
5322264 GATACTTTCAACTTTTCCCCAAAAATATTTTTTTTTGAAACTTTGATTTTCAA
62 GATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGGAAA-TTT-ATTTT-AA
* *** **
5322317 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTGAAATTTATTTTTAAACAAAATT
1 GGAAAATTGATACTTTCAACTTTTTC-CAAAAATATTTTTTTGAAATTTA---TTAAGGAAAATT
*
5322381 GATACTTTCAACTTTTCCCTAAAAATATTTTTT
62 GATACTTTCAACTTTTCCCCAAAAATATTTTTT
5322414 TTTAGATTTT
Statistics
Matches: 288, Mismatches: 18, Indels: 39
0.83 0.05 0.11
Matches are distributed among these distances:
108 1 0.00
109 3 0.01
110 11 0.04
111 2 0.01
112 99 0.34
113 25 0.09
114 25 0.09
115 8 0.03
116 19 0.07
117 58 0.20
118 37 0.13
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (109 bp):
GGAAAATTGATACTTTCAACTTTTTCCAAAAATATTTTTTTGAAATTTATTAAGGAAAATTGATA
CTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTAA
Found at i:5322191 original size:169 final size:170
Alignment explanation
Indices: 5321975--5322413 Score: 722
Period size: 169 Copynumber: 2.6 Consensus size: 170
5321965 TCTTGAGTAG
*
5321975 GGAAAATTGATACTTTCAACTTTTTCCTAAAATATTTTTTGAAATTTATTTTTAAGAAAAATTGA
1 GGAAAATTGATACTTTCAAC-TTTTCCTAAAAAATTTTTTGAAATTTATTTTTAAGAAAAATTGA
5322040 TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACTTTCA
65 TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACTTTCA
**
5322105 ACTTTTCTTCAAAAATATTTTTTTTTGAAACTTTGA-TT-A
130 ACTTTTCCCCAAAAATATTTTTTTTTGAAACTTTGATTTAA
*
5322144 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATTTTTTGAAAATTTATTTTTAAGGAAAATTGA
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATTTTTTG-AAATTTATTTTTAAGAAAAATTGA
*
5322209 TACTTTCAACTTTTTCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACTTTCA
65 TACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACTTTCA
5322274 ACTTTTCCCCAAAAATATTTTTTTTTGAAACTTTGATTTTCAA
130 ACTTTTCCCCAAAAATATTTTTTTTTGAAACTTTGA-TTT-AA
**
5322317 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTGAAATTTATTTTTAA-ACAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCT-AAAAA-ATTTTTTGAAATTTATTTTTAAGA-AAAATT
*
5322381 GATACTTTCAACTTTTCCCTAAAAATATTTTTT
63 GATACTTTCAACTTTTCCCCAAAAATATTTTTT
5322414 TTTAGATTTT
Statistics
Matches: 252, Mismatches: 10, Indels: 11
0.92 0.04 0.04
Matches are distributed among these distances:
168 19 0.08
169 141 0.56
171 2 0.01
173 28 0.11
174 56 0.22
175 6 0.02
ACGTcount: A:0.35, C:0.13, G:0.07, T:0.45
Consensus pattern (170 bp):
GGAAAATTGATACTTTCAACTTTTCCTAAAAAATTTTTTGAAATTTATTTTTAAGAAAAATTGAT
ACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTCTAAGGAAAATTGATACTTTCAA
CTTTTCCCCAAAAATATTTTTTTTTGAAACTTTGATTTAA
Found at i:5322468 original size:20 final size:18
Alignment explanation
Indices: 5322438--5322514 Score: 70
Period size: 19 Copynumber: 4.1 Consensus size: 18
5322428 ATTTTTATTT
5322438 AAAGAAAATAAAATAATAA
1 AAAGAAAATAAAA-AATAA
5322457 AAAGATAAAT-AAAAATAA
1 AAAGA-AAATAAAAAATAA
*
5322475 AAA-TAAATAAAGAAAAGTAA
1 AAAGAAAAT-AA-AAAA-TAA
5322495 AACAG-AAATAAAAAATAA
1 AA-AGAAAATAAAAAATAA
5322513 AA
1 AA
5322515 TAAAGATAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 15
0.76 0.02 0.23
Matches are distributed among these distances:
16 4 0.08
18 14 0.28
19 16 0.32
20 11 0.22
21 5 0.10
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.14
Consensus pattern (18 bp):
AAAGAAAATAAAAAATAA
Found at i:5322474 original size:6 final size:6
Alignment explanation
Indices: 5322442--5322526 Score: 50
Period size: 6 Copynumber: 13.7 Consensus size: 6
5322432 TTATTTAAAG
* *
5322442 AAAATAA AATAATA AAAAGA TAAATA AAAATA AAAATA AATAA-A GAAAAGT-
1 AAAAT-A AA-AATA AAAATA AAAATA AAAATA AAAATA AA-AATA -AAAA-TA
* * *
5322493 AAAACA GAAATA AAAA-A TAAAATA AAGATA AAAA
1 AAAATA AAAATA AAAATA -AAAATA AAAATA AAAA
5322527 GAATATTAGA
Statistics
Matches: 60, Mismatches: 10, Indels: 17
0.69 0.11 0.20
Matches are distributed among these distances:
5 1 0.02
6 46 0.77
7 10 0.17
8 3 0.05
ACGTcount: A:0.78, C:0.01, G:0.06, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:5322478 original size:32 final size:33
Alignment explanation
Indices: 5322442--5322520 Score: 96
Period size: 31 Copynumber: 2.5 Consensus size: 33
5322432 TTATTTAAAG
5322442 AAAATAAAATAATA-AAAAGATAAATA-A-AAAT-A
1 AAAATAAAATAA-AGAAAAG-TAAA-ACAGAAATAA
5322474 AAAAT-AAATAAAGAAAAGTAAAACAGAAATAA
1 AAAATAAAATAAAGAAAAGTAAAACAGAAATAA
5322506 AAAATAAAATAAAGA
1 AAAATAAAATAAAGA
5322521 TAAAAAGAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
29 1 0.02
30 6 0.14
31 15 0.36
32 11 0.26
33 9 0.21
ACGTcount: A:0.77, C:0.01, G:0.06, T:0.15
Consensus pattern (33 bp):
AAAATAAAATAAAGAAAAGTAAAACAGAAATAA
Found at i:5322480 original size:16 final size:15
Alignment explanation
Indices: 5322442--5322490 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
5322432 TTATTTAAAG
*
5322442 AAAATAAAATAATAAA
1 AAAAT-AAATAAAAAA
*
5322458 AAGATAAATAAAAATA
1 AAAATAAATAAAAA-A
5322474 AAAATAAATAAAGAAA
1 AAAATAAATAAA-AAA
5322490 A
1 A
5322491 GTAAAACAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
15 8 0.29
16 18 0.64
17 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (15 bp):
AAAATAAATAAAAAA
Found at i:5323135 original size:26 final size:27
Alignment explanation
Indices: 5323093--5323144 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
5323083 GAAAATTTCT
*
5323093 CAAAAATTTCCAGAAAAAT-TTTTCGC
1 CAAAAATTTCCAAAAAAATATTTTCGC
* *
5323119 CAAAAATTTCTAAAAAACTATTTTCG
1 CAAAAATTTCCAAAAAAATATTTTCG
5323145 ATCCCTACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (27 bp):
CAAAAATTTCCAAAAAAATATTTTCGC
Found at i:5323509 original size:12 final size:13
Alignment explanation
Indices: 5323494--5323579 Score: 56
Period size: 12 Copynumber: 6.6 Consensus size: 13
5323484 TTATAGGATA
5323494 AATAAA-AAAAAT
1 AATAAATAAAAAT
* *
5323506 AATAGATATATAATT
1 AATA-A-ATAAAAAT
5323521 AGATAAATAAAAAT
1 A-ATAAATAAAAAT
*
5323535 ACA-AAA-ATAAAT
1 A-ATAAATAAAAAT
5323547 AA-AATATAAAAAT
1 AATAA-ATAAAAAT
*
5323560 AAT-AATAATAAT
1 AATAAATAAAAAT
5323572 AATAAATA
1 AATAAATA
5323580 TATAACTATA
Statistics
Matches: 58, Mismatches: 8, Indels: 15
0.72 0.10 0.19
Matches are distributed among these distances:
11 3 0.05
12 21 0.36
13 16 0.28
14 9 0.16
15 6 0.10
16 3 0.05
ACGTcount: A:0.71, C:0.01, G:0.02, T:0.26
Consensus pattern (13 bp):
AATAAATAAAAAT
Found at i:5323515 original size:32 final size:32
Alignment explanation
Indices: 5323428--5323533 Score: 103
Period size: 32 Copynumber: 3.3 Consensus size: 32
5323418 TAAAAATCAA
* *
5323428 ATAAATATAAAAAATAATAGATA-ATTAGAACAG
1 ATAAATAAAAAAAATAATAGATATATTAG--TAG
**
5323461 ATAAAT-CGAAAAA-AATAGATATATTA-TAGG
1 ATAAATAAAAAAAATAATAGATATATTAGTA-G
* *
5323491 ATAAATAAAAAAAATAATAGATATATAATTAG
1 ATAAATAAAAAAAATAATAGATATATTAGTAG
5323523 ATAAATAAAAA
1 ATAAATAAAAA
5323534 TACAAAAATA
Statistics
Matches: 62, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
29 1 0.02
30 7 0.11
31 13 0.21
32 33 0.53
33 8 0.13
ACGTcount: A:0.64, C:0.02, G:0.08, T:0.25
Consensus pattern (32 bp):
ATAAATAAAAAAAATAATAGATATATTAGTAG
Found at i:5323569 original size:17 final size:17
Alignment explanation
Indices: 5323526--5323608 Score: 66
Period size: 17 Copynumber: 4.8 Consensus size: 17
5323516 TAATTAGATA
* *
5323526 AATAAAAATACAAAAAT
1 AATAATAATATAAAAAT
5323543 AAATAA-AATATAAAAAT
1 -AATAATAATATAAAAAT
5323560 AATAATAATAATAATAAAT
1 AATAATAAT-ATAA-AAAT
*
5323579 -AT-ATAACTATATAAAT
1 AATAATAA-TATAAAAAT
5323595 AAT-ATACATATAAA
1 AATAATA-ATATAAA
5323609 TCTATTCTAA
Statistics
Matches: 56, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
16 9 0.16
17 30 0.54
18 13 0.23
19 4 0.07
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.28
Consensus pattern (17 bp):
AATAATAATATAAAAAT
Found at i:5323584 original size:23 final size:23
Alignment explanation
Indices: 5323544--5323606 Score: 62
Period size: 25 Copynumber: 2.8 Consensus size: 23
5323534 TACAAAAATA
5323544 AATAA-AATATAAA-A-ATAA-T
1 AATAATAATATAAATATATAACT
5323563 AATAATAATAATAAATATATAACT
1 AATAATAAT-ATAAATATATAACT
*
5323587 ATATAAATAATATACATATA
1 A-AT-AATAATATAAATATA
5323607 AATCTATTCT
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 5 0.14
20 3 0.08
21 5 0.14
22 1 0.03
23 4 0.11
24 2 0.06
25 10 0.28
26 6 0.17
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (23 bp):
AATAATAATATAAATATATAACT
Found at i:5323589 original size:8 final size:8
Alignment explanation
Indices: 5323502--5323606 Score: 55
Period size: 8 Copynumber: 13.9 Consensus size: 8
5323492 TAAATAAAAA
5323502 AAATA-AT
1 AAATATAT
*
5323509 AGATATAT
1 AAATATAT
* *
5323517 AATTAGAT
1 AAATATAT
5323525 AAATA-A-
1 AAATATAT
* *
5323531 AAATACAA
1 AAATATAT
*
5323539 AAATAAAT
1 AAATATAT
5323547 AAA-ATAT
1 AAATATAT
*
5323554 AAAAATA-
1 AAATATAT
5323561 ATAATA-AT
1 A-AATATAT
5323569 -AATA-AT
1 AAATATAT
5323575 AAATATAT
1 AAATATAT
*
5323583 AACTATAT
1 AAATATAT
5323591 AAATAATAT
1 AAAT-ATAT
*
5323600 ACATATA
1 AAATATA
5323607 AATCTATTCT
Statistics
Matches: 77, Mismatches: 12, Indels: 17
0.73 0.11 0.16
Matches are distributed among these distances:
6 11 0.14
7 18 0.23
8 41 0.53
9 7 0.09
ACGTcount: A:0.66, C:0.03, G:0.02, T:0.30
Consensus pattern (8 bp):
AAATATAT
Found at i:5323899 original size:11 final size:11
Alignment explanation
Indices: 5323875--5323942 Score: 72
Period size: 11 Copynumber: 6.5 Consensus size: 11
5323865 AAAATTGTCA
5323875 TTTTTTT-TGT
1 TTTTTTTGTGT
*
5323885 TTTTTGTGT-T
1 TTTTTTTGTGT
* *
5323895 CTTTTTTTATTT
1 -TTTTTTTGTGT
5323907 TTTTTTTGTGT
1 TTTTTTTGTGT
5323918 TTTTTTTGTG-
1 TTTTTTTGTGT
5323928 TTTTTTTGT-T
1 TTTTTTTGTGT
5323938 TTTTT
1 TTTTT
5323943 AACCAAAGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
10 21 0.43
11 27 0.55
12 1 0.02
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (11 bp):
TTTTTTTGTGT
Found at i:5323911 original size:24 final size:22
Alignment explanation
Indices: 5323875--5323942 Score: 77
Period size: 21 Copynumber: 3.1 Consensus size: 22
5323865 AAAATTGTCA
*
5323875 TTTTTTTTGTTTTTTGTGTTCTT
1 TTTTTTTTTTTTTTTGTGTT-TT
5323898 TTTTTATTTTTTTTTTGTG-TTT
1 TTTTT-TTTTTTTTTTGTGTTTT
* *
5323920 TTTTTGTGTTTTTTTGT-TTTT
1 TTTTTTTTTTTTTTTGTGTTTT
5323941 TT
1 TT
5323943 AACCAAAGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
21 15 0.38
22 7 0.17
23 6 0.15
24 12 0.30
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (22 bp):
TTTTTTTTTTTTTTTGTGTTTT
Found at i:5323919 original size:33 final size:31
Alignment explanation
Indices: 5323875--5323942 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 31
5323865 AAAATTGTCA
5323875 TTTTTTTTGTTTTTTGTGTTCTTTTTTTATTT
1 TTTTTTTTGTTTTTTGTG-TCTTTTTTTATTT
* * *
5323907 TTTTTTTGTGTTTTTTTTGTGTTTTTTTGTTT
1 TTTTTTT-TGTTTTTTGTGTCTTTTTTTATTT
5323939 TTTT
1 TTTT
5323943 AACCAAAGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
32 22 0.69
33 10 0.31
ACGTcount: A:0.01, C:0.01, G:0.12, T:0.85
Consensus pattern (31 bp):
TTTTTTTTGTTTTTTGTGTCTTTTTTTATTT
Found at i:5324007 original size:41 final size:41
Alignment explanation
Indices: 5323954--5324138 Score: 275
Period size: 41 Copynumber: 4.5 Consensus size: 41
5323944 ACCAAAGCTG
* *
5323954 CTCTAAATAGAGGCTTCACGACTTTGGAAAATAAATTGCTC
1 CTCTAAACAGAGGCTCCACGACTTTGGAAAATAAATTGCTC
*
5323995 CTCTAAACAGAGGCTCCACGACTTTGGAAAGTAAATTGCTC
1 CTCTAAACAGAGGCTCCACGACTTTGGAAAATAAATTGCTC
* * *
5324036 CTCTAAACAGAGGCACCACGACTATGAAAAATAAATTGCTC
1 CTCTAAACAGAGGCTCCACGACTTTGGAAAATAAATTGCTC
5324077 CTCTAAACAGAGG-TACCACGACTTT-GAAAAGTAAATTGCTC
1 CTCTAAACAGAGGCT-CCACGACTTTGGAAAA-TAAATTGCTC
*
5324118 CTCTAAACAGAGGCACCACGA
1 CTCTAAACAGAGGCTCCACGA
5324139 ACTCCTCTAA
Statistics
Matches: 130, Mismatches: 11, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
40 4 0.03
41 126 0.97
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.23
Consensus pattern (41 bp):
CTCTAAACAGAGGCTCCACGACTTTGGAAAATAAATTGCTC
Found at i:5324149 original size:25 final size:25
Alignment explanation
Indices: 5324115--5324163 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
5324105 AAGTAAATTG
5324115 CTCCTCTAAACAGAGGCACCACGAA
1 CTCCTCTAAACAGAGGCACCACGAA
5324140 CTCCTCTAAACAGAGGCACCACGA
1 CTCCTCTAAACAGAGGCACCACGA
5324164 CTTTGAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.35, C:0.37, G:0.16, T:0.12
Consensus pattern (25 bp):
CTCCTCTAAACAGAGGCACCACGAA
Done.